Query psy11568
Match_columns 116
No_of_seqs 103 out of 1488
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 21:49:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.7 3.9E-16 8.4E-21 112.6 10.5 99 1-115 360-461 (1051)
2 KOG3513|consensus 99.7 5.5E-16 1.2E-20 111.8 10.7 96 1-115 270-366 (1051)
3 KOG4221|consensus 99.6 4.3E-14 9.3E-19 102.9 9.7 97 1-116 266-364 (1381)
4 KOG4222|consensus 99.5 2.9E-14 6.3E-19 103.2 6.8 98 2-115 162-260 (1281)
5 KOG4194|consensus 99.5 7.6E-14 1.7E-18 96.3 8.3 97 1-115 641-742 (873)
6 cd05867 Ig4_L1-CAM_like Fourth 99.5 1E-12 2.3E-17 69.3 8.1 58 1-65 15-74 (76)
7 cd05892 Ig_Myotilin_C C-termin 99.5 8.7E-13 1.9E-17 69.5 7.5 53 1-61 12-69 (75)
8 cd05850 Ig1_Contactin-2 First 99.4 3.2E-12 7E-17 70.1 8.7 60 1-66 33-92 (94)
9 PHA02785 IL-beta-binding prote 99.4 6.4E-12 1.4E-16 83.0 11.5 95 1-115 155-258 (326)
10 cd05852 Ig5_Contactin-1 Fifth 99.4 1.7E-12 3.7E-17 68.0 7.1 52 1-61 15-67 (73)
11 cd05848 Ig1_Contactin-5 First 99.4 2.2E-12 4.8E-17 70.8 7.8 57 1-63 33-89 (94)
12 cd05893 Ig_Palladin_C C-termin 99.4 2.1E-12 4.5E-17 68.0 7.2 53 1-61 12-69 (75)
13 cd05874 Ig6_NrCAM Sixth immuno 99.4 4.3E-12 9.4E-17 67.1 8.1 63 1-66 12-76 (77)
14 cd04976 Ig2_VEGFR Second immun 99.4 2.7E-12 5.9E-17 66.9 7.1 56 1-65 12-68 (71)
15 cd05868 Ig4_NrCAM Fourth immun 99.4 3.8E-12 8.3E-17 67.2 7.6 54 1-61 15-69 (76)
16 cd05863 Ig2_VEGFR-3 Second imm 99.4 2E-12 4.3E-17 66.6 6.2 53 1-66 12-65 (67)
17 cd05864 Ig2_VEGFR-2 Second imm 99.4 3E-12 6.5E-17 66.5 6.8 51 1-61 12-62 (70)
18 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 3.9E-12 8.4E-17 67.9 7.4 54 1-61 12-74 (81)
19 cd05853 Ig6_Contactin-4 Sixth 99.4 4.1E-12 9E-17 68.3 7.2 61 2-69 17-84 (85)
20 PHA02826 IL-1 receptor-like pr 99.4 1.3E-11 2.9E-16 77.6 10.4 67 26-115 97-169 (227)
21 cd05744 Ig_Myotilin_C_like Imm 99.4 8E-12 1.7E-16 65.8 7.8 54 1-61 12-69 (75)
22 cd05748 Ig_Titin_like Immunogl 99.4 8.6E-12 1.9E-16 65.4 7.9 54 1-61 13-68 (74)
23 cd05760 Ig2_PTK7 Second immuno 99.4 8.1E-12 1.8E-16 66.1 7.7 54 1-61 12-66 (77)
24 cd04978 Ig4_L1-NrCAM_like Four 99.4 8.1E-12 1.8E-16 65.7 7.6 58 1-65 15-74 (76)
25 cd05745 Ig3_Peroxidasin Third 99.4 5E-12 1.1E-16 66.3 6.7 53 1-61 16-68 (74)
26 cd05762 Ig8_MLCK Eighth immuno 99.4 1.1E-11 2.4E-16 68.5 8.3 61 1-68 29-92 (98)
27 cd05723 Ig4_Neogenin Fourth im 99.4 9.5E-12 2.1E-16 64.8 7.6 53 1-61 13-65 (71)
28 cd05876 Ig3_L1-CAM Third immun 99.4 6.1E-12 1.3E-16 65.5 6.6 58 1-66 12-70 (71)
29 cd05855 Ig_TrkB_d5 Fifth domai 99.3 5.5E-12 1.2E-16 66.9 6.5 54 1-61 12-72 (79)
30 cd05875 Ig6_hNeurofascin_like 99.3 1.7E-11 3.6E-16 64.9 8.3 63 1-66 12-76 (77)
31 cd04975 Ig4_SCFR_like Fourth i 99.3 6.6E-12 1.4E-16 69.7 6.8 59 1-66 33-99 (101)
32 cd05733 Ig6_L1-CAM_like Sixth 99.3 8.2E-12 1.8E-16 66.1 6.7 62 1-65 12-75 (77)
33 cd05849 Ig1_Contactin-1 First 99.3 1.7E-11 3.7E-16 67.1 8.1 57 1-64 33-89 (93)
34 KOG4221|consensus 99.3 1.5E-11 3.3E-16 90.0 9.8 101 2-115 170-272 (1381)
35 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.7E-11 3.8E-16 64.3 7.7 55 1-62 12-67 (74)
36 cd05851 Ig3_Contactin-1 Third 99.3 1.1E-11 2.4E-16 67.2 6.9 52 1-61 30-81 (88)
37 KOG4194|consensus 99.3 6.6E-12 1.4E-16 87.0 7.1 73 28-115 575-647 (873)
38 cd04969 Ig5_Contactin_like Fif 99.3 1.4E-11 2.9E-16 64.5 6.8 53 1-61 15-67 (73)
39 cd05737 Ig_Myomesin_like_C C-t 99.3 1.6E-11 3.5E-16 67.0 7.3 54 1-61 30-86 (92)
40 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.2E-11 4.7E-16 66.4 7.8 56 1-64 31-86 (91)
41 PHA02785 IL-beta-binding prote 99.3 4.1E-11 8.8E-16 79.2 10.2 94 2-115 61-161 (326)
42 cd05724 Ig2_Robo Second immuno 99.3 2.8E-11 6.1E-16 65.1 7.6 55 1-62 26-80 (86)
43 cd05763 Ig_1 Subgroup of the i 99.3 2.4E-11 5.3E-16 63.8 7.1 58 1-65 12-73 (75)
44 cd05725 Ig3_Robo Third immunog 99.3 2.4E-11 5.2E-16 62.9 6.9 52 1-61 12-63 (69)
45 cd05746 Ig4_Peroxidasin Fourth 99.3 2.5E-11 5.4E-16 62.9 7.0 52 1-61 12-64 (69)
46 cd05728 Ig4_Contactin-2-like F 99.3 2.9E-11 6.4E-16 65.1 6.9 52 1-61 28-79 (85)
47 cd04973 Ig1_FGFR First immunog 99.3 2.5E-11 5.4E-16 64.5 6.6 50 2-60 23-72 (79)
48 cd05859 Ig4_PDGFR-alpha Fourth 99.3 2.5E-11 5.4E-16 67.4 6.7 59 1-66 32-99 (101)
49 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 6.6E-11 1.4E-15 63.9 8.1 54 1-61 24-80 (86)
50 cd05730 Ig3_NCAM-1_like Third 99.3 6.1E-11 1.3E-15 65.0 8.0 59 1-67 32-93 (95)
51 cd04967 Ig1_Contactin First Ig 99.3 3.9E-11 8.5E-16 65.4 7.0 56 1-62 33-88 (91)
52 cd05735 Ig8_DSCAM Eight immuno 99.3 8.2E-11 1.8E-15 63.8 8.1 60 1-68 15-83 (88)
53 cd07702 Ig2_VEGFR-1 Second imm 99.3 5.8E-11 1.3E-15 61.9 6.9 49 1-57 12-60 (72)
54 KOG4222|consensus 99.2 2E-11 4.3E-16 88.9 6.7 96 1-115 254-350 (1281)
55 cd05857 Ig2_FGFR Second immuno 99.2 6.5E-11 1.4E-15 63.6 7.0 54 1-61 23-79 (85)
56 cd05743 Ig_Perlecan_D2_like Im 99.2 8.2E-11 1.8E-15 62.3 7.2 54 1-61 15-70 (78)
57 cd05731 Ig3_L1-CAM_like Third 99.2 5.7E-11 1.2E-15 61.6 6.4 57 1-65 12-69 (71)
58 cd05854 Ig6_Contactin-2 Sixth 99.2 8.3E-11 1.8E-15 63.4 7.2 59 3-68 18-83 (85)
59 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.9E-10 4.2E-15 67.3 9.3 71 28-115 2-75 (139)
60 cd05866 Ig1_NCAM-2 First immun 99.2 1.7E-10 3.8E-15 63.0 8.3 56 2-64 29-87 (92)
61 cd05865 Ig1_NCAM-1 First immun 99.2 1.5E-10 3.3E-15 63.7 7.9 52 2-60 31-88 (96)
62 cd04970 Ig6_Contactin_like Six 99.2 1E-10 2.3E-15 62.9 7.0 59 3-68 18-83 (85)
63 cd05736 Ig2_Follistatin_like S 99.2 2.3E-10 5.1E-15 60.2 8.1 59 1-66 12-73 (76)
64 cd04968 Ig3_Contactin_like Thi 99.2 1.7E-10 3.7E-15 62.4 7.3 52 1-61 30-81 (88)
65 cd05764 Ig_2 Subgroup of the i 99.2 1.9E-10 4.2E-15 60.2 7.1 54 1-61 15-68 (74)
66 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 2E-10 4.3E-15 59.5 6.6 50 1-61 15-64 (69)
67 PF07679 I-set: Immunoglobulin 99.2 3.8E-10 8.3E-15 61.0 8.0 58 1-65 29-89 (90)
68 cd05726 Ig4_Robo Fhird immunog 99.2 2.9E-10 6.2E-15 61.8 7.3 61 1-68 15-83 (90)
69 cd04977 Ig1_NCAM-1_like First 99.2 4E-10 8.8E-15 61.5 7.9 55 1-61 28-85 (92)
70 cd05856 Ig2_FGFRL1-like Second 99.2 9.8E-11 2.1E-15 62.3 5.3 54 1-61 23-76 (82)
71 cd05722 Ig1_Neogenin First imm 99.2 3.9E-10 8.6E-15 61.8 7.8 63 1-65 28-92 (95)
72 cd05891 Ig_M-protein_C C-termi 99.2 3.3E-10 7.2E-15 61.9 7.3 54 1-61 30-86 (92)
73 cd05757 Ig2_IL1R_like Second i 99.2 4.2E-10 9.2E-15 61.4 7.5 51 1-60 29-79 (92)
74 cd05734 Ig7_DSCAM Seventh immu 99.1 6.8E-10 1.5E-14 58.9 7.8 57 1-63 12-74 (79)
75 cd05756 Ig1_IL1R_like First im 99.1 2.8E-10 6E-15 62.4 6.4 53 2-61 34-88 (94)
76 cd04972 Ig_TrkABC_d4 Fourth do 99.1 6.8E-10 1.5E-14 60.3 7.7 54 1-61 29-84 (90)
77 cd05747 Ig5_Titin_like M5, fif 99.1 7.7E-10 1.7E-14 60.3 7.7 54 1-61 32-87 (92)
78 cd05750 Ig_Pro_neuregulin Immu 99.1 6E-10 1.3E-14 58.3 6.7 54 1-61 13-71 (75)
79 cd05869 Ig5_NCAM-1 Fifth immun 99.1 1.4E-09 3E-14 59.9 7.3 54 1-61 31-91 (97)
80 cd04974 Ig3_FGFR Third immunog 99.1 8.8E-10 1.9E-14 59.9 6.3 33 27-65 55-88 (90)
81 cd05749 Ig2_Tyro3_like Second 99.1 8.5E-10 1.9E-14 58.9 6.0 50 2-64 28-78 (81)
82 cd07693 Ig1_Robo First immunog 99.1 1.5E-09 3.3E-14 59.6 7.2 59 1-61 30-92 (100)
83 cd05873 Ig_Sema4D_like Immunog 99.0 6.7E-10 1.5E-14 60.0 5.3 47 2-56 25-71 (87)
84 cd05773 Ig8_hNephrin_like Eigh 99.0 2.5E-09 5.4E-14 60.2 7.8 60 1-67 37-105 (109)
85 cd05858 Ig3_FGFR-2 Third immun 99.0 1.6E-09 3.5E-14 58.9 6.5 29 27-61 55-83 (90)
86 cd05895 Ig_Pro_neuregulin-1 Im 99.0 1.4E-09 3.1E-14 57.2 5.4 53 2-61 14-72 (76)
87 cd05897 Ig2_IL1R2_like Second 99.0 2.4E-09 5.3E-14 58.7 5.7 50 2-59 30-81 (95)
88 cd05732 Ig5_NCAM-1_like Fifth 99.0 5.1E-09 1.1E-13 57.4 7.1 54 1-61 30-90 (96)
89 cd05870 Ig5_NCAM-2 Fifth immun 98.9 6.2E-09 1.4E-13 57.4 6.9 55 1-61 30-92 (98)
90 cd05765 Ig_3 Subgroup of the i 98.9 7.1E-09 1.5E-13 55.0 6.5 30 26-61 46-75 (81)
91 cd05758 Ig5_KIRREL3-like Fifth 98.9 8.7E-09 1.9E-13 56.8 6.6 54 2-61 31-93 (98)
92 cd04979 Ig_Semaphorin_C Immuno 98.9 1.5E-08 3.3E-13 54.8 7.0 52 2-60 25-78 (89)
93 cd05727 Ig2_Contactin-2-like S 98.9 5E-09 1.1E-13 57.5 4.4 52 1-59 33-86 (96)
94 smart00408 IGc2 Immunoglobulin 98.8 3.6E-08 7.9E-13 49.1 6.0 47 2-57 17-63 (63)
95 PHA02826 IL-1 receptor-like pr 98.8 2.4E-08 5.3E-13 62.9 5.6 52 2-60 164-216 (227)
96 cd05742 Ig1_VEGFR_like First i 98.8 5E-08 1.1E-12 52.2 6.0 53 2-61 18-77 (84)
97 cd05729 Ig2_FGFR_like Second i 98.7 1.2E-07 2.7E-12 50.4 7.1 53 1-60 23-78 (85)
98 cd05754 Ig3_Perlecan_like Thir 98.7 8.3E-08 1.8E-12 51.4 5.2 49 2-61 32-80 (85)
99 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 2.1E-07 4.5E-12 51.6 6.2 51 3-60 42-97 (104)
100 cd05753 Ig2_FcgammaR_like Seco 98.6 8.7E-08 1.9E-12 51.3 4.6 50 2-64 30-79 (83)
101 cd05871 Ig_Semaphorin_classIII 98.6 2.9E-07 6.3E-12 50.1 6.6 53 2-60 25-81 (91)
102 cd05882 Ig1_Necl-1 First (N-te 98.6 2.9E-07 6.3E-12 50.5 6.5 49 1-56 26-85 (95)
103 cd05845 Ig2_L1-CAM_like Second 98.6 8.5E-08 1.9E-12 52.5 4.2 49 1-57 33-83 (95)
104 cd05851 Ig3_Contactin-1 Third 98.5 3.8E-07 8.1E-12 49.3 5.1 35 80-115 2-36 (88)
105 cd05885 Ig2_Necl-4 Second immu 98.5 2.9E-07 6.4E-12 48.8 4.5 52 1-59 14-69 (80)
106 cd05752 Ig1_FcgammaR_like Frst 98.5 2.5E-07 5.3E-12 49.0 4.0 38 2-55 31-68 (78)
107 cd05861 Ig1_PDGFR-alphabeta Fr 98.5 2.2E-06 4.9E-11 45.9 7.4 25 27-57 46-70 (84)
108 PF00047 ig: Immunoglobulin do 98.4 4.6E-07 9.9E-12 45.8 4.0 43 2-52 17-64 (64)
109 cd07701 Ig1_Necl-3 First (N-te 98.4 4.4E-06 9.4E-11 45.8 7.0 26 27-58 62-87 (95)
110 cd07693 Ig1_Robo First immunog 98.3 1.2E-06 2.6E-11 48.0 4.5 36 80-116 2-37 (100)
111 cd05872 Ig_Sema4B_like Immunog 98.3 3.5E-06 7.5E-11 45.3 6.2 49 2-60 25-73 (85)
112 cd05759 Ig2_KIRREL3-like Secon 98.3 4.7E-06 1E-10 44.3 6.4 48 2-56 15-69 (82)
113 cd05717 Ig1_Necl-1-3_like Firs 98.3 8.2E-06 1.8E-10 44.5 7.3 25 28-58 63-87 (95)
114 cd05749 Ig2_Tyro3_like Second 98.3 1.6E-06 3.4E-11 46.2 4.0 28 88-115 6-34 (81)
115 smart00409 IG Immunoglobulin. 98.3 1.4E-05 3.1E-10 41.7 7.8 53 2-61 24-79 (86)
116 smart00410 IG_like Immunoglobu 98.3 1.4E-05 3.1E-10 41.7 7.8 53 2-61 24-79 (86)
117 cd04972 Ig_TrkABC_d4 Fourth do 98.3 1.7E-06 3.7E-11 46.8 4.0 31 86-116 6-36 (90)
118 cd05747 Ig5_Titin_like M5, fif 98.3 2.5E-06 5.4E-11 46.4 4.6 36 80-116 4-39 (92)
119 cd04968 Ig3_Contactin_like Thi 98.3 2.3E-06 5E-11 46.1 4.4 36 80-116 2-37 (88)
120 cd05862 Ig1_VEGFR First immuno 98.2 5.2E-06 1.1E-10 44.7 5.6 29 27-61 50-78 (86)
121 cd05762 Ig8_MLCK Eighth immuno 98.2 3.5E-06 7.6E-11 46.5 4.7 35 80-115 1-35 (98)
122 PF13895 Ig_2: Immunoglobulin 98.2 1.6E-05 3.4E-10 41.5 6.3 48 2-64 29-76 (80)
123 cd05848 Ig1_Contactin-5 First 98.2 5.7E-06 1.2E-10 45.2 4.5 35 80-115 2-39 (94)
124 PF07679 I-set: Immunoglobulin 98.1 4.9E-06 1.1E-10 44.7 4.1 36 80-116 1-36 (90)
125 cd05898 Ig5_KIRREL3 Fifth immu 98.1 1.6E-05 3.6E-10 43.8 6.1 53 3-61 33-93 (98)
126 cd05870 Ig5_NCAM-2 Fifth immun 98.1 6.8E-06 1.5E-10 45.2 4.6 34 80-115 3-36 (98)
127 PF13927 Ig_3: Immunoglobulin 98.1 8.3E-06 1.8E-10 42.0 4.5 25 24-54 51-75 (75)
128 cd05737 Ig_Myomesin_like_C C-t 98.1 9.1E-06 2E-10 44.1 4.7 31 86-116 7-37 (92)
129 cd05728 Ig4_Contactin-2-like F 98.1 5.5E-06 1.2E-10 44.4 3.6 28 88-115 7-34 (85)
130 cd05850 Ig1_Contactin-2 First 98.1 8E-06 1.7E-10 44.6 4.3 36 80-116 2-40 (94)
131 cd05849 Ig1_Contactin-1 First 98.1 1.1E-05 2.3E-10 44.1 4.4 35 80-115 2-39 (93)
132 cd05722 Ig1_Neogenin First imm 98.0 1.2E-05 2.6E-10 43.9 4.4 33 82-115 2-34 (95)
133 PHA03376 BARF1; Provisional 98.0 3.4E-05 7.3E-10 47.1 6.5 71 28-115 88-159 (221)
134 cd05774 Ig_CEACAM_D1 First imm 98.0 9.7E-05 2.1E-09 41.3 7.7 30 23-58 66-95 (105)
135 cd05758 Ig5_KIRREL3-like Fifth 98.0 2.3E-05 5.1E-10 43.0 4.8 35 81-116 3-38 (98)
136 cd05894 Ig_C5_MyBP-C C5 immuno 98.0 1.7E-05 3.7E-10 42.6 4.1 28 88-115 3-30 (86)
137 cd05869 Ig5_NCAM-1 Fifth immun 98.0 2.4E-05 5.2E-10 42.9 4.8 35 80-115 3-37 (97)
138 cd07690 Ig1_CD4 First immunogl 98.0 1.8E-05 4E-10 43.3 4.1 25 28-58 66-90 (94)
139 cd05775 Ig_SLAM-CD84_like_N N- 97.9 0.00022 4.9E-09 39.1 8.1 30 27-62 61-90 (97)
140 cd05741 Ig_CEACAM_D1_like Firs 97.9 0.00026 5.7E-09 38.1 8.0 31 25-61 55-85 (92)
141 cd05732 Ig5_NCAM-1_like Fifth 97.9 3.5E-05 7.6E-10 42.0 4.2 34 80-115 3-36 (96)
142 cd05730 Ig3_NCAM-1_like Third 97.9 3.4E-05 7.5E-10 42.0 4.1 28 88-115 11-38 (95)
143 cd05713 Ig_MOG_like Immunoglob 97.8 0.00014 3.1E-09 39.9 6.2 27 28-60 66-92 (100)
144 cd05860 Ig4_SCFR Fourth immuno 97.8 0.0003 6.5E-09 39.0 6.8 58 2-66 33-99 (101)
145 cd05718 Ig1_PVR_like First imm 97.8 0.00047 1E-08 37.6 7.7 29 27-61 62-91 (98)
146 cd05891 Ig_M-protein_C C-termi 97.7 5.9E-05 1.3E-09 41.0 3.9 29 87-115 8-36 (92)
147 cd05857 Ig2_FGFR Second immuno 97.7 5.4E-05 1.2E-09 40.3 3.6 27 89-115 3-29 (85)
148 cd05865 Ig1_NCAM-1 First immun 97.7 7.3E-05 1.6E-09 41.1 3.9 28 88-115 8-36 (96)
149 cd04975 Ig4_SCFR_like Fourth i 97.7 9.2E-05 2E-09 41.1 4.0 28 88-115 11-39 (101)
150 cd05887 Ig1_Nectin-3_like Firs 97.7 0.00062 1.3E-08 37.4 7.1 30 26-61 59-89 (96)
151 cd05886 Ig1_Nectin-1_like Firs 97.7 0.00023 5E-09 39.3 5.5 28 27-60 63-91 (99)
152 cd04967 Ig1_Contactin First Ig 97.6 0.00015 3.2E-09 39.3 4.5 36 80-116 2-40 (91)
153 cd05882 Ig1_Necl-1 First (N-te 97.6 0.00012 2.6E-09 40.2 4.1 28 88-115 5-32 (95)
154 cd05724 Ig2_Robo Second immuno 97.6 0.0001 2.2E-09 39.2 3.8 29 88-116 4-33 (86)
155 cd07701 Ig1_Necl-3 First (N-te 97.6 0.00013 2.8E-09 40.0 4.0 28 88-115 5-32 (95)
156 cd05889 Ig1_DNAM-1_like First 97.6 0.0022 4.9E-08 35.2 8.4 29 26-60 59-88 (96)
157 cd05714 Ig_CSPGs_LP Immunoglob 97.5 0.00038 8.3E-09 38.7 5.2 34 28-67 69-103 (106)
158 cd05888 Ig1_Nectin-4_like Frst 97.5 0.0009 1.9E-08 36.9 6.6 27 27-59 64-91 (100)
159 cd05845 Ig2_L1-CAM_like Second 97.5 0.00022 4.8E-09 39.1 4.1 36 80-115 3-39 (95)
160 cd05883 Ig2_Necl-2 Second immu 97.5 0.0013 2.8E-08 35.1 6.9 49 1-56 14-67 (82)
161 cd05877 Ig_LP_like Immunoglobu 97.5 0.00033 7.1E-09 38.9 4.9 34 28-67 69-103 (106)
162 cd05856 Ig2_FGFRL1-like Second 97.5 0.00015 3.2E-09 38.1 3.2 26 90-115 4-29 (82)
163 cd05752 Ig1_FcgammaR_like Frst 97.5 0.00037 8E-09 36.8 4.6 29 88-116 8-37 (78)
164 cd05754 Ig3_Perlecan_like Thir 97.5 0.00043 9.3E-09 36.9 4.8 30 86-115 7-37 (85)
165 cd05881 Ig1_Necl-2 First (N-te 97.5 0.0017 3.8E-08 35.6 7.0 23 28-56 63-85 (95)
166 cd05859 Ig4_PDGFR-alpha Fourth 97.4 0.00024 5.2E-09 39.4 3.7 28 88-115 11-38 (101)
167 cd05761 Ig2_Necl-1-4_like Seco 97.4 0.001 2.2E-08 35.3 5.7 48 2-57 15-69 (82)
168 cd05740 Ig_CEACAM_D4 Fourth im 97.4 0.00036 7.7E-09 37.9 4.0 27 88-115 11-37 (91)
169 cd05900 Ig_Aggrecan Immunoglob 97.4 0.0032 6.9E-08 35.6 7.9 25 27-57 74-98 (112)
170 cd05773 Ig8_hNephrin_like Eigh 97.4 0.0004 8.7E-09 39.0 4.2 36 80-115 5-43 (109)
171 cd05751 Ig1_LILRB1_like First 97.4 0.00028 6E-09 38.3 3.2 24 27-56 53-76 (91)
172 cd05866 Ig1_NCAM-2 First immun 97.3 0.00052 1.1E-08 37.4 4.0 27 88-115 8-34 (92)
173 KOG3515|consensus 97.3 0.0004 8.8E-09 50.5 4.4 74 28-115 164-242 (741)
174 cd05878 Ig_Aggrecan_like Immun 97.3 0.005 1.1E-07 34.6 7.7 33 28-66 73-106 (110)
175 cd05898 Ig5_KIRREL3 Fifth immu 97.2 0.0015 3.3E-08 36.0 5.1 28 88-115 9-37 (98)
176 cd07705 Ig2_Necl-1 Second immu 97.2 0.0018 3.8E-08 34.5 5.0 51 2-56 15-69 (83)
177 cd04979 Ig_Semaphorin_C Immuno 97.2 0.00088 1.9E-08 36.0 3.9 28 88-116 4-31 (89)
178 cd05873 Ig_Sema4D_like Immunog 97.1 0.00098 2.1E-08 36.0 3.9 28 88-116 4-31 (87)
179 cd04977 Ig1_NCAM-1_like First 97.1 0.0013 2.7E-08 35.7 4.3 27 88-115 8-34 (92)
180 cd05879 Ig_P0 Immunoglobulin ( 97.1 0.0016 3.4E-08 37.1 4.6 24 28-57 81-104 (116)
181 cd05756 Ig1_IL1R_like First im 97.1 0.00093 2E-08 36.5 3.4 29 88-116 7-40 (94)
182 cd05717 Ig1_Necl-1-3_like Firs 97.0 0.0017 3.6E-08 35.3 4.2 28 88-115 5-32 (95)
183 cd05901 Ig_Versican Immunoglob 97.0 0.0044 9.5E-08 35.3 5.9 34 28-67 80-114 (117)
184 cd00098 IgC Immunoglobulin Con 97.0 0.00074 1.6E-08 36.6 2.5 49 2-57 30-86 (95)
185 cd00096 Ig Immunoglobulin doma 97.0 0.0023 5.1E-08 31.4 4.2 48 2-56 13-66 (74)
186 cd05902 Ig_Neurocan Immunoglob 97.0 0.0089 1.9E-07 33.7 6.7 23 28-56 73-95 (110)
187 cd04973 Ig1_FGFR First immunog 96.9 0.0021 4.6E-08 33.7 4.0 27 88-115 2-28 (79)
188 PHA02633 hypothetical protein; 96.9 0.004 8.6E-08 31.2 4.6 37 26-68 17-54 (63)
189 PF07354 Sp38: Zona-pellucida- 96.9 0.0024 5.3E-08 41.0 4.5 48 2-56 13-60 (271)
190 cd05729 Ig2_FGFR_like Second i 96.9 0.0025 5.5E-08 33.5 3.9 26 90-115 4-29 (85)
191 PF13895 Ig_2: Immunoglobulin 96.7 0.0032 7E-08 32.5 3.7 34 80-116 2-35 (80)
192 cd05884 Ig2_Necl-3 Second immu 96.7 0.0085 1.8E-07 31.9 5.0 48 2-56 15-69 (83)
193 cd05846 Ig1_MRC-OX-2_like Firs 96.7 0.007 1.5E-07 33.0 4.8 28 28-61 62-90 (97)
194 cd05880 Ig_EVA1 Immunoglobulin 96.6 0.0028 6.1E-08 35.9 3.1 24 28-57 80-103 (115)
195 cd07691 Ig_CD3_gamma_delta Imm 96.6 0.012 2.7E-07 30.1 4.9 37 3-54 18-54 (69)
196 PHA02987 Ig domain OX-2-like p 96.6 0.023 4.9E-07 34.9 6.8 39 25-69 83-124 (189)
197 smart00408 IGc2 Immunoglobulin 96.6 0.0029 6.4E-08 30.7 2.7 23 94-116 1-23 (63)
198 cd00099 IgV Immunoglobulin var 96.5 0.0028 6E-08 34.9 2.5 24 28-57 68-91 (105)
199 cd05715 Ig_P0-like Immunoglobu 96.4 0.0046 9.9E-08 35.0 3.1 24 28-57 81-104 (116)
200 cd04983 IgV_TCR_alpha_like Imm 96.4 0.0045 9.7E-08 34.4 2.9 23 28-56 71-93 (109)
201 cd05871 Ig_Semaphorin_classIII 96.2 0.01 2.3E-07 32.1 3.7 26 89-115 5-30 (91)
202 PF11465 Receptor_2B4: Natural 96.2 0.057 1.2E-06 30.2 6.4 38 23-66 67-104 (108)
203 cd05727 Ig2_Contactin-2-like S 96.2 0.011 2.5E-07 32.4 3.7 28 88-115 11-39 (96)
204 cd07694 Ig2_CD4 Second immunog 96.1 0.076 1.6E-06 28.7 6.6 24 26-55 50-73 (88)
205 smart00409 IG Immunoglobulin. 96.1 0.017 3.8E-07 29.6 4.1 29 88-116 2-30 (86)
206 smart00410 IG_like Immunoglobu 96.1 0.017 3.8E-07 29.6 4.1 29 88-116 2-30 (86)
207 PF07686 V-set: Immunoglobulin 96.0 0.022 4.8E-07 31.3 4.6 22 28-55 80-101 (114)
208 PF13927 Ig_3: Immunoglobulin 96.0 0.011 2.4E-07 29.9 2.9 34 80-115 2-36 (75)
209 PF00047 ig: Immunoglobulin do 95.8 0.014 3E-07 29.0 2.8 22 95-116 1-23 (64)
210 cd04980 IgV_L_kappa Immunoglob 95.8 0.037 7.9E-07 30.6 4.7 28 88-115 8-36 (106)
211 PF08205 C2-set_2: CD80-like C 95.8 0.0093 2E-07 31.9 2.2 22 95-116 14-36 (89)
212 KOG3515|consensus 95.7 0.024 5.1E-07 41.8 4.7 96 2-116 38-135 (741)
213 cd05899 IgV_TCR_beta Immunoglo 95.6 0.013 2.9E-07 32.6 2.6 23 28-56 73-95 (110)
214 cd04980 IgV_L_kappa Immunoglob 95.6 0.011 2.4E-07 32.7 2.2 22 28-55 72-93 (106)
215 cd05716 Ig_pIgR Immunoglobulin 95.6 0.026 5.6E-07 30.7 3.5 23 28-56 65-87 (98)
216 smart00407 IGc1 Immunoglobulin 95.5 0.073 1.6E-06 27.6 5.0 47 3-56 17-71 (75)
217 cd04984 IgV_L_lambda Immunoglo 95.5 0.018 3.8E-07 31.4 2.8 22 28-55 64-85 (98)
218 smart00406 IGv Immunoglobulin 95.3 0.011 2.4E-07 30.6 1.5 18 28-51 63-80 (81)
219 cd05753 Ig2_FcgammaR_like Seco 95.3 0.049 1.1E-06 28.9 3.9 26 90-115 9-35 (83)
220 cd05711 Ig_FcalphaRI Immunoglo 95.1 0.049 1.1E-06 29.6 3.6 22 28-55 56-77 (94)
221 KOG1480|consensus 95.0 0.012 2.6E-07 43.2 1.3 51 3-61 161-211 (909)
222 cd05755 Ig2_ICAM-1_like Second 94.9 0.065 1.4E-06 29.7 3.8 26 90-115 11-39 (100)
223 cd05770 IgC_beta2m Class I maj 94.9 0.081 1.7E-06 28.9 4.1 48 3-55 33-82 (93)
