RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11568
(116 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 72.7 bits (178), Expect = 1e-16
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W+ D T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+SR VH
Sbjct: 38 WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 97
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA---QGSPTPKIEWL 115
V+A + + S + C + W
Sbjct: 98 VRAVVA--------QYYEADVNKEHVIRGNS-AVIKCLIPSFVADFVEVVSWH 141
Score = 51.5 bits (123), Expect = 5e-09
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 16/95 (16%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
R+ +G+L+ S Y C +N G SV ++L + P
Sbjct: 264 RVKQVSGTLIIKDAVVE------DSGKYLCVVNNSVGGE----------SVETVLTVTAP 307
Query: 81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
L P C G+P + W+
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 342
Score = 47.6 bits (113), Expect = 9e-08
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+GP+F EP R +FSN +G ++C A G+P P+I W+
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 39
Score = 43.4 bits (102), Expect = 3e-06
Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 20/119 (16%)
Query: 6 WLIRDNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
W + + + L +G L P+ Y+CR +
Sbjct: 140 WHTDEEENYFPGAEYDGKYLVLPSGELHI-----REVGPEDGYKSYQCRTKHRLTG---- 190
Query: 63 FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE------SGGRLDCAAQGSPTPKIEWL 115
+ + L I P+ P L C AQG P P W
Sbjct: 191 --ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY 247
Score = 29.1 bits (65), Expect = 0.25
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 6/42 (14%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
I S L + + +Y+C N+ +
Sbjct: 347 AIGHSESVLRI-----ESVKKE-DKGMYQCFVRNDRESAEAS 382
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 71.9 bits (176), Expect = 3e-16
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W+ D T + V LR S+G L+FPPF +R +VH+ VY C A N+ G I+SR VH
Sbjct: 73 WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 132
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC---AAQGSPTPKIEWL 115
V+A + + S + C + + W
Sbjct: 133 VRAVVA--------QYYEADVNKEHVIRGNS-AVIKCLIPSFVADFVEVVSWH 176
Score = 58.4 bits (141), Expect = 2e-11
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
++ A G + D +GP+F EP R +FSN +G ++C
Sbjct: 10 WLMLFAAVALIACGSQTLA-------ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECK 62
Query: 104 AQGSPTPKIEWL 115
A G+P P+I W+
Sbjct: 63 ASGNPMPEIIWI 74
Score = 50.3 bits (120), Expect = 1e-08
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 16/101 (15%)
Query: 15 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSL 74
A V + R+ +G+L+ + S Y C +N G V
Sbjct: 294 AVVLNDRVKQVSGTLIIKDA-----VVE-DSGKYLCVVNNSVGGESVETV---------- 337
Query: 75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
L + PL P C G+P + W+
Sbjct: 338 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378
Score = 48.4 bits (115), Expect = 7e-08
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQG 79
I S L + + +Y+C N+ + + +
Sbjct: 383 AIGHSESVLRI-----ESVKKE-DKGMYQCFVRNDRESAEASAELKLGGRFDP------- 429
Query: 80 PLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
P+ R E + E G L C A G+PTP+I W
Sbjct: 430 PVIRQAFQ---EETMEPGPSVFLKCVAGGNPTPEISWE 464
Score = 47.6 bits (113), Expect = 1e-07
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 21/120 (17%)
Query: 6 WLIRDNTVI--AYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
W + D + L +G L P+ Y+CR +
Sbjct: 175 WHTDEEENYFPGAEYDGKYLVLPSGELHI-----REVGPEDGYKSYQCRTKHRLTG---- 225
Query: 63 FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES----GG---RLDCAAQGSPTPKIEWL 115
+ + L I P+ P + G L C AQG P P W
Sbjct: 226 --ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283
Score = 46.1 bits (109), Expect = 4e-07
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 6 WLIRDNTVI---AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
W D I + R+ L H+ + C A N AG
Sbjct: 654 WT-LDGQAISEDLGITTSRVGRRGSVLTI-----EAVEAS-HAGNFTCHARNLAGHQ--- 703
Query: 63 FVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ L++ P + +EP + +++C A G P P++ W
Sbjct: 704 -------QFTTPLNVYVPPRWILEPTDKAFAQGSDA-KVECKADGFPKPQVTWK 749
Score = 43.4 bits (102), Expect = 3e-06
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
+Y+C A ++ GV L++ G + + + + E+ + C G
Sbjct: 504 LYKCIAKSKVGVA-EHSAK---------LNVYGLPYIRQMEKKAIVAGETL-IVTCPVAG 552
Query: 107 SPTPKIEWL 115
P I W
Sbjct: 553 YPIDSIVWE 561
Score = 41.8 bits (98), Expect = 1e-05
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 16/111 (14%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W RDN + + ++ NG+L+ Y C A N+ G +
Sbjct: 560 WE-RDNRALPINRKQKV-FPNGTLIIENVERNS-----DQATYTCVAKNQEGYSARGSLE 612
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
V V+ L P L C+ G P I+W
Sbjct: 613 V---QVMVL-----PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655
Score = 30.3 bits (68), Expect = 0.11
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66
I + G+L + + Y C A N G LS + +
Sbjct: 767 NIRVEEGTLHV-----DNIQKT-NEGYYLCEAINGIGSGLSAVIMI 806
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 67.9 bits (166), Expect = 6e-15
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 15/111 (13%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W + T + D R ++ +GSL+ + + Y+C A+N G I+SR
Sbjct: 42 WK-LNGTDVDIGMDFRYSVVDGSLLINNPNK-----TQDAGTYQCIATNSFGTIVSREAK 95
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL 115
++ + F+ G L C S W+
Sbjct: 96 LQFAYL--------ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWI 138
Score = 52.5 bits (126), Expect = 2e-09
Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 18/110 (16%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W D IA + R SNG L P F + + Y C A N G +++
Sbjct: 239 WRRADGKPIA--RKARRHKSNGILEIPNFQQE------DAGSYECVAENSRGKNVAKGQ- 289
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
L ++ + E +C A G P P WL
Sbjct: 290 ---------LTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330
Score = 46.0 bits (109), Expect = 3e-07
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 16/115 (13%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV---HSTVYRCRASNEAG--VIL 60
W+ + ++ G+L V Y C +N +L
Sbjct: 137 WI-FNEYPSYQDNRRFVSQETGNLYIA---------KVEKSDVGNYTCVVTNTVTNHKVL 186
Query: 61 SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ + + + + P ++ P + +L+C A G+P P I W
Sbjct: 187 GPPTPLILRNDGVMGEYE-PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Score = 41.0 bits (96), Expect = 2e-05
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 79 GPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
GP+F EP + + +L C +G+P P I W
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWK 43
Score = 33.7 bits (77), Expect = 0.007
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKA 68
RI + G+L T + +Y+C A N+ GVI S + V A
Sbjct: 341 RIQIEQGTLNI-----TIVNLS-DAGMYQCVAENKHGVIFSSAELSVIA 383
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 64.5 bits (157), Expect = 1e-13
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W + T + D R L G L+ + Y+C A+N G ++SR
Sbjct: 41 WK-MNGTELKMGPDSRYRLVAGDLVISNP-----VKAKDAGSYQCVATNARGTVVSREAS 94
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL 115
++ G + F E + + G C+ P WL
Sbjct: 95 LRFGFL--------QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137
Score = 52.2 bits (125), Expect = 3e-09
Identities = 18/95 (18%), Positives = 24/95 (25%), Gaps = 16/95 (16%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
+ S L Y C A N G + + I
Sbjct: 251 KWLSSEPLLHIQNVDFE------DEGTYECEAENIKGRD----------TYQGRIIIHAQ 294
Query: 81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
++ E S R C A G P P + WL
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329
Score = 47.2 bits (112), Expect = 2e-07
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
WL+ + R + G+L + Y C A++ I
Sbjct: 136 WLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS------DLGNYSCFATSHIDFITKSVF 189
Query: 65 HVKAGSVVSLLDI--QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ ++ D P + + P L+C A G+P P+I+W
Sbjct: 190 SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242
Score = 39.1 bits (91), Expect = 1e-04
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 78 QGPLFRIEPPYR--FEFSNESGGRLDCAAQGSPTPKIEWL 115
GP+F +P + E S E L C A+ +P W
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWK 42
Score = 34.1 bits (78), Expect = 0.005
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKA 68
RI +S G L F + + S +Y+C A N+ G + + + V+A
Sbjct: 340 RIEVSGGELRF-----SKLVLE-DSGMYQCVAENKHGTVYASAELTVQA 382
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 58.7 bits (142), Expect = 1e-11
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 6 WLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
W + D R+ L +G+L + +P S VYRC A N A
Sbjct: 155 WQKNQQDLNPIPGDSRVVVLPSGALQI-----SRLQPG-DSGVYRCSARNPASTRTGNEA 208
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
V ++S + L+ ++ P L+C G P P WL
Sbjct: 209 EV---RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL 256
Score = 54.8 bits (132), Expect = 3e-10
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRAS-NEAGVILSRF 63
W +D ++A D R L NGSL+ + +Y+C AS ++G I+SR
Sbjct: 56 WK-KDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP-DEGLYQCEASLGDSGSIISRT 113
Query: 64 VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
V + GPL + L C G P P I W
Sbjct: 114 AKVM---------VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156
Score = 52.1 bits (125), Expect = 2e-09
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 17/110 (15%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
WL R VI L +L+ + S Y C + + I
Sbjct: 255 WL-RGEEVIQLRSKKYSLLGGSNLLISNVTDD------DSGTYTCVVTYKNENI------ 301
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
S + L + P + + P +CA G P P + W+
Sbjct: 302 ----SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Score = 33.3 bits (76), Expect = 0.010
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 11/66 (16%)
Query: 51 RASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PT 109
R +E + + F EP L+C+A+
Sbjct: 2 RWGSELE---------SSHHHHHHGGRRSLHFVSEPS-DAVTMRGGNVLLNCSAESDRGV 51
Query: 110 PKIEWL 115
P I+W
Sbjct: 52 PVIKWK 57
Score = 26.7 bits (59), Expect = 2.1
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 24 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKA 68
+ +L G Y+C A NEAG S + V
Sbjct: 362 VGGSNLRI-----LGVVKS-DEGFYQCVAENEAGNAQSSAQLIVPK 401
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 57.2 bits (138), Expect = 4e-11
