RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11568
(116 letters)
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 36.6 bits (85), Expect = 2e-04
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 95 ESGGRLDCAAQGSPTPKIEWLI 116
GRLDC A+G P P I W +
Sbjct: 1 GETGRLDCEAEGIPQPTITWRL 22
Score = 30.1 bits (68), Expect = 0.063
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 64
W + + D R + G+L+ + VY+C ASN G +L+ FV
Sbjct: 20 WRLNGVPIEELPPDPRRRVDGGTLILSNVQPN------DTAVYQCNASNVHGYLLANAFV 73
Query: 65 HV 66
HV
Sbjct: 74 HV 75
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes
such as morphogenesis, development, and angiogenesis.
FGFs bind to four FGF receptor tyrosine kinases (FGFR1,
-2, -3, -4). Receptor diversity is controlled by
alternative splicing producing splice variants with
different ligand binding characteristics and different
expression patterns. FGFRs have an extracellular region
comprised of three Ig-like domains, a single
transmembrane helix, and an intracellular tyrosine
kinase domain. Ligand binding and specificity reside in
the Ig-like domains 2 and 3, and the linker region that
connects these two. FGFR activation and signaling depend
on FGF-induced dimerization, a process involving cell
surface heparin or heparin sulfate proteoglycans. This
group also contains fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 does not have a protein
tyrosine kinase domain at its C terminus; neither does
its cytoplasmic domain appear to interact with a
signaling partner. It has been suggested that FGFRL1 may
not have any direct signaling function, but instead acts
as a decoy receptor trapping FGFs and preventing them
from binding other receptors.
Length = 85
Score = 33.9 bits (78), Expect = 0.003
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 99 RLDCAAQGSPTPKIEWL 115
RL C A G+P P I WL
Sbjct: 13 RLKCPASGNPRPTITWL 29
>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain
of the L1 cell adhesion molecule (CAM) and similar
proteins. Ig6_L1-CAM_like: domain similar to the sixth
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and
five fibronectin type III domains, a transmembrane
region and an intracellular domain. L1 is primarily
expressed in the nervous system and is involved in its
development and function. L1 is associated with an
X-linked recessive disorder, X-linked hydrocephalus,
MASA syndrome, or spastic paraplegia type 1, that
involves abnormalities of axonal growth. This group
also contains NrCAM [Ng(neuronglia)CAM-related cell
adhesion molecule], which is primarily expressed in the
nervous system, and human neurofascin.
Length = 77
Score = 33.5 bits (77), Expect = 0.004
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 9 RDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66
R+ T KD R+ + S G R + + Y+C ASNE G +S +H+
Sbjct: 19 RNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76
>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_1: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 75
Score = 33.4 bits (76), Expect = 0.005
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 99 RLDCAAQGSPTPKIEW 114
RL+CAA G PTP+I W
Sbjct: 2 RLECAATGHPTPQIAW 17
>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like:
fourth immunoglobulin (Ig)-like domain of the L1 cell
adhesion molecule (CAM). L1 is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 76
Score = 33.3 bits (76), Expect = 0.005
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 99 RLDCAAQGSPTPKIEWLI 116
RLDC +G PTP I W I
Sbjct: 5 RLDCQVEGIPTPNITWSI 22
Score = 28.3 bits (63), Expect = 0.33
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 64
W I + D R +S+G+L+ +P + VY+C A N G +L+ V
Sbjct: 20 WSINGAPIEGTDPDPRRHVSSGALILT-----DVQPS-DTAVYQCEARNRHGNLLANAHV 73
Query: 65 HV 66
HV
Sbjct: 74 HV 75
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 31.1 bits (71), Expect = 0.033
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R C G P P + W
Sbjct: 19 RFTCTVTGDPDPTVSWF 35
Score = 24.9 bits (55), Expect = 6.5
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 47 VYRCRASNEAG 57
Y C A+N AG
Sbjct: 70 KYTCVATNSAG 80
>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5.
Ig1_Contactin-5: First Ig domain of the neural cell
adhesion molecule contactin-5. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains, anchored to the membrane by
glycosylphosphatidylinositol. The different contactins
show different expression patterns in the central
nervous system. In rats, a lack of contactin-5 (NB-2)
results in an impairment of the neuronal activity in the
auditory system. Contactin-5 is expressed specifically
in the postnatal nervous system, peaking at about 3
weeks postnatal. Contactin-5 is highly expressed in the
adult human brain in the occipital lobe and in the
amygdala; lower levels of expression have been detected
in the corpus callosum, caudate nucleus, and spinal
cord.