224 cd04982 IgV_TCR_gamma Immunogl 94.7 0.027 5.9E-07 31.6 2.1 22 28-55 78-99 (116)
225 cd05881 Ig1_Necl-2 First (N-te 94.7 0.092 2E-06 28.8 4.0 28 88-115 5-32 (95)
226 cd05755 Ig2_ICAM-1_like Second 94.6 0.11 2.4E-06 28.8 4.3 48 4-58 36-87 (100)
227 cd05872 Ig_Sema4B_like Immunog 94.6 0.054 1.2E-06 29.1 3.0 28 88-116 4-31 (85)
228 cd05720 Ig_CD8_alpha Immunoglo 94.4 0.033 7.2E-07 30.8 1.9 21 28-54 70-90 (104)
229 cd07700 IgV_CD8_beta Immunoglo 94.4 0.071 1.5E-06 29.6 3.2 22 28-55 73-94 (107)
230 cd05766 IgC_MHC_II_beta Class 94.3 0.13 2.9E-06 28.0 4.1 50 3-56 32-83 (94)
231 cd07706 IgV_TCR_delta Immunogl 94.3 0.041 8.9E-07 31.0 2.1 22 28-55 73-94 (116)
232 cd07692 Ig_CD3_epsilon Immunog 94.1 0.097 2.1E-06 26.6 3.1 37 4-56 21-57 (65)
233 cd05767 IgC_MHC_II_alpha Class 94.1 0.11 2.3E-06 28.4 3.5 49 3-56 33-84 (94)
234 cd05712 Ig_Siglec_N Immunoglob 94.1 0.071 1.5E-06 30.2 2.9 22 28-55 81-102 (119)
235 PF08205 C2-set_2: CD80-like C 93.8 0.34 7.4E-06 25.7 5.2 13 44-56 72-84 (89)
236 cd07704 Ig2_Nectin-3-4_like Se 93.4 0.27 5.8E-06 27.1 4.2 27 89-115 10-38 (97)
237 cd07698 IgC_MHC_I_alpha3 Class 93.3 0.27 5.9E-06 26.5 4.2 13 44-56 71-83 (93)
238 cd05772 IgC_SIRP Signal-regula 93.3 0.26 5.7E-06 27.8 4.2 13 3-16 39-51 (111)
239 cd05860 Ig4_SCFR Fourth immuno 92.9 0.35 7.6E-06 26.9 4.2 28 88-115 11-39 (101)
240 cd07694 Ig2_CD4 Second immunog 92.8 0.28 6.2E-06 26.5 3.7 26 90-115 9-36 (88)
241 cd00098 IgC Immunoglobulin Con 92.2 0.23 4.9E-06 26.6 3.0 23 93-115 11-35 (95)
242 PF07654 C1-set: Immunoglobuli 92.1 0.24 5.2E-06 26.1 2.9 44 3-56 26-77 (83)
243 cd07699 IgC_L Immunoglobulin C 92.0 0.19 4.1E-06 27.7 2.5 50 3-56 35-89 (100)
244 cd04981 IgV_H Immunoglobulin ( 91.9 0.15 3.3E-06 28.9 2.1 21 28-54 77-97 (117)
245 cd05757 Ig2_IL1R_like Second i 91.6 0.23 5.1E-06 26.9 2.5 27 89-115 4-35 (92)
246 cd07697 IgC_TCR_gamma T cell r 91.3 0.3 6.6E-06 26.8 2.8 13 3-16 34-46 (96)
247 cd05719 Ig2_PVR_like Second im 90.8 0.37 8E-06 26.3 2.8 21 95-115 15-36 (95)
248 cd05847 IgC_CH2_IgE CH2 domain 90.7 0.84 1.8E-05 24.9 4.2 13 44-56 74-86 (94)
249 cd05751 Ig1_LILRB1_like First 90.2 0.73 1.6E-05 24.7 3.7 33 80-115 3-35 (91)
250 cd07703 Ig2_Nectin-2_like Seco 89.9 0.44 9.5E-06 26.1 2.7 20 96-115 16-36 (95)
251 PF08204 V-set_CD47: CD47 immu 89.9 0.51 1.1E-05 27.5 3.0 22 45-66 97-119 (130)
252 PHA02982 hypothetical protein; 89.2 4.1 8.9E-05 25.9 7.0 29 26-60 99-127 (251)
253 cd05711 Ig_FcalphaRI Immunoglo 87.0 1.6 3.6E-05 23.6 3.7 33 80-115 2-34 (94)
254 PHA02987 Ig domain OX-2-like p 86.5 1.7 3.7E-05 26.9 3.9 29 88-116 23-52 (189)
255 cd05768 IgC_CH4 CH4 domain (fo 86.1 0.69 1.5E-05 25.6 1.9 22 94-115 15-38 (102)
256 cd04985 IgC_CH1 CH1 domain (fi 85.2 0.73 1.6E-05 25.2 1.7 10 3-13 34-43 (95)
257 cd07698 IgC_MHC_I_alpha3 Class 83.5 1.8 3.8E-05 23.3 2.8 21 95-115 14-36 (93)
258 PHA03042 CD47-like protein; Pr 83.0 3.1 6.7E-05 27.4 4.1 43 3-57 52-94 (286)
259 cd05890 Ig2_Nectin-1_like Seco 82.8 1.7 3.6E-05 24.0 2.4 20 96-115 21-41 (98)
260 PF05790 C2-set: Immunoglobuli 81.6 6 0.00013 20.9 6.6 23 28-56 44-67 (80)
261 PHA03189 UL14 tegument protein 80.4 5.2 0.00011 26.9 4.4 23 44-66 144-167 (348)
262 cd07696 IgC_CH3 CH3 domain (th 79.2 1.7 3.8E-05 23.7 1.8 24 92-115 11-37 (96)
263 PHA02914 Immunoglobulin-like d 74.0 16 0.00036 25.7 5.5 27 24-56 343-369 (500)
264 cd04986 IgC_CH2 CH2 domain (se 73.8 4.9 0.00011 22.2 2.6 24 92-115 16-42 (99)
265 cd05769 IgC_TCR_beta T cell re 71.6 4.4 9.6E-05 23.0 2.2 22 94-115 17-40 (115)
266 PF11049 KSHV_K1: Glycoprotein 70.8 6.8 0.00015 20.0 2.5 36 3-56 12-47 (71)
267 cd07689 Ig2_VCAM-1 Second immu 70.3 8.2 0.00018 21.4 3.0 23 93-115 13-38 (99)
268 cd05721 IgV_CTLA-4 Immunoglobu 69.7 5.7 0.00012 22.7 2.3 22 28-55 75-96 (115)
269 PF02480 Herpes_gE: Alphaherpe 66.7 6.5 0.00014 27.9 2.6 86 25-116 87-189 (439)
270 PHA03052 Hypothetical protein; 66.7 16 0.00035 18.8 3.7 28 88-115 5-35 (69)
271 PHA03269 envelope glycoprotein 66.3 48 0.001 24.1 6.7 71 28-115 290-365 (566)
272 PHA03273 envelope glycoprotein 65.6 48 0.001 23.9 7.5 70 29-115 200-273 (486)
273 KOG4597|consensus 59.9 5.4 0.00012 28.5 1.2 28 88-115 204-231 (560)
274 PHA03270 envelope glycoprotein 59.7 62 0.0013 23.2 7.3 70 29-115 184-257 (466)
275 PHA03282 envelope glycoprotein 58.4 12 0.00025 26.9 2.6 31 19-55 116-146 (540)
276 PHA03283 envelope glycoprotein 46.9 1.2E+02 0.0025 22.5 9.9 36 27-68 134-170 (542)
277 PHA02914 Immunoglobulin-like d 46.1 92 0.002 22.2 5.2 22 28-55 82-103 (500)
278 PF15096 G6B: G6B family 43.8 21 0.00045 22.4 1.8 15 42-56 83-97 (224)
279 PF06328 Lep_receptor_Ig: Ig-l 36.9 72 0.0016 17.2 3.6 27 90-116 13-44 (89)
280 COG3738 Uncharacterized protei 36.4 36 0.00078 21.0 2.0 34 3-36 146-179 (200)
281 COG5475 Uncharacterized small 34.8 63 0.0014 15.9 4.2 26 28-61 19-44 (60)
282 PF06832 BiPBP_C: Penicillin-B 32.1 84 0.0018 16.5 6.1 44 2-61 43-86 (89)
283 PHA02935 Hypothetical protein; 31.9 1.3E+02 0.0029 19.2 4.1 32 29-66 104-135 (349)
284 PF13220 DUF4028: Protein of u 31.8 44 0.00095 16.3 1.5 16 44-59 9-24 (65)
285 PF04004 Leo1: Leo1-like prote 31.1 1.1E+02 0.0023 18.8 3.5 29 2-31 47-79 (171)
286 COG4953 PbpC Membrane carboxyp 30.0 2.1E+02 0.0045 22.1 5.3 24 43-66 708-731 (733)
287 PHA02865 MHC-like TNF binding 29.6 69 0.0015 22.1 2.7 14 43-56 291-304 (338)
288 PHA03281 envelope glycoprotein 25.9 2.9E+02 0.0063 20.8 10.4 84 26-116 297-394 (642)
289 KOG1026|consensus 25.8 50 0.0011 25.5 1.7 27 89-115 201-227 (774)
290 PHA03286 envelope glycoprotein 25.3 2.7E+02 0.0059 20.3 9.2 83 27-116 127-225 (492)
291 TIGR00864 PCC polycystin catio 25.2 5.6E+02 0.012 23.8 7.8 62 44-115 1838-1902(2740)
292 PHA03270 envelope glycoprotein 24.3 2.8E+02 0.0061 20.1 6.8 12 3-15 253-264 (466)
293 PF01688 Herpes_gI: Alphaherpe 23.5 89 0.0019 19.1 2.2 23 28-56 125-147 (161)
294 PF10461 Peptidase_S68: Peptid 23.5 36 0.00077 15.0 0.4 7 110-116 24-30 (35)
295 PF10430 Ig_Tie2_1: Tie-2 Ig-l 21.4 98 0.0021 16.9 1.9 13 44-56 74-87 (96)
296 PRK14051 negative regulator Gr 20.4 1.3E+02 0.0028 17.1 2.2 19 92-110 80-98 (123)
297 PF02440 Adeno_E3_CR1: Adenovi 20.4 1.4E+02 0.003 15.1 2.3 19 93-115 3-21 (63)
No 1
>KOG3513|consensus
Probab=99.69 E-value=3.9e-16 Score=112.59 Aligned_cols=99 Identities=27% Similarity=0.552 Sum_probs=81.2
Q ss_pred CcEEEEEccCCeeeecc-ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccC
Q psy11568 1 MYVLLWLIRDNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQ 78 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~-~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~ 78 (116)
.|.|+| ++||+++... .+.+.....++|.|.++... |+|.|+|.|+|.+|...+ ..|.|.+. +
T Consensus 360 ~p~v~W-lkNg~pl~~~~r~~~~~i~~g~L~is~v~~~------dsg~YQC~A~Nk~G~i~anA~L~V~a~--------~ 424 (1051)
T KOG3513|consen 360 NPTVKW-LKNGEPLEPAERDPRYKIDDGTLIISNVQES------DSGVYQCIAENKYGTIYANAELKVLAS--------A 424 (1051)
T ss_pred CCceEE-eeCCeecCccCCCcceEEeCCEEEEEecccc------cCeEEEeeeecccceEeeeeEEEEEcc--------C
Confidence 389999 9999999742 33458889999999999765 999999999999999986 55666554 3
Q ss_pred CCceEecCC-CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 79 GPLFRIEPP-YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 79 ~p~~~~~~~-~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.|...+. ....+..|.++.+.|...+.|.|.++|.
T Consensus 425 -P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~ 461 (1051)
T KOG3513|consen 425 -PVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL 461 (1051)
T ss_pred -CCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence 77766662 3346677999999999999999999996
No 2
>KOG3513|consensus
Probab=99.68 E-value=5.5e-16 Score=111.83 Aligned_cols=96 Identities=25% Similarity=0.380 Sum_probs=77.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG 79 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~ 79 (116)
.|+|.|++.+|+++.. ..+....+..|.|.++..+ |+|.|+|.|.|..|.... ..+.|.+.
T Consensus 270 ~P~i~W~k~~g~~~~~--r~~~~~~~~vL~I~nv~~~------D~G~Y~C~AeN~~G~~~~~~~v~v~a~---------- 331 (1051)
T KOG3513|consen 270 TPQIKWRKVDGKPPPR--RATYSNYGKVLKIPNVQYE------DAGEYECIAENSRGSATHSGHVTVYAP---------- 331 (1051)
T ss_pred CCcEEEEeCCCCCCCc--ceeeeccccEEEecccCcC------CCeEEEEEEecccccceeeEEEEEecC----------
Confidence 4899995555655541 2233344568999999655 999999999999996664 66767775
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.++..+ ++..+..|+++.+.|.+.|.|.|.++|+
T Consensus 332 P~w~~~~-~d~~~~~gs~v~~eC~a~g~P~p~v~Wl 366 (1051)
T KOG3513|consen 332 PYWLQKP-QDTEADTGSNVTLECKASGKPNPTVKWL 366 (1051)
T ss_pred chhhccc-ceeEecCCCCeEEEEEecCCCCCceEEe
Confidence 8998887 8889999999999999999999999997
No 3
>KOG4221|consensus
Probab=99.55 E-value=4.3e-14 Score=102.85 Aligned_cols=97 Identities=28% Similarity=0.461 Sum_probs=79.5
Q ss_pred CcEEEEEccCCeeeeccccceEEee-CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccC
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALS-NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQ 78 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~ 78 (116)
.|+|.| ++||+.+...+ .++.+. .+.|.|++++.. |+|.|+|.|+|..-... +..|+|.++
T Consensus 266 ~p~v~W-lrng~~i~~ds-~rivl~g~~slliS~a~~~------dSg~YtC~Atn~~D~idasaev~V~a~--------- 328 (1381)
T KOG4221|consen 266 KPSVKW-LRNGEKISVDS-YRIVLVGGSSLLISNATDD------DSGKYTCRATNTNDSIDASAEVTVLAP--------- 328 (1381)
T ss_pred CCceEE-eeCCeeeeecc-eEEEEecccceEEeccccc------cCceEEEEecCCCcccccceEEEEEcC---------
Confidence 489999 99999998644 565554 568999999776 99999999999655555 366777775
Q ss_pred CCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 79 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
|-|...| ..+.+.++..+.|+|.+.|.|.|.+.|+.
T Consensus 329 -P~~~~~p-~~l~A~e~~die~ec~~~g~p~p~v~w~k 364 (1381)
T KOG4221|consen 329 -PGFTKAP-TTLVAHESMDIEFECPVSGKPIPTVRWYK 364 (1381)
T ss_pred -CCCCCCC-cceeeeeccceeEeCCCCCCCcceEEEEe
Confidence 7777776 78888889999999999999999999973
No 4
>KOG4222|consensus
Probab=99.52 E-value=2.9e-14 Score=103.17 Aligned_cols=98 Identities=21% Similarity=0.442 Sum_probs=78.5
Q ss_pred cEEEEEccCCeeeecc-ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCC
Q psy11568 2 YVLLWLIRDNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~-~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p 80 (116)
|.|+| .|+|+++... ...+....+|.|.|.++++. |+|+|.|+++|.+|...+.. +.+.++. .|
T Consensus 162 ptvSw-~Kdg~pl~~~~~~~~~lisgG~LlIsnvrks------D~GtY~CVatNmvG~ReS~~------A~lsv~e--~P 226 (1281)
T KOG4222|consen 162 PTVSW-VKDGKPLDHYDVPIIALISGGNLLISNVRKS------DEGTYACVATNMVGERESIP------ARLSVQE--KP 226 (1281)
T ss_pred Cccee-ecCCCccccccceeEEEecCCcEEEeccccC------CCceeeeeeccccccccccc------ceeeecc--CC
Confidence 78999 9999998742 23344677889999999776 99999999999999888743 2333332 27
Q ss_pred ceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
.|...+ .+..+..|..+.+.|.+.|.|.|.+.|.
T Consensus 227 ~f~~rp-~~~~v~~g~~~~f~c~v~GdP~P~Vrwk 260 (1281)
T KOG4222|consen 227 WFWKRP-KDLAVLVGAAAEFDCRVGGDPQPTVRWK 260 (1281)
T ss_pred cccccc-ccceeecccccccccccCCCCCCceeee
Confidence 776666 8888999999999999999999999995
No 5
>KOG4194|consensus
Probab=99.52 E-value=7.6e-14 Score=96.34 Aligned_cols=97 Identities=23% Similarity=0.417 Sum_probs=74.3
Q ss_pred CcEEEEEccCCee-eeccccce-EEe-eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeec
Q psy11568 1 MYVLLWLIRDNTV-IAYVKDLR-IAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLD 76 (116)
Q Consensus 1 ~p~v~W~~~~g~~-~~~~~~~~-~~~-~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~ 76 (116)
.|+|.| -|+|.. ++.....| ... +++...|.|++.+ |+|.|+|.|.|.+|...+ .++.|-..
T Consensus 641 ~PeIaw-qkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~e------D~GiYtC~A~n~AG~isanAtL~V~e~------- 706 (873)
T KOG4194|consen 641 RPEIAW-QKDGGTDFPAARERRLHVMPEDDVFFITNVKIE------DQGIYTCTAQNVAGQISANATLTVLET------- 706 (873)
T ss_pred Ccceee-hhcCCCCCchhhhheeeecCCCCEEEEeccccc------ccceeEEeeeccccceeeceEEEEecC-------
Confidence 489999 666554 55433223 333 3558999999777 999999999999998886 45544442
Q ss_pred cCCCceEecCCCeEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568 77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPT-PKIEWL 115 (116)
Q Consensus 77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W~ 115 (116)
|.+..+. ....+..|+++.+.|.+.|.|+ |.+.|+
T Consensus 707 ---p~f~~PL-~~~~V~~get~vlqC~a~~~~a~pr~~W~ 742 (873)
T KOG4194|consen 707 ---PSFSIPL-EDQLVVVGETLVLQCLAEGAPADPRLEWF 742 (873)
T ss_pred ---Ccccccc-cceEEEecceEEEEEecCCCCCCcccccc
Confidence 6776665 7788889999999999999997 999997
No 6
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.46 E-value=1e-12 Score=69.30 Aligned_cols=58 Identities=28% Similarity=0.498 Sum_probs=45.0
Q ss_pred CcEEEEEccCCeeeeccc-cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~ 65 (116)
.|.++| +++|.++.... ..+....++.|.|.++..+ |+|.|.|.|.|..|...+ ..|.
T Consensus 15 ~p~i~W-~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 15 TPNITW-SINGAPIEGTDPDPRRHVSSGALILTDVQPS------DTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEE-EECCEECCCCCCCceEEeeCCEEEECCCChh------hCEEEEEEEECCCCeEEEEEEEE
Confidence 378999 89999886432 2245566789999999765 999999999999998875 4343
No 7
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.45 E-value=8.7e-13 Score=69.46 Aligned_cols=53 Identities=32% Similarity=0.548 Sum_probs=40.8
Q ss_pred CcEEEEEccCCeeeeccccceEE--eeC-C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA--LSN-G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~--~~~-~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.|+| +++|+++....+ ++. ..+ + +|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 12 ~P~i~W-~k~~~~i~~~~~-r~~~~~~~~g~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~ 69 (75)
T cd05892 12 PPKIFW-KRNNEMVQYNTD-RISLYQDNSGRVTLLIKNVNKK------DAGWYTVSAVNEAGVATC 69 (75)
T ss_pred CCeEEE-EECCEECcCCCC-eEEEEEcCCCcEEEEECCCChh------hCEEEEEEEEcCcCeEEE
Confidence 489999 889998864222 332 222 2 6999999766 999999999999998875
No 8
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.42 E-value=3.2e-12 Score=70.11 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=46.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v 66 (116)
+|.++| ++||.++....+.++...++.|.|.++.. ..|+|.|.|.|.|..|...+..+.+
T Consensus 33 ~p~i~W-~~~g~~l~~~~~~~~~~~~g~L~I~~~~~-----~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 33 PATYRW-KMNGTEIKFAPESRYTLVAGNLVINNPQK-----ARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCEEEE-EECCEECccCCCceEEEECCeEEEccCCc-----cCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 488999 89999886444445666778999988642 2399999999999999988754443
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.42 E-value=6.4e-12 Score=82.95 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=64.8
Q ss_pred CcEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-E--E--EEEEeCcEeee
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-R--F--VHVKAGSVVSL 74 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~--~--~~v~~~~~~~~ 74 (116)
+|.|+| ++++. +. ..+.. ..++.|.|.++..+ |+|.|+|.+.|..|.... . . |.|..+
T Consensus 155 ~~~i~W-~k~~~-~~---~~r~~~~~~~~L~i~~v~~~------d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~----- 218 (326)
T PHA02785 155 NADIIW-SGHRR-LR---NKRLKQRTPGIITIEDVRKN------DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR----- 218 (326)
T ss_pred CceEEE-ccCCc-cC---CcceEecCCCeEEEeecChh------hCeEEEEEEEeccCCEEEeEEEEEEEEEecc-----
Confidence 368999 66643 22 22332 34578999999766 999999999999876542 2 2 222211
Q ss_pred eccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc---eeEEe
Q psy11568 75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP---KIEWL 115 (116)
Q Consensus 75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p---~i~W~ 115 (116)
. .|..+..| ....+..|+.+.|.|.+.|.|.| .+.|+
T Consensus 219 --~-~pp~~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~ 258 (326)
T PHA02785 219 --I-IPPTMQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWI 258 (326)
T ss_pred --C-CCceecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEE
Confidence 1 13334444 66777889999999999998864 79996
No 10
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.42 E-value=1.7e-12 Score=68.02 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=41.7
Q ss_pred CcEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| ++++..+.. +.++. ..+++|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 15 ~p~v~W-~k~~~~l~~--~~r~~~~~~g~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~ 67 (73)
T cd05852 15 KPKFSW-SKGTELLVN--NSRISIWDDGSLEILNITKL------DEGSYTCFAENNRGKANS 67 (73)
T ss_pred CCEEEE-EeCCEeccc--CCCEEEcCCCEEEECcCChh------HCEEEEEEEECCCCceeE
Confidence 378999 888887753 23443 45679999999766 999999999999998875
No 11
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.41 E-value=2.2e-12 Score=70.78 Aligned_cols=57 Identities=35% Similarity=0.511 Sum_probs=44.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~ 63 (116)
.|.|+| ++||.++......++...++.|.|.++.. ..|+|.|+|.|.|..|...+..
T Consensus 33 ~P~i~W-~k~g~~l~~~~~~~~~~~~g~L~i~~~~~-----~~D~G~Y~C~A~N~~G~~~S~~ 89 (94)
T cd05848 33 VPTYRW-LRNGTEIDTESDYRYSLIDGNLIISNPSE-----VKDSGRYQCLATNSIGSILSRE 89 (94)
T ss_pred CCEEEE-EECCeECccCCCceEEeeCCeEEEccCCc-----cCcCEEEEEEEEcCCCeEEecc
Confidence 489999 89999886433445566678899988742 2399999999999999887643
No 12
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.41 E-value=2.1e-12 Score=68.03 Aligned_cols=53 Identities=23% Similarity=0.442 Sum_probs=40.4
Q ss_pred CcEEEEEccCCeeeeccccceEEe--eC-C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIAL--SN-G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~--~~-~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|+|+| ++++.++.... .++.. .+ + .|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 12 ~P~v~W-~k~~~~l~~~~-~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~ 69 (75)
T cd05893 12 HPQIFW-KKENESLTHNT-DRVSMHQDNCGYICLLIQGATKE------DAGWYTVSAKNEAGIVSC 69 (75)
T ss_pred CCEEEE-EECCEECCCCC-CeEEEEEcCCCEEEEEECCCCHH------HCEEEEEEEEcCCCEEEE
Confidence 489999 89988886422 23333 22 2 5899999766 999999999999998875
No 13
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=4.3e-12 Score=67.15 Aligned_cols=63 Identities=24% Similarity=0.404 Sum_probs=44.4
Q ss_pred CcEEEEEccCCeeeeccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v 66 (116)
+|+|+| +++|.++...++.+. ...++.|.|..+..++ ...|+|.|+|.|.|..|...+..++|
T Consensus 12 ~P~i~W-~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 12 PPSFSW-TRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEK--AEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CCeEEE-EECCeECCCcCCCCEEEeCCCceEEEeccccCC--CCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 489999 899998743333233 3346788888876431 13478999999999999888765543
No 14
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.40 E-value=2.7e-12 Score=66.90 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=43.7
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~ 65 (116)
+|.++| ++||+++... .+....++.|.|.++..+ |+|.|+|.|.|..|... ..++.