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 6 WLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
W R++ KD R+++ +G+L+ +G RP+ + Y+C A N+ G LS
Sbjct: 51 WT-RNSRFFNIAKDPRVSMRRRSGTLVIDFR--SGGRPEEYEGEYQCFARNKFGTALSNR 107
Query: 64 VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL 115
+ ++ PL+ E + L C G P+P I W+
Sbjct: 108 IRLQVSKS--------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWM 152
Score = 52.6 bits (126), Expect = 2e-09
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
+ N +L E S Y C ASN+ G I + ++
Sbjct: 269 KFENFNKALRITNVSEE------DSGEYFCLASNKMGSIRHTIS----------VRVKAA 312
Query: 81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ ++ P + GRL C A G+P P ++W+
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWM 347
Score = 46.8 bits (111), Expect = 2e-07
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 11/114 (9%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
W+ I D R++ NG L F D+ + Y C A + +
Sbjct: 151 WMSSSMEPITQ--DKRVSQGHNGDLYF----SNVMLQDMQTD-YSCNARFHFTHTIQQKN 203
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG---RLDCAAQGSPTPKIEWL 115
+ + + + P G L+C A G PTP I W
Sbjct: 204 PFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257
Score = 38.7 bits (90), Expect = 1e-04
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 64 VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ + + Q P + ++C A+G+P P W
Sbjct: 1 IEIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWT 52
Score = 36.8 bits (85), Expect = 6e-04
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 64
W++ + + + ++ +++F + VY+C SNE G +L+ FV
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIF-----RDTQIS-SRAVYQCNTSNEHGYLLANAFV 399
Query: 65 HV 66
V
Sbjct: 400 SV 401
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 54.1 bits (130), Expect = 2e-10
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 19/114 (16%)
Query: 6 WLIRDNTVIAY----VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
W + ++ + + + +L + +Y+C + E G
Sbjct: 37 WFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQSE 90
Query: 62 RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
V+VK I L P EF + C S P I W
Sbjct: 91 ATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Score = 28.3 bits (63), Expect = 0.43
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAG-VIL 60
W + KD+R LSN L + T YRC A I
Sbjct: 134 WK-HKGRDVILKKDVRFIVLSNNYLQIR---------GIKKTDEGTYRCEGRILARGEIN 183
Query: 61 SRFVHV 66
+ + V
Sbjct: 184 FKDIQV 189
Score = 26.3 bits (58), Expect = 2.2
Identities = 4/18 (22%), Positives = 4/18 (22%), Gaps = 1/18 (5%)
Query: 99 RLDCAAQGSP-TPKIEWL 115
C G I W
Sbjct: 21 FFLCQVAGDAKDKDISWF 38
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 54.5 bits (131), Expect = 4e-10
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 19/114 (16%)
Query: 6 WLIRDNTVIAYVKDLRIA----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
+ ++ + + RI S L+F VY C N G
Sbjct: 246 YF-KNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE------DEGVYTCEVDNGVGKPQK 298
Query: 62 RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ + +VVS P + +P + C G P P + W
Sbjct: 299 HSLKL---TVVSA-----PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS 344
Score = 53.0 bits (127), Expect = 1e-09
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 18/112 (16%)
Query: 6 WLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
W +D + + + GSL+F + Y+C A AGV SR +
Sbjct: 41 WK-KDGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEGHYQCFAETPAGVASSRVI 93
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
+ + + + +LDC P P I W
Sbjct: 94 SFRKTYL--------IASPAKTHEKTPIEGRP-FQLDCVLPNAYPKPLITWK 136
Score = 46.4 bits (110), Expect = 3e-07
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 13/103 (12%)
Query: 19 DLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDI 77
D RI +G+L F + Y C A N A V + +
Sbjct: 152 DRRITAGPDGNLYFTIVTKEDVS---DIYKYVCTAKNAAVDEEV----VLVEYEIKGVTK 204
Query: 78 QGPLFRIEPPYRFEFSNESGGR-----LDCAAQGSPTPKIEWL 115
++ EP ++ + + C +P +
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247
Score = 31.8 bits (72), Expect = 0.035
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
+ P+ + +P F + L+C +G+ K W
Sbjct: 5 KYPVLKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWK 42
Score = 30.3 bits (68), Expect = 0.099
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHV 66
R +++ L+ G + Y CRA+NE G V V
Sbjct: 354 RATVTDSGLVI-----KGVKNG-DKGYYGCRATNEHGDKYFETLVQV 394
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 53.3 bits (128), Expect = 6e-10
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 6/111 (5%)
Query: 6 WLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
W ++ ++ + + G + D Y C A N G +S
Sbjct: 40 WR-KNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRD--DAPYECVAENGVGDAVSADA 96
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ P+ P R + + C A G+PTP I W+
Sbjct: 97 TLTI-YEGDKTPAGFPVITQGPGTRVIEVGHTV-LMTCKAIGNPTPNIYWI 145
Score = 35.5 bits (82), Expect = 0.001
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILSR-- 62
W+ ++ T + R +L +G L E Y C A N G S+
Sbjct: 144 WI-KNQTKVDMSNP-RYSLKDGFLQIENSREE-------DQGKYECVAENSMGTEHSKAT 194
Query: 63 FVHVKA 68
++VK
Sbjct: 195 NLYVKV 200
Score = 33.6 bits (77), Expect = 0.007
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
CAA+G P P I W
Sbjct: 25 SFYCAARGDPPPSIVWR 41
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 53.4 bits (128), Expect = 9e-10
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 15/112 (13%)
Query: 5 LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
LW +N + L+++ N +L + Y+C N S V
Sbjct: 143 LWW-VNNQSLPVSPRLQLSNGNRTLTLFNVTRN------DTASYKCETQNPVSARRSDSV 195
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
+ GP P + + L C A +P + W +
Sbjct: 196 ILNVLY--------GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Score = 50.0 bits (119), Expect = 2e-08
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 5 LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
LW + + L+++ N +L + Y C N S V
Sbjct: 499 LWW-VNGQSLPVSPRLQLSNGNRTLTLFNVTRN------DARAYVCGIQNSVSANRSDPV 551
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
+ V+ D I PP S + L C + +P+P+ W I
Sbjct: 552 TLD---VLYGPDT----PIISPPDSSYLSGAN-LNLSCHSASNPSPQYSWRI 595
Score = 50.0 bits (119), Expect = 2e-08
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 5 LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
LW +N + L+++ N +L Y C NE V S V
Sbjct: 321 LWW-VNNQSLPVSPRLQLSNDNRTLTLLSVTRN------DVGPYECGIQNELSVDHSDPV 373
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
+ + GP P + L C A +P + WLI
Sbjct: 374 ILNV--------LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417
Score = 40.7 bits (95), Expect = 3e-05
Identities = 10/95 (10%), Positives = 18/95 (18%), Gaps = 14/95 (14%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
I N SL+ + + Y V + + P
Sbjct: 65 EIIYPNASLLIQNIIQN------DTGFYTLHVIKSDLVNEEATGQF-------RVYPELP 111
Query: 81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
I ++ C + W
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWW 145
Score = 40.3 bits (94), Expect = 4e-05
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 14/99 (14%)
Query: 18 KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLD 76
D I L E +S +Y C+A+N A + + + +
Sbjct: 417 IDGNIQQHTQELFISNITEK------NSGLYTCQANNSASGHSRTTVKTITVSAEL---- 466
Query: 77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P I ++ C + T + W+
Sbjct: 467 ---PKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV 502
Score = 36.1 bits (83), Expect = 0.001
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 14/102 (13%)
Query: 14 IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG-VILSRFVHVKAGSVV 72
++ + S L P + +S Y C+A N + + +
Sbjct: 235 YSWFVNGTFQQSTQELFIP-----NITVN-NSGSYTCQAHNSDTGLNRTTVTTIT----- 283
Query: 73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
+ + P I +E L C + T + W
Sbjct: 284 --VYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWW 323
Score = 26.5 bits (58), Expect = 2.8
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAG-VILSRFVHVK 67
++ Y C SN A S +
Sbjct: 615 NNGTYACFVSNLATGRNNSIVKSIT 639
Score = 25.3 bits (55), Expect = 5.5
Identities = 2/15 (13%), Positives = 2/15 (13%)
Query: 100 LDCAAQGSPTPKIEW 114
L W
Sbjct: 19 LLVHNLPQHLFGYSW 33
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 51.3 bits (123), Expect = 3e-09
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
R+ L +GSL F VY C A N G +S ++ +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLEVAIL-------RD 112
Query: 81 LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
FR P E ++C +G P P I W
Sbjct: 113 DFRQNPSDVMVAVGEP-AVMECQPPRGHPEPTISWK 147
Score = 33.6 bits (77), Expect = 0.006
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P +E P S L+C A+G PTP IEW
Sbjct: 10 PRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY 44
Score = 30.2 bits (68), Expect = 0.095
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W +D + + + RI + G LM ++ + Y C +N G S
Sbjct: 146 WK-KDGSPLDDKDE-RITIRGGKLMITYTRKS------DAGKYVCVGTNMVGERESEVAE 197
Query: 66 V 66
+
Sbjct: 198 L 198
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 51.4 bits (123), Expect = 5e-09
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-- 62
W V + RI L +G+L ET Y C A+N AGV S
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEET------DQGKYECVATNSAGVRYSSPA 195
Query: 63 --FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+V V+ + P F I P + + C A GSP P ++W+
Sbjct: 196 NLYVRVQNVA---------PRFSILPMSHEIMPGGNV-NITCVAVGSPMPYVKWM 240
Score = 49.8 bits (119), Expect = 2e-08
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 8/111 (7%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 64
W + + + I + D VY C A N G I +
Sbjct: 40 WN-KKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRD--ENVYECVAQNSVGEITVHAKL 96
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
V L P + P + + + CAA G+P P+I W
Sbjct: 97 TVLREDQ---LPSGFPNIDMGPQLKVVERTRTA-TMLCAASGNPDPEITWF 143
Score = 33.3 bits (76), Expect = 0.010
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C A G P P++ W
Sbjct: 25 SFVCQATGDPKPRVTWN 41
Score = 25.6 bits (56), Expect = 4.8
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKA 68
Y C A + GVI + + VK+
Sbjct: 269 NYTCVAMSSLGVIEAVAQITVKS 291
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 49.9 bits (119), Expect = 9e-09
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV-------KAGSVVSLLDI 77
+ L+F + Y CR +N S++ + V +