Length = 94
Score = 31.1 bits (70), Expect = 0.039
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 79 GPLFRIEPPYRFEFSNESGGR---LDCAAQGSPTPKIEWLI 116
GP+F ++ P F +S + L+C A+G+P P WL
Sbjct: 1 GPVF-VQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLR 40
Score = 31.1 bits (70), Expect = 0.043
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
WL R+ T I D R +L +G+L+ E S Y+C A+N G ILSR
Sbjct: 38 WL-RNGTEIDTESDYRYSLIDGNLIISNPSEV-----KDSGRYQCLATNSIGSILSR 88
>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor. Ig2_FGFR:
second immunoglobulin (Ig)-like domain of fibroblast
growth factor (FGF) receptor. FGF receptors bind FGF
signaling polypeptides. FGFs participate in multiple
processes such as morphogenesis, development, and
angiogenesis. FGFs bind to four FGF receptor tyrosine
kinases (FGFR1, -2, -3, -4). Receptor diversity is
controlled by alternative splicing producing splice
variants with different ligand binding characteristics
and different expression patterns. FGFRs have an
extracellular region comprised of three IG-like domains,
a single transmembrane helix, and an intracellular
tyrosine kinase domain. Ligand binding and specificity
reside in the Ig-like domains 2 and 3, and the linker
region that connects these two. FGFR activation and
signaling depend on FGF-induced dimerization, a process
involving cell surface heparin or heparin sulfate
proteoglycans.
Length = 85
Score = 30.2 bits (68), Expect = 0.068
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ C A G+PTP + WL
Sbjct: 13 KFRCPAAGNPTPTMRWL 29
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 30.1 bits (68), Expect = 0.081
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 31 FPPFPETGFRPDV---HSTVYRCRASNEAGVILSRFVHVK 67
F P+V S Y C ASN G S V +
Sbjct: 40 LSSSQNGFFTPNVSAEDSGTYTCVASNGGGGKTSNPVTLT 79
>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). Ig4_ NrCAM:
fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). NrCAM belongs to
the L1 subfamily of cell adhesion molecules (CAMs) and
is comprised of an extracellular region having six
IG-like domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. NrCAM
is primarily expressed in the nervous system.
Length = 76
Score = 29.6 bits (66), Expect = 0.095
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 98 GRLDCAAQGSPTPKIEWLI 116
G L C A G+P P I WL
Sbjct: 4 GTLICRANGNPKPSISWLT 22
Score = 26.1 bits (57), Expect = 1.9
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 45 STVYRCRASNEAGVILSR-FVHV 66
S VY+C ASNE G +L+ FV+V
Sbjct: 53 SAVYQCNASNEYGYLLANAFVNV 75
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 100
Score = 30.2 bits (68), Expect = 0.11
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 100 LDCAAQGSPTPKIEWL 115
L+C A+G PTP I+WL
Sbjct: 21 LNCKAEGRPTPTIQWL 36
Score = 24.8 bits (54), Expect = 8.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
RI L +GSL F G + VY C A N G +SR
Sbjct: 53 RIVLPSGSLFFLRVVH-GRKGRSDEGVYVCVAHNSLGEAVSR 93
>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor_like-1(FGFRL1).
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain
of fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal
peptide, three extracellular Ig-like modules, a
transmembrane segment, and a short intracellular domain.
FGFRL1 is expressed preferentially in skeletal tissues.
Similar to FGF receptors, the expressed protein
interacts specifically with heparin and with FGF2.
FGFRL1 does not have a protein tyrosine kinase domain at
its C terminus; neither does its cytoplasmic domain
appear to interact with a signaling partner. It has been
suggested that FGFRL1 may not have any direct signaling
function, but instead acts as a decoy receptor trapping
FGFs and preventing them from binding other receptors.