T Consensus 12 ~p~v~W-~k~g~~l~~~--~~~~~~~~~L~I~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~ 68 (71)
T cd04976 12 PPEIQW-YKNGKLISEK--NRTKKSGHSLTIKDVTEE------DAGNYTVVLTNKQAKLEKRLTFT 68 (71)
T ss_pred CCEEEE-EECCEECCCC--CEEEcCCCEEEECcCCHH------HCEEEEEEEEcCCccEEEEEEEE
Confidence 488999 8899988642 345556678999999766 99999999999998765 34443
No 15
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.39 E-value=3.8e-12 Score=67.17 Aligned_cols=54 Identities=26% Similarity=0.496 Sum_probs=41.9
Q ss_pred CcEEEEEccCCeeeecccc-ceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.|+| +++|+++...+. ......++.|.|.++... |+|.|+|.|.|..|...+
T Consensus 15 ~P~i~W-~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd05868 15 KPSISW-LTNGVPIEIAPTDPSRKVDGDTIIFSKVQER------SSAVYQCNASNEYGYLLA 69 (76)
T ss_pred CCeEEE-EECCEEccccCCCceEEecCCEEEECCCCHh------hCEEEEEEEEcCCCEEEE
Confidence 489999 889998864222 223345568999999655 999999999999998885
No 16
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.39 E-value=2e-12 Score=66.59 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=41.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v 66 (116)
+|.++| +|||+++.. + ...+.|.|.++..+ |+|.|+|.|.|..|.... .++.|
T Consensus 12 ~P~v~W-~kdg~~l~~--~----~~~~~L~i~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 12 PPEFQW-YKDGKLISG--K----HSQHSLQIKDVTEA------SAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CCEEEE-EECCEECcc--c----CCcCEEEECCCCHH------HCEEEEEEEEECCccEEEEEEEEE
Confidence 489999 999998852 1 13458999999766 999999999999987653 44443
No 17
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.39 E-value=3e-12 Score=66.52 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=40.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.++| ++||+++... .+ ...+..|.|.++..+ |+|.|+|.|.|..|....
T Consensus 12 ~P~v~W-~k~g~~l~~~--~~-~~~~~~L~I~~v~~~------D~G~YtC~a~N~~G~~~~ 62 (70)
T cd05864 12 PPEVKW-YKNGQLIVLN--HT-FKRGVHLTIYEVTEK------DAGNYTVVLTNPITKEEQ 62 (70)
T ss_pred CCEEEE-EECCEECCCC--CE-EccCCEEEECcCCHH------HCEEEEEEEEECCCceee
Confidence 489999 9999998632 22 233458999999766 999999999999997663
No 18
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.39 E-value=3.9e-12 Score=67.94 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=40.4
Q ss_pred CcEEEEEccCCeeeeccccceEE--e-------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA--L-------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~--~-------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| ++||+++......... . ..+.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 12 ~P~v~W-~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 12 KPTLTW-YHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHV------NNGNYTLVASNEYGQDSK 74 (81)
T ss_pred CCcEEE-EECCEECcCCCceeEEEEeecccccccEEEEEECCCCcc------cCeEEEEEEEeCCCCeee
Confidence 489999 9999998753322111 1 1236999999765 999999999999998774
No 19
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.38 E-value=4.1e-12 Score=68.30 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=45.8
Q ss_pred cEEEEEccCCeeeec-cccceEEe-----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeC
Q psy11568 2 YVLLWLIRDNTVIAY-VKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAG 69 (116)
Q Consensus 2 p~v~W~~~~g~~~~~-~~~~~~~~-----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~ 69 (116)
+.+.| ++||+++.. ..+.++.. ..+.|.|.++... |+|.|+|.|.|..+...+ ..|.|..+
T Consensus 17 ~~~~W-~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~------dsG~YtC~a~n~~~~~~a~a~L~V~~p 84 (85)
T cd05853 17 IVFTW-SFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLK------HAGKYVCMVQTSVDKLSAAADLIVRGP 84 (85)
T ss_pred cEEEE-EECCEECcccCCCccEEEeccCCCCCcEEEecCCHH------HCEEEEEEEEcccCceEEEEEEEEecC
Confidence 67899 999999963 22323333 3458999999766 999999999999988874 55666543
No 20
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.38 E-value=1.3e-11 Score=77.59 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=49.3
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA 104 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~ 104 (116)
++.|.|.++..+ |+|.|.|.+.|..+.... ..|.|.. +. ....+.+|+.+.|.|.+
T Consensus 97 ~~~L~I~~v~~~------DsG~Y~C~a~N~~~~~~~~i~L~V~~-----------~~------~~~~~~~G~~v~L~C~~ 153 (227)
T PHA02826 97 SENLWIGNVINI------DEGIYICTISSGNICEESTIRLTFDS-----------GT------INYQFNSGKDSKLHCYG 153 (227)
T ss_pred CCeEEECCCChH------HCEEEEEEEEECCcceEEEEEEEEec-----------CC------ccceEecCCCEEEEeeC
Confidence 458999999766 999999999998776543 3333321 11 23456679999999998
Q ss_pred c-----CcCCceeEEe
Q psy11568 105 Q-----GSPTPKIEWL 115 (116)
Q Consensus 105 ~-----g~P~p~i~W~ 115 (116)
. +.|.|.++|+
T Consensus 154 ~~~~~~~~p~p~I~Wy 169 (227)
T PHA02826 154 TDGISSTFKDYTLTWY 169 (227)
T ss_pred CCCccccCCCceEEEE
Confidence 6 3468999997
No 21
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.37 E-value=8e-12 Score=65.79 Aligned_cols=54 Identities=26% Similarity=0.486 Sum_probs=40.0
Q ss_pred CcEEEEEccCCeeeecccc-ceEEeeC-C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKD-LRIALSN-G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~-~~~~~~~-~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.|+| +++|..+..... ......+ + .|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 12 ~P~v~W-~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~ 69 (75)
T cd05744 12 PPQIFW-KKNNEMLTYNTDRISLYQDNCGRICLLIQNANKE------DAGWYTVSAVNEAGVVSC 69 (75)
T ss_pred CCeEEE-EECCEECCCCCCcEEEEEcCCCeEEEEECCCCcc------cCEEEEEEEEcCCCcEEE
Confidence 489999 889988864222 1221122 2 5999999766 999999999999998875
No 22
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.37 E-value=8.6e-12 Score=65.39 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=40.4
Q ss_pred CcEEEEEccCCeeeeccccceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.++| +++|.++....+...... ...|.|.++..+ |+|.|+|.|.|..|....
T Consensus 13 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05748 13 TPTVTW-SKDGKPLKLSGRVQIETTASSTSLVIKNAERS------DSGKYTLTLKNPAGEKSA 68 (74)
T ss_pred CCeEEE-EECCEEcCCCCeEEEEECCCeEEEEECCCCcC------cCEEEEEEEECCCccEEE
Confidence 489999 899998853332222222 237999999766 999999999999998764
No 23
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=8.1e-12 Score=66.08 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=40.6
Q ss_pred CcEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| +++|.++...... .....++.|.|.++..+ |+|.|.|.|.|..|...+
T Consensus 12 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 12 RPTYQW-FRDGTPLSDGQGNYSVSSKERTLTLRSAGPD------DSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred CCcEEE-EECCEECCCCCccEEEeCCCCEEEEeeCCcc------cCEEEEEEEEeCCCeEee
Confidence 378999 8999988643221 22223458999999766 999999999999998753
No 24
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.36 E-value=8.1e-12 Score=65.72 Aligned_cols=58 Identities=28% Similarity=0.506 Sum_probs=44.0
Q ss_pred CcEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~ 65 (116)
.|.|+| +++|.++...... .....++.|.|.++..+ |+|.|+|.|.|..|...+ ..|.
T Consensus 15 ~p~i~W-~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 15 QPTITW-RLNGVPIEELPPDPRRRVDGGTLILSNVQPN------DTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCEEEE-EECCEECCCCCCcceEEccCCEEEECCCChh------hCEEEEEEEEccCCeEEEeEEEE
Confidence 378999 8899888643322 34455678999999766 999999999999998775 4443
No 25
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.36 E-value=5e-12 Score=66.35 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=41.7
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| +++|.++..... .....++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 16 ~p~i~W-~k~g~~~~~~~~-~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~ 68 (74)
T cd05745 16 QPVIAW-TKGGSQLSVDRR-HLVLSSGTLRISRVALH------DQGQYECQAVNIVGSQRT 68 (74)
T ss_pred CCEEEE-EECCEECCCCCC-eEEccCCeEEEeeCCHH------hCEEEEEEEEeCCCceeE
Confidence 489999 889988763221 23345678999999766 999999999999998775
No 26
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.36 E-value=1.1e-11 Score=68.50 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=46.2
Q ss_pred CcEEEEEccCCeeeeccccceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA 68 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~ 68 (116)
+|.+.| +++|.++....+.+... ....|.|.++.++ |+|.|+|.+.|..|...+ ..|.|..
T Consensus 29 ~p~v~W-~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~------D~G~Ytc~a~N~~G~~~~~~~l~V~~ 92 (98)
T cd05762 29 PITCTW-MKFRKQIQEGEGIKIENTENSSKLTITEGQQE------HCGCYTLEVENKLGSRQAQVNLTVVD 92 (98)
T ss_pred CCceEE-EECCEEecCCCcEEEEecCCeeEEEECCCChh------hCEEEEEEEEcCCCceeEEEEEEEec
Confidence 488999 99999986433333332 2347999999766 999999999999999885 6666654
No 27
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.36 E-value=9.5e-12 Score=64.80 Aligned_cols=53 Identities=13% Similarity=0.307 Sum_probs=40.7
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.++| +++|.++..... .....++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 13 ~p~v~W-~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~~~ 65 (71)
T cd05723 13 TPTVKW-VKNGDMVIPSDY-FKIVKEHNLQVLGLVKS------DEGFYQCIAENDVGNVQA 65 (71)
T ss_pred CCEEEE-EECCeECCCCCC-EEEEecCCEEEEcCCcc------cCEEEEEEEEcCCCEEEE
Confidence 489999 888887753222 22345667889999665 999999999999998875
No 28
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=6.1e-12 Score=65.54 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=42.6
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v 66 (116)
+|.|.| ++++..+... .......++.|.|.++..+ |+|.|+|.|.|..|...+ ..|.|
T Consensus 12 ~P~v~W-~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 12 TPEVHW-DRIDGPLSPN-RTKKLNNNKTLQLDNVLES------DDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CCeEEE-EECCcCCCCC-ceeEEcCCCEEEEcccCHH------hCEEEEEEEEcCCCeEEEEEEEEE
Confidence 489999 7887766431 2223445679999999766 999999999999998764 44443
No 29
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.35 E-value=5.5e-12 Score=66.92 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=40.4
Q ss_pred CcEEEEEccCCeeeeccccceE---E----eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRI---A----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~---~----~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| ++||+++........ . ...+.|.|.++..+ |+|.|+|.|+|..|....
T Consensus 12 ~Pti~W-~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~YtC~A~N~~G~~~~ 72 (79)
T cd05855 12 KPTLQW-FHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHL------NNGIYTLVAKNEYGEDEK 72 (79)
T ss_pred CCceEE-EECCEECCCCcceeeeeEeecccceEEEEEECCCCcc------cCEEEEEEEEcCCcccce
Confidence 489999 999999964322111 1 12247999999766 999999999999997764
No 30
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.35 E-value=1.7e-11 Score=64.87 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=43.8
Q ss_pred CcEEEEEccCCeeeeccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v 66 (116)
.|.|+| +++|+++....+.++ ...++.|.|.++.... ...|+|.|.|.|.|..|.+.+..++|
T Consensus 12 ~P~v~W-~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 12 VPTFQW-TRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGR--PEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CCEEEE-EECCEEccCcCCCcEEEeCCCceEEEeccCCCC--CCCCCEEEEEEEEeccceEEEEEEEE
Confidence 489999 899987643223333 3356789998874210 12379999999999999888765543
No 31
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.34 E-value=6.6e-12 Score=69.71 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=42.6
Q ss_pred CcEEEEEccCCeeeeccccceEEee-------CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALS-------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~-------~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v 66 (116)
+|.++| +|||+++........... ...|.|.++..+ |+|.|+|.|.|..|.... ..|.|
T Consensus 33 ~p~v~W-~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Ytc~A~N~~G~~~~t~~L~V 99 (101)
T cd04975 33 PPHINW-TYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKES------EAGTYTFLASNSDASKSLTFELYV 99 (101)
T ss_pred CCccEE-EeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHh------hCeeEEEEEECCCccEEEEEEEEE
Confidence 478999 999999874222111211 247999999766 999999999999997763 44444
No 32
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.34 E-value=8.2e-12 Score=66.06 Aligned_cols=62 Identities=27% Similarity=0.408 Sum_probs=43.3
Q ss_pred CcEEEEEccCCeeeeccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~ 65 (116)
+|+|+| ++||.++......++ ...++.|.|.++.... ...|+|.|.|.|.|..|...+..++
T Consensus 12 ~P~v~W-~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05733 12 PPTFSW-TRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGR--AEDYEGEYQCYASNELGTAISNEIH 75 (77)
T ss_pred CCeEEE-EECCeECCCCCCCCEEEeCCCCEEEEeccCCCC--CcCCCEEEEEEEEcCCCcEEccccE
Confidence 489999 899998753222233 3346789998875310 1248999999999999988775443
No 33
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.34 E-value=1.7e-11 Score=67.11 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=43.5
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~ 64 (116)
+|.|+| ++++.++... ..++...++.|.|.++.+ ..|+|.|.|.|.|..|...+..+
T Consensus 33 ~P~i~W-~k~~~~i~~~-~~~~~~~~g~L~I~~~~~-----~~D~G~Y~C~A~N~~G~~~s~~a 89 (93)
T cd05849 33 FPIYKW-RKNNLDIDLT-NDRYSMVGGNLVINNPDK-----YKDAGRYVCIVSNIYGKVRSREA 89 (93)
T ss_pred CCEEEE-EECCEEccCC-CCeEEEECCEEEECcCCc-----CCCCEEEEEEEEeCcceEEEccE
Confidence 489999 8898887532 235566778999988742 23999999999999998887543
No 34
>KOG4221|consensus
Probab=99.33 E-value=1.5e-11 Score=90.03 Aligned_cols=101 Identities=22% Similarity=0.414 Sum_probs=74.9
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQG 79 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~ 79 (116)
|.|.| .+|..++...+ ..+.+.+|.|.|.++.. +|.|.|+|.+++......+ ..|.|..... ... .
T Consensus 170 p~i~w-~kn~~pl~~~~-r~i~lpsG~L~I~~~qp------~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~--~~~--~ 237 (1381)
T KOG4221|consen 170 PTIMW-LKNDQPLPLDS-RVIVLPSGALEISGLQP------SDTGEYRCVVTGGASQRTSNEAELTVLSDPG--ALN--K 237 (1381)
T ss_pred ceeEE-ecccccccCCC-cEEEcCCCcEEeccccc------CCCceEEEEEecCCcCCccceeEEEecCCcc--ccc--c
Confidence 68999 99999876544 45677899999999954 4999999999998765554 3444441100 000 1
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
-.|...| ....+..|+.+.|+|.+.|-|.|.+.|.
T Consensus 238 ~~fl~~p-~~~~v~~g~~v~leCvvs~~p~p~v~Wl 272 (1381)
T KOG4221|consen 238 LVFLDEP-SNAVVVEGDDVVLECVVSGVPKPSVKWL 272 (1381)
T ss_pred eeeecCC-CccccccCCcEEEEEEecCCCCCceEEe
Confidence 2344455 7788889999999999999999999996
No 35
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.33 E-value=1.7e-11 Score=64.30 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=41.9
Q ss_pred CcEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~ 62 (116)
.|.|+| ++++.++......++. ..++.|.|.++..+ |+|.|+|.|.|..|...+.
T Consensus 12 ~p~v~W-~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~------D~G~Y~C~a~N~~G~~~s~ 67 (74)
T cd05738 12 DPEITW-FKDFLPVDTTSNGRIKQLRSGALQIENSEES------DQGKYECVATNSAGTRYSA 67 (74)
T ss_pred CCEEEE-EECCEECccCCCCCEEEcCCcEEEECCCChh------hCEEEEEEEECCCCceEcc
Confidence 478999 8999887632233333 34668999999655 9999999999999987653
No 36
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.33 E-value=1.1e-11 Score=67.19 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=41.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| ++++.++.. ..+....++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 30 ~P~v~W-~k~~~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~ 81 (88)
T cd05851 30 VPVIRW-RKILEPMPA--TAEISMSGAVLKIFNIQPE------DEGTYECEAENIKGKDKH 81 (88)
T ss_pred CCEEEE-EECCcCCCC--CCEEecCCCEEEECcCChh------hCEEEEEEEEcCCCceEE
Confidence 489999 888877653 2344455668999999766 999999999999998774
No 37
>KOG4194|consensus
Probab=99.32 E-value=6.6e-12 Score=87.00 Aligned_cols=73 Identities=27% Similarity=0.499 Sum_probs=61.1
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS 107 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~ 107 (116)
.|.+.+|.-+ |+|.|+|.++|.+|..++..+.+... . .|.|...| .+..+..|++++|.|.+.|.
T Consensus 575 ~L~L~nVt~t------d~grYQCVvtN~FGStysqk~KltV~-------~-~PsFtktP-~dltl~tg~mArl~CaAtG~ 639 (873)
T KOG4194|consen 575 ILHLDNVTFT------DEGRYQCVVTNHFGSTYSQKAKLTVN-------Q-APSFTKTP-EDLTLRTGQMARLECAATGH 639 (873)
T ss_pred eeeeeeeecc------cCceEEEEEecccCcchhheeEEEee-------c-cCccccCc-ccceeecccceeeeeeccCC
Confidence 4888999766 99999999999999998744333321 1 28888887 78889999999999999999
Q ss_pred CCceeEEe
Q psy11568 108 PTPKIEWL 115 (116)
Q Consensus 108 P~p~i~W~ 115 (116)
|.|+|.|.
T Consensus 640 P~PeIawq 647 (873)
T KOG4194|consen 640 PRPEIAWQ 647 (873)
T ss_pred CCcceeeh
Confidence 99999995
No 38
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.32 E-value=1.4e-11 Score=64.51 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=41.2
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.++| ++++..+....+. ....++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 15 ~p~v~W-~k~~~~~~~~~~~-~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~ 67 (73)
T cd04969 15 KPTISW-SKGTELLTNSSRI-CIWPDGSLEILNVTKS------DEGKYTCFAENFFGKANS 67 (73)
T ss_pred CCEEEE-EECCEEcccCCCE-EECCCCeEEEccCChh------HCEEEEEEEECCCCceEE
Confidence 479999 8888887543222 2334568999999766 999999999999998774
No 39
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.32 E-value=1.6e-11 Score=67.04 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=41.1
Q ss_pred CcEEEEEccCCeeeeccccceEEee-C--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALS-N--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~-~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.+.| +++|.++....+.+.... + ..|.|.++..+ |+|.|+|.|.|..|....
T Consensus 30 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 30 DPEVSW-LKNDQALALSDHYNVKVEQGKYASLTIKGVSSE------DSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCeEEE-EECCEECccCCCEEEEEcCCCEEEEEEccCChh------hCEEEEEEEEECCCcceE
Confidence 388999 899998865433333333 2 26999999766 999999999999998764
No 40
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.32 E-value=2.2e-11 Score=66.43 Aligned_cols=56 Identities=21% Similarity=0.425 Sum_probs=42.0
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~ 64 (116)
.|.|+| +++|.++.. .+......++.|.|.++.++ |+|.|.|.|.|..|...+..+
T Consensus 31 ~p~i~W-~kng~~l~~-~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 31 ATYIWW-VNNGSLLVP-PRLQLSNDNRTLTFNNVTRS------DTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred CCEEEE-EECCEECCC-CCEEEeCCCCEEEECcCChh------hCEEEEEEEEcCCCCEEeeeE
Confidence 488999 899988753 12222223458999999766 999999999999998876443
No 41
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.31 E-value=4.1e-11 Score=79.17 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=61.8
Q ss_pred cEEEEEccCCeeeeccccceEEeeCC-eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQG 79 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~-~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~ 79 (116)
|.|+| +|+|.... ......++ .|.|.++..+ |+|.|+|.+.|..|... +..|.|.... .
T Consensus 61 ~~i~W-~K~g~~~~----~~~~~~~g~~l~i~~~~~~------DsG~Y~C~a~N~~g~~~~s~~L~V~~~~--------~ 121 (326)
T PHA02785 61 LDILW-EKRGADND----RIIPIDNGSNMLILNPTQS------DSGIYICITKNETYCDMMSLNLTIVSVS--------E 121 (326)
T ss_pred ceEEE-EECCCccc----eEEEccCCceEEEcccCcc------cCeEEEEEEECCCcceEEEEEEEEEecC--------C
Confidence 68999 88774321 12334444 4888888655 99999999999987655 3555554320 0
Q ss_pred CceEecCCCeEEEeCCCcEEEEee-----ecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCA-----AQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~-----~~g~P~p~i~W~ 115 (116)
+.+...+ ....+.+|..+.+.|. ..+.|.|.++|+
T Consensus 122 ~~~~~~~-~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~ 161 (326)
T PHA02785 122 SNIDLIS-YPQIVNERSTGEMVCPNINAFIASNVNADIIWS 161 (326)
T ss_pred Cccceee-ccceecccCcEEEECCChhhcccCCCCceEEEc
Confidence 2221111 2334568999999997 346799999996
No 42
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.30 E-value=2.8e-11 Score=65.07 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=42.0
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~ 62 (116)
.|.+.| +++|..+...........++.|.|.++..+ |+|.|+|.+.|..|...+.
T Consensus 26 ~p~i~W-~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 26 EPTVSW-RKDGQPLNLDNERVRIVDDGNLLIAEARKS------DEGTYKCVATNMVGERESA 80 (86)
T ss_pred CCEEEE-EECCEECCCCCCCEEEccCCEEEEeECCcc------cCEEEEEEEEeccCceeee
Confidence 378999 899988764222222344678999999766 9999999999999987753
No 43
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=2.4e-11 Score=63.83 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=39.6
Q ss_pred CcEEEEEccCCeee-eccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568 1 MYVLLWLIRDNTVI-AYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~-~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~ 65 (116)
.|.|+| +++|... ......++ ...++.|.|.++..+ |+|.|.|.|.|..|...+ ..|.
T Consensus 12 ~P~v~W-~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 12 TPQIAW-QKDGGTDFPAARERRMHVMPEDDVFFIVDVKIE------DTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CCEEEE-EeCCCccCCcccccceEEecCCCEEEEeeCCcc------cCEEEEEEEEcCCCEEEeeEEEE
Confidence 478999 7776532 21112222 223568999999766 999999999999998764 4343
No 44
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.30 E-value=2.4e-11 Score=62.87 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=39.2
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.+.| ++++..+.. .......++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 12 ~p~v~W-~k~~~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~ 63 (69)
T cd05725 12 VPTVLW-RKEDGELPK--GRAEILDDKSLKIRNVTAG------DEGSYTCEAENMVGKIEA 63 (69)
T ss_pred CCEEEE-EECCccCCC--CcEEEeeCCEEEECcCChh------HCEEEEEEEEcCCCcEEE
Confidence 478999 777766542 1122335668999999766 999999999999998764
No 45
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.30 E-value=2.5e-11 Score=62.85 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=40.9
Q ss_pred CcEEEEEccCCeeeeccccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| +++|.++... .++ ...++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 12 ~p~i~W-~k~g~~~~~~--~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~ 64 (69)
T cd05746 12 EPTITW-NKDGVQVTES--GKFHISPEGYLAIRDVGVA------DQGRYECVARNTIGYASV 64 (69)
T ss_pred CCEEEE-EECCEECCCC--CCEEECCCCEEEECcCChh------hCEEEEEEEECCCCcEEE
Confidence 489999 8899887632 233 334678999999766 999999999999998764
No 46
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.28 E-value=2.9e-11 Score=65.07 Aligned_cols=52 Identities=25% Similarity=0.503 Sum_probs=42.6
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.++| +++|.++.. ..++...++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 28 ~p~v~W-~k~g~~~~~--~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 28 RPAYRW-LKNGQPLAS--ENRIEVEAGDLRITKLSLS------DSGMYQCVAENKHGTIYA 79 (85)
T ss_pred CCEEEE-EECCEECCC--CCeEEEeCCEEEEeeCCHH------HCEEEEEEEECCCCeEEE
Confidence 488999 899998763 2345566789999999766 999999999999998764
No 47
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.28 E-value=2.5e-11 Score=64.49 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=40.3
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
|.|.| ++||.++.. +.+....++.|.|.++..+ |+|.|+|.|.|..|...
T Consensus 23 ~~v~W-~k~g~~l~~--~~~~~~~~~~L~I~~~~~~------DsG~Y~C~a~n~~g~~~ 72 (79)
T cd04973 23 QSINW-TKDGVQLGE--NNRTRITGEEVQIKDAVPR------DSGLYACVTSSPSGSDT 72 (79)
T ss_pred ceEEE-eeCCcCCCC--CceEEEeCCEEEECCCChh------hCEEEEEEEeCCCCccc
Confidence 67999 899998864 2344555678999999766 99999999999988755
No 48
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.28 E-value=2.5e-11 Score=67.41 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=42.3
Q ss_pred CcEEEEEccCCeeeeccccceEE--------eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA--------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~--------~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v 66 (116)
+|.+.| ++||+++......... .....|.|.++..+ |+|.|+|.|.|..|.... ..|.|
T Consensus 32 ~P~v~W-~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------D~G~Ytc~A~N~~g~~~~t~~l~V 99 (101)
T cd05859 32 PPQIRW-LKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEE------DSGLYTALAQNEDAVKSYTFALQI 99 (101)
T ss_pred CCceEE-EECCEECcCCcceEEeccccccceeeccEEEEeeCCHH------HCEEEEEEEEcCCceEEEEEEEEE
Confidence 488999 9999998742221111 11247999999766 999999999999988763 54444
No 49
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.27 E-value=6.6e-11 Score=63.87 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=40.8
Q ss_pred CcEEEEEccCCeeeeccc-cceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVK-DLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~-~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.|+| +++|+++.... +...... .+.|.|.++.++ |+|.|+|.|.|..|....
T Consensus 24 ~P~v~W-~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~N~~G~~~~ 80 (86)
T cd05894 24 APTVTW-SRGDKAFTETEGRVRVESYKDLSSFVIEGAERE------DEGVYTITVTNPVGEDHA 80 (86)
T ss_pred CCeEEE-EECCEECccCCCeEEEEEcCCeEEEEECCCccC------cCEEEEEEEEeCCCcEEE
Confidence 489999 99999886432 2222222 237999999766 999999999999998764
No 50
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.27 E-value=6.1e-11 Score=65.04 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=43.1
Q ss_pred CcEEEEEccCCeeeeccccceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK 67 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~ 67 (116)
.|.|+| +++|..+... ..++.. .++.|.|.++..+ |+|.|+|.|.|..|.... ..|.|.
T Consensus 32 ~p~v~W-~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 32 EPTMTW-TKDGEPIESG-EEKYSFNEDGSEMTILDVDKL------DEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CCEEEE-EECCEECcCC-CCEEEEeCCCCEEEECCCChh------hCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 488999 8999887643 122322 2347999999766 999999999999998764 555543
No 51
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.27 E-value=3.9e-11 Score=65.35 Aligned_cols=56 Identities=30% Similarity=0.436 Sum_probs=43.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~ 62 (116)
+|.++| +++|.++......+....++.|.|.++.. ..|+|.|+|.|.|..|.+.+.