Sbjct: 63 NTSELIFNAVHVK------DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+EP + + L C A GSP P +W
Sbjct: 117 SKLQICVEPTSQKLMPGSTL-VLQCVAVGSPIPHYQWF 153
Score = 33.3 bits (76), Expect = 0.009
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+L C A G P + +W
Sbjct: 37 KLCCRATGHPFVQYQWF 53
Score = 29.5 bits (66), Expect = 0.20
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 9/44 (20%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPP 87
H Y C N+ S+ + I P
Sbjct: 176 HQGTYWCHVYNDRDSQDSK---------KVEIIIDELNNLGHPD 210
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 50.3 bits (120), Expect = 1e-08
Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 21/119 (17%)
Query: 2 YVLLWLIRDNTVIAYVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56
+ W N RI++ + +L + +Y+C + E
Sbjct: 33 KDISWF-SPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAED 85
Query: 57 GVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
G V+VK I L P EF + C S P I W
Sbjct: 86 GTQSEATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Score = 46.4 bits (110), Expect = 2e-07
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
W + KD+R LSN L G + YRC A ++
Sbjct: 134 WK-HKGRDVILKKDVRFIVLSNNYLQI-----RGIKKT-DEGTYRCEGRILARGEINF-- 184
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
+ ++ P + + G L C A G P P + W
Sbjct: 185 -----KDIQVIVNVPPTVQARQS-IVNATANLGQSVTLVCDADGFPEPTMSWT 231
Score = 27.1 bits (60), Expect = 1.3
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 48 YRCRASNEAGVILSRF---VHVK 67
Y C A N+AG + V K
Sbjct: 269 YVCIAENKAGEQDASIHLKVFAK 291
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 49.4 bits (118), Expect = 1e-08
Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 18/113 (15%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
WL N + + D R A L+N +L ++ +YRC EA +
Sbjct: 36 WL-YHNEEVTTISDNRFAMLANNNLQILNINKS------DEGIYRCEGRVEARGEID--- 85
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
++ + P P F + E G C A GSP P I W
Sbjct: 86 -----FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 133
Score = 32.4 bits (74), Expect = 0.018
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ C SP P + WL
Sbjct: 21 EVVCRVSSSPAPAVSWL 37
Score = 30.9 bits (70), Expect = 0.055
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAGVILSR 62
W R+ +I + + SN L ++ ++ Y CRA+N+AG +
Sbjct: 132 WF-RNGKLIEENEKYILKGSNTELTVR---------NIINSDGGPYVCRATNKAGEDEKQ 181
Query: 63 F---VHVK 67
V V+
Sbjct: 182 AFLQVFVQ 189
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 49.8 bits (119), Expect = 2e-08
Identities = 27/113 (23%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
WL N + + D R A L+N +L +YRC EA +
Sbjct: 132 WL-YHNEEVTTISDNRFAMLANNNLQI-----LNINKS-DEGIYRCEGRVEARGEID--- 181
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
++ + P P F + E G C A GSP P I W
Sbjct: 182 -----FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 229
Score = 49.4 bits (118), Expect = 2e-08
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
+YRC+A++ G V L+I L E EF + C
Sbjct: 74 IYRCQATDAKGQTQEATVV---------LEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 124
Query: 107 SPTPKIEWL 115
SP P + WL
Sbjct: 125 SPAPAVSWL 133
Score = 27.1 bits (60), Expect = 1.5
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAGVILSR 62
W R+ +I + + SN L ++ ++ Y CRA+N+AG +
Sbjct: 228 WF-RNGKLIEENEKYILKGSNTELTVR---------NIINSDGGPYVCRATNKAGEDEKQ 277
Query: 63 F---VHVK 67
V V+
Sbjct: 278 AFLQVFVQ 285
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 49.1 bits (117), Expect = 2e-08
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
R+ +G+L F + D Y C A N G +SR ++ + L
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQD--GGEYWCVAKNRVGQAVSRHASLQ---IAVL----RD 109
Query: 81 LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
F P + L+C +G P P + W+
Sbjct: 110 DF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWI 144
Score = 35.2 bits (81), Expect = 0.002
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P P NE L+C +G P P IEW
Sbjct: 10 PRIIEHPTDLVVKKNEPA-TLNCKVEGKPEPTIEWF 44
Score = 28.3 bits (63), Expect = 0.44
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 47 VYRCRASNEAGVILSRF----VHVKAGSV 71
Y+C A N G S + V VKA +
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 48.2 bits (115), Expect = 3e-08
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
+YRC+A++ G V +L+I L E EF + C
Sbjct: 72 IYRCQATDAKGQTQEATV---------VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 107 SPTPKIEWL 115
SP P + WL
Sbjct: 123 SPAPAVSWL 131
Score = 31.7 bits (72), Expect = 0.031
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPP-FPE-TGFRPDVHSTVYRCRASNEAGVILS- 61
WL N + + D R A L+N +L G +YRC EA +
Sbjct: 130 WL-YHNEEVTTISDNRFAMLANNNLQILNINKSDEG--------IYRCEGRVEARGEIDF 180
Query: 62 --RFVHVK 67
V V
Sbjct: 181 RDIIVIVN 188
Score = 29.4 bits (66), Expect = 0.20
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C A G P +
Sbjct: 21 FFTCTAIGEPESIDWYN 37
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 48.8 bits (116), Expect = 4e-08
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 24/125 (19%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W+ +D T + V R+ + L + S Y CR V+ V
Sbjct: 43 WV-KDGTGL--VPSERVLVGPQRLQVL-----NASHE-DSGAYSCRQRLTQRVLCHFSVR 93
Query: 66 V------------KAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG---RLDCAAQGSPTP 110
V + + + +D P + + R C A G+PTP
Sbjct: 94 VTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP 153
Query: 111 KIEWL 115
I WL
Sbjct: 154 SISWL 158
Score = 43.5 bits (102), Expect = 3e-06
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 47 VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
Y C N+ G I + + V S P+ + P S C
Sbjct: 194 NYTCVVENKFGSIRQTYTLDVLERSPHR------PILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 106 GSPTPKIEWL 115
P I+WL
Sbjct: 248 SDAQPHIQWL 257
Score = 26.5 bits (58), Expect = 2.6
Identities = 5/18 (27%), Positives = 6/18 (33%), Gaps = 1/18 (5%)
Query: 99 RLDCAAQ-GSPTPKIEWL 115
L C G P W+
Sbjct: 27 ELSCPPPGGGPMGPTVWV 44
Score = 25.7 bits (56), Expect = 4.8
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSR-FVHVKA 68
+ Y C A N G ++ V
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVLP 327
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 47.9 bits (114), Expect = 4e-08
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 18/110 (16%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W R+ +I + + SN L + Y CRA+N+AG +
Sbjct: 38 WF-RNGKLIEENEKYILKGSNTELTVRNIINS------DGGPYVCRATNKAGEDEKQAF- 89
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
L + I+ + N L C A+G P P+I W
Sbjct: 90 ---------LQVFVQPHIIQLKNETTYENGQV-TLVCDAEGEPIPEITWK 129
Score = 32.5 bits (74), Expect = 0.016
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C A GSP P I W
Sbjct: 23 TFSCRASGSPEPAISWF 39
Score = 24.4 bits (53), Expect = 8.9
Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVK 67
Y C A++ G ++ ++
Sbjct: 171 RYDCEAASRIGGHQKSMYLDIE 192
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 47.4 bits (113), Expect = 6e-08
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 15/110 (13%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W + + I + L ++ +Y C A+N G +
Sbjct: 41 WTRNKILIKLFDTRYSIRENGQLLTILSVEDS------DDGIYCCTANNGVGGAVESCGA 94
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ V + P P L C G+P P + W+
Sbjct: 95 L----QVKM----KPKITRPPINVKIIEGLKA-VLPCTTMGNPKPSVSWI 135
Score = 33.2 bits (76), Expect = 0.008
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P+ P + E CA + P P+I W
Sbjct: 8 PVI-TTPLETVDALVEEVATFMCAVESYPQPEISWT 42
Score = 28.5 bits (64), Expect = 0.36
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 18/70 (25%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAGVILSR 62
W+ + ++ + + + L +GSL +V YRC A N G S+
Sbjct: 134 WI-KGDSALRENSRIAV-LESGSLRIH---------NVQKEDAGQYRCVAKNSLGTAYSK 182
Query: 63 F----VHVKA 68
V V A
Sbjct: 183 LVKLEVEVFA 192
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 48.1 bits (114), Expect = 7e-08
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 17/111 (15%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W+ + +++ S++ ET + Y +EA
Sbjct: 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET------QAGEYLLFIQSEAT-------- 127
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
+ ++ L+ + PY E+ L C ++ P P +EW++
Sbjct: 128 -NYTILFTVSIRNTLLYTLRRPYFR--KMENQDALVCISESVPEPIVEWVL 175
Score = 46.2 bits (109), Expect = 4e-07
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 21/111 (18%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W++ D+ + ++ + + ++ T RC A NE G +R
Sbjct: 173 WVLCDSQGESCKEESPAVVKKEEKVLH---------ELFGTDIRCCARNELGRECTRLFT 223
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
+ + P F E + C A + + W
Sbjct: 224 I----------DLNQTPQTTLPQLFLKVGEP-LWIRCKAVHVNHGFGLTWE 263
Score = 40.8 bits (95), Expect = 2e-05
Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 14/71 (19%)
Query: 45 STVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA 104
S+ Y + + + + L Q + E + L
Sbjct: 27 SSSYPMVSESPEDLGCA-------------LRPQSSGT-VYEAAAVEVDVSASITLQVLV 72
Query: 105 QGSPTPKIEWL 115
W+
Sbjct: 73 DAPGNISCLWV 83
Score = 40.8 bits (95), Expect = 3e-05
Identities = 8/74 (10%), Positives = 17/74 (22%), Gaps = 15/74 (20%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLD 101
+ Y C +S +L+ I F ++ +
Sbjct: 301 DTGYYTCSSSKHPSQ-------------SALVTIVEKGFINATNSSEDYEIDQYEEFCFS 347
Query: 102 CAAQGSPTPKIEWL 115
+ P + W
Sbjct: 348 VRFKAYPQIRCTWT 361
Score = 26.9 bits (59), Expect = 1.7
Identities = 4/23 (17%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
Y A N+ F +++++
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIRS 414
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 47.5 bits (113), Expect = 7e-08
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 64
W + ++ + I +GS D +Y C ASN G I +
Sbjct: 40 WN-KKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRD--EAIYECVASNNVGEISVSTRL 96
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
V + P + P + + + CAA G+P P+I W
Sbjct: 97 TVLR---EDQIPRGFPTIDMGPQLKVVERTRTA-TMLCAASGNPDPEITWF 143
Score = 34.0 bits (78), Expect = 0.005
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C A G P PKI W
Sbjct: 25 SFICQATGDPRPKIVWN 41
Score = 29.8 bits (67), Expect = 0.17
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 47 VYRCRASNEAGVILSR--FVHVKA 68
Y C A+N AG S ++V+
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRG 204
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 47.1 bits (112), Expect = 8e-08
