BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11568
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
M ++W+ D T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+
Sbjct: 33 MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 92
Query: 61 SRFVHVKA 68
SR VHV+A
Sbjct: 93 SRDVHVRA 100
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+GP+F EP R +FSN +G ++C A G+P P+I W+
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 39
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
M ++W+ D T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+
Sbjct: 39 MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 98
Query: 61 SRFVHVKA 68
SR VHV+A
Sbjct: 99 SRDVHVRA 106
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
D +GP+F EP R +FSN +G ++C A G+P P+I W+
Sbjct: 6 DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 45
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
M ++W+ D T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+
Sbjct: 68 MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 127
Query: 61 SRFVHVKA 68
SR VHV+A
Sbjct: 128 SRDVHVRA 135
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
D +GP+F EP R +FSN +G ++C A G+P P+I W+
Sbjct: 35 DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 74
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
H+ + C A N AG H + + L++ P I P F+ S +++C
Sbjct: 688 HAGNFTCHARNLAG-------HQQ---FTTPLNVYVPPRWILEPTDKAFAQGSDAKVECK 737
Query: 104 AQGSPTPKIEW 114
A G P P++ W
Sbjct: 738 ADGFPKPQVTW 748
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 100 LDCAAQGSPTPKIEW 114
L C A G+PTP+I W
Sbjct: 449 LKCVAGGNPTPEISW 463
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
M ++W+ D T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+
Sbjct: 33 MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 92
Query: 61 SRFVHVKA 68
SR VHV+A
Sbjct: 93 SRDVHVRA 100
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+GP+F EP R +FSN +G ++C A G+P P+I W+
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 39
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 45 STVYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S Y C ASN+ G I V VKA + ++ P + GRL C
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVKAAP-----------YWLDEPKNLILAPGEDGRLVCR 335
Query: 104 AQGSPTPKIEWLI 116
A G+P P ++W++
Sbjct: 336 ANGNPKPTVQWMV 348
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 9 RDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 67
R++ KD R+++ S +G RP+ + Y+C A N+ G LS + ++
Sbjct: 53 RNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQ 111
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
+E P S L+C A+G PTP IEW
Sbjct: 13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEW 43
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 3 VLLWLIRDNTVIAY-VKDLRIALSNGSLMFPPFPET-GFRPDVHSTVYRCRAS-NEAGVI 59
V+ W +D ++A + D + L NGSL+ + +PD +Y+C AS ++G I
Sbjct: 53 VIKWK-KDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPD--EGLYQCEASLGDSGSI 109
Query: 60 LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
+SR V + GPL + L C G P P I W
Sbjct: 110 ISRTAKVM---------VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHW 155
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 45 STVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA 104
S VYRC A N A V+ ++S + L+ ++ P L+C
Sbjct: 189 SGVYRCSARNPASTRTGNEAEVR---ILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV 245
Query: 105 QGSPTPKIEWL 115
G P P WL
Sbjct: 246 SGYPPPSFTWL 256
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
+E P S L+C A+G PTP IEW
Sbjct: 13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEW 43
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 18/74 (24%)
Query: 48 YRCRASNEAGVILSR--FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE--SGGRLD-- 101
Y C A+N AGV S ++V+ +V P F I P S+E GG ++
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNV-------APRFSILP-----MSHEIMPGGNVNIT 226
Query: 102 CAAQGSPTPKIEWL 115
C A GSP P ++W+
Sbjct: 227 CVAVGSPMPYVKWM 240
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 46 TVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCAA 104
VY C A N G I VH K + G P + P + + L CAA
Sbjct: 77 NVYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATML-CAA 132
Query: 105 QGSPTPKIEWL 115
G+P P+I W
Sbjct: 133 SGNPDPEITWF 143
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 79 GPLFRIEPPY-RFEF-SNESGGRLDCAAQGSPTPKIEWLI 116
GP+F EP + F S E +L C +G+P P I W +
Sbjct: 4 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL 43
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 79 GPLFRIEPPY-RFEF-SNESGGRLDCAAQGSPTPKIEWLI 116
GP+F EP + F S E +L C +G+P P I W +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL 44
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
+YRC+A++ G + +VV L+I L E EF + C
Sbjct: 72 IYRCQATDAKG-------QTQEATVV--LEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 107 SPTPKIEWL 115
SP P + WL
Sbjct: 123 SPAPAVSWL 131
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
+YRC+A++ G V ++ ++ ++ P EF + C
Sbjct: 74 IYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ---------EFKQGEDAEVVCRVSS 124
Query: 107 SPTPKIEWL 115
SP P + WL
Sbjct: 125 SPAPAVSWL 133
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
IE P L+C +G P P IEW
Sbjct: 13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWF 44
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
IE P L+C +G P P IEW
Sbjct: 13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWF 44
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R C A G+PTP I WL
Sbjct: 142 RFRCPAAGNPTPSISWL 158
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R C A G+PTP I WL
Sbjct: 34 RFRCPAAGNPTPSISWL 50
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 39 FRPDVHSTVYRCRASNEAGVI-----LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFS 93
R +Y C A+N G I LS + S +D+ GP ++ R
Sbjct: 71 LRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDM-GPQLKVVEKGRT--- 126
Query: 94 NESGGRLDCAAQGSPTPKIEWL 115
+ CAA G+P P+I W
Sbjct: 127 ----ATMLCAAGGNPDPEISWF 144
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 100 LDCAAQGSPTPKIEWLI 116
L C+ +G+P P+I WL+
Sbjct: 31 LQCSVRGTPVPRITWLL 47
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 96 SGGRLDCAAQGSPTPKIEWL 115
S R DC +G P P++ W
Sbjct: 57 SAARFDCKVEGYPDPEVMWF 76
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 96 SGGRLDCAAQGSPTPKIEWL 115
S R DC +G P P++ W
Sbjct: 57 SAARFDCKVEGYPDPEVMWF 76
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 99 RLDCAAQGSPTPKIEWLI 116
R+DC G PTP + W +
Sbjct: 28 RMDCKVSGLPTPDLSWQL 45
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 46 TVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCAA 104
VY C A N G I VH K + G P + P + + L CAA
Sbjct: 77 NVYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATML-CAA 132
Query: 105 QGSPTPKIEWL 115
G+P P+I W
Sbjct: 133 SGNPDPEITWF 143
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
GP ++ P + + L C A G P P I WL
Sbjct: 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWL 43
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 46 TVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCAA 104
VY C A N G I VH K + G P + P + + L CAA
Sbjct: 77 NVYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATML-CAA 132
Query: 105 QGSPTPKIEWL 115
G+P P+I W
Sbjct: 133 SGNPDPEITWF 143
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
P+FR + P+ E + L+C QG+P ++ W
Sbjct: 385 PVFR-KKPHPVETLKGADVHLECELQGTPPFQVSW 418
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R CAA G P P + WL
Sbjct: 312 RWGCAAAGKPRPTVRWL 328
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 100 LDCAAQGSPTPKIEW 114
L C A GSP P+I+W
Sbjct: 41 LHCEAVGSPVPEIQW 55
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 100 LDCAAQGSPTPKIEW 114
L C A GSP P+I+W
Sbjct: 41 LHCEAVGSPVPEIQW 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,742,332
Number of Sequences: 62578
Number of extensions: 133837
Number of successful extensions: 381
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 73
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)