T Consensus 33 ~p~i~W-~k~~~~l~~~~~~~~~~~~~~L~i~~~~~-----~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 33 PPTYRW-LMNGTEIDDEPDSRYSLVGGNLVISNPSK-----AKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCEEEE-EECCEECCCCCCCCEEEECCEEEEecCCc-----cCCCEEEEEEEEcCCCEEEec
Confidence 479999 89999885433445566678899988753 139999999999999987764
No 52
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.26 E-value=8.2e-11 Score=63.77 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=43.1
Q ss_pred CcEEEEEccCCeeeeccccceEEee-----C---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALS-----N---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA 68 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~-----~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~ 68 (116)
+|.++| ++++..+.... .++... . ..|.|.++..+ |+|.|+|.|.|..|...+ ..|.|..
T Consensus 15 ~~~i~W-~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~------D~G~YtC~A~N~~G~~~~~~~L~V~~ 83 (88)
T cd05735 15 PIIVRW-EKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVRE------DSGFFSCHAINSYGEDRGIIQLTVQE 83 (88)
T ss_pred CCEEEE-eeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcc------cCEEEEEEEEcCCCcceEEEEEEEeC
Confidence 378999 99998875322 122211 1 36999999666 999999999999998875 5566654
No 53
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.25 E-value=5.8e-11 Score=61.93 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
+|.++| +++|.++... ..++...+.+|.|.++..+ |+|.|+|.|.|...
T Consensus 12 ~P~v~W-~kdg~~l~~~-~~~~~~~~~~L~I~~v~~~------D~G~YtC~a~~~~~ 60 (72)
T cd07702 12 APEVIW-LKDGLPAAEK-CSRYHVDGYSLVIKDVTEE------DAGIYTILLGIKQY 60 (72)
T ss_pred CCeEEE-EECCEECCCC-CcEEEeCCCEEEECcCCHH------HCEEEEEEEEcccc
Confidence 489999 9999987642 2344555668999999766 99999999999843
No 54
>KOG4222|consensus
Probab=99.25 E-value=2e-11 Score=88.94 Aligned_cols=96 Identities=23% Similarity=0.385 Sum_probs=78.0
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCC
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQG 79 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~ 79 (116)
+|.|.| .+++..+.. .+..+.....+|.|.++... |+|.|.|.+.|..|... +..++|.++
T Consensus 254 ~P~Vrw-kk~~~~~P~-~ry~i~~d~qtl~i~r~tp~------deg~y~C~a~n~vG~l~asa~ltV~ap---------- 315 (1281)
T KOG4222|consen 254 QPTVRW-KKDDPSLPR-SRYSILDDTQTLRIDRVTPT------DEGTYVCPAENLVGGLEASATLTVQAP---------- 315 (1281)
T ss_pred CCceee-eccCCCCCc-cceeeeeccccccccccCCC------cccceeeeccccccccccccceEEecC----------
Confidence 488999 777665542 23344555578999999665 99999999999998877 477888876
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.|..++ .+..+..|..+.|.|.+.|+|.|.+.|.
T Consensus 316 P~f~kkp-~dq~v~lg~~vt~pc~~~gnP~PavfW~ 350 (1281)
T KOG4222|consen 316 PSFGKKP-RDQKVALGGTVTFPCETLGNPPPAVFWL 350 (1281)
T ss_pred ccccccc-CccccccCceEEeeeecCCCCCcceEEe
Confidence 8888887 7777788999999999999999999996
No 55
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.24 E-value=6.5e-11 Score=63.55 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=39.8
Q ss_pred CcEEEEEccCCeeeeccccc---eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.|+| +++|+++...... +.......|.|.++..+ |+|.|+|.+.|..|...+
T Consensus 23 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~------D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 23 TPTMRW-LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSINH 79 (85)
T ss_pred CCEEEE-EECCEECCCCCceeeeEEeCCceEEEEccCCcc------cCEEEEEEEEeCCCEEEE
Confidence 378999 8999988642221 11223347889999655 999999999999998774
No 56
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.24 E-value=8.2e-11 Score=62.32 Aligned_cols=54 Identities=19% Similarity=0.371 Sum_probs=40.1
Q ss_pred CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| ++++.++....+......+ +.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 15 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 15 TPIINW-RLNWGHVPDSARVSITSEGGYGTLTIRDVKES------DQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CCEEEE-EECCeECCCCCCEEEEECCCEEEEEECCCChH------HCEEEEEEEEecCCEEEe
Confidence 489999 8888777543222222222 37999999766 999999999999998875
No 57
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.24 E-value=5.7e-11 Score=61.62 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=40.6
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~ 65 (116)
.|.++| ++++.++... .......++.|.|.++..+ |+|.|+|.|.|..|.... ..|.
T Consensus 12 ~p~v~W-~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05731 12 TPEISW-IKIGGELPAD-RTKFENFNKTLKIDNVSEE------DDGEYRCTASNSLGSARHTISVT 69 (71)
T ss_pred CCeEEE-EECCeECCCC-ceeEecCCCEEEECCCCHH------HCEEEEEEEEeCCceEEEEEEEE
Confidence 489999 7777766421 1122233458999999766 999999999999997664 4443
No 58
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.23 E-value=8.3e-11 Score=63.35 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=42.6
Q ss_pred EEEEEccCCeeeeccc-cceE---E--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568 3 VLLWLIRDNTVIAYVK-DLRI---A--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA 68 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~-~~~~---~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~ 68 (116)
.++| ++||.++.... ..++ . ...+.|.|.++... |+|.|+|.|.|..|...+ ..|.|..
T Consensus 18 ~v~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~YtC~A~n~~g~~~~~~~L~V~~ 83 (85)
T cd05854 18 TFTW-SLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLS------HAGTYTCTAQTVVDSASASATLVVRG 83 (85)
T ss_pred EEEE-EECCeEccccCCCCcEEEEEecceEeEEEEccCChh------hCeEEEEEEecCCCCEEEEEEEEEEC
Confidence 6899 88998885421 1111 1 13458999999766 999999999999998875 5565553
No 59
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.23 E-value=1.9e-10 Score=67.29 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=52.1
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g 106 (116)
.|.|.++..+ |+|.|.|.+.+..|.... ..|.|..+ |.+...+ .......|+.+.|.|.+.|
T Consensus 2 sL~i~~v~~~------D~G~Y~C~~~~~~~~~~~~~~l~v~~~----------P~v~~~~-~~~~~~~~~~~~L~C~a~g 64 (139)
T cd05771 2 SLTLPGLTVH------DEGTYICSVSTPPHQAQQIIQLSVSEP----------PRVRLSL-EKLVSMIEEPQTLICHIAG 64 (139)
T ss_pred eEEECCCCHH------HCEEEEEEEEccCcceeeEEEEEEecC----------CceEEeC-CCceeecCCcEEEEEEECC
Confidence 5789999766 999999999988776553 55666554 6665554 3334446899999999999
Q ss_pred c-CC-ceeEEe
Q psy11568 107 S-PT-PKIEWL 115 (116)
Q Consensus 107 ~-P~-p~i~W~ 115 (116)
. |. +.++|+
T Consensus 65 ~~P~~~~i~W~ 75 (139)
T cd05771 65 YYPLDVQVEWT 75 (139)
T ss_pred CCCCCeEEEEE
Confidence 6 54 488996
No 60
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.23 E-value=1.7e-10 Score=62.96 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=39.5
Q ss_pred cEEEEEccCCeeeeccccceEEeeCC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~ 64 (116)
+.++|++.+|.++....+... ..++ .|.|.++..+ |+|.|+|.|.|..|.....++
T Consensus 29 ~~v~W~k~~g~~~~~~~r~~~-~~~g~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 29 ESIDWYNPQGEKIVSSQRVVV-QKEGVRSRLTIYNANIE------DAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred CeEEEEeCCCeEecCCCCEEE-EeCCCeeEEEEecCChH------HCEEEEEEEEcCCCcEEEEEE
Confidence 368995457877754322222 2233 7999999766 999999999999998765443
No 61
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.22 E-value=1.5e-10 Score=63.69 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=36.3
Q ss_pred cEEEEEccCCeeeeccccceEE--ee---CCeEEecCCCCCCCCCCCCceEEEEEEEcCC-CceE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIA--LS---NGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVIL 60 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~--~~---~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~ 60 (116)
|.|+|++.||..+..... ++. .. .++|.|.++..+ |+|.|+|.|.|.. |...
T Consensus 31 p~i~W~~~~g~~l~~~~~-r~~v~~~~~~~~~L~I~~v~~~------D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 31 KDISWFSPNGEKLTPNQQ-RISVVRNDDYSSTLTIYNANID------DAGIYKCVVSNEDEGESE 88 (96)
T ss_pred CEEEEECCCCcCccccCC-eEEEEeCCCCceEEEEeccChh------hCEEEEEEEEcCCCCcEE
Confidence 699994448877653221 222 12 147999999766 9999999999997 5555
No 62
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.22 E-value=1e-10 Score=62.87 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=42.3
Q ss_pred EEEEEccCCeeeecccc-c---eE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568 3 VLLWLIRDNTVIAYVKD-L---RI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA 68 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~-~---~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~ 68 (116)
.++| +++|.++..... . +. ...++.|.|.++... |+|.|+|.|.|..|...+ ..|.|..
T Consensus 18 ~~~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~ 83 (85)
T cd04970 18 TFTW-SFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLK------HAGKYTCTAQTVVDSLSASADLIVRG 83 (85)
T ss_pred EEEE-EECCeEeeccCCCccEEEEecccccceEEEccCCHH------hCeeeEEEEecCCCcEEEEEEEEEEC
Confidence 5689 889998864211 1 11 124568999999766 999999999999988764 5555554
No 63
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.21 E-value=2.3e-10 Score=60.18 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=42.7
Q ss_pred CcEEEEEccCCeeeeccccceEE-eeC-CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA-LSN-GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV 66 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~-~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v 66 (116)
+|.+.| +++++.+......+.. ..+ ..|.|.++..+ |+|.|+|.+.|..|.... ..|.|
T Consensus 12 ~p~v~W-~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 12 LPRLTW-LKNGMDITPKLSKQLTLIANGSELHISNVRYE------DTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CCEEEE-EECCEECCCCCCccEEEeCCCCEEEECcCCcc------cCEEEEEEEEcCCCCcceEEEEEE
Confidence 478999 8999887643222322 233 36999999665 999999999999998774 44544
No 64
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.20 E-value=1.7e-10 Score=62.42 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=39.5
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.++| ++++..+.. .......++.|.|.++..+ |+|.|.|.|.|..|...+
T Consensus 30 ~p~v~W-~k~~~~~~~--~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~ 81 (88)
T cd04968 30 VPQIKW-RKVDGSMPS--SAEISMSGAVLKIPNIQFE------DEGTYECEAENIKGKDTH 81 (88)
T ss_pred CCEEEE-EECCCcCCC--ccEEEEeCCEEEECCCCcc------cCEEEEEEEEECCCcEEE
Confidence 378999 777665542 2223356679999999766 999999999999998764
No 65
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.19 E-value=1.9e-10 Score=60.17 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=39.8
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.+.|++.++..+.... ......++.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 15 ~p~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05764 15 EPAIHWISPDGKLISNSS-RTLVYDNGTLDILITTVK------DTGSFTCIASNAAGEATA 68 (74)
T ss_pred CCEEEEEeCCCEEecCCC-eEEEecCCEEEEEECChh------hCEEEEEEEECCCCeEEE
Confidence 479999545777665322 123345678999999665 999999999999997664
No 66
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.18 E-value=2e-10 Score=59.50 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=37.6
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| +++|+++... .+.......|.|.++. |+|.|+|.|.|..|...+
T Consensus 15 ~P~v~W-~k~g~~l~~~--~~~~~~~~~L~i~~~~--------d~G~Y~C~A~N~~G~~~~ 64 (69)
T cd05739 15 MPYVKW-MKGGEELTKE--DEMPVGRNVLELTNIY--------ESANYTCVAISSLGMIEA 64 (69)
T ss_pred CCEEEE-EECCEECCCc--cceecCccEEEEeccc--------cCeeEEEEEEeCCCEEEE
Confidence 489999 8888887532 2233344578888873 899999999999998764
No 67
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.17 E-value=3.8e-10 Score=61.05 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=44.2
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~ 65 (116)
.|.+.| +++|..+....+.......+ .|.|.++..+ |+|.|+|.+.|..|.... ..|.
T Consensus 29 ~~~v~W-~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 29 PPTVTW-YKNGRPLTSSQRYQIESDGGSSSLTIKNVTRE------DAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp SSEEEE-EETTEEEESSSSEEEEEETTEEEEEESSESGG------GSEEEEEEEEETTEEEEEEEEEE
T ss_pred CCcccc-cccccceeeeeeeeeecccceeEEccCCCChh------hCEEEEEEEEECCCEEEEEEEEE
Confidence 378999 88999998644544444433 7999999766 999999999999887764 4443
No 68
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.17 E-value=2.9e-10 Score=61.81 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=43.0
Q ss_pred CcEEEEEccCCeeeec------cccceEEe-eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568 1 MYVLLWLIRDNTVIAY------VKDLRIAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA 68 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~------~~~~~~~~-~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~ 68 (116)
.|.|.| +++|..+.. ....++.. .++.|.|.++..+ |+|.|.|.|.|..|...+ ..|.|..
T Consensus 15 ~p~v~W-~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 15 QPAIFW-QKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRS------DVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred CCEEEE-EeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChh------hCEEEEEEEEcCCCceEEEEEEEEee
Confidence 378999 667654311 11234433 3568999999766 999999999999998875 5566653
No 69
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.17 E-value=4e-10 Score=61.51 Aligned_cols=55 Identities=11% Similarity=0.270 Sum_probs=37.5
Q ss_pred CcEEEEEccCCeeeeccccceEEeeC---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+|.++|++.+|..+....+......+ ..|.|.++..+ |+|.|+|.|.|..|....
T Consensus 28 p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 28 PKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIE------DAGIYKCVATDAKGTESE 85 (92)
T ss_pred CCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcc------cCEEEEEEEEcCCCCcce
Confidence 46899954577766542222222222 27999999766 999999999999765443
No 70
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.16 E-value=9.8e-11 Score=62.30 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=38.6
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.++| +++|..+..............|.|.++..+ |+|.|+|.+.|..|....
T Consensus 23 ~p~i~W-~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~ 76 (82)
T cd05856 23 RPDITW-LKDNKPLTPTEIGESRKKKWTLSLKNLKPE------DSGKYTCHVSNRAGEINA 76 (82)
T ss_pred CCcEEE-EECCcCCcCCccceecCceEEEEEccCChh------hCEEEEEEEEcCCccEEE
Confidence 378999 888887753221111122347999999766 999999999999997663
No 71
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.16 E-value=3.9e-10 Score=61.83 Aligned_cols=63 Identities=29% Similarity=0.478 Sum_probs=43.0
Q ss_pred CcEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceEEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVILSRFVH 65 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~~~~~~ 65 (116)
.|.++| ++||..+...... .....++.+.|.++..... .+.|+|.|.|.|.|. .|...+..+.
T Consensus 28 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~-~~~D~G~Y~C~a~N~~~G~~~s~~~~ 92 (95)
T cd05722 28 PPKIEW-KKDGVLLNLVSDERRQQLPNGSLLITSVVHSKH-NKPDEGFYQCVAQNDSLGSIVSRTAR 92 (95)
T ss_pred CCEEEE-EECCeECccccCcceEEccCCeEEEeeeeccCC-CCCcCEEEEEEEECCccCcEEEeeeE
Confidence 489999 8999988643322 2344566787777632100 134999999999999 9988765433
No 72
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.16 E-value=3.3e-10 Score=61.86 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=39.4
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.+.| +++|..+....+.......+ .|.|.++..+ |+|.|+|.|.|.+|....
T Consensus 30 ~p~i~W-~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 30 DPEVIW-FKNDQDIELSEHYSVKLEQGKYASLTIKGVTSE------DSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCeEEE-EECCEECCCCCCEEEEEcCCCEEEEEECCCChh------hCEEEEEEEEeCCCceee
Confidence 478999 78888775433322222222 6899999655 999999999999998774
No 73
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.15 E-value=4.2e-10 Score=61.43 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=39.8
Q ss_pred CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
.|.|.| ++||+++.... +....++.|.|.++..+ |+|.|+|.+.|..+...
T Consensus 29 ~p~i~W-yk~~~~i~~~~--~~~~~~~~L~I~~v~~~------DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 29 LPPVQW-YKDCKLLEGDR--KRFVKGSKLLIQNVTEE------DAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred CCcEEE-eECCEECCCCc--cEEecCCEEEEeeCChh------hCEEEEEEEEecCCCEE
Confidence 378999 99999886422 22236679999999766 99999999999976654
No 74
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.14 E-value=6.8e-10 Score=58.88 Aligned_cols=57 Identities=30% Similarity=0.355 Sum_probs=38.1
Q ss_pred CcEEEEEccCCeeeecc-----ccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYV-----KDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~-----~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~ 63 (116)
.|.|+|++.++...... ...+. ...++.|.|.++..+ |+|.|.|.|.|..|...+..
T Consensus 12 ~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~s~~ 74 (79)
T cd05734 12 PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEE------DSGYYLCKVSNDVGADASKS 74 (79)
T ss_pred CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcc------cCEEEEEEEEeCCCCCCceE
Confidence 48999944344322110 11222 245678999999765 99999999999999876543
No 75
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.14 E-value=2.8e-10 Score=62.43 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=39.9
Q ss_pred cEEEEEccCCeeeec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 YVLLWLIRDNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p~v~W~~~~g~~~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
|.|+| +++|..+.. ..+.+....++.|.|.++..+ |+|.|+|.+.|..|...+
T Consensus 34 ~~v~W-yk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~~~N~~g~~~~ 88 (94)
T cd05756 34 LNLTW-YKSDGKTPIPTEERSRMHQQKDLLWFLPAALE------DSGLYTCVVRNSTYCMKV 88 (94)
T ss_pred ceEEE-EEcCCCCcccccccceeeecCCeEEEccCCcc------cCeEEEEEEcCCCccEEE
Confidence 68999 788766432 123344445678999999766 999999999999988764
No 76
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.13 E-value=6.8e-10 Score=60.31 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=39.3
Q ss_pred CcEEEEEccCCeeeeccccceEE--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| +++|..+......... .....|.|.++..+ |.|.|.|.|.|..|...+
T Consensus 29 ~p~v~W-~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 29 LPKVEW-IIAGLIVIQTRTDTLETTVDIYNLQLSNITSE------TQTTVTCTAENPVGQANV 84 (90)
T ss_pred CCeEEE-EECCEEccCCccEEEEecCCEEEEEEecCCcc------cCEEEEEEEECCCCceeE
Confidence 489999 8898877532211111 12237999999766 999999999999998774
No 77
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.12 E-value=7.7e-10 Score=60.33 Aligned_cols=54 Identities=13% Similarity=0.259 Sum_probs=39.6
Q ss_pred CcEEEEEccCCeeeeccccceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.+.| +++|..+....+...... .+.|.|.++..+ |+|.|.|.|.|..|....
T Consensus 32 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~ 87 (92)
T cd05747 32 APTVTW-MREGQIIVSSQRHQITSTEYKSTFEISKVQMS------DEGNYTVVVENSEGKQEA 87 (92)
T ss_pred CCEEEE-EECCEECCCCCcEEEEEcCCeeEEEECCCCcc------cCEeEEEEEEcCCCCEeE
Confidence 378999 888888754322222222 247999999665 999999999999998764
No 78
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.11 E-value=6e-10 Score=58.33 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=39.4
Q ss_pred CcEEEEEccCCeeeeccccce---EEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLR---IAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~---~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.+.| +++|+++....... ... ....|.|.++..+ |+|.|+|.|.|..|....
T Consensus 13 ~p~~~W-~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 13 SLRFKW-FKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLA------DSGEYTCVVENILGNDTV 71 (75)
T ss_pred CceEEE-EcCCeeccccCCcceEEEEecCceEEEEEccCCcc------cCeEEEEEEEEcCCceeE
Confidence 378999 88999886432221 111 1347999999766 999999999999987653
No 79
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.07 E-value=1.4e-09 Score=59.93 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=38.4
Q ss_pred CcEEEEEccCCeeeeccc---cceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVK---DLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~---~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| ++++..+.... ..++... .+.|.|.++..+ |+|.|+|.|.|..|....
T Consensus 31 ~P~v~W-~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 31 IPSITW-RTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYT------DAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred CCEEEE-EECCccccCCccccCccEEEEcCccEEEEEEecCccC------cCEEEEEEEecCCCCeeE
Confidence 489999 77887764311 1122221 137999999766 999999999999998764
No 80
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.07 E-value=8.8e-10 Score=59.91 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=27.0
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH 65 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~ 65 (116)
+.|.|.++..+ |+|.|+|.|.|..|...+ ..|.
T Consensus 55 ~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~sa~L~ 88 (90)
T cd04974 55 EVLYLRNVSFD------DAGEYTCLAGNSIGPSHHSAWLT 88 (90)
T ss_pred ceEEEeccccc------cCcEEEEEeecccCcccCCEEEE
Confidence 47999999766 999999999999998764 4443
No 81
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.06 E-value=8.5e-10 Score=58.85 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=37.7
Q ss_pred c-EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568 2 Y-VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64 (116)
Q Consensus 2 p-~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~ 64 (116)
| .|+| ++||.++.. +.....+.|.|..+. |+|.|.|.|.|..|...+...
T Consensus 28 P~~I~W-~k~g~~l~~----~~~~~~s~L~i~~~~--------d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 28 PVEILW-WQGGSPLGD----PPAPSPSVLNVPGLN--------ETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred CeEEEE-EECCEECCC----CCCCCCCEEEEcccc--------CCeEEEEEEEeccCcEEeeeE
Confidence 7 6999 999998753 111234578888773 889999999999998876443
No 82
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.06 E-value=1.5e-09 Score=59.63 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=36.1
Q ss_pred CcEEEEEccCCeeeecc----ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYV----KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~----~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| +++|+.+... ...+....++.+.+..+.... ....|+|.|+|.|.|..|...+
T Consensus 30 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~D~G~Y~C~a~N~~G~~~s 92 (100)
T cd07693 30 TPTIQW-LKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGR-KGRSDEGVYVCVAHNSLGEAVS 92 (100)
T ss_pred CCEEEE-EECCEECccccCCCCcceEEecCCcEEEEEeeccC-CCcCcCEEEEEEEEccccceec
Confidence 378999 8999988641 112233445544332221000 0134999999999999998665
No 83
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.05 E-value=6.7e-10 Score=59.96 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=38.9
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
|+|+| ++||.++.... .++...++.|.|.++..+ |+|.|+|.+.+..
T Consensus 25 ~~i~W-~~ng~~i~~~~-~r~~~~~~~L~I~nv~~~------DsG~Y~C~a~e~~ 71 (87)
T cd05873 25 ARVVW-KFDGKVLTPES-AKYLLYRDGLLIFNASEA------DAGRYQCLSVEKS 71 (87)
T ss_pred CeEEE-EECCEECCCCC-ceEEEECCcEEEeCCCHH------HCEEEEEEEEecc
Confidence 68999 99999986432 356677889999999766 9999999999874
No 84
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.05 E-value=2.5e-09 Score=60.18 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=41.3
Q ss_pred CcEEEEEccCCeeeeccccceEE---ee-----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIA---LS-----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK 67 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~---~~-----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~ 67 (116)
.|.++| ++||..+.... .++. .. .+.|.|.++.. ..|.|.|+|.|.|..|.... ..|.+.
T Consensus 37 ~p~i~W-~k~g~~l~~~~-~r~~~~~~~~~~~~~s~L~I~~v~~-----~~D~G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 37 RVQFRW-AKNGVPLDLGN-PRYEETTEHTGTVHTSILTIINVSA-----ALDYALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred CCEEEE-EECCEECCCCC-CeEEEEeeccCccceeEEEECcCCc-----cCCCEEEEEEEEeCCccCcEEEEEEec
Confidence 378999 88999885321 1221 11 24689998863 13999999999999998764 445444
No 85
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.03 E-value=1.6e-09 Score=58.87 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.4
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+.|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 55 ~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~ 83 (90)
T cd05858 55 EVLYLRNVTFE------DAGEYTCLAGNSIGISHH 83 (90)
T ss_pred eEEEEccCCHH------HCEEEEEEEEeCCCcccc
Confidence 36999999766 999999999999998764
No 86
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.00 E-value=1.4e-09 Score=57.19 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=38.1
Q ss_pred cEEEEEccCCeeeecc--ccceEEe----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 YVLLWLIRDNTVIAYV--KDLRIAL----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~--~~~~~~~----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
|.++| +++|+++... .+.++.. ..+.|.|.++..+ |+|.|+|.+.|..|...+
T Consensus 14 ~~~~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~a~N~~g~~~~ 72 (76)
T cd05895 14 LRFKW-FKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLA------DNGEYKCMVSSKLGNDSV 72 (76)
T ss_pred CceEE-EECCcccccCCCCCceEEEEeCCcEEEEEECcCCcc------cCEEEEEEEEeCCCceeE
Confidence 67899 8899888532 1222221 1246999999765 999999999999987653
No 87
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.97 E-value=2.4e-09 Score=58.66 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=37.6
Q ss_pred cEEEEEccCCeeeeccccceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 59 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~ 59 (116)
|.|+| +||++++...+ .+... ..+.|.|.++..+ |+|.|+|.+.+.+|..
T Consensus 30 ~~v~W-YKd~~~l~~~~-~~~~~~~~~~~L~I~~v~~~------D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 30 VELQW-YKDSVLLDKDN-EKFYSLKGSTYLHIIDVSLN------DSGYYTCKLQFTHEGK 81 (95)
T ss_pred CcEEE-ccCCEECcCCC-cceEecCCCCEEEEEEcChh------hCEEEEEEEEEeeCCE
Confidence 68999 99999886422 22222 2357999999766 9999999999997544
No 88
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.97 E-value=5.1e-09 Score=57.36 Aligned_cols=54 Identities=26% Similarity=0.302 Sum_probs=37.7
Q ss_pred CcEEEEEccCCeeeeccc---cceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIRDNTVIAYVK---DLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~---~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+| ++++..+.... ..++... .+.|.|.++..+ |+|.|.|.|.|..|....
T Consensus 30 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~ 90 (96)
T cd05732 30 IPEITW-RRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT------DAGRYDCEASNRIGGDQQ 90 (96)
T ss_pred CCcEEE-EECCcccCCCCccccceEEEeCCccEEEEEECcCCcC------cCEEeEEEEEeCCCCcEE
Confidence 378999 77776654311 1122221 237999999766 999999999999998763
No 89
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.95 E-value=6.2e-09 Score=57.39 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=36.8
Q ss_pred CcEEEEEcc-CCeeeecc---ccceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 1 MYVLLWLIR-DNTVIAYV---KDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 1 ~p~v~W~~~-~g~~~~~~---~~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.|+|++. +|..+... .+.++... ...|.|.++..+ |+|.|+|.|.|..|....
T Consensus 30 ~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~ 92 (98)
T cd05870 30 IPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLS------DSGRYDCEAASRIGGHQK 92 (98)
T ss_pred CCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcC------CCEEEEEEEeccCCccee
Confidence 378999433 45444321 11233222 247999999766 999999999999997764
No 90
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.93 E-value=7.1e-09 Score=54.98 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=26.0
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.+.|.|.++..+ |+|.|.|.|.|..|...+
T Consensus 46 ~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 46 IGQLVIYNAQPQ------DAGLYTCTARNSGGLLRA 75 (81)
T ss_pred ccEEEEccCCcc------cCEEEEEEEecCCceEEE
Confidence 458999999766 999999999999998764
No 91
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.91 E-value=8.7e-09 Score=56.82 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=38.4
Q ss_pred c-EEEEEccCCeeeeccccceEEee-C-------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 Y-VLLWLIRDNTVIAYVKDLRIALS-N-------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p-~v~W~~~~g~~~~~~~~~~~~~~-~-------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
| .|.| ++++..+......++... . +.|.|.++..+ .|.|.|.|.|.|..|...+
T Consensus 31 P~~v~W-~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~-----d~~G~Y~C~A~N~~G~~~~ 93 (98)
T cd05758 31 PDRIVW-TWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQES-----DFQTSYNCTAWNSFGSGTA 93 (98)
T ss_pred CCEeEE-EECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccc-----ccceeEEEEEEcCCCcccE
Confidence 5 5999 889988764322233221 1 26999999763 2699999999999998664
No 92
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.89 E-value=1.5e-08 Score=54.84 Aligned_cols=52 Identities=12% Similarity=0.309 Sum_probs=37.6
Q ss_pred cEEEEEccCCeeeeccc--cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 2 YVLLWLIRDNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~--~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
|.+.| ++++..+.... ..+.....+.|.|.++..+ |+|.|.|.+.+..+...