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 6 WLIRDNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
W+ +D V+ + L I +S G L + + Y C+ + +S
Sbjct: 36 WV-KDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS------DAGRYWCQVEDGGETEIS 88
Query: 62 RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
+ V + +V + P F +EP N +L C A G P P I W
Sbjct: 89 QPVWL---TVEGV-----PFFTVEPKDLAVPPNAP-FQLSCEAVGPPEPVTIVWW 134
Score = 32.8 bits (75), Expect = 0.010
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+L+C+ +G P I+W+
Sbjct: 21 KLNCSVEGMEEPDIQWV 37
Score = 32.5 bits (74), Expect = 0.014
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 45 STVYRCRASNEAGVILSR--FVHVK 67
ST++ C A N G+ SR VH++
Sbjct: 158 STMFSCEAHNLKGLASSRTATVHLQ 182
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 47.9 bits (114), Expect = 9e-08
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 22/99 (22%)
Query: 20 LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQ 78
+ S L + S Y C A N AG S + VK
Sbjct: 340 MSFVESVAVLEM-----YNLSVE-DSGDYTCEAHNAAGSASSSTSLKVKEP--------- 384
Query: 79 GPLFRIEPPYRFEFSNESGGR--LDCAAQGSPTPKIEWL 115
P+FR +P G L+C QG+P ++ W
Sbjct: 385 -PVFRKKP---HPVETLKGADVHLECELQGTPPFQVSWH 419
Score = 47.5 bits (113), Expect = 1e-07
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 20/114 (17%)
Query: 6 WLIRDNTVIAYVKDLRIALSN--GSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR 62
W +++T + ++ N SL+ Y C+A N G + S
Sbjct: 39 WY-KEHTKLRSAPAYKMQFKNNVASLVINKVDHS-------DVGEYTCKAENSVGAVASS 90
Query: 63 F-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ +K + P F + E +C GS ++ W
Sbjct: 91 AVLVIKERKL-------PPSFARKLKDVHETLGFPV-AFECRINGSEPLQVSWY 136
Score = 45.6 bits (108), Expect = 6e-07
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 18/113 (15%)
Query: 6 WLIRDNTVIAYVKDLRIALS--NGSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR 62
W +D ++ +L+ + +L H Y C ASN G S
Sbjct: 135 WY-KDGELLKDDANLQTSFIHNVATLQILQTDQS-------HVGQYNCSASNPLGTASSS 186
Query: 63 FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
++L + + P F P + + G C G+ KI W
Sbjct: 187 AK-------LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232
Score = 45.2 bits (107), Expect = 7e-07
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 47 VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
Y C ASN AG + V+ P F + + R +C
Sbjct: 267 QYTCYASNVAGKDSCSAQLGVQEP----------PRFIKKLEPSRIVKQDEHTRYECKIG 316
Query: 106 GSPTPKIEWL 115
GSP K+ W
Sbjct: 317 GSPEIKVLWY 326
Score = 41.3 bits (97), Expect = 2e-05
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 48 YRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCAAQG 106
Y+C+ASN+ G + V + ++ P F + E +L +G
Sbjct: 455 YQCKASNDVGSD----------TCVGSITLKAPPRFVKKLSDISTVVGEEV-QLQATIEG 503
Query: 107 SPTPKIEWL 115
+ + W
Sbjct: 504 AEPISVAWF 512
Score = 32.5 bits (74), Expect = 0.019
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P F IEP E + L C G+P +I W
Sbjct: 6 PYF-IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWY 40
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 47.4 bits (113), Expect = 9e-08
Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 24/115 (20%)
Query: 6 WLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
W +DN I + ++ L + +L + + Y C ASN AG
Sbjct: 39 WA-KDNREIRPGGNYKMTLVENTATLTVLKVTKG------DAGQYTCYASNVAGKDSCSA 91
Query: 64 ---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
V P F + + R +C GSP K+ W
Sbjct: 92 QLGVQEP------------PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134
Score = 46.3 bits (110), Expect = 2e-07
Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 27/116 (23%)
Query: 6 WLIRDNTVIAYVKDLRIAL--SNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILSR 62
W +D T I R++ S L E S Y C A N AG S
Sbjct: 133 WY-KDETEIQESSKFRMSFVESVAVLEMYNLSVE-------DSGDYTCEAHNAAGSASSS 184
Query: 63 F---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
V P+FR +P L+C QG+P ++ W
Sbjct: 185 TSLKVKEP------------PVFRKKPHPVETLKGADV-HLECELQGTPPFQVSWH 227
Score = 32.4 bits (74), Expect = 0.020
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P F ++P ESG C G+ KI W
Sbjct: 6 PFFDLKPVSVDLALGESG-TFKCHVTGTAPIKITWA 40
Score = 27.0 bits (60), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
Y+C+ASN+ G + +KA
Sbjct: 262 EYQCKASNDVGSYTCVGSITLKA 284
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 47.2 bits (112), Expect = 1e-07
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 21/118 (17%)
Query: 6 WLIRDNTVIAYVKDLR--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
WL + + D R ++ +NG+L + Y C S+ +
Sbjct: 44 WL-LNEFPVFITMDKRRFVSQTNGNLYIANVEAS------DKGNYSCFVSSPSITKSVF- 95
Query: 64 VHVKAGSVVSLLDIQGPLFRIEPPY-RFEFSNES---GG--RLDCAAQGSPTPKIEWL 115
+ L+ I + P +F + G L+C A G+P P I W
Sbjct: 96 -----SKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR 148
Score = 28.7 bits (64), Expect = 0.33
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
+Y C A N G + ++V+A
Sbjct: 179 IYECEAENIRGKDKHQARIYVQA 201
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 46.6 bits (111), Expect = 2e-07
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 44 HSTVYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC 102
+TVY+ RA+N+ G + + V+ + I P +E +
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEVEVPA-----KIHLPKT-LEGMGAVHALRGEVVSIKI 126
Query: 103 AAQGSPTPKIEWL 115
G P P I W
Sbjct: 127 PFSGKPDPVITWQ 139
Score = 33.2 bits (76), Expect = 0.009
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P F E +S L C G P P ++W
Sbjct: 5 PHF-KEELRNLNVRYQSNATLVCKVTGHPKPIVKWY 39
Score = 26.6 bits (59), Expect = 1.6
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVK 67
Y A N G+ + V
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVA 196
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 46.7 bits (110), Expect = 2e-07
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
Y C A + V +++L+ P + ES + C
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVV-----RQLTVLERVAPTITGNLENQTTSIGESI-EVSCT 689
Query: 104 AQGSPTPKIEWL 115
A G+P P+I W
Sbjct: 690 ASGNPPPQIMWF 701
Score = 42.8 bits (100), Expect = 5e-06
Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 11/72 (15%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S +Y+C A N+ G V + P ES L C
Sbjct: 524 VSALYKCEAVNKVGRG----------ERVISFHVTRGPEITLQPDMQPTEQESV-SLWCT 572
Query: 104 AQGSPTPKIEWL 115
A S + W
Sbjct: 573 ADRSTFENLTWY 584
Score = 41.7 bits (97), Expect = 1e-05
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAA 104
+Y C AS+ K + V + + P G R+
Sbjct: 304 LYTCAASSGLM-------TKKNSTFVRVHE--KPFVAFGSGMESLVEATVGERVRIPAKY 354
Query: 105 QGSPTPKIEWL 115
G P P+I+W
Sbjct: 355 LGYPPPEIKWY 365
Score = 40.9 bits (95), Expect = 3e-05
Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 10/75 (13%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGR--LD 101
+ Y +N K VVSL+ P + S + G L
Sbjct: 392 DTGNYTVILTNPIS-------KEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLT 444
Query: 102 CAAQGSPTP-KIEWL 115
C P P I W
Sbjct: 445 CTVYAIPPPHHIHWY 459
Score = 40.5 bits (94), Expect = 4e-05
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
++ + C A S +V ++ + + P + E S L+C
Sbjct: 194 YAGMVFCEAKINDESYQSIM------YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247
Query: 104 AQGSPTPKIEW 114
A+ I++
Sbjct: 248 ARTELNVGIDF 258
Score = 38.2 bits (88), Expect = 2e-04
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
+ Y+C +V+V+ I + Y E N++ + C
Sbjct: 97 DTGAYKCFYRETDLAS-VIYVYVQ---DYRSPFIASVSDQHGVVYITENKNKT-VVIPCL 151
Query: 104 AQGSPTPKIEW 114
S
Sbjct: 152 GSISNLNVSLC 162
Score = 37.0 bits (85), Expect = 6e-04
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 15/71 (21%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
++ C + A V L + P I+ + ++ L
Sbjct: 8 AVALWLCVETRAASVGLPSVS------------LDLPRLSIQKD---ILTIKANTTLQIT 52
Query: 104 AQGSPTPKIEW 114
+G W
Sbjct: 53 CRGQRDLDWLW 63
Score = 32.0 bits (72), Expect = 0.028
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 64
W +DN + + + N +L + +Y C+A + G
Sbjct: 700 WF-KDNETLVEDSGIVLKDGNRNLTIRRVRKE------DEGLYTCQACSVLGCAKVEAFF 752
Query: 65 HVKA 68
++
Sbjct: 753 IIEG 756
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 46.0 bits (109), Expect = 3e-07
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 17/114 (14%)
Query: 6 WLIRDNTVI---AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
WL ++ + ++ + SL+ P Y C NE G I
Sbjct: 53 WL-KNGKEFKQEHRIGGYKVRNQHWSLIM-----ESVVPS-DKGNYTCVVENEYGSINHT 105
Query: 63 F-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ + V S P+ + P C P I+W+
Sbjct: 106 YHLDVVERSRHR------PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153
Score = 33.3 bits (76), Expect = 0.009
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ C A G+P P + WL
Sbjct: 38 KFRCPAGGNPMPTMRWL 54
Score = 25.2 bits (55), Expect = 6.0
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 48 YRCRASNEAGVILSR-FVHVKA 68
Y C+ SN G ++ V
Sbjct: 200 YICKVSNYIGQANQSAWLTVLP 221
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 46.0 bits (108), Expect = 4e-07
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 15/96 (15%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
+ NG L + + Y C + + G + V I+ P
Sbjct: 83 NRRVKNGDLWIANY-----TSNDSHRRYLCTVTTKNGDCVQGIVR---------SHIRKP 128
Query: 81 LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
I Y ++ G L C I W
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWY 164
Score = 37.9 bits (87), Expect = 2e-04
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S Y C + I + V + + + I P E + C
Sbjct: 193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEP-ANITCT 251
Query: 104 AQGSPTPK----IEWL 115
A + I+W
Sbjct: 252 AVSTSLLVDDVLIDWE 267
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 46.2 bits (109), Expect = 4e-07
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W+ + +++ S++ ET + Y +EA
Sbjct: 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET------QAGEYLLFIQSEAT-------- 127
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ ++ L+ + P + E+ L C ++ P P +EW+
Sbjct: 128 -NYTILFTVSIRNTLLYTLRRP--YFRKMENQDALVCISESVPEPIVEWV 174
Score = 41.2 bits (96), Expect = 2e-05
Identities = 13/75 (17%), Positives = 17/75 (22%), Gaps = 24/75 (32%)
Query: 44 HSTVYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL 100
Y A N+ F + K P E S +
Sbjct: 389 QPGEYIFHAENDDAQFTKMFTLNIRRK------------PQVLAEA---------SASQA 427
Query: 101 DCAAQGSPTPKIEWL 115
C + G P P W
Sbjct: 428 SCFSDGYPLPSWTWK 442
Score = 41.2 bits (96), Expect = 2e-05
Identities = 7/73 (9%), Positives = 13/73 (17%), Gaps = 13/73 (17%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEP-PYRFEFSNESGGRLDC 102