Length = 82
Score = 29.4 bits (66), Expect = 0.12
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 96 SGGRLDCAAQGSPTPKIEWL 115
S RL C A G+P P I WL
Sbjct: 10 SSVRLKCVASGNPRPDITWL 29
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 95
Score = 29.8 bits (67), Expect = 0.14
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 100 LDCAAQGSPTPKIEWL 115
L+C+A+G P PKIEW
Sbjct: 19 LNCSAEGEPPPKIEWK 34
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1
belongs to the L1 subfamily of cell adhesion molecules
(CAMs) and is comprised of an extracellular region
having six Ig-like domains and five fibronectin type III
domains, a transmembrane region and an intracellular
domain. L1 is primarily expressed in the nervous system
and is involved in its development and function. L1 is
associated with an X-linked recessive disorder, X-linked
hydrocephalus, MASA syndrome, or spastic paraplegia type
1, that involves abnormalities of axonal growth. This
group also contains the chicken neuron-glia cell
adhesion molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 28.9 bits (65), Expect = 0.18
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 100 LDCAAQGSPTPKIEWL 115
L+C A+G PTP+I W+
Sbjct: 3 LECIAEGLPTPEISWI 18
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrKB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 90
Score = 29.0 bits (65), Expect = 0.23
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 102 CAAQGSPTPKIEWLI 116
C A+GSP PK+EW+I
Sbjct: 22 CTAEGSPLPKVEWII 36
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 27.8 bits (62), Expect = 0.35
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A+G+P P I WL
Sbjct: 6 TLTCPAEGNPVPNITWL 22
Score = 24.7 bits (54), Expect = 4.8
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57
WL +D + R S +L + S +Y C A N AG
Sbjct: 21 WL-KDGKPLPE--SNRFVASGSTLTIKSV-----SLE-DSGLYTCVAENSAG 63
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 27.5 bits (61), Expect = 0.48
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 99 RLDCAAQGSPTPKIEW 114
++ C+AQG P P I W
Sbjct: 2 QIPCSAQGDPEPTITW 17
>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of
NrCAM (Ng (neuronglia) CAM-related cell adhesion
molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like
domain of NrCAM (Ng (neuronglia) CAM-related cell
adhesion molecule). NrCAM belongs to the L1 subfamily
of cell adhesion molecules (CAMs) and is comprised of
an extracellular region having six Ig-like domains and
five fibronectin type III domains, a transmembrane
region, and an intracellular domain. NrCAM is primarily
expressed in the nervous system.
Length = 77
Score = 27.6 bits (61), Expect = 0.62
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 38 GFRPDVHSTVYRCRASNEAGVILSRFVHVK 67
G + + + VY+C A NE G +S + ++
Sbjct: 48 GEKAEAYEGVYQCTARNERGAAVSNNIVIR 77
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the
L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 27.6 bits (61), Expect = 0.63
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 100 LDCAAQGSPTPKIEWL 115
L+C A+G PTP++ W
Sbjct: 3 LECIAEGLPTPEVHWD 18
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 27.6 bits (61), Expect = 0.67
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 100 LDCAAQGSPTPKIEWL 115
L C A+G P P++ WL
Sbjct: 3 LRCHAEGIPLPRLTWL 18
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin.
Ig1_Contactin: First Ig domain of contactins. Contactins
are neural cell adhesion molecules and are comprised of
six Ig domains followed by four fibronectin type
III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal activity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 27.0 bits (60), Expect = 1.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 79 GPLFRIEPPYRFEFSNESGGR---LDCAAQGSPTPKIEWLI 116
GP+F E P F ES L+C A+GSP P WL+
Sbjct: 1 GPVF-EEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLM 40
Score = 25.9 bits (57), Expect = 2.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 45 STVYRCRASNEAGVILSR 62
+ Y+C ASN G +LSR
Sbjct: 71 AGRYQCLASNIVGTVLSR 88
>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like:
domain similar to the third immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
IG-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains. Included in this group is
Drosophila LAR (DLAR).
Length = 69
Score = 26.4 bits (58), Expect = 1.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 100 LDCAAQGSPTPKIEWL 115
L C A G+P P ++W+
Sbjct: 6 LTCVAVGAPMPYVKWM 21
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 26.7 bits (58), Expect = 1.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A G P P I WL
Sbjct: 2 TLTCLASGPPPPTITWL 18
Score = 25.9 bits (56), Expect = 2.9
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 8 IRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 59
+ + + + + +L S Y C ASN AG +
Sbjct: 24 LPSSVLTRVRSSRGTSSGSSTLTISNVTLE------DSGTYTCVASNSAGTV 69
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 26.4 bits (58), Expect = 1.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 98 GRLDCAAQGSPTPKIEW 114
L+C+A+G P P I W
Sbjct: 1 VTLNCSAEGYPPPTIVW 17
>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of
myotilin, palladin, and myopalladin.