T Consensus 25 ~~i~W-~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 25 ASVVW-LFQGGPLQRKEEPEERLLVTEDGLLIRSVSPA------DAGVYTCQSVEHGFKQT 78 (89)
T ss_pred ceEEE-EECCcccccccCcCceEEEcCCCEEEccCCHH------HCEEEEEEEecCcccee
Confidence 68999 88877665321 2344455567999999766 99999999998765444
No 93
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.86 E-value=5e-09 Score=57.47 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=37.6
Q ss_pred CcEEEEEccCCeeeec-cccceEEee-CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568 1 MYVLLWLIRDNTVIAY-VKDLRIALS-NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 59 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~-~~~~~~~~~-~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~ 59 (116)
.|.+.| ++++.++.. ....+.... +|.|.|.++.++ |+|.|.|.|+|.....
T Consensus 33 ~p~~~W-~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~------D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 33 DLSYRW-LLNEFPNFIPEDGRRFVSQTNGNLYIAKVEAS------DRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCEEEE-EECCcccccccCCCeEEeCCCCcEEEeecCHh------hCceeEEEEEecccCC
Confidence 378999 888876532 122233443 689999999766 9999999999986433
No 94
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.79 E-value=3.6e-08 Score=49.07 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=35.2
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
+.+.| ++++..+. ........+..|.|.++..+ |+|.|+|.+.|..|
T Consensus 17 ~~v~W-~~~~~~~~--~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~g 63 (63)
T smart00408 17 PNITW-LKDGKPLP--ESNRLSASGSTLTIKSVSLE------DSGEYTCVAENSAG 63 (63)
T ss_pred CeEEE-EECCEECC--CCCEEecCCcEEEEeeCCcc------cCEEEEEEEecCCC
Confidence 67999 77887765 22233344568999999665 99999999999764
No 95
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.76 E-value=2.4e-08 Score=62.95 Aligned_cols=52 Identities=17% Similarity=0.468 Sum_probs=38.1
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC-CceE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVIL 60 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~ 60 (116)
|+|+| ++||+++....+......++.|.|.++..+ |+|.|+|.++..+ |...
T Consensus 164 p~I~W-yKng~~l~~~~r~~~~~~~~~L~I~~V~~~------DsG~YtC~a~~~~~g~~y 216 (227)
T PHA02826 164 YTLTW-YKNGNIVLYTDRIQLRNNNSTLVIKSATHD------DSGIYTCNLRFNKNSNNY 216 (227)
T ss_pred ceEEE-EECCEECCCCCCEEEeCCCCEEEECcCCHH------hCEEEEEEEEEeECCEEE
Confidence 78999 999999864332222223458999999766 9999999999975 4433
No 96
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.75 E-value=5e-08 Score=52.21 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=35.2
Q ss_pred cEEEEEccCCeeeecc-c-c-ceE----EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 YVLLWLIRDNTVIAYV-K-D-LRI----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~-~-~-~~~----~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
|.+.| ..+++.+... . . .+. ......|.|.++..+ |+|.|.|.|.|..|...+
T Consensus 18 ~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 18 VDFQW-TYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLK------DSGTYTCAASSGTMDQKE 77 (84)
T ss_pred EEEEE-ecCCcccCCceEeecccccccceEEEEEEEECCCChh------hCEEEEEEEccCCCceEE
Confidence 67999 6666544321 0 0 001 112237999999766 999999999999987664
No 97
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.73 E-value=1.2e-07 Score=50.42 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=36.2
Q ss_pred CcEEEEEccCCeeeeccccce-EE--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLR-IA--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~-~~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
.|.|.| ++++..+....... .. .....|.|.++..+ |+|.|.|.+.|..|...
T Consensus 23 ~~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~Y~C~~~n~~g~~~ 78 (85)
T cd05729 23 RPTITW-LKDGKPFKKEHRIGGYKVRKKKWTLILESVVPS------DSGKYTCIVENKYGSIN 78 (85)
T ss_pred CCeEEE-EECCEECcccCceeEEEccCcEEEEEEeECCcc------cCEEEEEEEEECCceEE
Confidence 367999 88888765321111 11 11226888888655 99999999999998755
No 98
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.67 E-value=8.3e-08 Score=51.44 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=36.8
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
|.+.| ++++..+.. +....++.|.|.++..+ |+|.|.|.|.|..|...+
T Consensus 32 ~~i~W-~~~~~~~~~----~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 32 YTLVW-TRVGGGLPS----RAMDFNGILTIRNVQLS------DAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred cEEEE-EECCCcCCC----cccccCCEEEECCCCHH------HCEEEEEEEeccCCeEeE
Confidence 68999 677655432 12234568999999766 999999999999987765
No 99
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.63 E-value=2.1e-07 Score=51.59 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=37.4
Q ss_pred EEEEEccCCeeeec-c----ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 3 VLLWLIRDNTVIAY-V----KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 3 ~v~W~~~~g~~~~~-~----~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
.|+| +|++..+.. . .+.|....+..|.|.++..+ |+|.|.|.+.|.-....
T Consensus 42 ~v~W-yK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~e------DSG~Y~C~~rN~t~C~~ 97 (104)
T cd05896 42 SLMW-YKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQ------DSGLYTCVLRNSTYCMK 97 (104)
T ss_pred eEEE-EECCCCCCCCCcccccceeEEEeCCEEEEEeCChh------hCeEEEEEECCCCcceE
Confidence 6899 778654432 1 12366677889999999766 99999999999864433
No 100
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.63 E-value=8.7e-08 Score=51.30 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=36.8
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~ 64 (116)
+.+.| +++|..+.. ...+..|.|.+++.+ |+|.|.|.+.+..|...+..+
T Consensus 30 ~~~~w-~k~g~~~~~------~~~~~~l~I~~~~~~------dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 30 YKVTY-YRDGKAKKY------SHSNSNLSIPQATLS------DSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred eEEEE-EECCeEccc------cCCCceEEECccCHH------HCEEEEEEEEeCCceecCCCE
Confidence 46889 788876531 112457999999766 999999999999986666433
No 101
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.62 E-value=2.9e-07 Score=50.11 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=34.0
Q ss_pred cEEEEEcc-CCeeeec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEc-CCCceE
Q psy11568 2 YVLLWLIR-DNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVIL 60 (116)
Q Consensus 2 p~v~W~~~-~g~~~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n-~~g~~~ 60 (116)
|.|+|++. +|..... ....+....++.|.|.++.++ |+|.|+|.+.+ ..+...
T Consensus 25 p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~a~~~~~~~~~ 81 (91)
T cd05871 25 ASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRS------DAGVYTCTAVEHSFSQTL 81 (91)
T ss_pred ceEEEEEECCCCCccccccccccEEEecCeEEEeeCChh------HCEEEEEEEEccCCeEEE
Confidence 78999432 3322211 112345556678999999766 99999999984 555333
No 102
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.61 E-value=2.9e-07 Score=50.52 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=32.0
Q ss_pred CcEEEEEccCCeeeec------cccceEEee-----CCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 1 MYVLLWLIRDNTVIAY------VKDLRIALS-----NGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~------~~~~~~~~~-----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|.|.| ++++..+.. ..+.|+... +..|.|.++..+ |+|.|+|.+....
T Consensus 26 ~~~v~W-~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~------D~G~YtC~~~t~~ 85 (95)
T cd05882 26 NSSLQW-SNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLS------DEGEYTCSIFTMP 85 (95)
T ss_pred CCeEEE-eccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcc------cCEEEEEEEEeec
Confidence 378999 666553311 112233221 247999999766 9999999999843
No 103
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.61 E-value=8.5e-08 Score=52.52 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=35.3
Q ss_pred CcEEEEEccCCeeeeccccceEEe-eCCeEEecCCCCCCCCCCCCce-EEEEEEEcCCC
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIAL-SNGSLMFPPFPETGFRPDVHST-VYRCRASNEAG 57 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g 57 (116)
.|.|.| ++++...... +.|+.. .+|.|.|+++..+ |+| .|.|.|.|...
T Consensus 33 ~P~i~W-~~~~~~~i~~-~~Ri~~~~~GnL~fs~v~~~------D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 33 PLRIYW-MNSDLLHITQ-DERVSMGQNGNLYFANVEEQ------DSHPDYICHAHFPGL 83 (95)
T ss_pred CCEEEE-ECCCCccccc-cccEEECCCceEEEEEEehh------hCCCCeEEEEEcccc
Confidence 389999 5665443222 334443 5689999999766 999 89999999863
No 104
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.51 E-value=3.8e-07 Score=49.32 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=31.5
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.+...+ .+..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus 2 p~i~~~~-~~~~~~~G~~v~l~C~~~G~P~P~v~W~ 36 (88)
T cd05851 2 ADINVKF-KDTYALKGQNVTLECFALGNPVPVIRWR 36 (88)
T ss_pred CceEEcc-ccEEEeCCCcEEEEEEecccCCCEEEEE
Confidence 6777776 7788899999999999999999999997
No 105
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.51 E-value=2.9e-07 Score=48.84 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=35.5
Q ss_pred CcEEEEEccCCeeeeccc----cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568 1 MYVLLWLIRDNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 59 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~----~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~ 59 (116)
+|+|+| ++||+++.... ..+.....+.|.+...+.+ |.+.|+|.|.|..+..
T Consensus 14 ~a~i~W-~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~D------dg~~~~C~A~n~a~~~ 69 (80)
T cd05885 14 AATLRW-YRDRKELKGVISQQENGKTVSVSNTIRFPVDRKD------DGAILSCEASHPALVS 69 (80)
T ss_pred CCeEEE-EECCEECCCCcccccCCceEEEEEEEEEEeeecc------CCcEEEEEEEChhhCC
Confidence 478999 99999996422 1111112335777766544 9999999999997643
No 106
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.49 E-value=2.5e-07 Score=48.99 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=30.3
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
+.+.| ++||..+.. .++.|.|.++ .+ |+|.|+|.|.|.
T Consensus 31 ~~~~W-~kng~~l~~--------~~~~l~i~~~-~~------dsG~Y~C~a~~~ 68 (78)
T cd05752 31 NSTQW-YHNGKLLET--------TTNSYRIRAA-NN------DSGEYRCQTQGS 68 (78)
T ss_pred ccEEE-EECCEEeec--------cCCeEEEeec-cc------CCEEeEEECCCC
Confidence 35899 999987631 3557889888 66 999999999986
No 107
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.47 E-value=2.2e-06 Score=45.87 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.6
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
..|.|.++..+ |+|.|.|.|.|..+
T Consensus 46 s~L~I~~~~~~------DsG~Y~C~a~n~~~ 70 (84)
T cd05861 46 STLTFPHATVE------DSGTYECAAHESTQ 70 (84)
T ss_pred EEEEECCCCcC------CCEEEEEEEEECcc
Confidence 37999999665 99999999999865
No 108
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.44 E-value=4.6e-07 Score=45.78 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=27.6
Q ss_pred cEEEEEccCCeeeeccccceEEee-CCe----EEecCCCCCCCCCCCCceEEEEEE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALS-NGS----LMFPPFPETGFRPDVHSTVYRCRA 52 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~-~~~----l~i~~v~~~~~~~~~d~G~y~C~a 52 (116)
+.++| .+++..+..... ..... +.. |.|.++..+ |+|.|+|.+
T Consensus 17 ~~~~W-~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~v 64 (64)
T PF00047_consen 17 TTVTW-SKNGQSLPEGST-TNRSTNSVSSTSRLTISNVTPE------DSGTYTCVV 64 (64)
T ss_dssp SEEEE-EETTTTTSEEEE-EEEEETTTEEEEEEEESSCTGG------GTEEEEEEE
T ss_pred cEEEE-EECCccccCcce-eEeecccceeeeEEEEccCCHH------HCEEEEEEC
Confidence 67899 666655432111 11222 222 999999766 999999986
No 109
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.36 E-value=4.4e-06 Score=45.82 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=21.5
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 58 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~ 58 (116)
..|.|.++..+ |+|.|.|.+.+..+.
T Consensus 62 ~sL~I~~v~~~------DsG~Y~C~~~t~~~~ 87 (95)
T cd07701 62 LSISISDVSLS------DEGQYTCSLFTMPVK 87 (95)
T ss_pred EEEEECcCCcc------cCEEEEEEeEeecCc
Confidence 37999999766 999999999986444
No 110
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.34 E-value=1.2e-06 Score=47.96 Aligned_cols=36 Identities=36% Similarity=0.701 Sum_probs=32.0
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
|.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus 2 P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k 37 (100)
T cd07693 2 PRIVEHP-SDLIVSKGDPATLNCKAEGRPTPTIQWLK 37 (100)
T ss_pred CeEEecC-ceeEEcCCCeEEEEeeCCcCCCCEEEEEE
Confidence 6777776 78889999999999999999999999973
No 111
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.34 E-value=3.5e-06 Score=45.28 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=36.1
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
+++.| +.+|.++.. +.+.......|.|.++..+ |+|.|.|.+. ..|...
T Consensus 25 A~v~W-~~ng~~l~~--~~r~~~~~~GLlI~~~~~~------dsG~Y~C~s~-E~gf~~ 73 (85)
T cd05872 25 ASPVW-LFNGTPLNA--QFSYRVGTDGLLILVTSPE------HSGTYRCYSE-EEGFQQ 73 (85)
T ss_pred ccEEE-EECCcccCC--CcceEEeCCCCEEEECCHh------hCEEEEEEEe-cCCCeE
Confidence 57899 999888753 3455656667889999655 9999999987 344444
No 112
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.32 E-value=4.7e-06 Score=44.28 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=29.8
Q ss_pred cEEEEEccCCeeeeccccceEEeeCC-------eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNG-------SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~-------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
|.|+| +++|+++...........++ .|.+..... .|.|.|+|.+.|..
T Consensus 15 ~~v~W-~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~------~~~~~y~C~a~n~~ 69 (82)
T cd05759 15 AEIIW-FRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH------DTGRTFTCRARNEA 69 (82)
T ss_pred CEEEE-EECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee------cCCCEEEEEEcCcc
Confidence 68999 88999875421111112222 355554433 37889999999975
No 113
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.30 E-value=8.2e-06 Score=44.55 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.2
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV 58 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~ 58 (116)
.|.|.++..+ |+|.|.|.+.+....
T Consensus 63 ~L~I~~v~~~------DsG~Y~C~~~~~~~~ 87 (95)
T cd05717 63 SISISNVSLS------DEGRYTCSLYTMPVQ 87 (95)
T ss_pred EEEEccCCcc------cCEEEEEEEecCCCc
Confidence 6999999766 999999999987643
No 114
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.28 E-value=1.6e-06 Score=46.21 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=26.1
Q ss_pred CeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTP-KIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p-~i~W~ 115 (116)
.+..+..|+.+.|.|.+.|.|.| .|+|+
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~ 34 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVEILWW 34 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeEEEEE
Confidence 67888999999999999999999 79997
No 115
>smart00409 IG Immunoglobulin.
Probab=98.28 E-value=1.4e-05 Score=41.74 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=35.6
Q ss_pred cEEEEEccC-CeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 YVLLWLIRD-NTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p~v~W~~~~-g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+.+.| +++ +..+....+......+ ..|.|.++... |+|.|.|.+.+..+....
T Consensus 24 ~~~~W-~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00409 24 PEVTW-YKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASS 79 (86)
T ss_pred CeEEE-EECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEE
Confidence 57899 665 7766522222222222 47999999766 999999999988766553
No 116
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.28 E-value=1.4e-05 Score=41.74 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=35.6
Q ss_pred cEEEEEccC-CeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 YVLLWLIRD-NTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p~v~W~~~~-g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+.+.| +++ +..+....+......+ ..|.|.++... |+|.|.|.+.+..+....
T Consensus 24 ~~~~W-~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00410 24 PEVTW-YKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASS 79 (86)
T ss_pred CeEEE-EECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEE
Confidence 57899 665 7766522222222222 47999999766 999999999988766553
No 117
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.26 E-value=1.7e-06 Score=46.82 Aligned_cols=31 Identities=35% Similarity=0.754 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 86 PPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 86 ~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
++....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~ 36 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWII 36 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEE
Confidence 3466778899999999999999999999973
No 118
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.26 E-value=2.5e-06 Score=46.36 Aligned_cols=36 Identities=22% Similarity=0.640 Sum_probs=31.9
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
|.++..| ....+.+|+.+.|.|.+.|.|.|.+.|+.
T Consensus 4 ~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k 39 (92)
T cd05747 4 ATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMR 39 (92)
T ss_pred CcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEE
Confidence 6666666 78899999999999999999999999973
No 119
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.26 E-value=2.3e-06 Score=46.06 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=29.8
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
+.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus 2 ~~~~~~p-~~~~~~~g~~v~l~C~~~g~P~p~v~W~k 37 (88)
T cd04968 2 SIIVVFP-KDTYALKGQNVTLECFALGNPVPQIKWRK 37 (88)
T ss_pred CcEEECC-CceEEeCCCcEEEEEEeeEeCCCEEEEEE
Confidence 3444444 77888899999999999999999999973
No 120
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.25 E-value=5.2e-06 Score=44.67 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.1
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
..|.|.++..+ |+|.|+|.|.|..|...+
T Consensus 50 s~L~I~~~~~~------DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 50 STLTIENVTLS------DLGRYTCTASSGQMIAKN 78 (86)
T ss_pred eEEEEecCCcc------cCEEEEEEEeecceEecc
Confidence 47999999766 999999999998875553
No 121
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.23 E-value=3.5e-06 Score=46.46 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=30.5
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.|+..+ ....+..|+.+.|.|.+.|.|+|.+.|+
T Consensus 1 p~~~~~p-~~~~v~~G~~v~l~C~~~G~p~p~v~W~ 35 (98)
T cd05762 1 PQIIQFP-EDMKVRAGESVELFCKVTGTQPITCTWM 35 (98)
T ss_pred CceEECC-cCEEEECCCEEEEEEEEcccCCCceEEE
Confidence 4455565 7888999999999999999999999997
No 122
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.16 E-value=1.6e-05 Score=41.51 Aligned_cols=48 Identities=29% Similarity=0.456 Sum_probs=32.8
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~ 64 (116)
+.+.| ++++..+... .+.+.+.++..+ |+|.|+|.+.+..+...+..+
T Consensus 29 ~~~~w-~~~~~~~~~~--------~~~~~~~~~~~~------~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 29 PQVQW-YKNGSPINSS--------QNGLFIPNVSPE------DSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp SEEEE-EETTEEEEEE--------SSEEEESSEEGG------GTEEEEEEEEETTEEEEEEEE
T ss_pred eeeee-eeeeeeeeee--------eeeeeeeeeccc------cCEEEEEEEEeCCCCeEeeeE
Confidence 57889 6777766521 122667777655 999999999997765554433
No 123
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.15 E-value=5.7e-06 Score=45.24 Aligned_cols=35 Identities=40% Similarity=0.804 Sum_probs=27.7
Q ss_pred CceEecCCCeEEEe---CCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFS---NESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~---~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.|+..| .+..+. +|+.+.|.|.+.|.|.|.++|+
T Consensus 2 P~f~~~p-~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~ 39 (94)
T cd05848 2 PVFVQEP-DDAIFPTDSDEKKVILNCEARGNPVPTYRWL 39 (94)
T ss_pred CeeEECC-CcEEccCCCCCCEEEEEEEeeecCCCEEEEE
Confidence 6676666 444443 4789999999999999999997
No 124
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.14 E-value=4.9e-06 Score=44.72 Aligned_cols=36 Identities=25% Similarity=0.689 Sum_probs=31.2
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
|.|...+ ....+.+|+++.|.|.+.|.|.|.+.|++
T Consensus 1 P~~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~ 36 (90)
T PF07679_consen 1 PVFTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYK 36 (90)
T ss_dssp EEEEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEE
T ss_pred CEEEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccc
Confidence 4555666 88999999999999999999999999973
No 125
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.13 E-value=1.6e-05 Score=43.81 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=34.1
Q ss_pred EEEEEccCCeeeeccccceEEe-----eC---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 3 VLLWLIRDNTVIAYVKDLRIAL-----SN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~~~~-----~~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.|.| ..++..+......++.. .+ ..|.|.++.+. .+.|.|.|.|.|.+|....
T Consensus 33 ~i~W-~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~-----d~~g~Y~C~a~N~~G~d~~ 93 (98)
T cd05898 33 RIAW-AWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEA-----DFQTHYNCTAWNSFGSGTA 93 (98)
T ss_pred EEEE-EEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccc-----cCCcEEEEEEEeCCccceE
Confidence 4688 55555654322223322 11 26999999654 1489999999999998764
No 126
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.13 E-value=6.8e-06 Score=45.19 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=29.1
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.+. .+ .+..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus 3 p~i~-~~-~~~~~~~G~~v~l~C~~~G~P~p~i~W~ 36 (98)
T cd05870 3 PHII-QL-KNETTVENGAATLSCKAEGEPIPEITWK 36 (98)
T ss_pred CEEE-ee-ccEEEcCCCcEEEEEecccCCCCeEEEE
Confidence 5553 34 6788899999999999999999999997
No 127
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.11 E-value=8.3e-06 Score=41.97 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=20.6
Q ss_pred eeCCeEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568 24 LSNGSLMFPPFPETGFRPDVHSTVYRCRASN 54 (116)
Q Consensus 24 ~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n 54 (116)
..++.|.|.++..+ |.|.|+|.|.|
T Consensus 51 ~~~~~L~i~~v~~~------~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRS------DNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGG------GTEEEEEEEEE
T ss_pred ceeeEEEEccCCHH------hCcEEEEEEEC
Confidence 34558999999766 99999999987
No 128
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.10 E-value=9.1e-06 Score=44.15 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 86 PPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 86 ~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
.+....+.+|+++.|.|.+.|.|.|.++|+.
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k 37 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK 37 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEE
Confidence 3466788899999999999999999999973
No 129
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.09 E-value=5.5e-06 Score=44.39 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=26.3
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
.+..+..|+.+.|.|.+.|.|.|.++|+
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~ 34 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWL 34 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEE
Confidence 6788889999999999999999999996
No 130
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.09 E-value=8e-06 Score=44.64 Aligned_cols=36 Identities=28% Similarity=0.626 Sum_probs=28.1
Q ss_pred CceEecCCCeEEEeCC---CcEEEEeeecCcCCceeEEeC
Q psy11568 80 PLFRIEPPYRFEFSNE---SGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g---~~~~l~C~~~g~P~p~i~W~~ 116 (116)
|.|...| ....+.+| +++.|.|.+.|.|.|.++|++
T Consensus 2 P~f~~~P-~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~ 40 (94)
T cd05850 2 PVFEEQP-SSLLFPEGSPEEKVTLGCRARASPPATYRWKM 40 (94)
T ss_pred CeeEECC-CCEEecCCCCCCeEEEEeEceeCCCCEEEEEE
Confidence 5666665 56655555 579999999999999999973
No 131
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.06 E-value=1.1e-05 Score=44.10 Aligned_cols=35 Identities=26% Similarity=0.637 Sum_probs=26.4
Q ss_pred CceEecCCCeEEEeC---CCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSN---ESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~---g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.|...| ....+.+ |..+.|.|.+.|.|.|.++|+
T Consensus 2 P~f~~~P-~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~ 39 (93)
T cd05849 2 PVFEEQP-IDTIYPEESTEGKVSVNCRARANPFPIYKWR 39 (93)
T ss_pred CEEEECC-CCEEecCCccCCeEEEeCcCccCCCCEEEEE
Confidence 5566555 4444443 347999999999999999997
No 132
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.04 E-value=1.2e-05 Score=43.89 Aligned_cols=33 Identities=39% Similarity=0.694 Sum_probs=28.0
Q ss_pred eEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 82 ~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|...| ....+.+|+++.|.|.+.|.|.|.++|+
T Consensus 2 f~~~P-~~~~~~~g~~v~l~C~v~g~P~p~i~W~ 34 (95)
T cd05722 2 FLSEP-SDIVAVRGGPVVLNCSAEGEPPPKIEWK 34 (95)
T ss_pred cEECC-CCeEEcCCCCEEEeeecccCCCCEEEEE
Confidence 34455 6677788999999999999999999997
No 133
>PHA03376 BARF1; Provisional
Probab=98.03 E-value=3.4e-05 Score=47.15 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=42.2
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g 106 (116)
+|.|.+++.+ |.|.|+|.......... ...+.+..+.. +.+.. ....+...+...+.|.+.|
T Consensus 88 sLvI~~l~lS------DdGtY~C~fQkge~~~~k~ehLt~V~~~~----------Lsv~a-~~~dFp~~~~~~i~C~sgg 150 (221)
T PHA03376 88 FLVVTAANIS------HDGNYLCRMKLGETEVTKQEHLSVVKPLT----------LSVHS-ERSQFPDFSVLTVTCTVNA 150 (221)
T ss_pred EEEEEeeeec------CCceEEEEEEcCCCceeeeeeeeeeecce----------EEEEe-ccccCCCCCeeEEEEecCC
Confidence 6888999655 99999999877643222 22222211100 11111 1111122567788899888
Q ss_pred cCCceeEEe
Q psy11568 107 SPTPKIEWL 115 (116)
Q Consensus 107 ~P~p~i~W~ 115 (116)
-|.|.++|.
T Consensus 151 fP~P~~~Wl 159 (221)
T PHA03376 151 FPHPHVQWL 159 (221)
T ss_pred cCCchheec
Confidence 999999995
No 134
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.01 E-value=9.7e-05 Score=41.27 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.9
Q ss_pred EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568 23 ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 58 (116)
Q Consensus 23 ~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~ 58 (116)
...+++|.|.++++. |+|.|.|.+.+....
T Consensus 66 ~~~ngSL~I~~v~~~------D~G~Y~~~v~~~~~~ 95 (105)
T cd05774 66 IYPNGSLLIQNVTQK------DTGFYTLQTITTNFQ 95 (105)
T ss_pred EeCCCcEEEecCCcc------cCEEEEEEEEeCCcc
Confidence 455789999999766 999999999988643
No 135
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.97 E-value=2.3e-05 Score=43.03 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=27.8
Q ss_pred ceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEeC
Q psy11568 81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWLI 116 (116)
Q Consensus 81 ~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~~ 116 (116)
.++..+ ....+..|+.+.|.|.+.|.|.| .++|+.
T Consensus 3 p~i~~~-~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~ 38 (98)
T cd05758 3 PIITSE-ATQYAILGDKGRVECFIFSTPPPDRIVWTW 38 (98)
T ss_pred CeEcCC-CcEEEeCCCcEEEEEEEcccCCCCEeEEEE
Confidence 333444 56677889999999999999999 599963
No 136
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=97.97 E-value=1.7e-05 Score=42.64 Aligned_cols=28 Identities=25% Similarity=0.499 Sum_probs=25.1
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
....+..|+.+.|.|.+.|.|.|.++|+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~ 30 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWS 30 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEE
Confidence 3566788999999999999999999996
No 137
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.97 E-value=2.4e-05 Score=42.89 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=27.5
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus 3 p~i~~~~-~~~~~~~g~~v~l~C~~~G~P~P~v~W~ 37 (97)
T cd05869 3 PKITYVE-NQTAMELEEQITLTCEASGDPIPSITWR 37 (97)
T ss_pred ceEEEcc-CceEEEcCCCEEEEEEeeEeCCCEEEEE
Confidence 5555554 3445556899999999999999999997
No 138
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.96 E-value=1.8e-05 Score=43.30 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.6
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV 58 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~ 58 (116)
.|.|.++..+ |+|+|.|.+.|..+.