+ Y C +S + K +E
Sbjct: 301 DTGYYTCSSSKHPSQSALVTIVEK------------GFINATNSSEDYEIDQYEEFCFSV 348
Query: 103 AAQGSPTPKIEWL 115
+ P + W
Sbjct: 349 RFKAYPQIRCTWT 361
Score = 40.1 bits (93), Expect = 5e-05
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 12/81 (14%)
Query: 36 ETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE 95
E ++ T RC A NE G +R +D+ + P F E
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLF---------TIDLNQT-PQTTLPQLFLKVGE 243
Query: 96 SGGRLDCAAQG-SPTPKIEWL 115
+ C A + + W
Sbjct: 244 P-LWIRCKAVHVNHGFGLTWE 263
Score = 37.4 bits (86), Expect = 4e-04
Identities = 10/72 (13%), Positives = 17/72 (23%), Gaps = 4/72 (5%)
Query: 47 VYRCRASNEAGVILS---RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
V +N++ V S V + L Q + E + L
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVL 71
Query: 104 AQGSPTPKIEWL 115
W+
Sbjct: 72 VDAPGNISCLWV 83
Score = 30.1 bits (67), Expect = 0.15
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKA 68
+ +C A N G ++
Sbjct: 485 KGFLVKCCAYNSLGTSCETILLNSPG 510
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 45.5 bits (108), Expect = 4e-07
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 47 VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCA 103
VY C A+NE G + + + ++A P F P + ++ G RL
Sbjct: 77 VYTCIATNEVGEVETSSKLLLQAT----------PQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 104 AQGSPTPKIEWL 115
G P P + W
Sbjct: 127 YIGRPVPAMTWF 138
Score = 32.7 bits (75), Expect = 0.011
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+L C G P P I+W
Sbjct: 26 QLSCQIVGRPLPDIKWY 42
Score = 28.1 bits (63), Expect = 0.52
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVK 67
H+ Y+ + SN G + + V ++
Sbjct: 171 HAGKYKVQLSNVFGTVDAILDVEIQ 195
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 45.3 bits (107), Expect = 5e-07
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 24 LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFR 83
+ L + + Y+C +S+ + + ++G +
Sbjct: 65 IVVSQLRITSLQLS------DTGQYQCLVFLGHQTFVSQPGY---------VGLEGLPYF 109
Query: 84 IEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
+E P + + L C AQG P P + WL
Sbjct: 110 LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL 142
Score = 31.8 bits (72), Expect = 0.029
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
++ + C A N GV SR +
Sbjct: 167 KTSSFSCEAHNAKGVTTSRTATI 189
Score = 24.9 bits (54), Expect = 8.1
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 99 RLDCAAQ-GSPTPKIEWL 115
L C Q P++ WL
Sbjct: 21 TLRCQLQVQGEPPEVHWL 38
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 44.6 bits (105), Expect = 1e-06
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 11/111 (9%)
Query: 5 LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
+ L+R+ K + + S Y C+ S +
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL------DSNTYVCKTMVNGRESTSTGI 175
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+K V+ + + P ++EP E+ ++ C+A + L
Sbjct: 176 WLK----VNRVHPEPPQIKLEPSKLVRIRGEA-AQIVCSATNAEVGFNVIL 221
Score = 34.5 bits (79), Expect = 0.004
Identities = 6/76 (7%), Positives = 14/76 (18%), Gaps = 16/76 (21%)
Query: 44 HSTVYRCRASNEAGVILSR---FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL 100
++ YRC + + +V L
Sbjct: 62 NTGTYRCTELEDPMAGSTTIHLYVKDP------------AHSWNLLAQEVTVVEGQEAVL 109
Query: 101 DCAAQG-SPTPKIEWL 115
C + + +
Sbjct: 110 PCLITDPALKDSVSLM 125
Score = 25.7 bits (56), Expect = 4.8
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 44 HSTVYRCRASNEAG---------VILSRFVHVK 67
+ +Y C ASN+ G V+ S H
Sbjct: 256 DAGIYSCVASNDVGTRTATMNFQVVESHHHHHH 288
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 44.3 bits (104), Expect = 1e-06
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
H Y CR + + L + PL R +F + S + C
Sbjct: 78 HDGNYLCRMKLGETEV----------TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCT 127
Query: 104 AQGSPTPKIEWL 115
P P ++WL
Sbjct: 128 VNAFPHPHVQWL 139
Score = 28.5 bits (63), Expect = 0.45
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 6 WLIRDNTVIA-YVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
WL+ + A + + +GSL +P C N+ +
Sbjct: 138 WLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP-KPW--HLPVTCVGKNDKEEAHGVY 194
Query: 64 V 64
V
Sbjct: 195 V 195
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 44.3 bits (104), Expect = 1e-06
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 31 FPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRF 90
P + GF Y C+ + + S V L + +
Sbjct: 139 VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAY------YVYRLQVSSINVSVNAVQTV 192
Query: 91 EFSNESGGRLDCAAQGSPTPKIEWL 115
E+ L C G+ EW
Sbjct: 193 VRQGEN-ITLMCIVIGNEVVNFEWT 216
Score = 34.3 bits (78), Expect = 0.004
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE-SGGRLDC 102
+ Y C ++ G+ + + + D + F F E + + C
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLY----IFVPDPTVGFLPNDAEELFIFLTEITEITIPC 117
Query: 103 AAQGSPTPKIEW 114
P +
Sbjct: 118 RVTD-PQLVVTL 128
Score = 24.7 bits (53), Expect = 8.8
Identities = 3/25 (12%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVI-LSRFVHVK 67
S Y C + + +++
Sbjct: 253 DSGTYTCNVTESVNDHQDEKAINIT 277
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 43.7 bits (103), Expect = 2e-06
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 11/80 (13%)
Query: 47 VYRCRASNEAG-----VILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE----SG 97
Y + V LS + +A + L + + G
Sbjct: 73 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132
Query: 98 G--RLDCAAQGSPTPKIEWL 115
L C G P P++ WL
Sbjct: 133 KALNLTCNVWGDPPPEVSWL 152
Score = 26.4 bits (58), Expect = 2.5
Identities = 3/11 (27%), Positives = 4/11 (36%)
Query: 47 VYRCRASNEAG 57
Y N+ G
Sbjct: 188 KYGLVVKNKYG 198
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 43.6 bits (103), Expect = 2e-06
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 47 VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
Y +A+N +G S + VKA + P F ++ S RL
Sbjct: 77 RYSLKATNGSGQATSTAELLVKAETAP-------PNF-VQRLQSMTVRQGSQVRLQVRVT 128
Query: 106 GSPTPKIEWL 115
G PTP +++
Sbjct: 129 GIPTPVVKFY 138
Score = 32.4 bits (74), Expect = 0.017
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ G P P++ W
Sbjct: 24 TFEAHISGFPVPEVSWF 40
Score = 26.2 bits (58), Expect = 2.5
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVK 67
Y A+N G S + V+
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 42.1 bits (99), Expect = 3e-06
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 6 WLIRDNTVIAYVKDL----RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
W + + KD R+ L +GSL F VY C A N G +S
Sbjct: 43 WY-KGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVS 100
Query: 62 RFVHVK 67
++
Sbjct: 101 HDASLE 106
Score = 34.4 bits (79), Expect = 0.002
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L+C A+G PTP IEW
Sbjct: 28 TLNCKAEGRPTPTIEWY 44
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 43.5 bits (102), Expect = 3e-06
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 6 WLIRDNTVIAYVKD--LRIALSNGSLMF-PPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
W ++++ + R+ +G+L P E S Y C N +
Sbjct: 59 WH-KNDSARTVPGEEETRMWAQDGALWLLPALQE-------DSGTYVCTTRNASYCD-KM 109
Query: 63 FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESG--GRLDCAAQGSPTPKIEWL 115
+ ++ V D P F P ++ L + KI+W
Sbjct: 110 SIELR---VFENTDAFLP-FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWY 160
Score = 37.4 bits (86), Expect = 4e-04
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 44 HSTVYRCRASNEAGVI---LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL 100
+ YRC + ++R + ++ + + P+ I P S S +
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELR---IKKKKEETIPVI-ISPLKTISASLGSRLTI 246
Query: 101 DCAA---QGSPTPKIEW 114
C G+P + W
Sbjct: 247 PCKVFLGTGTPLTTMLW 263
Score = 26.6 bits (58), Expect = 2.1
Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 46 TVYRCRASNEAGVILSRFVHVK 67
++C N + VK
Sbjct: 312 MDFKCVVHNTLSFQ-TLRTTVK 332
Score = 26.2 bits (57), Expect = 2.6
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 99 RLDCAAQGSPTPKIEWL 115
A SP + W
Sbjct: 44 PYWLWASVSPRINLTWH 60
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 43.1 bits (101), Expect = 4e-06
Identities = 16/73 (21%), Positives = 19/73 (26%), Gaps = 18/73 (24%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC 102
Y SN F V+V P + G L C
Sbjct: 386 EGGTYTFLVSNSDVNAAIAFNVYVNT-----------------KPEILTYDRLVNGMLQC 428
Query: 103 AAQGSPTPKIEWL 115
A G P P I+W
Sbjct: 429 VAAGFPEPTIDWY 441
Score = 38.1 bits (88), Expect = 3e-04
Identities = 11/111 (9%), Positives = 19/111 (17%), Gaps = 11/111 (9%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
L I +M H C E +LS
Sbjct: 147 SLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY-----HRLCLHCSVDQEGKSVLSEKFI 201
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
+K + + + C + + W
Sbjct: 202 LKVRPA-----FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWK 247
Score = 37.7 bits (87), Expect = 3e-04
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 18/78 (23%)
Query: 44 HSTVYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG-- 98
S V+ C A+N G V K I P G
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVVDK------------GFINIFPMINTTVFVNDGENV 331
Query: 99 RLDCAAQGSPTPK-IEWL 115
L + P P+ +W+
Sbjct: 332 DLIVEYEAFPKPEHQQWI 349
Score = 29.6 bits (66), Expect = 0.22
Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 14/72 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
++ Y C + + FV + + + + C
Sbjct: 91 NTGKYTCTNKHGLSNSIYVFVRDP------------AKLFLVDRSLYGKEDND-TLVRCP 137
Query: 104 AQGSPTPKIEWL 115
P L
Sbjct: 138 L-TDPEVTNYSL 148
Score = 28.9 bits (64), Expect = 0.38
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFRIEP 86
H+ C+A N+ G S + + +G +I P
Sbjct: 485 HNGTVECKAYNDVGKT-SAYFN---------FAFKGNNKEQIHP 518
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 43.0 bits (101), Expect = 4e-06
Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 47 VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
+Y ++ G SR + +A + ++++ + + + + E
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEAFKEL-MMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133
Query: 106 GSPTPKIEWL 115
K+ W
Sbjct: 134 YVEDLKVNWS 143
Score = 42.2 bits (99), Expect = 8e-06
Identities = 9/80 (11%), Positives = 16/80 (20%), Gaps = 11/80 (13%)
Query: 47 VYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLF-RIEPPYRFEFSNES-----G 97
Y + + ++ + G