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in
myotilin, palladin, and myopalladin. Myotilin,
palladin, and myopalladin function as scaffolds that
regulate actin organization. Myotilin and myopalladin
are most abundant in skeletal and cardiac muscle;
palladin is ubiquitously expressed in the organs of
developing vertebrates and plays a key role in cellular
morphogenesis. The three family members each interact
with specific molecular partners: all three bind to
alpha-actinin; in addition, palladin also binds to
vasodilator-stimulated phosphoprotein (VASP) and ezrin,
myotilin binds to filamin and actin, and myopalladin
also binds to nebulin and cardiac ankyrin repeat protein
(CARP).
Length = 75
Score = 26.3 bits (58), Expect = 2.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 99 RLDCAAQGSPTPKIEW 114
RL+C P P+I W
Sbjct: 2 RLECRVSAIPPPQIFW 17
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 26.3 bits (58), Expect = 2.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A GSP P++ W
Sbjct: 13 TLSCEASGSPPPEVTWY 29
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 26.3 bits (58), Expect = 2.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A GSP P++ W
Sbjct: 13 TLSCEASGSPPPEVTWY 29
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1 and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain. Also included in this group is
NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2
is differentially expressed in the developing and mature
olfactory epithelium (OE).
Length = 96
Score = 26.3 bits (58), Expect = 2.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 100 LDCAAQGSPTPKIEW 114
L C A+G P P+I W
Sbjct: 21 LTCEAEGDPIPEITW 35
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II
(D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain
II (D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2. Perlecan
consists of five domains. Domain I has three putative
heparan sulfate attachment sites; domain II has four LDL
receptor-like repeats, and one Ig-like repeat; domain
III resembles the short arm of laminin chains; domain IV
has multiple Ig-like repeats (21 repeats in human
perlecan); and domain V resembles the globular G domain
of the laminin A chain and internal repeats of EGF.
Perlecan may participate in a variety of biological
functions including cell binding, LDL-metabolism,
basement membrane assembly and selective permeability,
calcium binding, and growth- and neurite-promoting
activities.
Length = 78
Score = 25.9 bits (57), Expect = 2.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 100 LDCAAQGSPTPKIEW 114
C A G PTP I W
Sbjct: 6 FTCVATGVPTPIINW 20
>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like
domain of human neurofascin (NF).
Ig6_hNeurofascin_like: the sixth immunoglobulin
(Ig)-like domain of human neurofascin (NF). NF belongs
to the L1 subfamily of cell adhesion molecules (CAMs)
and is comprised of an extracellular region having six
Ig-like domains and five fibronectin type III domains,
a transmembrane region, and a cytoplasmic domain. NF
has many alternatively spliced isoforms having
different temporal expression patterns during
development. NF participates in axon subcellular
targeting and synapse formation, however little is
known of the functions of the different isoforms.
Length = 77
Score = 25.7 bits (56), Expect = 2.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 18 KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 67
KD R+++ S G RP+ + Y+C A N G LS + ++
Sbjct: 28 KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILLQ 77
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 26.1 bits (57), Expect = 2.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 100 LDCAAQGSPTPKIEW 114
L C A G P P I W
Sbjct: 22 LTCEASGDPIPSITW 36
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural
cell adhesion molecule contactin-2. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases
TAG-1, axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. The
first four Ig domains form the intermolecular binding
fragment which arranges as a compact U-shaped module by
contacts between Ig domains 1 and 4, and domains 2 and
3. It has been proposed that a linear zipper-like array
forms, from contactin-2 molecules alternatively provided
by the two apposed membranes.