T Consensus 66 ~L~I~~l~~s------DsgtY~C~v~~~~~~ 90 (94)
T cd07690 66 PLIIKNLKIE------DSDTYICEVEDKKEE 90 (94)
T ss_pred EEEECCCCHH------HCEEEEEEECCccce
Confidence 5999999766 999999999998653
No 139
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.92 E-value=0.00022 Score=39.13 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=25.0
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~ 62 (116)
.+|.|.+++.+ |+|.|.|...+..|.....
T Consensus 61 ~sL~I~~~~~~------DsG~Y~c~v~~~~~~~~~~ 90 (97)
T cd05775 61 YSLQISNLKME------DAGSYRAEINTKNGVTITK 90 (97)
T ss_pred eeEEECCCchH------HCEEEEEEEEcCCCCeEEE
Confidence 47999999766 9999999999887766543
No 140
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.89 E-value=0.00026 Score=38.14 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.1
Q ss_pred eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 25 ~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.+++|.|.+++.+ |+|.|.|......+....
T Consensus 55 ~~~sL~I~~l~~~------DsG~Y~c~v~~~~~~~~~ 85 (92)
T cd05741 55 PNGSLLIQNLTKE------DSGTYTLQIISTNGVTEN 85 (92)
T ss_pred CCceEEEccCCch------hcEEEEEEEEcCCCcEEE
Confidence 4568999999766 999999999988755443
No 141
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.86 E-value=3.5e-05 Score=41.98 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=28.4
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.+. .+ .+..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus 3 P~i~-~~-~~~~~~~g~~v~l~C~~~g~p~p~v~W~ 36 (96)
T cd05732 3 PKIT-YL-ENQTAVELEQITLTCEAEGDPIPEITWR 36 (96)
T ss_pred ccce-ec-CceeEecCCcEEEEEEEeEcCCCcEEEE
Confidence 5553 33 5677889999999999999999999997
No 142
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=97.86 E-value=3.4e-05 Score=42.01 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=25.3
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
....+..|+++.|.|.+.|.|.|.++|+
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~ 38 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWT 38 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEE
Confidence 4557788999999999999999999997
No 143
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.81 E-value=0.00014 Score=39.92 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=22.5
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
+|.|.++..+ |+|.|.|.+.+..+...
T Consensus 66 sL~I~~v~~~------D~G~Y~C~v~~~~~~~~ 92 (100)
T cd05713 66 ALRIHNVRAS------DEGLYTCFFQSDGFYEE 92 (100)
T ss_pred EEEEEcCChh------hCEEEEEEEecCCcEEE
Confidence 6999999766 99999999998766533
No 144
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.77 E-value=0.0003 Score=38.95 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=36.6
Q ss_pred cE-EEEEccCCeeeeccccceEEee-------CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEE
Q psy11568 2 YV-LLWLIRDNTVIAYVKDLRIALS-------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV 66 (116)
Q Consensus 2 p~-v~W~~~~g~~~~~~~~~~~~~~-------~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v 66 (116)
|+ +.| .+++..+........... ...|.|.+++.+ |+|.|+|.|.|...... ++.|.|
T Consensus 33 p~~~~W-~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~------E~G~YTf~a~N~~~~~s~tF~l~v 99 (101)
T cd05860 33 PEHQQW-IYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGT------EGGTYTFLVSNSDASASVTFNVYV 99 (101)
T ss_pred CeeeEE-EcCCcccCccccceeEEeccCceEEEEEEEEeecChh------hCcEEEEEEECCCCeEEEEEEEEE
Confidence 44 899 777766543211111111 125888888666 99999999999986655 354443
No 145
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.76 E-value=0.00047 Score=37.61 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=22.3
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEc-CCCceEE
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVILS 61 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n-~~g~~~~ 61 (116)
..|.|.++..+ |+|.|.|...+ ..|....
T Consensus 62 ~sL~I~~v~~~------D~G~Y~C~v~~~~~g~~~~ 91 (98)
T cd05718 62 ATISISNLRLE------DEGNYICEFATFPQGNRQK 91 (98)
T ss_pred eEEEEccCCcc------cCEEEEEEEEeCCCCcEEE
Confidence 37999999766 99999999876 3455443
No 146
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.74 E-value=5.9e-05 Score=41.02 Aligned_cols=29 Identities=24% Similarity=0.593 Sum_probs=26.2
Q ss_pred CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 87 PYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 87 ~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~ 36 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWF 36 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEE
Confidence 35678889999999999999999999997
No 147
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=97.74 E-value=5.4e-05 Score=40.28 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=24.3
Q ss_pred eEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 89 RFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 89 ~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
...+.+|+.+.|.|.+.|.|.|.++|+
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~ 29 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWL 29 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEE
Confidence 356778999999999999999999997
No 148
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=97.71 E-value=7.3e-05 Score=41.06 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.5
Q ss_pred CeEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPT-PKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~-p~i~W~ 115 (116)
....+..|+++.|.|.+.|.|. |.++|+
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~ 36 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWF 36 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEE
Confidence 4557788999999999999995 799997
No 149
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.68 E-value=9.2e-05 Score=41.06 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=25.9
Q ss_pred CeEEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQG-SPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g-~P~p~i~W~ 115 (116)
....+.+|+.+.|.|.+.| .|+|.++|+
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~ 39 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWT 39 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEE
Confidence 5778889999999999999 999999997
No 150
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.67 E-value=0.00062 Score=37.42 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceEE
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVILS 61 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~~ 61 (116)
+.+|.|.+++.+ |+|.|.|...+- .|...+
T Consensus 59 d~sl~i~nv~~~------D~G~Y~C~v~tfP~G~~~~ 89 (96)
T cd05887 59 DATIMLENVGFS------DIGVYICKAVTFPLGNTQS 89 (96)
T ss_pred ccEEEEeCCCcc------ccEEEEEEEEeCCCCCeeE
Confidence 458999999766 999999997665 566554
No 151
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.66 E-value=0.00023 Score=39.33 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=22.7
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceE
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVIL 60 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~ 60 (116)
.+|.|.+++.+ |+|.|.|...+. .|...
T Consensus 63 aSi~i~nl~~~------D~G~Y~C~v~t~P~g~~~ 91 (99)
T cd05886 63 GTISLSRLELE------DEGVYICEFATFPTGNRE 91 (99)
T ss_pred ceEEEcCCccc------cCEEEEEEEEeCCCCCeE
Confidence 57999999766 999999999994 55433
No 152
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.64 E-value=0.00015 Score=39.25 Aligned_cols=36 Identities=39% Similarity=0.821 Sum_probs=26.3
Q ss_pred CceEecCCCeEEEeC---CCcEEEEeeecCcCCceeEEeC
Q psy11568 80 PLFRIEPPYRFEFSN---ESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 80 p~~~~~~~~~~~~~~---g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
|.|...| ....+.. |+++.|.|.+.|.|.|.++|+.
T Consensus 2 P~f~~~p-~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k 40 (91)
T cd04967 2 PVFEEQP-DDTIFPEESDEGKVSLNCRARGSPPPTYRWLM 40 (91)
T ss_pred CeeEeCC-CCEEccCCCCCCEEEEEEeeeEcCCCEEEEEE
Confidence 5555555 4444333 4679999999999999999973
No 153
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.64 E-value=0.00012 Score=40.16 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=25.8
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
.+..+..|+++.|.|.+.+.|.|.+.|+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~ 32 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWS 32 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEe
Confidence 5678889999999999999999999995
No 154
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=97.64 E-value=0.0001 Score=39.20 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=25.5
Q ss_pred CeEEEeCCCcEEEEeee-cCcCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAA-QGSPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~-~g~P~p~i~W~~ 116 (116)
....+.+|+++.|.|.+ .|.|.|.+.|+.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k 33 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRK 33 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEE
Confidence 56778889999999998 799999999973
No 155
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.62 E-value=0.00013 Score=39.98 Aligned_cols=28 Identities=11% Similarity=0.362 Sum_probs=26.2
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
++..+.+|+++.|.|.+.+.|.|.+.|+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~ 32 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWS 32 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEe
Confidence 6788899999999999999999999996
No 156
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.55 E-value=0.0022 Score=35.21 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceE
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVIL 60 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~ 60 (116)
+.+|.|.+++.+ |+|.|+|...+. .|...
T Consensus 59 d~sI~i~nvt~~------D~G~Y~C~~~t~P~g~~~ 88 (96)
T cd05889 59 DMSLSFNNATEE------DVGLYCCSLVTYPQGSWE 88 (96)
T ss_pred ccEEEEcCCCcc------cCEEEEEEEEeCCCCCeE
Confidence 357999999766 999999998776 45443
No 157
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.53 E-value=0.00038 Score=38.67 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK 67 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~ 67 (116)
.|.|.+++.+ |+|.|.|.+.+..+... ...|.|.
T Consensus 69 sL~I~~v~~s------D~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 69 SLVITDLRLE------DSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred eEEECCCCHH------HCEEEEEEEEcCCCceEEEEEEEEE
Confidence 7999999766 99999999998765443 2444444
No 158
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.52 E-value=0.0009 Score=36.92 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=22.0
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcC-CCce
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVI 59 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~ 59 (116)
..|.|.+++.+ |+|.|.|...+. .|..
T Consensus 64 ~sL~I~nv~~s------D~GtY~C~v~~~p~g~~ 91 (100)
T cd05888 64 GALILRNAVQA------DEGKYKCRVITFPAGNF 91 (100)
T ss_pred eEEEEecCccc------cceEEEEEEEeCCCCCe
Confidence 37999999766 999999999884 5544
No 159
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.52 E-value=0.00022 Score=39.09 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.8
Q ss_pred CceEecCCCeEEEeCCCcEEEEee-ecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCA-AQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~-~~g~P~p~i~W~ 115 (116)
|.|.....+...+.+|+.+.|.|. ..|.|.|.+.|+
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~ 39 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWM 39 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEE
Confidence 334333346788899999999996 699999999996
No 160
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.52 E-value=0.0013 Score=35.08 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=29.6
Q ss_pred CcEEEEEccCCeeeeccccceEEeeC-----CeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 1 MYVLLWLIRDNTVIAYVKDLRIALSN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 1 ~p~v~W~~~~g~~~~~~~~~~~~~~~-----~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.++|+| +++|+++............ +.|.+. +.++ .|...|+|.|.|..
T Consensus 14 ~A~I~W-~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~-p~~e-----DdG~~~~C~a~~~~ 67 (82)
T cd05883 14 AATIRW-FKGNKELTGKSTVEETWSRMFTVTSQLMLK-VTKE-----DDGVPVICLVDHPA 67 (82)
T ss_pred CCEEEE-EECCEECcCcccceeccCCCcEEEEEEEEE-Cchh-----hCCCEEEEEEcCcc
Confidence 378999 9999988642111101111 135553 3333 37789999999975
No 161
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.52 E-value=0.00033 Score=38.91 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=26.4
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK 67 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~ 67 (116)
.|.|.++..+ |+|.|.|...+..+.... ..|.|.
T Consensus 69 sL~I~~v~~~------DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 69 SLVITDLRLE------DYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEccCChH------HCEEEEEEEEecccceEEEEEEEEE
Confidence 6999999665 999999999988776553 455554
No 162
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.50 E-value=0.00015 Score=38.13 Aligned_cols=26 Identities=42% Similarity=0.808 Sum_probs=22.9
Q ss_pred EEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 90 FEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 90 ~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
.....|+.+.|.|.+.|.|.|.++|+
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~ 29 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWL 29 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEE
Confidence 34566999999999999999999997
No 163
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.49 E-value=0.00037 Score=36.76 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.9
Q ss_pred CeEEEeCCCcEEEEeeecCcCC-ceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPT-PKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~-p~i~W~~ 116 (116)
....+.+|+++.|.|.+.+.|. +.+.|+.
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k 37 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYH 37 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCccEEEEE
Confidence 6778889999999999999886 4699973
No 164
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.47 E-value=0.00043 Score=36.86 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.5
Q ss_pred CCCeEEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568 86 PPYRFEFSNESGGRLDCAAQG-SPTPKIEWL 115 (116)
Q Consensus 86 ~~~~~~~~~g~~~~l~C~~~g-~P~p~i~W~ 115 (116)
++....+..|+++.|.|.+.+ .|.|.+.|+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~ 37 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWT 37 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEE
Confidence 346778888999999999975 789999996
No 165
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.45 E-value=0.0017 Score=35.58 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=19.7
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
+|.|.++..+ |+|.|.|.+....
T Consensus 63 tL~I~~vq~~------D~G~Y~Cqv~t~p 85 (95)
T cd05881 63 RVSLSNVSLS------DEGRYFCQLYTDP 85 (95)
T ss_pred EEEECcCCcc------cCEEEEEEEEccc
Confidence 5999999666 9999999998754
No 166
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.44 E-value=0.00024 Score=39.36 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.1
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
....+..|+.+.|.|.+.|.|+|.++|+
T Consensus 11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~ 38 (101)
T cd05859 11 QLEFANLHEVKEFVVEVEAYPPPQIRWL 38 (101)
T ss_pred ceEEEecCCcEEEEEEEEEeCCCceEEE
Confidence 3567778999999999999999999997
No 167
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.41 E-value=0.001 Score=35.34 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=27.7
Q ss_pred cEEEEEccCCeeeeccccceEEe-eCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIAL-SNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~-~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
+.|+| +++|+++.... ..... .++ .|.+.... ..+.+.|+|.+.+...
T Consensus 15 ~~v~W-~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~------~d~g~~~~C~v~h~~l 69 (82)
T cd05761 15 ATIRW-FKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDR------EDDGAPIICRVDHPAL 69 (82)
T ss_pred CeEEE-EECCEEccCce-eeEecCCCCEEEEEEEEEEEcch------hhCCCEEEEEEeChhc
Confidence 68999 99999886321 11111 122 23332222 2256799999999853
No 168
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.41 E-value=0.00036 Score=37.89 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=25.0
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
++..+.+|+.+.|.|.+.|. .|.++|+
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~ 37 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWV 37 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEE
Confidence 67788899999999999999 9999997
No 169
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.40 E-value=0.0032 Score=35.59 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.1
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
.+|.|.+++.+ |+|.|.|...+...
T Consensus 74 asL~I~nl~~s------DsG~Y~C~V~~g~~ 98 (112)
T cd05900 74 ATLEITELRSN------DSGTYRCEVMHGIE 98 (112)
T ss_pred cEEEEeecccc------cCEEEEEEEecCCC
Confidence 37999999766 99999999997653
No 170
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.40 E-value=0.0004 Score=38.97 Aligned_cols=36 Identities=33% Similarity=0.550 Sum_probs=25.6
Q ss_pred CceEecCCCeEEEe---CCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFS---NESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~---~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.+...+.....+. .|+.+.|.|.+.|.|.|.++|+
T Consensus 5 P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~ 43 (109)
T cd05773 5 PDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWA 43 (109)
T ss_pred cccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEE
Confidence 55555542222222 3678999999999999999997
No 171
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.36 E-value=0.00028 Score=38.25 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=20.0
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
..+.|.+++.+ |+|.|+|.+.+..
T Consensus 53 ~~f~i~~v~~~------~~G~Y~C~~~~~~ 76 (91)
T cd05751 53 AKFFIPSMKRE------HAGRYRCYYRSGV 76 (91)
T ss_pred EEEEccCCChh------HCEEEEEEEECCC
Confidence 36889999665 9999999999863
No 172
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.32 E-value=0.00052 Score=37.36 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=24.5
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
.+..+..|+++.|.|.+.|.|. .+.|+
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~ 34 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWY 34 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEE
Confidence 6677888999999999999998 89997
No 173
>KOG3515|consensus
Probab=97.32 E-value=0.0004 Score=50.48 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=47.2
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCC--ceE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG--VIL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g--~~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~ 103 (116)
.+.+...+.+ +.|+|+|.|.|... ... ...+.+.++ + ....+........+.+|+.+.|.|.
T Consensus 164 ~l~~~v~Rka------~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~-~-------~~~~~~~~~~~qsF~~g~~inlvc~ 229 (741)
T KOG3515|consen 164 LLKQTVSRKA------DNGNYTCPANNRNSPGLSFAKQLTIIVEAP-C-------KGIGITGAQEQQSFTEGQTINLVCN 229 (741)
T ss_pred ceeeEEEEec------CCceeEcccccccCccccccceeEeecccc-c-------ccceecchhhcCcccccceEEEEeh
Confidence 4556555444 99999999999632 222 233444442 0 1233333333467788999999997
Q ss_pred ecC-cCCceeEEe
Q psy11568 104 AQG-SPTPKIEWL 115 (116)
Q Consensus 104 ~~g-~P~p~i~W~ 115 (116)
+.+ +|.+.++|+
T Consensus 230 ~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 230 AQGGNPSQQQTWY 242 (741)
T ss_pred hhcCCcchhhhhc
Confidence 754 799999996
No 174
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.26 E-value=0.005 Score=34.58 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.0
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV 66 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v 66 (116)
.|.|.+++.+ |+|.|.|.......... ...|.|
T Consensus 73 sL~I~~l~~s------D~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 73 SLEISRLRSS------DSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred EEEECCCChh------hCEEEEEEEEeCCCcceEEEEEEE
Confidence 6999999766 99999999988653333 244444
No 175
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.21 E-value=0.0015 Score=36.00 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=23.8
Q ss_pred CeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTP-KIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p-~i~W~ 115 (116)
....+.+|+++.|.|.+.+.|+| .|.|.
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~ 37 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWA 37 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEE
Confidence 67888899999999999998988 45674
No 176
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.17 E-value=0.0018 Score=34.54 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=28.1
Q ss_pred cEEEEEccCCeeeeccccceEEeeC-CeEEecC-C--CCCCCCCCCCceEEEEEEEcCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSN-GSLMFPP-F--PETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~-~~l~i~~-v--~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
+.|+| ++||+++...........+ ++..+.. + ... ...|...|+|.+.+..
T Consensus 15 ~~ItW-~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~---~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 15 ANIKW-RKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVT---REDDGAEITCSVGHES 69 (83)
T ss_pred CEeEE-EECCEECCCcceeEEECCCCCEEEEEEEEEEEec---chhCCCEEEEEEECcc
Confidence 58999 9999987642211111222 2322211 1 011 1236789999999985
No 177
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.17 E-value=0.00088 Score=35.97 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=24.2
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
....+..|+.+.|.|.+.+ |.+.+.|+.
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k 31 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLF 31 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEE
Confidence 5667788999999999987 889999973
No 178
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.15 E-value=0.00098 Score=35.95 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=23.9
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
....+..|+++.|.|.+.+ |.|.++|++
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ 31 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKF 31 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEE
Confidence 6778889999999999864 788999974
No 179
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.14 E-value=0.0013 Score=35.73 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.7
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
....+..|+++.|.|.+.|.| +.++|+
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p-~~i~W~ 34 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEP-KDISWF 34 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeC-CeEEEE
Confidence 557788899999999999997 499997
No 180
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.10 E-value=0.0016 Score=37.06 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
++.|.+++.+ |.|.|+|...|..+
T Consensus 81 SI~I~nv~~s------D~G~Y~C~v~n~p~ 104 (116)
T cd05879 81 SIVIHNLDYT------DNGTFTCDVKNPPD 104 (116)
T ss_pred EEEEccCCcc------cCEEEEEEEEcCCC
Confidence 7999999766 99999999999854
No 181
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.07 E-value=0.00093 Score=36.50 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=25.0
Q ss_pred CeEEEeCCCcEEEEeeecC-----cCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQG-----SPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g-----~P~p~i~W~~ 116 (116)
....+.+|+.+.|.|.+.| .|.|.++|+.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk 40 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYK 40 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEE
Confidence 4566778999999999999 7999999973
No 182
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.03 E-value=0.0017 Score=35.32 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=25.4
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
+...+.+|+++.|.|.+.+.|.+.+.|+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~ 32 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWS 32 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEe
Confidence 5678889999999999999999999996
No 183
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.02 E-value=0.0044 Score=35.31 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=25.2
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK 67 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~ 67 (116)
+|.|.+++.. |+|.|.|.......... ...|.|.
T Consensus 80 sL~i~~v~~s------D~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 80 SLTIVKLRAS------DAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEEEcccccc------cCEEEEEEEEECCcccEEEEEEEEE
Confidence 7999999766 99999999988764444 2444443
No 184
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.98 E-value=0.00074 Score=36.57 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=29.0
Q ss_pred cEEEEEccCCeeeecccc--ceEEeeCCe------EEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 2 YVLLWLIRDNTVIAYVKD--LRIALSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~--~~~~~~~~~------l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
+.|+| ++||.++..... ......+++ |.+.... ..|.|.|.|.+.+...
T Consensus 30 ~~i~W-~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~------~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 30 ITVTW-LKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSD------WNSGDTYTCVVTHESL 86 (95)
T ss_pred cEEEE-EECCEECCCceeccccccCCCCCEEEEEEEEECHHH------hCCCCCEEEEEEeCCC
Confidence 47899 899998864221 111222332 3332221 1389999999999753
No 185
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.96 E-value=0.0023 Score=31.41 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=30.1
Q ss_pred cEEEEEccCCeeeecccc------ceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 2 YVLLWLIRDNTVIAYVKD------LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~------~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
+.+.| ++++........ .........|.|.++... |.|.|.|.+.+..
T Consensus 13 ~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~y~C~~~~~~ 66 (74)
T cd00096 13 PTITW-LKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE------DSGTYTCVASNSA 66 (74)
T ss_pred CcEEE-EECCEECCCcccEEeccccCcceeEEEEEECccCcc------cCcEEEEEEecCc
Confidence 56889 666655432110 011122336888888655 9999999998876
No 186
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.96 E-value=0.0089 Score=33.67 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
+|.|.+++.+ |+|.|.|......
T Consensus 73 sL~i~nv~~~------D~G~Y~C~v~~g~ 95 (110)
T cd05902 73 SLVLSRLRYS------DSGTYRCEVVLGI 95 (110)
T ss_pred EEEECCCCHH------HCEEEEEEEEECC
Confidence 7999999766 9999999998865
No 187
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=96.95 E-value=0.0021 Score=33.74 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=23.1
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
....+..|+.+.|.|.+.+. .|.+.|+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~ 28 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWT 28 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEe
Confidence 45677889999999999996 5789997
No 188
>PHA02633 hypothetical protein; Provisional
Probab=96.94 E-value=0.004 Score=31.20 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=25.2
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEe
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA 68 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~ 68 (116)
+..|.|-+...+ |+|.|.|..+|.--... +..+.|..
T Consensus 17 ~~nLwilpa~~s------DSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 17 CNNMLILNPTQS------DSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cccEEEeccccc------cCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 347888888655 99999999998743322 45555543
No 189
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.89 E-value=0.0024 Score=40.98 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=35.5
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
|...|...+|+.+... ..-...+.|.|.+.+.... ++|.|+|......
T Consensus 13 P~y~W~GP~g~~l~gn-~~~nIT~TG~L~~~~F~es------mSG~YTCtLsYk~ 60 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGN-SYVNITETGKLMFKNFQES------MSGSYTCTLSYKP 60 (271)
T ss_pred CceEEECCCCcccCCC-CeEEEccCceEEeeccccc------cCCceEEEEEEEe
Confidence 7889977778877631 2223456678999999665 9999999977653
No 190
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=96.86 E-value=0.0025 Score=33.45 Aligned_cols=26 Identities=42% Similarity=0.838 Sum_probs=22.8
Q ss_pred EEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 90 FEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 90 ~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
..+..|+.+.|.|.+.+.|.|.+.|+
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~ 29 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWL 29 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEE
Confidence 34557999999999999999999996
No 191
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=96.74 E-value=0.0032 Score=32.52 Aligned_cols=34 Identities=24% Similarity=0.693 Sum_probs=26.2
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
|.+...+ ..+..|+.+.|.|.+.+.|.+.+.|++
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~~~~p~~~~~w~~ 35 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSVSGNPPPQVQWYK 35 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEEESSSSSEEEEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEEEcccceeeeeee
Confidence 4444443 346889999999999999999999973
No 192
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.66 E-value=0.0085 Score=31.93 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=27.1
Q ss_pred cEEEEEccCCeeeeccccceEEee-CC------eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALS-NG------SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~-~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
..|+| ++||+++........... ++ .|.+..-. ..+...|+|.+.+..
T Consensus 15 ~~itW-~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~------~d~g~~ytC~v~h~~ 69 (83)
T cd05884 15 ADIRW-FKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDR------SDDGVAIICRVDHES 69 (83)
T ss_pred CEEEE-EECCEECcCceeeEeeCCCCCEEEEEEEEEEEccc------ccCCCEEEEEEechh
Confidence 57899 999998754211111111 12 24443221 225679999999874
No 193
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.66 E-value=0.007 Score=33.05 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.8
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC-CCceEE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE-AGVILS 61 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~~ 61 (116)
+|.|.+++.+ |+|.|.|..... .|....
T Consensus 62 sL~I~nv~~~------D~G~Y~C~~~~~p~g~~~~ 90 (97)
T cd05846 62 SITIWNVTLE------DEGCYKCIFNTFPDGSKSG 90 (97)
T ss_pred EEEEeCCcee------eeEEEEEEEEeCCCCCeee
Confidence 6999999766 999999997765 455443
No 194
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.62 E-value=0.0028 Score=35.88 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
.|.|.++..+ |+|.|.|.+.|...
T Consensus 80 sL~I~~v~~~------D~G~Y~C~v~~~~~ 103 (115)
T cd05880 80 SILIWQLQPT------DNGTYTCQVKNPPD 103 (115)
T ss_pred EEEEeeCChh------hCEEEEEEEEeCCC
Confidence 6999999766 99999999998754
No 195
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.58 E-value=0.012 Score=30.11 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=24.8
Q ss_pred EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568 3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN 54 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n 54 (116)
+|+| ++ |..+... .+.++-+..+..+ -.|.|.|.+.+
T Consensus 18 si~W-~k-G~~~~~~-------~~~tlnLGs~~~D------PRG~Y~C~~s~ 54 (69)
T cd07691 18 NITW-KK-GKEILEV-------SNTLLDLGSRIND------PRGTYSCKESE 54 (69)
T ss_pred cEEE-ec-Ccccccc-------cccEEeccCcccC------CCcceEecCcc
Confidence 4889 77 5444311 1446667777555 68999999987
No 196
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.57 E-value=0.023 Score=34.93 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=27.4
Q ss_pred eCCeEEecCCCCCCCCCCCCceEEEEEEEcC-CC-ceEE-EEEEEEeC
Q psy11568 25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNE-AG-VILS-RFVHVKAG 69 (116)
Q Consensus 25 ~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g-~~~~-~~~~v~~~ 69 (116)
.+..|.|.+++++ |+|.|.|....- .| .... ..|.|...
T Consensus 83 ~~StItIknVt~s------DeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 83 NESTILIKNVSLK------DNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred CcceEEEEeCChh------hCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 3457999999766 999999987665 45 4443 45666653
No 197
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=96.56 E-value=0.0029 Score=30.72 Aligned_cols=23 Identities=39% Similarity=0.872 Sum_probs=20.2
Q ss_pred CCCcEEEEeeecCcCCceeEEeC
Q psy11568 94 NESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 94 ~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
+|+++.|.|.+.+.|.+.+.|+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~ 23 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLK 23 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEE
Confidence 47899999999999999999973
No 198
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.48 E-value=0.0028 Score=34.86 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.1
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
.|.|.+++.+ |+|.|.|.+.+..+
T Consensus 68 sL~I~~v~~~------D~G~Y~C~v~~~~~ 91 (105)
T cd00099 68 TLTISSLQPE------DSAVYYCAVSLSGG 91 (105)
T ss_pred EEEECCCCHH------HCEEEEEEEecCCC
Confidence 7999999766 99999999998765
No 199
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.42 E-value=0.0046 Score=34.95 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
.|.|.++..+ |+|.|.|...|...
T Consensus 81 sL~I~~v~~~------D~G~Y~C~v~~~~~ 104 (116)
T cd05715 81 SIVIHNLQFT------DNGTYTCDVKNPPD 104 (116)
T ss_pred EEEEeeCCcc------cCEEEEEEEEeCCC
Confidence 6999999766 99999999998754
No 200
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.37 E-value=0.0045 Score=34.36 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.9
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|.|.+++.+ |+|.|.|.+.+..