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237
Query: 98 G--RLDCAAQGSPTPKIEWL 115
L C G P P++ WL
Sbjct: 238 KALNLTCNVWGDPPPEVSWL 257
Score = 26.8 bits (59), Expect = 1.7
Identities = 7/23 (30%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
Y N+ G S F V V
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVFI 315
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 42.6 bits (100), Expect = 5e-06
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
Y C N+ G I + + V+ + L P + C
Sbjct: 86 NYTCVVENKFGSI-RQTYTLD---VLERSPHRPILQAGLPANQTAVLGSDV-EFHCKVYS 140
Query: 107 SPTPKIEWL 115
P I+WL
Sbjct: 141 DAQPHIQWL 149
Score = 33.0 bits (75), Expect = 0.012
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R C A G+PTP I WL
Sbjct: 34 RFRCPAAGNPTPSISWL 50
Score = 24.9 bits (54), Expect = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 48 YRCRASNEAGVI 59
Y CRA+N GV
Sbjct: 197 YLCRATNFIGVA 208
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 42.8 bits (100), Expect = 5e-06
Identities = 15/99 (15%), Positives = 22/99 (22%), Gaps = 12/99 (12%)
Query: 21 RIALSNGSLMFPPFPETGFRPDV---HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDI 77
+ L+ +V H Y C AS V +
Sbjct: 156 HFSGVKDRLIVM---------NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKP 206
Query: 78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
P+ E S +L C G + W
Sbjct: 207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW 245
Score = 41.2 bits (96), Expect = 2e-05
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 6 WLIRDNTV-IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF- 63
W D+ ++ + RI L F P S Y C N + + +
Sbjct: 40 WYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE------DSGHYYCVVRNSSYCLRIKIS 93
Query: 64 VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC------AAQGSPTPKIEWL 115
+ + ++ + G L C + + PK++W
Sbjct: 94 AKFVENE-------PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWY 144
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 42.3 bits (99), Expect = 6e-06
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 15/96 (15%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
R+ S+ + F + Y C S E G V + L + P
Sbjct: 59 RVTFSSSGITFSSVTRK------DNGEYTCMVSEEGGQNYGE-VSIH-------LTVLVP 104
Query: 81 LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
+ + + L C GSP + W
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWF 140
Score = 33.0 bits (75), Expect = 0.012
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 99 RLDCAAQGSPTPKIEW 114
+L C G +P++EW
Sbjct: 20 KLTCTYSGFSSPRVEW 35
Score = 26.9 bits (59), Expect = 1.5
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA 68
I +G L+F P S Y C+A N G + S H+ A
Sbjct: 163 TIDPKSGDLIFDPVTAF------DSGEYYCQAQNGYGTAMRSEAAHMDA 205
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 41.9 bits (98), Expect = 8e-06
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 15/96 (15%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
R+ + F + Y C S E G V L + P
Sbjct: 62 RVTFLPTGITFKSVTRE------DTGTYTCMVSEEGGNSYG--------EVKVKLIVLVP 107
Query: 81 LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
+ + + L C GSP + W
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWF 143
Score = 33.8 bits (77), Expect = 0.007
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 99 RLDCAAQGSPTPKIEW 114
+L CA G +P++EW
Sbjct: 23 KLSCAYSGFSSPRVEW 38
Score = 26.8 bits (59), Expect = 1.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSR-FVHVKA 68
+ Y C A N G ++ V ++A
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 41.6 bits (97), Expect = 1e-05
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 20/110 (18%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W++ + A V S G + + + C A N+ G
Sbjct: 192 WILTELEQSATVMKSGGLPSLGLTLANVTSDL------NRKNVTCWAENDVGRAEVSVQ- 244
Query: 66 VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+++ P + + G P P + WL
Sbjct: 245 ---------VNVSFPASVQLHTAVEMHHW----CIPFSVDGQPAPSLRWL 281
Score = 28.9 bits (64), Expect = 0.29
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
P +++ P + L C +G + W++
Sbjct: 157 GVPTLKVQVPNASVDVGDDV-LLRCQVEGRGLEQAGWIL 194
Score = 25.1 bits (54), Expect = 6.1
Identities = 4/23 (17%), Positives = 6/23 (26%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
Y A+N G +
Sbjct: 323 NYTLLAANPFGQASASIMAAFMD 345
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 41.5 bits (97), Expect = 1e-05
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLL--DIQGPLFRIEPPYRFEFSNESGGRLDC-A 103
+Y C ++ G+ S + + + L + + P ++ E + R A
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 104 AQGSPTPKIEWL 115
+ S K+ ++
Sbjct: 132 EKLSGNAKVNYI 143
Score = 36.5 bits (84), Expect = 7e-04
Identities = 10/78 (12%), Positives = 17/78 (21%), Gaps = 9/78 (11%)
Query: 47 VYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES---GG-- 98
Y + + S V + R + P+ E+ +
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 239
Query: 99 RLDCAAQGSPTP-KIEWL 115
L C I W
Sbjct: 240 LLKCKVANIKKETHIVWY 257
Score = 28.8 bits (64), Expect = 0.33
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
+Y ++ G SR + +A
Sbjct: 290 IYEVILKDDRGKDKSRLKLVDEA 312
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 40.9 bits (96), Expect = 2e-05
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 17/78 (21%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSN----ESGG- 98
+TVY+ RA+N+ G + + L+++ P +I P E G
Sbjct: 73 DATVYQVRATNQGGSVSGT----------ASLEVEVPA-KIHLPKTLEGMGAVHALRGEV 121
Query: 99 -RLDCAAQGSPTPKIEWL 115
+ G P P I W
Sbjct: 122 VSIKIPFSGKPDPVITWQ 139
Score = 29.7 bits (67), Expect = 0.16
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C G P P ++W
Sbjct: 23 TLVCKVTGHPKPIVKWY 39
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 40.7 bits (95), Expect = 2e-05
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGR--LD 101
S Y+C A ++S + +K V + P + P E G +
Sbjct: 155 QSQDYQCSALMGGRKVMSISIRLK----VQKVIPGPPALTLVPA---ELVRIRGEAAQIV 207
Query: 102 CAAQGSPTPKIEWL 115
C+A +L
Sbjct: 208 CSASSVDVNFDVFL 221
Score = 35.3 bits (81), Expect = 0.002
Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 44 HSTVYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC 102
++ YRC + + ++VK + + F ++ L C
Sbjct: 62 NTGTYRCTEPGDPLGGSAAIHLYVKD---------PARPWNVLAQEVVVFEDQD-ALLPC 111
Query: 103 AAQG-SPTPKIEWL 115
+ +
Sbjct: 112 LLTDPVLEAGVSLV 125
Score = 24.5 bits (53), Expect = 9.3
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVI-LSRFVHVK 67
H+ Y C ASN G S F V
Sbjct: 256 HAGNYSCVASNVQGKHSTSMFFRVV 280
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 40.6 bits (95), Expect = 3e-05
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 47 VYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
Y C A++ G ++ ++ P F + + + C +
Sbjct: 77 RYDCEAASRIGGHQKSMYLDIEYA----------PKFISNQTIYYSWEGNPI-NISCDVK 125
Query: 106 GSPTPKIEWL 115
+P I W
Sbjct: 126 SNPPASIHWR 135
Score = 30.2 bits (68), Expect = 0.14
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A+G P P+I W
Sbjct: 19 TLVCDAEGEPIPEITWK 35
Score = 25.2 bits (55), Expect = 6.3
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 44 HSTVYRCRASNEAGVILSRF 63
Y C A+N G +
Sbjct: 169 DFGRYNCTATNHIGTRFQEY 188
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 39.9 bits (92), Expect = 6e-05
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP--LFRIEPPYRFEFSNESGGRLD 101
+ + C A+ E + + L + L + P + + S
Sbjct: 338 NGRSFSCSATLEVAG------QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 391
Query: 102 CAAQGSPTPKIEWL 115
C A G+P P+++ L
Sbjct: 392 CQAWGNPLPELKCL 405
Score = 32.9 bits (74), Expect = 0.015
Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 10/114 (8%)
Query: 2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
++ L R + + + + + H + CR +
Sbjct: 119 LTVVLL-RGEKEL-KREPAVGEPAEVTTTVLVRRDH------HGANFSCRTELDLRPQGL 170
Query: 62 RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PTPKIEW 114
+ + L P + ++ G + C+ G P + +
Sbjct: 171 ELFENTS-APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Score = 29.1 bits (64), Expect = 0.36
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 10/37 (27%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
Y CRA + G + +++ P
Sbjct: 424 LEGTYLCRARSTQG----------EVTREVTVNVLSP 450
Score = 27.5 bits (60), Expect = 0.91
Identities = 7/74 (9%), Positives = 16/74 (21%), Gaps = 10/74 (13%)
Query: 42 DVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD 101
D + C + + + I + E S + +
Sbjct: 255 DEGTQRLTCAVILGNQ----------SQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVK 304
Query: 102 CAAQGSPTPKIEWL 115
C A + +
Sbjct: 305 CEAHPRAKVTLNGV 318
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 39.5 bits (91), Expect = 7e-05
Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 19/109 (17%)
Query: 13 VIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVKAGSV 71
+ + + RI+ L F P + Y C N F + V
Sbjct: 65 INFRLPENRISKEKDVLWFRPTLLN------DTGNYTCMLRNTTYCSKVAFPLEVVQ--- 115
Query: 72 VSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA-----AQGSPTPKIEWL 115
++ P + R+ C S P I W
Sbjct: 116 ----KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY 160
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 39.1 bits (90), Expect = 8e-05
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 48 YRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQ 105
Y C+ + + + A SVV + P + + G + C
Sbjct: 105 YWCQVAQWSI---RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161
Query: 106 GSPTPKIEW 114
+ W
Sbjct: 162 DCANANVTW 170
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 38.9 bits (90), Expect = 9e-05
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPL-FRIEPPYRFEFSNESGGRLDC 102
C+ +E+ + + V L + P I + ++ L C
Sbjct: 188 DGKNVTCKVEHESFEK-PQLLTVN-------LTVYYPPEVSISGYDNNWYLGQNEATLTC 239
Query: 103 AAQGSPTP-KIEWL 115
A+ +P P W
Sbjct: 240 DARSNPEPTGYNWS 253
Score = 32.4 bits (73), Expect = 0.022
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 10/70 (14%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQ 105
Y C S + L + + + + E C +
Sbjct: 93 NYTCLFVTFPQGSRSVDIW---------LRVLAKPQNTAEVQKVQLTGEPVPMARCVSTG 143
Query: 106 GSPTPKIEWL 115
G P +I W
Sbjct: 144 GRPPAQITWH 153
Score = 28.5 bits (63), Expect = 0.41
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 6/37 (16%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57
L+ P + +T C +N G
Sbjct: 262 FAVAQGAQLLIRPVDKP------INTTLICNVTNALG 292
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 39.0 bits (90), Expect = 1e-04
Identities = 14/92 (15%), Positives = 21/92 (22%), Gaps = 18/92 (19%)