Length = 85
Score = 25.6 bits (56), Expect = 3.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R +C A G+P P WL
Sbjct: 18 RWECKASGNPRPAYRWL 34
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 25.4 bits (55), Expect = 3.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 102 CAAQGSPTPKIEWL 115
CAA G+P P+I W
Sbjct: 5 CAASGNPDPEITWF 18
>gnl|CDD|227469 COG5140, UFD1, Ubiquitin fusion-degradation protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 331
Score = 26.1 bits (57), Expect = 4.8
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 82 FRIEPPYRFEFSNESGGR 99
I+ P FE S+ G
Sbjct: 61 LNIQYPMLFEISHSDGIY 78
>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig4_Neogenin: fourth
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain,
and an intracellular domain.
Length = 71
Score = 24.9 bits (54), Expect = 5.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 100 LDCAAQGSPTPKIEWL 115
+C G PTP ++W+
Sbjct: 4 FECEVTGKPTPTVKWV 19
>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-2 (also known as
OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-2 (also known as OCAM/mamFas II and
RNCAM). NCAM-2 is organized similarly to NCAM ,
including five N-terminal Ig-like domains and two
fibronectin type III domains. NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE), and may function like NCAM, as an
adhesion molecule.
Length = 98
Score = 25.3 bits (55), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 87 PYRFEFSNES---GGR--LDCAAQGSPTPKIEW 114
P+ + NE+ G L C A+G P P+I W
Sbjct: 3 PHIIQLKNETTVENGAATLSCKAEGEPIPEITW 35
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 25.8 bits (57), Expect = 5.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 14 IAYVKDLRIALSNGS-LMFPPFPETGFRPDVHSTVYRC-RASNEAGV 58
YVK L++A+SNG L + + + F +T +A EAG+
Sbjct: 239 PVYVKALQLAVSNGWELQYNGWDGSYF----PTTRIAARKAYREAGI 281
>gnl|CDD|192286 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain).
UPF1 is an essential RNA helicase that detects mRNAs
containing premature stop codons and triggers their
degradation. This domain contains 3 zinc binding motifs
and forms interactions with another protein (UPF2) that
is also involved nonsense-mediated mRNA decay (NMD).
Length = 152
Score = 25.5 bits (56), Expect = 6.8
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 48 YRCRASNEAGVILSRFVHVKAGSVVSLL 75
Y C + N V L FV K+ +VV LL
Sbjct: 64 YNCGSKN---VFLLGFVPAKSEAVVVLL 88
>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin.
Ig3_Contactin_like: Third Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 24.7 bits (54), Expect = 7.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 100 LDCAAQGSPTPKIEW 114
L+C A G+P P+I+W
Sbjct: 21 LECFALGNPVPQIKW 35
>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1.
Ig1_Contactin-1: First Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 93
Score = 24.9 bits (54), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 79 GPLFRIEPPYRF--EFSNESGGRLDCAAQGSPTPKIEW 114
GP+F +P E S E ++C A+ +P P +W
Sbjct: 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKW 38
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS), and
are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 69
Score = 24.3 bits (53), Expect = 7.8
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 102 CAAQGSPTPKIEW 114
C G P P + W
Sbjct: 5 CEVGGDPVPTVLW 17
>gnl|CDD|238303 cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as
conjugated bile salt acid hydrolase (CBAH), catalyzes
the hydrolysis of penicillin V to yield 6-amino
penicillanic acid (6-APA), an important key intermediate
of semisynthetic penicillins. PVA has an N-terminal
nucleophilic cysteine, as do other members of the Ntn
hydrolase family to which PVA belongs. This
nucleophilic cysteine is exposed by post-translational
prossessing of the PVA precursor. PVA forms a
homotetramer.
Length = 303
Score = 25.3 bits (56), Expect = 8.4
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY 48
+ W++ + + VK+ AL N +++ P G P +H +
Sbjct: 104 FITWVLGNFASVEEVKE---ALKNINVVDDPINLLGPVPPLHWIIS 146
>gnl|CDD|234753 PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.
Length = 177
Score = 25.1 bits (56), Expect = 8.6
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 18 KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV---ILSRFVHVKAGSVVSL 74
+D+R L G LM PF RP ++T Y R NE V + S + K S
Sbjct: 6 RDIRKMLEEGRLMIEPFDPDQVRP--NATGYDLRLGNEFRVFTNVNSTVIDPKNFDPDSF 63
Query: 75 LDIQGPLFRIEPPYRF 90
+DI+G +F + PP F
Sbjct: 64 VDIEGEVFIL-PPGEF 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.442
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,020,238
Number of extensions: 505677
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 60
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.4 bits)