T Consensus 71 ~L~I~~~~~~------DsG~Y~C~~~~~~ 93 (109)
T cd04983 71 SLHISAAQLS------DSAVYFCALSESG 93 (109)
T ss_pred EEEECCCCHH------HCEEEEEEEecCC
Confidence 6999999766 9999999998764
No 201
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.20 E-value=0.01 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=22.1
Q ss_pred eEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 89 RFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 89 ~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
.....+|+.+.|.|.. +.|.|.++|+
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wy 30 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWL 30 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEE
Confidence 4456789999999996 5899999997
No 202
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.18 E-value=0.057 Score=30.15 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=27.8
Q ss_pred EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568 23 ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66 (116)
Q Consensus 23 ~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v 66 (116)
...+-+|.|..+..+ |+|.|.-..++..|.+....+.|
T Consensus 67 ~~enlaLlIkaAq~q------DSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 67 TSENLALLIKAAQPQ------DSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp ETTTTEEEESS-SGG------G-EEEEEEEEETTSCEEEEEEEE
T ss_pred eccCceEEEeecCcc------cCceEEEEEEcCCCcEEEEEEEE
Confidence 445568999999655 99999999999999887644333
No 203
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=96.15 E-value=0.011 Score=32.44 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.7
Q ss_pred CeEEEeCCCcEEEEee-ecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCA-AQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~-~~g~P~p~i~W~ 115 (116)
....+.+|+.+.|.|. -.|.|.|.++|+
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~ 39 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWL 39 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEE
Confidence 4567888999999995 477899999997
No 204
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.12 E-value=0.076 Score=28.68 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.5
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
..+|.+..+... |+|.++|.....
T Consensus 50 ~ktL~~~qv~~q------dSG~WtC~V~~~ 73 (88)
T cd07694 50 KKTLNLVQLGPN------DSGTWDCIVSVN 73 (88)
T ss_pred ccEEEeceeCcc------cCCEEEEEEEEC
Confidence 347889999665 999999998755
No 205
>smart00409 IG Immunoglobulin.
Probab=96.07 E-value=0.017 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.584 Sum_probs=24.5
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
....+..|+++.|.|.+.+.+.+.+.|+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~ 30 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYK 30 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEE
Confidence 34566789999999999999899999963
No 206
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.07 E-value=0.017 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.584 Sum_probs=24.5
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
....+..|+++.|.|.+.+.+.+.+.|+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~ 30 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYK 30 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEE
Confidence 34566789999999999999899999963
No 207
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=96.03 E-value=0.022 Score=31.34 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.7
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
+|.|.+++.+ |+|.|.|.....
T Consensus 80 sL~i~~l~~~------DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 80 SLTIKNLQPS------DSGTYFCQVSTS 101 (114)
T ss_dssp EEEESSESGG------GEEEEEEEEEES
T ss_pred EEEECCCCcC------cCEEEEEEEEEC
Confidence 5999999766 999999998887
No 208
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=95.96 E-value=0.011 Score=29.95 Aligned_cols=34 Identities=35% Similarity=0.696 Sum_probs=23.5
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcC-CceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSP-TPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~p~i~W~ 115 (116)
|.+...+ .......+. +.|.|.+.+.| .+.++|+
T Consensus 2 P~I~~~~-~~~~~~~~~-~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 2 PQISVPP-PPVVTSGGS-VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp SEEEEES-TSEEETTEE-EEEEEEESSEESSEEEEEE
T ss_pred CEEEEcC-CCcEeecee-EEEEEEEccccCCeEEEEE
Confidence 5555554 333333333 99999999988 8899996
No 209
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=95.79 E-value=0.014 Score=28.97 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=19.2
Q ss_pred CCcEEEEeee-cCcCCceeEEeC
Q psy11568 95 ESGGRLDCAA-QGSPTPKIEWLI 116 (116)
Q Consensus 95 g~~~~l~C~~-~g~P~p~i~W~~ 116 (116)
|+++.|.|.+ .+.|.+.++|++
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~ 23 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSK 23 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEE
Confidence 7889999999 777888999973
No 210
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.78 E-value=0.037 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=23.7
Q ss_pred CeEEEeCCCcEEEEeeecCcC-CceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSP-TPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P-~p~i~W~ 115 (116)
....+.+|+++.|.|.+.+.. ...+.|+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wy 36 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWY 36 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEE
Confidence 667888899999999997765 6789997
No 211
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.76 E-value=0.0093 Score=31.86 Aligned_cols=22 Identities=32% Similarity=0.821 Sum_probs=17.3
Q ss_pred CCcEEEEeee-cCcCCceeEEeC
Q psy11568 95 ESGGRLDCAA-QGSPTPKIEWLI 116 (116)
Q Consensus 95 g~~~~l~C~~-~g~P~p~i~W~~ 116 (116)
|+.+.+.|.+ .|.|.|.|+|++
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~ 36 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYL 36 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEE
Confidence 6799999955 557999999973
No 212
>KOG3515|consensus
Probab=95.74 E-value=0.024 Score=41.75 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=56.5
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCc
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPL 81 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~ 81 (116)
+.+.| ++++.... ..+....+.++......++ ..+.|.|.+.|..+......+..... .+ |.
T Consensus 38 ~~~eW-~h~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~c~a~ns~~~~~~~~~~l~v~-------~~-pa 99 (741)
T KOG3515|consen 38 IDVEW-YHSTSGEH---GRYATIADPTLVTTGDVRD------TVAELNCRAFNSVGMPSRCPMILDVD-------YP-PA 99 (741)
T ss_pred cceEE-EecCcccc---cccccccCCceeeecchhh------hhhhhhhhhcccccCceecceeeccc-------cC-cc
Confidence 46779 66655443 2233455667777776444 78999999999966555432222211 00 32
Q ss_pred eEecCCCeEEEeCCCcEEEEeee--cCcCCceeEEeC
Q psy11568 82 FRIEPPYRFEFSNESGGRLDCAA--QGSPTPKIEWLI 116 (116)
Q Consensus 82 ~~~~~~~~~~~~~g~~~~l~C~~--~g~P~p~i~W~~ 116 (116)
..... .......+..+.+.|.+ .+.|.+.+.|.+
T Consensus 100 ~~~~~-~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~ 135 (741)
T KOG3515|consen 100 CLPEL-GEIFQVDKGVVQIICSAKVAGRPNPNLRWGF 135 (741)
T ss_pred ccccc-cchhhhcCCeEEEEEeecCCCCCCcceeeee
Confidence 22222 33344557888888844 456888999964
No 213
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=95.63 E-value=0.013 Score=32.63 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.6
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|.|.++..+ |+|.|.|.+.+..
T Consensus 73 ~L~I~~~~~~------Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 73 SLTIKSAEPE------DSAVYLCASSLGG 95 (110)
T ss_pred EEEECCCChh------hCEEEEEEeeCCC
Confidence 6999999766 9999999988753
No 214
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.58 E-value=0.011 Score=32.72 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.6
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|.|.++..+ |+|.|.|.+.+.
T Consensus 72 ~L~I~~~~~~------Dsg~Y~Ca~~~~ 93 (106)
T cd04980 72 TLTISRVEPE------DAAVYYCQQYGT 93 (106)
T ss_pred EEEECCCChH------HCEEEEEEEeCC
Confidence 5899999665 999999998764
No 215
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=95.56 E-value=0.026 Score=30.72 Aligned_cols=23 Identities=9% Similarity=0.381 Sum_probs=19.4
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|.|.+++.+ |+|.|.|......
T Consensus 65 ~L~I~~v~~~------DsG~Y~C~~~~~~ 87 (98)
T cd05716 65 TVTLNQLRKE------DAGWYWCGVGDDG 87 (98)
T ss_pred EEEEcCCCHH------HCEEEEEEcccCC
Confidence 6999999766 9999999887754
No 216
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.53 E-value=0.073 Score=27.57 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=25.3
Q ss_pred EEEEEccCCeeeeccccc-eEE-eeCCe------EEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 3 VLLWLIRDNTVIAYVKDL-RIA-LSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~-~~~-~~~~~------l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|+| ++||+++...... ... ..+++ |.+.... ..+...|+|.+.+..
T Consensus 17 ~v~W-~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~------~~~~~~~tC~V~H~~ 71 (75)
T smart00407 17 TVTW-LRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSAST------WESGDTYTCQVTHEG 71 (75)
T ss_pred EEEE-EECCEECCCCEEECceEECCCCCEEEEEEEEEcccc------CCCCCEEEEEEEEcC
Confidence 6899 8899875421111 111 12332 3333222 226689999987753
No 217
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.51 E-value=0.018 Score=31.43 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=18.5
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|.|.++..+ |+|.|.|.+.+.
T Consensus 64 ~L~I~~~~~~------Dsg~Y~C~~~~~ 85 (98)
T cd04984 64 SLTISGAQTE------DEADYYCQVWDS 85 (98)
T ss_pred EEEECCCChh------hCEEEEEEEccC
Confidence 5899999665 999999998754
No 218
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.33 E-value=0.011 Score=30.62 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.7
Q ss_pred eEEecCCCCCCCCCCCCceEEEEE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCR 51 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~ 51 (116)
.|.|.+++.+ |+|.|.|.
T Consensus 63 ~L~i~~~~~~------D~G~Y~C~ 80 (81)
T smart00406 63 SLTISNLRVE------DTGTYYCA 80 (81)
T ss_pred EEEEcCCCHH------HCEEEEEc
Confidence 5999999766 99999996
No 219
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=95.27 E-value=0.049 Score=28.86 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.1
Q ss_pred EEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568 90 FEFSNESGGRLDCAAQG-SPTPKIEWL 115 (116)
Q Consensus 90 ~~~~~g~~~~l~C~~~g-~P~p~i~W~ 115 (116)
..+.+|+++.|.|.+.+ .|.+.+.|+
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~ 35 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYY 35 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEE
Confidence 36778999999999854 567788996
No 220
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.07 E-value=0.049 Score=29.63 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=17.3
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.+.|..++.+ |+|.|+|.....
T Consensus 56 ~f~I~~~~~~------~~G~Y~C~~~~~ 77 (94)
T cd05711 56 SFPLGPVTPA------HAGTYRCYGSYN 77 (94)
T ss_pred EEEecCCCcc------cCEEEEEEEECC
Confidence 5688888655 999999997643
No 221
>KOG1480|consensus
Probab=94.98 E-value=0.012 Score=43.19 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=37.0
Q ss_pred EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
.+.| ++++..+.. ..+.+......+.+..++. .|.|+|+|++.|..+...+
T Consensus 161 e~~w-~k~e~~~~p-d~n~~~~~d~~li~~~arl------sd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 161 EVEW-LKNEVVIDP-DANVIRASDHNLIISQARL------SDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred hhhc-cccCCCCCc-cccchhhhcCCccccchhh------hhcccceeeeehhhccccc
Confidence 3579 888877764 2223445566788888854 4999999999999877664
No 222
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=94.88 E-value=0.065 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.2
Q ss_pred EEEeCCCcEEEEeeecC-cCCce--eEEe
Q psy11568 90 FEFSNESGGRLDCAAQG-SPTPK--IEWL 115 (116)
Q Consensus 90 ~~~~~g~~~~l~C~~~g-~P~p~--i~W~ 115 (116)
..+.+|+.+.|.|.+.| .|.+. |+|+
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~ 39 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLL 39 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEe
Confidence 34578999999999977 57776 6897
No 223
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=94.86 E-value=0.081 Score=28.88 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=25.5
Q ss_pred EEEEEccCCeeeeccccceEE--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 3 VLLWLIRDNTVIAYVKDLRIA--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|+| ++||+++.. ...... ..+++..+.....- ...+...|.|.+...
T Consensus 33 ~v~W-~~dg~~~~~-~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~ 82 (93)
T cd05770 33 EIRL-LKNGVKIPK-VEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHN 82 (93)
T ss_pred EEEE-EECCEECCC-cEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEEC
Confidence 5799 999998762 111111 22334333111000 123677899998875
No 224
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.74 E-value=0.027 Score=31.64 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.5
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|.|.++..+ |+|.|.|.+...
T Consensus 78 ~L~I~~~~~~------Dsg~Y~C~~~~~ 99 (116)
T cd04982 78 TLTIQNLEKE------DSATYYCAYWES 99 (116)
T ss_pred EEEEEECCHH------HCEEEEEEEecC
Confidence 6999999766 999999998653
No 225
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=94.67 E-value=0.092 Score=28.77 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=23.6
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
++..+.+|+++.|.|.+.+.....+.|+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~ 32 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLL 32 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEE
Confidence 5678889999999999999876667774
No 226
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=94.64 E-value=0.11 Score=28.81 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=26.6
Q ss_pred EEEEccCCeeeeccccce----EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568 4 LLWLIRDNTVIAYVKDLR----IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV 58 (116)
Q Consensus 4 v~W~~~~g~~~~~~~~~~----~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~ 58 (116)
|+| +++++.+....... ......++.+. +.++ .|.-.|+|.|.+..+.
T Consensus 36 i~W-~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~-----D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 36 VVL-LRGNETLSRQPFGDNTKSPVNAPATITIT-VDRE-----DHGANFSCETELDLRP 87 (100)
T ss_pred EEE-eeCCEEcccceeccccCCCceeEEEEEEe-cchh-----hCCcEEEEEEEeccCc
Confidence 799 88888885311100 01111234443 3333 2555999999998643
No 227
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=94.63 E-value=0.054 Score=29.06 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=23.5
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~ 116 (116)
+...+..|+.+.|.|...+. .+.+.|++
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ 31 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLF 31 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEE
Confidence 56778899999999998775 67999975
No 228
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.41 E-value=0.033 Score=30.85 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.9
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASN 54 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n 54 (116)
.|.|.++..+ |+|+|.|...+
T Consensus 70 ~L~I~~~~~s------DsgtY~Ca~~~ 90 (104)
T cd05720 70 VLTLKNFQKE------NEGYYFCSVAS 90 (104)
T ss_pred EEEECCCCHH------HCEEEEEEEcc
Confidence 5999999766 99999998764
No 229
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.35 E-value=0.071 Score=29.60 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.1
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|.|.++..+ |+|.|.|...+.
T Consensus 73 ~L~I~~~~~~------Dsg~YyCa~~~~ 94 (107)
T cd07700 73 RLHINRVKPE------DSGTYFCMTVGS 94 (107)
T ss_pred EEEECCCCHH------HCEEEEEeEcCC
Confidence 4999999666 999999997643
No 230
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=94.28 E-value=0.13 Score=28.00 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=25.2
Q ss_pred EEEEEccCCeeeecc-ccce-EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 3 VLLWLIRDNTVIAYV-KDLR-IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~-~~~~-~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|+| ++||+++... .... ....+++..+.....- ...+...|.|.+....
T Consensus 32 ~v~W-~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 32 TVKW-FKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred EEEE-EECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 5799 9999987642 1111 1112233222111100 1225668999988764
No 231
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.25 E-value=0.041 Score=30.95 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.7
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|.|.++..+ |+|.|.|.....
T Consensus 73 sL~I~~~~~~------Dsg~Y~C~~~~~ 94 (116)
T cd07706 73 SLTISALQLE------DSAKYFCALSTL 94 (116)
T ss_pred EEEECCCCHH------HCEEEEEEEECC
Confidence 6999999766 999999998853
No 232
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.13 E-value=0.097 Score=26.61 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=22.4
Q ss_pred EEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 4 v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
|.| .+|+..+.. .+..+.+.+-. + ++|.|.|.+.+..
T Consensus 21 i~W-~~n~~~~~g--------~~~~~~~~~~~-e------~~G~Y~C~~~~~~ 57 (65)
T cd07692 21 IKW-KKNDQVSQG--------SDEKYLSLNHF-S------SSGYYHCTADNAN 57 (65)
T ss_pred ceE-EeCCccCCC--------CCceEEeeccC-C------CCceEEEEeCCCc
Confidence 778 777644431 12233344443 3 8999999997653
No 233
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=94.13 E-value=0.11 Score=28.44 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=24.9
Q ss_pred EEEEEccCCeeeecccc-ceEE-eeCCeEEe-cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 3 VLLWLIRDNTVIAYVKD-LRIA-LSNGSLMF-PPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~-~~~~-~~~~~l~i-~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|+| ++||+++..... .... ..+++..+ ..+.. .+.+...|+|.+....
T Consensus 33 ~v~W-~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v----~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 33 NVTW-LKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF----TPEEGDIYSCIVEHWG 84 (94)
T ss_pred EEEE-EECCeEccCceEEeeeEeCCCCcEEEEEEEEE----ECCCCCeEEEEEEeCC
Confidence 5799 899998753211 1111 12233222 11111 1225679999988753
No 234
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=94.08 E-value=0.071 Score=30.23 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.5
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|.|.++..+ |+|.|.|.....
T Consensus 81 sL~I~~l~~~------Dsg~Y~C~~~~~ 102 (119)
T cd05712 81 SLLISDAQPE------DSGKYFFRVELG 102 (119)
T ss_pred EEEEccCChh------hCeEEEEEEEcC
Confidence 5999999665 999999987664
No 235
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=93.83 E-value=0.34 Score=25.66 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=11.0
Q ss_pred CceEEEEEEEcCC
Q psy11568 44 HSTVYRCRASNEA 56 (116)
Q Consensus 44 d~G~y~C~a~n~~ 56 (116)
+...++|.+.+..
T Consensus 72 ~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 72 HGKTLTCRASHPA 84 (89)
T ss_dssp TTEEEEEEEEETT
T ss_pred CCeEEEEEEECCc
Confidence 6779999999875
No 236
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=93.38 E-value=0.27 Score=27.12 Aligned_cols=27 Identities=26% Similarity=0.690 Sum_probs=19.8
Q ss_pred eEEEeCCCcEEE-Eeee-cCcCCceeEEe
Q psy11568 89 RFEFSNESGGRL-DCAA-QGSPTPKIEWL 115 (116)
Q Consensus 89 ~~~~~~g~~~~l-~C~~-~g~P~p~i~W~ 115 (116)
...+.+|+.+.+ .|.+ .|.|.+.|+|+
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~ 38 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWE 38 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEe
Confidence 344556777777 6755 66899999997
No 237
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=93.29 E-value=0.27 Score=26.55 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=10.9
Q ss_pred CceEEEEEEEcCC
Q psy11568 44 HSTVYRCRASNEA 56 (116)
Q Consensus 44 d~G~y~C~a~n~~ 56 (116)
+.+.|+|.+.+..
T Consensus 71 ~~~~ytC~V~H~~ 83 (93)
T cd07698 71 DKARYSCRVEHSG 83 (93)
T ss_pred CCCEEEEEEEeCC
Confidence 7889999998764
No 238
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=93.28 E-value=0.26 Score=27.76 Aligned_cols=13 Identities=8% Similarity=0.572 Sum_probs=10.9
Q ss_pred EEEEEccCCeeeec
Q psy11568 3 VLLWLIRDNTVIAY 16 (116)
Q Consensus 3 ~v~W~~~~g~~~~~ 16 (116)
.|+| ++||+++..
T Consensus 39 ~v~W-~kng~~~~~ 51 (111)
T cd05772 39 TVKW-LKNGNELSA 51 (111)
T ss_pred EEEE-EECCEECcc
Confidence 6899 999999864
No 239
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=92.88 E-value=0.35 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=25.3
Q ss_pred CeEEEeCCCcEEEEeeecCcCCce-eEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPK-IEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~-i~W~ 115 (116)
....+..|+.+.|.|.+..-|+|. +.|.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~ 39 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWI 39 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEE
Confidence 567788999999999999999997 9996
No 240
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=92.80 E-value=0.28 Score=26.49 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=20.5
Q ss_pred EEEeCCCcEEEEeeecCcC--CceeEEe
Q psy11568 90 FEFSNESGGRLDCAAQGSP--TPKIEWL 115 (116)
Q Consensus 90 ~~~~~g~~~~l~C~~~g~P--~p~i~W~ 115 (116)
..+..|+++.|.|.....+ .+.+.|+
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~ 36 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWR 36 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEe
Confidence 3567799999999996644 4599996
No 241
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=92.20 E-value=0.23 Score=26.59 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=19.2
Q ss_pred eCCCcEEEEeeecCc-C-CceeEEe
Q psy11568 93 SNESGGRLDCAAQGS-P-TPKIEWL 115 (116)
Q Consensus 93 ~~g~~~~l~C~~~g~-P-~p~i~W~ 115 (116)
..|+.+.|.|.+.|. | .+.++|+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~ 35 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWL 35 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEE
Confidence 358999999999997 6 3689997
No 242
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=92.13 E-value=0.24 Score=26.07 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=25.4
Q ss_pred EEEEEccCCeeeeccccce-EE-eeCCe------EEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 3 VLLWLIRDNTVIAYVKDLR-IA-LSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~-~~-~~~~~------l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|+| ++||+.+....... .. ..+++ |.+. .. +...|.|.+....
T Consensus 26 ~v~W-~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~------~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 26 TVTW-LKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WN------SGDEYSCRVTHES 77 (83)
T ss_dssp EEEE-EETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TT------TTGGEEEEEEETT
T ss_pred EEEE-EeccceeeeeeeecccccccccceeeeEEEEec---CC------CCCEEEEEEEECC
Confidence 6899 99999876422111 11 13342 3333 22 5568999988764
No 243
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=92.03 E-value=0.19 Score=27.68 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=25.4
Q ss_pred EEEEEccCCeeeecccc-ce-EEeeCCeEEecC---CCCCCCCCCCCceEEEEEEEcCC
Q psy11568 3 VLLWLIRDNTVIAYVKD-LR-IALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~-~~-~~~~~~~l~i~~---v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.|+| ++||+++..... .. ....+++..+.. +..+ ...+...|+|.+....
T Consensus 35 ~v~W-~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~---~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 35 TVQW-KVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKS---DWNKHKVYTCEVTHEG 89 (100)
T ss_pred EEEE-EECCEECcccEeccccEECCCCCEEEEEEEEEcHH---HhCCCCeEEEEEEecC
Confidence 6899 999998753111 11 111234332211 1111 0113579999988764
No 244
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=91.93 E-value=0.15 Score=28.87 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.9
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASN 54 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n 54 (116)
.|.|.++..+ |+|.|.|....
T Consensus 77 ~L~I~~~~~~------Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPE------DTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHH------HCEEEEEEEEc
Confidence 5899999766 99999998765
No 245
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=91.59 E-value=0.23 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.605 Sum_probs=21.3
Q ss_pred eEEEeCCCcEEEEeeecC-----cCCceeEEe
Q psy11568 89 RFEFSNESGGRLDCAAQG-----SPTPKIEWL 115 (116)
Q Consensus 89 ~~~~~~g~~~~l~C~~~g-----~P~p~i~W~ 115 (116)
...+..|+++.|.|...+ +|.|.+.|+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wy 35 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWY 35 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEe
Confidence 355677999999998754 268899997
No 246
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=91.31 E-value=0.3 Score=26.79 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=10.3
Q ss_pred EEEEEccCCeeeec
Q psy11568 3 VLLWLIRDNTVIAY 16 (116)
Q Consensus 3 ~v~W~~~~g~~~~~ 16 (116)
.|+| ++||+.+..
T Consensus 34 ~v~W-~kng~~~~~ 46 (96)
T cd07697 34 QVHW-REGNSPSIL 46 (96)
T ss_pred EEEE-EECCEECcC
Confidence 5799 999998753
No 247
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=90.81 E-value=0.37 Score=26.35 Aligned_cols=21 Identities=29% Similarity=0.639 Sum_probs=16.9
Q ss_pred CCcEEEEeee-cCcCCceeEEe
Q psy11568 95 ESGGRLDCAA-QGSPTPKIEWL 115 (116)
Q Consensus 95 g~~~~l~C~~-~g~P~p~i~W~ 115 (116)
.....+.|.+ .|+|.+.|+|+
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~ 36 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWE 36 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEE
Confidence 3456778988 67899999997
No 248
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=90.73 E-value=0.84 Score=24.86 Aligned_cols=13 Identities=15% Similarity=0.695 Sum_probs=10.2
Q ss_pred CceEEEEEEEcCC
Q psy11568 44 HSTVYRCRASNEA 56 (116)
Q Consensus 44 d~G~y~C~a~n~~ 56 (116)
+...|.|.+....
T Consensus 74 ~~~~ytC~V~H~~ 86 (94)
T cd05847 74 SGKTYTCKVTHQG 86 (94)
T ss_pred CCCeEEEEEEECC
Confidence 4579999998864
No 249
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=90.17 E-value=0.73 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=22.7
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.+...| ...+..|+++.|.|... .+...+.|+
T Consensus 3 P~L~a~p--~~vV~~G~~VtL~C~~~-~~~~~f~l~ 35 (91)
T cd05751 3 PSLWAEP--SSVVPLGKPVTLRCQGP-YGAVEYRLY 35 (91)
T ss_pred CEEEecC--CCccCCCCcEEEEEecC-CCCCEEEEE
Confidence 5555554 24667899999999875 555566664
No 250
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=89.93 E-value=0.44 Score=26.09 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=16.2
Q ss_pred CcEEEEeeec-CcCCceeEEe
Q psy11568 96 SGGRLDCAAQ-GSPTPKIEWL 115 (116)
Q Consensus 96 ~~~~l~C~~~-g~P~p~i~W~ 115 (116)
....+.|.+. |+|.+.|+|+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~ 36 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWS 36 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEE
Confidence 4567889765 7899999997
No 251
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=89.89 E-value=0.51 Score=27.48 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=14.5
Q ss_pred ceEEEEEEEcCCCceEE-EEEEE
Q psy11568 45 STVYRCRASNEAGVILS-RFVHV 66 (116)
Q Consensus 45 ~G~y~C~a~n~~g~~~~-~~~~v 66 (116)
.|.|+|.+......... ..|..
T Consensus 97 ~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 97 EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp -EEEEEEEEETTEEEEEEEEEEE
T ss_pred ccceEEEEEecCCCceEEEEEEE
Confidence 69999999988754443 33433
No 252
>PHA02982 hypothetical protein; Provisional
Probab=89.19 E-value=4.1 Score=25.92 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~ 60 (116)
.++|+|.++..+ ..|-|+|.+....+...
T Consensus 99 ~STLTIkk~~i~------N~GCYtc~~ks~~~k~E 127 (251)
T PHA02982 99 SSTFTMKKPDPQ------NLGCFTCEAKDAEGKEE 127 (251)
T ss_pred ceeEEeccCCcc------cCCceEEEEecCCCchh
Confidence 458999999765 89999999999776554
No 253
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=87.03 E-value=1.6 Score=23.55 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=20.6
Q ss_pred CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
|.+...+ ...+..|++++|.|.... +.-.+.|+
T Consensus 2 P~l~a~p--~~vV~~G~~VTL~C~~~~-~~~~f~l~ 34 (94)
T cd05711 2 PFLSAHP--SPVVPSGENVTLQCHSDI-RFDRFILY 34 (94)
T ss_pred CEEEecC--CCccCCCCeEEEEEecCC-CCCEEEEE
Confidence 4444433 456678999999997654 33345554
No 254
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=86.48 E-value=1.7 Score=26.95 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=23.4
Q ss_pred CeEEEeCCCcEEEEeeec-CcCCceeEEeC
Q psy11568 88 YRFEFSNESGGRLDCAAQ-GSPTPKIEWLI 116 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~-g~P~p~i~W~~ 116 (116)
....+.+|+++.|.|... +...+.++|+.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK 52 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKK 52 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEE
Confidence 456778899999999984 66688999973
No 255
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=86.08 E-value=0.69 Score=25.57 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=16.7
Q ss_pred CCCcEEEEeeecCc-CCc-eeEEe
Q psy11568 94 NESGGRLDCAAQGS-PTP-KIEWL 115 (116)
Q Consensus 94 ~g~~~~l~C~~~g~-P~p-~i~W~ 115 (116)
.++.+.|.|.+.|- |.. .++|+
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~ 38 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWL 38 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEE
Confidence 36889999999995 433 55896
No 256
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=85.17 E-value=0.73 Score=25.15 Aligned_cols=10 Identities=10% Similarity=0.415 Sum_probs=8.6
Q ss_pred EEEEEccCCee
Q psy11568 3 VLLWLIRDNTV 13 (116)
Q Consensus 3 ~v~W~~~~g~~ 13 (116)
.|+| ++||++
T Consensus 34 ~vtW-~k~g~~ 43 (95)
T cd04985 34 TFTW-NSGSNS 43 (95)
T ss_pred EEEE-eECCEE
Confidence 5789 999997
No 257
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=83.46 E-value=1.8 Score=23.31 Aligned_cols=21 Identities=33% Similarity=0.784 Sum_probs=17.3
Q ss_pred CCcEEEEeeecCc-CCc-eeEEe
Q psy11568 95 ESGGRLDCAAQGS-PTP-KIEWL 115 (116)
Q Consensus 95 g~~~~l~C~~~g~-P~p-~i~W~ 115 (116)
++.+.|.|.+.|- |.+ .++|+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~ 36 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWL 36 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEE
Confidence 6789999999995 554 78896
No 258
>PHA03042 CD47-like protein; Provisional
Probab=83.04 E-value=3.1 Score=27.42 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=24.4
Q ss_pred EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568 3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g 57 (116)
.|.| +.|++.+....+. ...+|.+..- ..-.|+|+|.+.+...