Query: 25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFR 83
P E H C + L++Q P
Sbjct: 192 VISRYRLVPSREA------HQQSLACIVNYHMDRFKESLT----------LNVQYEPEVT 235
Query: 84 IEPPYRFEFSNESGGRLDCAAQGSPTP-KIEW 114
IE + +L C A +P + W
Sbjct: 236 IEGFDGNWYLQRMDVKLTCKADANPPATEYHW 267
Score = 29.7 bits (66), Expect = 0.20
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG-RLDC-AA 104
VY C + +++ + + + R + + C +A
Sbjct: 106 VYICEFATFPTGNRESQLNLTV-----MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSA 160
Query: 105 QGSPTPKIEW 114
G P + W
Sbjct: 161 NGKPPSVVSW 170
Score = 26.6 bits (58), Expect = 2.1
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 11/45 (24%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQ-GPLFRIEPP 87
+ Y C A+N G S ++I
Sbjct: 295 LAGTYICEATNPIG----------TRSGQVEVNITEAAALEHHHH 329
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 36.9 bits (85), Expect = 4e-04
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 18/68 (26%)
Query: 48 YRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS 107
Y C ++ + + A S LL QG L +
Sbjct: 83 YICEVEDQKEEVQLLVFGLTANSDTHLL--QG----------------QSLTLTLESPPG 124
Query: 108 PTPKIEWL 115
+P ++
Sbjct: 125 SSPSVQCR 132
Score = 28.4 bits (63), Expect = 0.36
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 100 LDCAAQGSPTPKIEWL 115
L C A + + W
Sbjct: 15 LTCTASQKKSIQFHWK 30
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 37.1 bits (85), Expect = 5e-04
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 18/69 (26%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
Y C ++ + + A S LL QG L +
Sbjct: 81 TYICEVEDQKEEVQLLVFGLTANSDTHLL--QG----------------QSLTLTLESPP 122
Query: 107 SPTPKIEWL 115
+P ++
Sbjct: 123 GSSPSVQCR 131
Score = 30.5 bits (68), Expect = 0.11
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 44 HSTVYRCRASNEAGVI-LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES---GGR 99
S + C + + V A S + + ++E + F+ E G
Sbjct: 153 DSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGE 212
Query: 100 LDCAAQGSPTPK 111
L A+ + + K
Sbjct: 213 LWWQAERASSSK 224
Score = 28.2 bits (62), Expect = 0.64
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A + + W
Sbjct: 13 ELTCTASQKKSIQFHWK 29
Score = 27.5 bits (60), Expect = 1.1
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 23/71 (32%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S + G + + V+ +V + Q L C
Sbjct: 268 GSGNLTLALEAKTGKL-HQEVN-----LVVMRATQLQK-----------------NLTCE 304
Query: 104 AQGSPTPKIEW 114
G +PK+
Sbjct: 305 VWGPTSPKLML 315
Score = 25.1 bits (54), Expect = 7.6
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 42 DVHSTVYRCRASNEAGVILSRFVHV 66
+ + +++C S+ V+L + V
Sbjct: 337 NPEAGMWQCLLSDSGQVLLESNIKV 361
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 37.0 bits (85), Expect = 5e-04
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 40 RPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEP-PYRFEFSNESGG 98
P+ + + C A+ E + L + GP P + + S
Sbjct: 149 TPEDNGRSFSCSATLEVA-----GQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 203
Query: 99 RLDCAAQGSPTPKIEWL 115
C A G+P P+++ L
Sbjct: 204 TPMCQAWGNPLPELKCL 220
Score = 30.0 bits (67), Expect = 0.13
Identities = 7/67 (10%), Positives = 14/67 (20%), Gaps = 10/67 (14%)
Query: 48 YRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS 107
C + V++ P + P E + + C A
Sbjct: 76 LTCAVILGNQ-------SQETLQTVTIYSFPAPNVILTKPEVSEGTE---VTVKCEAHPR 125
Query: 108 PTPKIEW 114
+
Sbjct: 126 AKVTLNG 132
Score = 25.0 bits (54), Expect = 7.0
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 10/37 (27%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
Y CRA + G + +++ P
Sbjct: 239 LEGTYLCRARSTQGEVTREVT----------VNVLSP 265
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 36.8 bits (85), Expect = 5e-04
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 11/72 (15%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S Y C + + + VKA P + + C
Sbjct: 67 DSGEYHCVYHFVSAPKANATIEVKAA----------PDI-TGHKRSENKNEGQDAMMYCK 115
Query: 104 AQGSPTPKIEWL 115
+ G P P+ W
Sbjct: 116 SVGYPHPEWMWR 127
Score = 27.1 bits (60), Expect = 1.2
Identities = 7/23 (30%), Positives = 8/23 (34%), Gaps = 3/23 (13%)
Query: 47 VYRCRASNEAGVILSRF---VHV 66
Y C A+N G V V
Sbjct: 168 EYECNATNSIGSASVSTVLRVRV 190
Score = 25.6 bits (56), Expect = 3.4
Identities = 3/16 (18%), Positives = 4/16 (25%)
Query: 99 RLDCAAQGSPTPKIEW 114
L C S +
Sbjct: 22 TLQCNLTSSSHTLMYS 37
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 35.4 bits (82), Expect = 7e-04
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C+ +G+P P+I WL
Sbjct: 30 VLQCSVRGTPVPRITWL 46
Score = 25.4 bits (56), Expect = 3.3
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 47 VYRCRASNEAGVI 59
Y C A N G +
Sbjct: 78 TYTCLAENALGQV 90
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 35.0 bits (81), Expect = 9e-04
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R+D G P P + W
Sbjct: 24 RMDFKVSGLPAPDVSWY 40
Score = 25.7 bits (57), Expect = 2.5
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
Y C A N AG + V A
Sbjct: 76 AYACVAKNRAGEATFTVQLDVLA 98
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 34.9 bits (81), Expect = 0.001
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ QG P P + WL
Sbjct: 24 IMSIRVQGEPKPVVSWL 40
Score = 27.6 bits (62), Expect = 0.49
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKA 68
Y C+A NE G + V+
Sbjct: 76 FYTCKAVNEYGARQCEARLEVRG 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 36.2 bits (83), Expect = 0.001
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
H RC A + + S +K + + P+ + ++ + C
Sbjct: 157 HRLCVRCAAQRDGTWLHSDKFTLKVREAIKAI----PVVSVPETSHLLKKGDT-FTVVCT 211
Query: 104 AQGSPTP-KIEWL 115
+ T WL
Sbjct: 212 IKDVSTSVNSMWL 224
Score = 35.1 bits (80), Expect = 0.002
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 13/71 (18%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
+ Y C SN + FV A LF + P F + + C
Sbjct: 68 RTGTYTCSNSNGLTSSIYVFVRDPA-----------KLFLVGLPL-FGKEDSD-ALVRCP 114
Query: 104 AQGSPTPKIEW 114
+
Sbjct: 115 LTDPQVSQYSL 125
Score = 25.1 bits (54), Expect = 5.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 44 HSTVYRCRASNEAGV 58
S V+ C A+N G
Sbjct: 263 DSGVFMCYANNTFGS 277
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 35.7 bits (82), Expect = 0.001
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
VYRC + A + + P +I S L C A+G
Sbjct: 94 VYRCM-----------ISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEG 142
Query: 107 SPTPKIEWL 115
P ++ W
Sbjct: 143 YPKAEVIWT 151
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.7 bits (80), Expect = 0.001
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 52 ASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQGSPT 109
+S +G L++ V ++ + P R+ R + + G L QG P
Sbjct: 2 SSGSSGT-LAQPVTIRE-------IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPR 53
Query: 110 PKIEWL 115
P++ W
Sbjct: 54 PQVVWT 59
Score = 25.8 bits (57), Expect = 2.2
Identities = 3/24 (12%), Positives = 7/24 (29%), Gaps = 1/24 (4%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
S Y E + + ++
Sbjct: 90 DSGEYELSVQIENMKD-TATIRIR 112
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 35.5 bits (81), Expect = 0.001
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 35 PETGFR-PDV---HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRF 90
+ GF P ++ + C A S +V ++ + + P +
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMY------IVVVVGYRIYDVVLSPSHGI 115
Query: 91 EFSNESGGRLDCAAQGSPTPKIEW 114
E S L+C A+ I++
Sbjct: 116 ELSVGEKLVLNCTARTELNVGIDF 139
Score = 24.8 bits (53), Expect = 9.2
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 44 HSTVYRCRASNEAGVI-LSRFVHV 66
+Y C AS+ S FV V
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVRV 205
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 35.4 bits (81), Expect = 0.001
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
YRC A +++ VK + E +L C A+G
Sbjct: 81 QYRCLVICGAAWD-YKYLTVKVK----------ASYMRIDTRILEVPGTGEVQLTCQARG 129
Query: 107 SPTPKIEWL 115
P ++ W
Sbjct: 130 YPLAEVSWQ 138
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 34.7 bits (80), Expect = 0.002
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R+DC G PTP + W
Sbjct: 28 RMDCKVSGLPTPDLSWQ 44
Score = 25.8 bits (57), Expect = 2.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 47 VYRCRASNEAGVI 59
+Y C A+N AG
Sbjct: 80 IYTCIATNRAGQN 92
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 9/78 (11%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQ---GPLFRIEPPY-----RFEFSNESGG 98
Y + + S V V + + R + P+ +E + E
Sbjct: 75 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 134
Query: 99 RLDCAAQGSPTP-KIEWL 115
L C I W
Sbjct: 135 LLKCKVANIKKETHIVWY 152
Score = 28.7 bits (64), Expect = 0.36
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 100 LDCAAQGSPTPKIEWL 115
A + S K+ ++
Sbjct: 23 WMQAEKLSGNAKVNYI 38
Score = 27.2 bits (60), Expect = 1.0
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
+Y ++ G SR + +A
Sbjct: 185 IYEVILKDDRGKDKSRLKLVDEA 207
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 34.8 bits (80), Expect = 0.002
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 12/72 (16%)
Query: 45 STVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCA 103
S + + NE + V+ P F + R DC
Sbjct: 16 SPINANKVENEDAFL----------EEVAEEKPHVKPYFTKTILDMEVVEGSAA-RFDCK 64
Query: 104 AQGSPTPKIEWL 115
+G P P++ W
Sbjct: 65 VEGYPDPEVMWF 76
Score = 26.0 bits (57), Expect = 2.4
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 47 VYRCRASNEAGVILSR 62
Y C+A N G
Sbjct: 112 KYTCKAVNSLGEATCT 127
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 34.0 bits (78), Expect = 0.002
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ C A G+P P + WL
Sbjct: 27 KFRCPAGGNPMPTMRWL 43
Score = 26.3 bits (58), Expect = 1.5
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 47 VYRCRASNEAGVI 59
Y C NE G I
Sbjct: 79 NYTCVVENEYGSI 91
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 35.0 bits (80), Expect = 0.002
Identities = 10/73 (13%), Positives = 16/73 (21%), Gaps = 14/73 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
Y C E + +H P + E+ L C
Sbjct: 60 QWGEYSCVFLPEPMGTANIQLHGP------------PRVKAVKSSEHINEGET-AMLVCK 106
Query: 104 AQGSP-TPKIEWL 115
++ P W
Sbjct: 107 SESVPPVTDWAWY 119
Score = 26.9 bits (59), Expect = 1.5
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 44 HSTVYRCRASNEAG 57
YRC ++ G
Sbjct: 158 DPGQYRCNGTSSKG 171
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 33.9 bits (78), Expect = 0.002
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R C G P P + WL