T Consensus 52 ~V~W-kf~~~~If~~n~t----n~aSL~~~f~-------~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 52 HINW-KFNNKVIFKKNNT----NTSSLKFNFS-------KNLSGNYTCEAINKFN 94 (286)
T ss_pred EEEE-EeCCeeEEEecCC----cceEEEEecc-------ccCCCceeEEEeeccc
Confidence 4788 7777766431110 1123444322 2257999999988654
No 259
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=82.83 E-value=1.7 Score=23.96 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=15.9
Q ss_pred CcEEEEee-ecCcCCceeEEe
Q psy11568 96 SGGRLDCA-AQGSPTPKIEWL 115 (116)
Q Consensus 96 ~~~~l~C~-~~g~P~p~i~W~ 115 (116)
..+.-.|. +.|+|++.|+|.
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~ 41 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWD 41 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEE
Confidence 44566797 788999999995
No 260
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=81.62 E-value=6 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=16.0
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEE-EcCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRA-SNEA 56 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a-~n~~ 56 (116)
.........+ |+|.+.|.| .+..
T Consensus 44 ~~~~~~~~~~------d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 44 LVSTFTPTTE------DSGTWVCTASDNEP 67 (80)
T ss_dssp EEEEESBTCG------GSEEEEEEEEECTT
T ss_pred EEEEecCCCC------CCEEEEEEEcCCce
Confidence 4555666444 999999999 4444
No 261
>PHA03189 UL14 tegument protein; Provisional
Probab=80.45 E-value=5.2 Score=26.89 Aligned_cols=23 Identities=43% Similarity=0.834 Sum_probs=15.9
Q ss_pred CceEEEEEEEcCC-CceEEEEEEE
Q psy11568 44 HSTVYRCRASNEA-GVILSRFVHV 66 (116)
Q Consensus 44 d~G~y~C~a~n~~-g~~~~~~~~v 66 (116)
.+|.|.|...|.. |.+....+.|
T Consensus 144 taG~Y~CvLrN~tHglv~~rf~iv 167 (348)
T PHA03189 144 TAGMYECVLRNETHGLVLQRFVIV 167 (348)
T ss_pred ccceEEEEeccccceeeeEEeeee
Confidence 7899999999984 5444433333
No 262
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=79.19 E-value=1.7 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.446 Sum_probs=18.0
Q ss_pred EeCCCcEEEEeeecCc--CCc-eeEEe
Q psy11568 92 FSNESGGRLDCAAQGS--PTP-KIEWL 115 (116)
Q Consensus 92 ~~~g~~~~l~C~~~g~--P~p-~i~W~ 115 (116)
+..++.+.|.|.+.|- |.. .++|+
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~ 37 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWT 37 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEE
Confidence 3457999999999998 432 56886
No 263
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=74.01 E-value=16 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=21.7
Q ss_pred eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 24 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 24 ~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
+.+++|+|.++... ..|-|.|++....
T Consensus 343 lk~STLTIkka~I~------N~GCY~~~a~~g~ 369 (500)
T PHA02914 343 LKNSTLTIKKAHIN------NAGCYEAQAFMGK 369 (500)
T ss_pred hhhceEEeeeEEEE------cCCceEEEEecCc
Confidence 34558999999665 8999999998874
No 264
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=73.79 E-value=4.9 Score=22.24 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=17.8
Q ss_pred EeCCCcEEEEeeecC-c-CC-ceeEEe
Q psy11568 92 FSNESGGRLDCAAQG-S-PT-PKIEWL 115 (116)
Q Consensus 92 ~~~g~~~~l~C~~~g-~-P~-p~i~W~ 115 (116)
...++.+.|.|.+.+ . |. -.++|.
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~ 42 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWT 42 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEE
Confidence 345789999999999 3 53 367886
No 265
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=71.55 E-value=4.4 Score=23.01 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=17.0
Q ss_pred CCCcEEEEeeecCc-CCc-eeEEe
Q psy11568 94 NESGGRLDCAAQGS-PTP-KIEWL 115 (116)
Q Consensus 94 ~g~~~~l~C~~~g~-P~p-~i~W~ 115 (116)
.+..+.|.|.+.|- |.. .++|+
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~ 40 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWK 40 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEE
Confidence 46789999999995 543 77896
No 266
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=70.84 E-value=6.8 Score=20.00 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=22.1
Q ss_pred EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
.++| +-||..+. ++...++.+.++ .++|+|......
T Consensus 12 Pisw-YcN~TRLl-------Rlt~~Tlt~~~l----------tcNFtCV~qSGh 47 (71)
T PF11049_consen 12 PISW-YCNGTRLL-------RLTQQTLTVVTL----------TCNFTCVGQSGH 47 (71)
T ss_pred cccE-EECCceee-------eecCCeEeeeee----------eEEeeecCCCCC
Confidence 3678 66655443 233446666555 789999876654
No 267
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=70.27 E-value=8.2 Score=21.44 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=17.3
Q ss_pred eCCCcEEEEeeecCc-CC--ceeEEe
Q psy11568 93 SNESGGRLDCAAQGS-PT--PKIEWL 115 (116)
Q Consensus 93 ~~g~~~~l~C~~~g~-P~--p~i~W~ 115 (116)
.+|+.+.+.|.+.+. |. ..+.|+
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~v~Ll 38 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLEIELL 38 (99)
T ss_pred cCCceEEEEEEecCcccCCceEEEEe
Confidence 679999999999763 54 456774
No 268
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=69.68 E-value=5.7 Score=22.69 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=18.2
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
.|.|.+++.+ |.+.|.|....-
T Consensus 75 ~L~l~~L~a~------DTa~Y~Ca~e~m 96 (115)
T cd05721 75 NFTLQNLRAN------QTDIYFCKIELM 96 (115)
T ss_pred EEEEcCCCHH------HCeEEEEEeeec
Confidence 5899999766 999999987544
No 269
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=66.70 E-value=6.5 Score=27.87 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=14.0
Q ss_pred eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeecc---------CCCceEecCCCeEEEe
Q psy11568 25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDI---------QGPLFRIEPPYRFEFS 93 (116)
Q Consensus 25 ~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~---------~~p~~~~~~~~~~~~~ 93 (116)
..+.|.|.+++.+ |+|.|+=...+..+.... +.|.|........... ....+...........
T Consensus 87 ~~~~l~i~~a~~~------~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~ 160 (439)
T PF02480_consen 87 NKGGLSILNATEQ------DSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFS 160 (439)
T ss_dssp -----------------------------------------------------------------SEEEEEE--SEEE--
T ss_pred cCCceEEeccccc------cCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEec
Confidence 3457999999655 999999998877765553 3344432111100000 0012223333555666
Q ss_pred CCCcEEEEeeecCcC------CceeEEeC
Q psy11568 94 NESGGRLDCAAQGSP------TPKIEWLI 116 (116)
Q Consensus 94 ~g~~~~l~C~~~g~P------~p~i~W~~ 116 (116)
.|+++.+.-...... ...|.|++
T Consensus 161 ~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 161 PGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred CCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 788887766554432 23566763
No 270
>PHA03052 Hypothetical protein; Provisional
Probab=66.69 E-value=16 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=19.4
Q ss_pred CeEEEeCCCcEEEEeeecC-cC--CceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQG-SP--TPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g-~P--~p~i~W~ 115 (116)
....+..|+++.+.|.+.= .| .+.+.|.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~ 35 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWI 35 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEE
Confidence 4566777999999998843 33 4456674
No 271
>PHA03269 envelope glycoprotein C; Provisional
Probab=66.32 E-value=48 Score=24.14 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=43.7
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC-CCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE-AGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~ 105 (116)
.|.|.++... ++|.|.=...+. .+... ...+.|..- ..|.+...+. .+..|++..-.|.+.
T Consensus 290 pL~I~sltaA------TeGvY~Wrv~~~~n~t~~~~~~VtV~~y--------r~PsVsV~p~---PVL~Ge~YkAtC~vA 352 (566)
T PHA03269 290 SLHILSLDAS------TEGTYIWRVIHTANKNVINEHHITVMSY--------KRPNITVIGD---PVLLGNPYAAYCKVN 352 (566)
T ss_pred ceEEeecccc------cCceEEEEEecCCCCceeeeeEEEEEEe--------cCCCccccCC---ccccCCCceEEEEee
Confidence 4888999665 999998665433 22222 333444431 0265544442 346799999999987
Q ss_pred Cc-C--CceeEEe
Q psy11568 106 GS-P--TPKIEWL 115 (116)
Q Consensus 106 g~-P--~p~i~W~ 115 (116)
.- | +-.++|+
T Consensus 353 ~YYPp~SvrlrWf 365 (566)
T PHA03269 353 KYYPPHSVIVKWT 365 (566)
T ss_pred eecCCCceEEEEE
Confidence 75 3 3367897
No 272
>PHA03273 envelope glycoprotein C; Provisional
Probab=65.57 E-value=48 Score=23.87 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=44.6
Q ss_pred EEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc
Q psy11568 29 LMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS 107 (116)
Q Consensus 29 l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~ 107 (116)
|.|..+... ++|.|.=...+..+... ...+.|..- ..|.+...++ .+..|+...-.|.+..-
T Consensus 200 LtI~sltaa------TeGvYtWr~~~~n~t~~~~~~VtV~~y--------r~Psvsv~~~---PvL~Ge~y~A~C~aa~Y 262 (486)
T PHA03273 200 LTIKSVDWR------TAGVYVWSLYAKNGTLVNSTSVTVSTY--------NAPLVDLSVH---PSLKGENYRAVCVVASY 262 (486)
T ss_pred eEEEecchh------hceEEEEEEecCCCceeeeeEEEEEEe--------cCCcccccCC---ccccCCCceEEEEeeee
Confidence 888888665 89999855445544333 344555431 1266555542 34679999999998775
Q ss_pred -C--CceeEEe
Q psy11568 108 -P--TPKIEWL 115 (116)
Q Consensus 108 -P--~p~i~W~ 115 (116)
| ...+.|+
T Consensus 263 YPp~Sv~~rWf 273 (486)
T PHA03273 263 FPHSSVKLRWY 273 (486)
T ss_pred cCCCceEEEEE
Confidence 3 3367887
No 273
>KOG4597|consensus
Probab=59.89 E-value=5.4 Score=28.52 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=25.0
Q ss_pred CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 88 YRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
....+..+++..+.|.+.|+|.+.++|.
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~ 231 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCE 231 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeee
Confidence 5566788999999999999999999995
No 274
>PHA03270 envelope glycoprotein C; Provisional
Probab=59.71 E-value=62 Score=23.17 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=46.1
Q ss_pred EEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc
Q psy11568 29 LMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS 107 (116)
Q Consensus 29 l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~ 107 (116)
|.|..+... .+|.|+=...+..+... ...+.|..- ..|.+...+. .+..|++..-.|.+...
T Consensus 184 L~I~slt~a------TeGvY~Wr~~~~~~~~~~~~~VtV~~y--------r~Psvsv~~~---PvL~Ge~Y~AtC~va~Y 246 (466)
T PHA03270 184 LVIQELTLA------TQGMYYWARGPADRPHRYGTWTRVRMF--------RRPSLSIRPH---AVLEGEPFGATCVAANY 246 (466)
T ss_pred EEEEEcccc------cceEEEEEEecCCCceeeeeEEEEEEe--------cCCcccccCC---ccccCCCceEEEEeeee
Confidence 888888665 89999998777654333 333555431 1266555542 34579999999998765
Q ss_pred -C--CceeEEe
Q psy11568 108 -P--TPKIEWL 115 (116)
Q Consensus 108 -P--~p~i~W~ 115 (116)
| .-.+.||
T Consensus 247 YPp~Sv~lrWf 257 (466)
T PHA03270 247 YPGDRAAFRWF 257 (466)
T ss_pred cCCCceEEEEE
Confidence 3 3367887
No 275
>PHA03282 envelope glycoprotein E; Provisional
Probab=58.40 E-value=12 Score=26.89 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=24.3
Q ss_pred cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 19 DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 19 ~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
..|+...|++|.|.+++.+ |+|.|+-.....
T Consensus 116 ~~rvs~~n~tl~l~~a~~~------DsG~Y~L~~~~~ 146 (540)
T PHA03282 116 PPRVAVVNGTLVLREARET------DSGMYVLSVSRA 146 (540)
T ss_pred CcceeEecceEEEeecccc------CCceEEEEecCC
Confidence 3466677889999999766 999999986443
No 276
>PHA03283 envelope glycoprotein E; Provisional
Probab=46.93 E-value=1.2e+02 Score=22.46 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=26.0
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA 68 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~ 68 (116)
+.|.|.+.+.+ ++|.|.=..++..+...+ +.|.|..
T Consensus 134 ~~l~I~~at~~------~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPN------IAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccc------cCeEEEEEecCCCceEEEEEEEEecC
Confidence 46889999655 999999999988764443 4455543
No 277
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=46.07 E-value=92 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=15.5
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNE 55 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~ 55 (116)
...+.+++.. |+|.|+|.---.
T Consensus 82 sf~~~Nvs~s------dEGrYrCIFYLn 103 (500)
T PHA02914 82 SFIEENIGEH------EDGDFKCIFYLG 103 (500)
T ss_pred EEEecCcccc------cCCcEEEEEEeC
Confidence 3566777544 999999985444
No 278
>PF15096 G6B: G6B family
Probab=43.75 E-value=21 Score=22.35 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=11.7
Q ss_pred CCCceEEEEEEEcCC
Q psy11568 42 DVHSTVYRCRASNEA 56 (116)
Q Consensus 42 ~~d~G~y~C~a~n~~ 56 (116)
..|+|+|.|......
T Consensus 83 ~GDSGTFfCkGr~e~ 97 (224)
T PF15096_consen 83 AGDSGTFFCKGRQEE 97 (224)
T ss_pred cCCccceEecCcccc
Confidence 359999999976654
No 279
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=36.87 E-value=72 Score=17.19 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=17.7
Q ss_pred EEEeCCCcEEEEeeecCc-----CCceeEEeC
Q psy11568 90 FEFSNESGGRLDCAAQGS-----PTPKIEWLI 116 (116)
Q Consensus 90 ~~~~~g~~~~l~C~~~g~-----P~p~i~W~~ 116 (116)
..+..|+++...|...-. ....|.|.+
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl 44 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKL 44 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEEC
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEE
Confidence 355679999999987532 456778864
No 280
>COG3738 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.36 E-value=36 Score=20.96 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=16.9
Q ss_pred EEEEEccCCeeeeccccceEEeeCCeEEecCCCC
Q psy11568 3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPE 36 (116)
Q Consensus 3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~ 36 (116)
.++|++.||.+....-..+...++..|.+.|+..
T Consensus 146 IvsWRLdngl~HiGv~sd~~~~~g~plViHNIGa 179 (200)
T COG3738 146 IVSWRLDNGLAHIGVVSDGFTRDGTPLVIHNIGA 179 (200)
T ss_pred eEEEEcCCCCceeEEEecCCCCCCCeEEEeecCC
Confidence 3678777765433211111223344577777743
No 281
>COG5475 Uncharacterized small protein [Function unknown]
Probab=34.76 E-value=63 Score=15.94 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=19.0
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
..++.... ..|.|.|..-+.+|...+
T Consensus 19 ~Mtvs~~s--------s~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 19 RMTVSGYS--------SDGMYECRWFDGYGVKRE 44 (60)
T ss_pred eEEEeccc--------cCCeEEEEEecCCCcccc
Confidence 56666663 349999999999885553
No 282
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=32.07 E-value=84 Score=16.55 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=25.7
Q ss_pred cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61 (116)
Q Consensus 2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~ 61 (116)
+.+.| +-||+.+..... ...+.+..- ..|.|+-.+....|...+
T Consensus 43 ~~~~W-~vdg~~~g~~~~------~~~~~~~~~---------~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 43 GPVYW-FVDGEPLGTTQP------GHQLFWQPD---------RPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred CcEEE-EECCEEcccCCC------CCeEEeCCC---------CCeeEEEEEEcCCCCEEE
Confidence 35788 888887732111 122333221 578888888777776554
No 283
>PHA02935 Hypothetical protein; Provisional
Probab=31.87 E-value=1.3e+02 Score=19.20 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=20.1
Q ss_pred EEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568 29 LMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66 (116)
Q Consensus 29 l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v 66 (116)
|-|+.++-+ |+|.|.-...-..|.....+..+
T Consensus 104 lnisslrye------dsgsykgvshlkdgvivtttmni 135 (349)
T PHA02935 104 LNISSLRYE------DSGSYKGVSHLKDGVIVTTTMNI 135 (349)
T ss_pred eeccceeec------cCCcccCchhhcCceEEEEEEEE
Confidence 445555433 99999887777777665443333
No 284
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=31.84 E-value=44 Score=16.26 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.1
Q ss_pred CceEEEEEEEcCCCce
Q psy11568 44 HSTVYRCRASNEAGVI 59 (116)
Q Consensus 44 d~G~y~C~a~n~~g~~ 59 (116)
.+..|.|...|..|..
T Consensus 9 ssnsflctvqnkng~~ 24 (65)
T PF13220_consen 9 SSNSFLCTVQNKNGDQ 24 (65)
T ss_pred CCCceEEEEecccHhH
Confidence 5678999999988754
No 285
>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ]. The Paf1 complex probably functions during the elongation phase of transcription [].
Probab=31.13 E-value=1.1e+02 Score=18.78 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=14.5
Q ss_pred cEEEEEccC---Ceeeeccccce-EEeeCCeEEe
Q psy11568 2 YVLLWLIRD---NTVIAYVKDLR-IALSNGSLMF 31 (116)
Q Consensus 2 p~v~W~~~~---g~~~~~~~~~~-~~~~~~~l~i 31 (116)
.+|.|++.. |..+.. +.-+ +.+++|++.+
T Consensus 47 ntIRWR~~~~~~g~~~~e-SNAriVrWsDGS~sL 79 (171)
T PF04004_consen 47 NTIRWRYSPDETGEKVKE-SNARIVRWSDGSLSL 79 (171)
T ss_pred cEEEEeecCCCCCCEeee-cccEEEEEcCCceEE
Confidence 368895544 444332 1222 4667775443
No 286
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=30.05 E-value=2.1e+02 Score=22.09 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=18.8
Q ss_pred CCceEEEEEEEcCCCceEEEEEEE
Q psy11568 43 VHSTVYRCRASNEAGVILSRFVHV 66 (116)
Q Consensus 43 ~d~G~y~C~a~n~~g~~~~~~~~v 66 (116)
.+.|.|.-.+....|...+..+.|
T Consensus 708 ~~~G~~~ltVid~~G~~~svk~~i 731 (733)
T COG4953 708 EDAGYYKLTVIDASGRSASVKFNI 731 (733)
T ss_pred CCCCeEEEEEEccCCceeeEEEEe
Confidence 379999999999998887755443
No 287
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=29.58 E-value=69 Score=22.12 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=9.6
Q ss_pred CCceEEEEEEEcCC
Q psy11568 43 VHSTVYRCRASNEA 56 (116)
Q Consensus 43 ~d~G~y~C~a~n~~ 56 (116)
.+...|+|......
T Consensus 291 ~~~~~Y~C~V~Hsg 304 (338)
T PHA02865 291 DMSNQIVCVVFHST 304 (338)
T ss_pred CCCCCcEEEEEeCC
Confidence 36667888877653
No 288
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.86 E-value=2.9e+02 Score=20.77 Aligned_cols=84 Identities=24% Similarity=0.306 Sum_probs=45.8
Q ss_pred CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-E-EEEEEEeCcEeeeeccC-------CCceEecCCCeEEEeCCC
Q psy11568 26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-S-RFVHVKAGSVVSLLDIQ-------GPLFRIEPPYRFEFSNES 96 (116)
Q Consensus 26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~-~~~~v~~~~~~~~~~~~-------~p~~~~~~~~~~~~~~g~ 96 (116)
.+.|.|.+.+.. ++|.|.=..+...|... + +-|.|.... ......+ ...|....-.......|+
T Consensus 297 ~~vL~I~nAT~~------naGVYtly~rg~~G~s~~svfLVtVkg~~-~~rip~p~Vtpk~hga~F~vknYhShVF~pGD 369 (642)
T PHA03281 297 PGVLKFEHMEAH------HAGVYIWNLQGSDGENMYATFLVKLKGDE-ENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGD 369 (642)
T ss_pred CCeeEEEecccc------cceeEEEEecCCCCcceeEEEEEEecCCc-ccCCCCCCccccccCceEEEeccceeEecCCC
Confidence 457888888655 99999988886666433 3 334443211 0111110 122333332344556788
Q ss_pred cEEEEeeecCc----C-CceeEEeC
Q psy11568 97 GGRLDCAAQGS----P-TPKIEWLI 116 (116)
Q Consensus 97 ~~~l~C~~~g~----P-~p~i~W~~ 116 (116)
++.+.-..... | ...+.|++
T Consensus 370 TFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 370 TFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeEEEEEEeeeccCCCceeEEEEEE
Confidence 88777665543 2 34667863
No 289
>KOG1026|consensus
Probab=25.77 E-value=50 Score=25.47 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=23.4
Q ss_pred eEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 89 RFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 89 ~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
...+..+..+.+.|.+.+.|.|.+.|+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~ 227 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWF 227 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeee
Confidence 345667899999999999999999996
No 290
>PHA03286 envelope glycoprotein E; Provisional
Probab=25.33 E-value=2.7e+02 Score=20.30 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=46.2
Q ss_pred CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcE--e---e----eeccCCCceEecCCCeEEEeCC
Q psy11568 27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSV--V---S----LLDIQGPLFRIEPPYRFEFSNE 95 (116)
Q Consensus 27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~--~---~----~~~~~~p~~~~~~~~~~~~~~g 95 (116)
+.|.|.+.+.+ .+|.|.=..+|.-|.... +-|.|...+. . . ..... ..+............|
T Consensus 127 ~~L~I~nAt~q------naGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~-~~f~l~ny~S~lF~~G 199 (492)
T PHA03286 127 KELTILNASSQ------NAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTR-VDLSLKNFKAFLYNVG 199 (492)
T ss_pred CceEEeecccc------ccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccc-eEEEEecccceEecCC
Confidence 36888888655 999999999998776553 4455532100 0 0 00011 2333333355566678
Q ss_pred CcEEEEeeecC--c--C-CceeEEeC
Q psy11568 96 SGGRLDCAAQG--S--P-TPKIEWLI 116 (116)
Q Consensus 96 ~~~~l~C~~~g--~--P-~p~i~W~~ 116 (116)
+++.+.-.... . + ...+.|++
T Consensus 200 DTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 200 DTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred CeEEEEEEEeecccCCCceEEEEEEE
Confidence 88866544431 1 1 44667763
No 291
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.19 E-value=5.6e+02 Score=23.79 Aligned_cols=62 Identities=10% Similarity=-0.026 Sum_probs=35.8
Q ss_pred CceEEEEE--EEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568 44 HSTVYRCR--ASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 44 d~G~y~C~--a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
++|.|.-. |.|..+... +..+.|+.+- -.+.... ....+..|+.+.|.+.....+.-.+.|.
T Consensus 1838 ~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I---------~~L~L~a-s~~~~~~n~~v~fsa~l~~GS~Vtf~w~ 1902 (2740)
T TIGR00864 1838 DAGTFAIRLNASNAVSGKSASREFFAEEPI---------FGLELKA-SKKIAAIGEKVEFQILLAAGSAVNFRLQ 1902 (2740)
T ss_pred CCeEEEEEEEEEcccCcceeeeeEEEEEec---------ceEEEec-ccccccCCCEEEEEEEecCCCceEEEEE
Confidence 78888875 778877665 4556665430 0111111 2234455778888776666555555664
No 292
>PHA03270 envelope glycoprotein C; Provisional
Probab=24.34 E-value=2.8e+02 Score=20.11 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=9.7
Q ss_pred EEEEEccCCeeee
Q psy11568 3 VLLWLIRDNTVIA 15 (116)
Q Consensus 3 ~v~W~~~~g~~~~ 15 (116)
.++| +.||.++.
T Consensus 253 ~lrW-f~ng~~V~ 264 (466)
T PHA03270 253 AFRW-FEGGDEVF 264 (466)
T ss_pred EEEE-EeCCcccc
Confidence 4789 99988875
No 293
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=23.51 E-value=89 Score=19.10 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=17.5
Q ss_pred eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568 28 SLMFPPFPETGFRPDVHSTVYRCRASNEA 56 (116)
Q Consensus 28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~ 56 (116)
-|.|.+.+.+ |+|.|.-...-..
T Consensus 125 lL~i~~p~~~------dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 125 LLRIRNPRPE------DSGIYYLRVWLDG 147 (161)
T ss_pred EEEeCCCCcc------cceEEEEEEEECC
Confidence 4888888666 9999988766543
No 294
>PF10461 Peptidase_S68: Peptidase S68; InterPro: IPR019502 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains serine peptidases belonging to MEROPS peptidase family S68 (PIDD auto-processing protein, clan S-). These proteins are known as Pidd (short for p53-induced protein with a death domain) proteins. Pidd forms a complex with Raidd and procaspase-2 that is known as the 'Piddosome'. The Piddosome forms when DNA damage occurs and either activates NF-kappaB, leading to cell survival, or caspase-2, which leads to apoptosis.
Probab=23.48 E-value=36 Score=14.95 Aligned_cols=7 Identities=29% Similarity=1.350 Sum_probs=5.1
Q ss_pred ceeEEeC
Q psy11568 110 PKIEWLI 116 (116)
Q Consensus 110 p~i~W~~ 116 (116)
|.++||+
T Consensus 24 ~hFSWFl 30 (35)
T PF10461_consen 24 PHFSWFL 30 (35)
T ss_pred cccEEEE
Confidence 6688874
No 295
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=21.43 E-value=98 Score=16.94 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=9.0
Q ss_pred CceEEEEEEE-cCC
Q psy11568 44 HSTVYRCRAS-NEA 56 (116)
Q Consensus 44 d~G~y~C~a~-n~~ 56 (116)
.-|.|.|... ++.
T Consensus 74 ~~GayyCegk~r~~ 87 (96)
T PF10430_consen 74 AIGAYYCEGKVRDE 87 (96)
T ss_dssp --EEEEEEEEETTE
T ss_pred ccceEEEEEEecCc
Confidence 3499999988 443
No 296
>PRK14051 negative regulator GrlR; Provisional
Probab=20.45 E-value=1.3e+02 Score=17.10 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.2
Q ss_pred EeCCCcEEEEeeecCcCCc
Q psy11568 92 FSNESGGRLDCAAQGSPTP 110 (116)
Q Consensus 92 ~~~g~~~~l~C~~~g~P~p 110 (116)
...+.++.|.|++.++..-
T Consensus 80 ~sn~~~~~l~~HV~~Nekl 98 (123)
T PRK14051 80 LSNDNNLTLHCHVRGNEKL 98 (123)
T ss_pred eeCCCCeEEEEEEcCCcEE
Confidence 3468999999999997653
No 297
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.35 E-value=1.4e+02 Score=15.08 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=10.2
Q ss_pred eCCCcEEEEeeecCcCCceeEEe
Q psy11568 93 SNESGGRLDCAAQGSPTPKIEWL 115 (116)
Q Consensus 93 ~~g~~~~l~C~~~g~P~p~i~W~ 115 (116)
..|+++.|.-. |...++|+
T Consensus 3 ~~G~N~TL~Gp----~~~~V~Wy 21 (63)
T PF02440_consen 3 TVGSNVTLVGP----PDGPVTWY 21 (63)
T ss_pred eEcCcEEEeCC----CCCceEEE
Confidence 34666666442 33456675
Done!