Sbjct: 33 RFSCDTDGEPVPTVTWL 49
Score = 25.8 bits (57), Expect = 2.2
Identities = 3/13 (23%), Positives = 3/13 (23%)
Query: 47 VYRCRASNEAGVI 59
Y N G
Sbjct: 84 NYSVVVENSEGKQ 96
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 33.9 bits (78), Expect = 0.003
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+L+C P PK+ W
Sbjct: 34 KLECQISAIPPPKLFWK 50
Score = 27.0 bits (60), Expect = 0.82
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKA 68
Y A NEAGV + V A
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTA 109
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 33.4 bits (77), Expect = 0.003
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ A G P P W
Sbjct: 25 KFAVKATGEPRPTAIWT 41
Score = 27.3 bits (61), Expect = 0.69
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKA 68
+Y C N AG + S + +KA
Sbjct: 76 LYTCTVKNSAGSVSSSCKLTIKA 98
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 33.1 bits (76), Expect = 0.004
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ CA G PTP++ W
Sbjct: 24 TVACAFTGEPTPEVTWS 40
Score = 26.5 bits (59), Expect = 1.1
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKA 68
+Y NE G + +H+++
Sbjct: 77 LYTLSLGNEFGSDSATVNIHIRS 99
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 33.5 bits (77), Expect = 0.004
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ C A G+P P+I W
Sbjct: 29 EVSCTASGNPPPQIMWF 45
Score = 28.8 bits (65), Expect = 0.17
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR-F 63
W +DN + + + N +L E +Y C+A + G F
Sbjct: 44 WF-KDNETLVEDSGIVLKDGNRNLTIRRVRKE-------DEGLYTCQACSVLGCAKVEAF 95
Query: 64 VHVKA 68
++
Sbjct: 96 FIIEG 100
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 33.5 bits (77), Expect = 0.004
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C G+P PKI W
Sbjct: 27 TFTCRVAGNPKPKIYWF 43
Score = 25.4 bits (56), Expect = 3.6
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKA 68
Y A+N G I + V+A
Sbjct: 80 NYTIMAANPQGRISCTGRLMVQA 102
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 33.1 bits (76), Expect = 0.005
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L+ G+P P W
Sbjct: 21 NLEVDFIGAPDPTATWT 37
Score = 25.4 bits (56), Expect = 3.1
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVK 67
Y+ + NE G + F V V+
Sbjct: 72 NYKLKVKNELGEDEAIFEVIVQ 93
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 33.1 bits (76), Expect = 0.005
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A G P P I WL
Sbjct: 27 LLKCKATGDPLPVISWL 43
Score = 27.7 bits (62), Expect = 0.38
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 13/57 (22%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST---VYRCRASNEAGVI 59
WL ++ G+L ++ + Y C A++ +G
Sbjct: 42 WL-KEGFTFPGRDPRATIQEQGTLQIK---------NLRISDTGTYTCVATSSSGET 88
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 33.9 bits (77), Expect = 0.005
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDC-A 103
Y+C+ GV +F+ L + + S E G +L C
Sbjct: 98 TYQCKVKKAPGVANKKFL----------LTVLVKPSGTRCF--VDGSEEIGNDFKLKCEP 145
Query: 104 AQGSPTPKIEWL 115
+GS + EW
Sbjct: 146 KEGSLPLQFEWQ 157
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 33.0 bits (76), Expect = 0.005
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 99 RLDCAAQGSPTPKIEWL 115
G P P+ EW
Sbjct: 24 HFRVRVVGKPDPECEWY 40
Score = 28.0 bits (63), Expect = 0.36
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKA 68
+A N AG S F+ V+A
Sbjct: 76 SIMVKAINIAGETSSHAFLLVQA 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 33.1 bits (76), Expect = 0.006
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C G P P + W
Sbjct: 32 ELKCVVLGEPPPVVVWE 48
Score = 25.8 bits (57), Expect = 2.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 47 VYRCRASNEAGVILSR 62
VY CRA N AG +
Sbjct: 83 VYVCRARNAAGEAYAA 98
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 32.8 bits (75), Expect = 0.006
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C P+P+I W+
Sbjct: 29 TLTCEVPAQPSPQIHWM 45
Score = 27.0 bits (60), Expect = 0.78
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV 66
+ L+ P Y C A++ + SR V +
Sbjct: 55 PSPVLILPEIGPQ------DQGTYSCVATHSSHGPQESRAVSI 91
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 32.7 bits (75), Expect = 0.007
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R Q PT +++W
Sbjct: 27 RFILNVQSKPTAEVKWY 43
Score = 26.5 bits (59), Expect = 1.5
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 47 VYRCRASNEAGVILSR-FVHVKAG 69
YR +N G + V G
Sbjct: 78 TYRAVCTNYKGEASDYATLDVTGG 101
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 33.1 bits (75), Expect = 0.008
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A GSP P+I+W
Sbjct: 40 ELHCEAVGSPVPEIQWW 56
Score = 26.5 bits (58), Expect = 1.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 47 VYRCRASNEAGVILS----RFVHVKAGSVVSLLD 76
Y CRASN+ R V+A +VV +L+
Sbjct: 104 TYECRASNDPDRNHLTRAPRVKWVRAQAVVLVLE 137
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.4 bits (75), Expect = 0.011
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
Y C+A +++ + V + + E +N + + C
Sbjct: 199 QYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVA--KFLCRQS 256
Query: 106 GSPTPKIEW 114
+
Sbjct: 257 SGENCDVVV 265
Score = 30.0 bits (66), Expect = 0.17
Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 10/73 (13%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGR--LD 101
+ Y C A ++ + + V P +G +
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNE--------ESTIPRSPTVVKGVAGSSVAVL 352
Query: 102 CAAQGSPTPKIEW 114
C + I++
Sbjct: 353 CPYNRKESKSIKY 365
Score = 27.3 bits (59), Expect = 1.5
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
Y+C + VSL QGP + + ++C +
Sbjct: 89 RYKCGLGINSR---------GLSFDVSLEVSQGPGL-LNDTKVYTVDLGRTVTINCPFKT 138
Query: 107 SPTPKIEWL 115
K + L
Sbjct: 139 ENAQKRKSL 147
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.4 bits (74), Expect = 0.012
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A GSP P I W
Sbjct: 27 VLSCVATGSPVPTILWR 43
Score = 30.1 bits (68), Expect = 0.084
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W +D +++ L NG L + Y C AS +G
Sbjct: 42 WR-KDGVLVSTQDSRIKQLENGVLQIRYAKLG------DTGRYTCIASTPSGEA------ 88
Query: 66 VKAGSVVSLLDIQGPLFRIEPP 87
+ + +++Q ++PP
Sbjct: 89 ----TWSAYIEVQEFGVPVQPP 106
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 32.0 bits (73), Expect = 0.012
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 96 SGGRLDCAAQGSPTPKIEWL 115
+ +G+P P ++W
Sbjct: 17 HHWCIPFTVKGNPKPALQWF 36
Score = 25.1 bits (55), Expect = 3.5
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 47 VYRCRASNEAG 57
Y A NE G
Sbjct: 76 DYTLIAKNEYG 86
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 32.9 bits (74), Expect = 0.012
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 4 LLWLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
+LW ++ I +D + L F E S Y C +
Sbjct: 143 ILWQ-HNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSGYYVCYPRGSKPEDANF 196
Query: 63 FVHVKA 68
+++++A
Sbjct: 197 YLYLRA 202
Score = 29.1 bits (64), Expect = 0.29
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 21/87 (24%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSL-----------------LDIQGPLFRIEP-PY 88
+Y+C+ S L + + + D + I PY
Sbjct: 63 MYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY 122
Query: 89 RFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ S + L C P +I W
Sbjct: 123 KVSISGTT-VILTCPQ--YPGSEILWQ 146
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 31.9 bits (73), Expect = 0.017
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L G+ W+
Sbjct: 26 ELFGKVTGTQPITCTWM 42
Score = 24.2 bits (53), Expect = 9.3
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 44 HSTVYRCRASNEAG 57
H Y N+ G
Sbjct: 74 HCGCYTLLVENKLG 87
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 31.7 bits (71), Expect = 0.017
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
W D + D I L F E S Y C + +++
Sbjct: 38 WQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSGYYVCYPRGSKPEDANFYLY 92
Query: 66 VKA 68
++A
Sbjct: 93 LRA 95
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 32.0 bits (72), Expect = 0.018
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
RLD G P P + W
Sbjct: 37 RLDVPISGDPAPTVIWQ 53
Score = 25.9 bits (56), Expect = 3.0
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 1/21 (4%)
Query: 47 VYRCRASNEAGVILSRFVHVK 67
VY N G + VK
Sbjct: 117 VYTVTVKNPVGED-QVNLTVK 136
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 31.2 bits (71), Expect = 0.019
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C A GSP P +W
Sbjct: 22 VLQCVAVGSPIPHYQWF 38
Score = 30.0 bits (68), Expect = 0.055
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
H Y C N+ S+ V +
Sbjct: 61 HQGTYWCHVYNDRDSQDSKKVEI 83
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 31.7 bits (72), Expect = 0.036
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 6 WLIRDNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57
W+ N + + +++ NG L F VY C A E
Sbjct: 279 WVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE------DGGVYTCYAMGETF 325
Score = 24.8 bits (54), Expect = 8.6
Identities = 4/37 (10%), Positives = 8/37 (21%), Gaps = 2/37 (5%)
Query: 81 LFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
F + G + C + K+
Sbjct: 245 FFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVS 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.039
Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 58/158 (36%)
Query: 7 LIRDNTVIAYVKDLRIALSNGSLMFPPFPETGF--RPDVHSTVYRCRASNE--------- 55
L+ + V + + L + L+ F E + D+H+ + N+
Sbjct: 71 LVEPSKVGQFDQVLNLCLTE-------F-ENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 56 ------AGVILSR----------FVHVKAGSVVSLLDI---QGP----------LFRIEP 86
A ++ R F V G+ L+ I QG L++
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGN-AQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 87 PYRFEFSNESGGRL-DCAAQGSPTPKI--------EWL 115
+ S L + K+ EWL
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Score = 31.6 bits (71), Expect = 0.051
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 32/135 (23%)
Query: 9 RDNTVIAYVKDLRIALSNGSLMF----PPFPETGFRPDVH-----STVYRCRA--SNEAG 57
+ N+ + K + I+L NG+ PP G + S + + R S
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 58 VILSRFV------H----VKAGSVVSLLDIQGPLFRIEP-----PYRFEFSNESGGRLDC 102
+RF+ H V A ++ D+ P + G L
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLI-NKDLVKNNVSFNAKDIQIPV---YDTFDGSDL-R 469
Query: 103 AAQGSPTPKI-EWLI 116
GS + +I + +I
Sbjct: 470 VLSGSISERIVDCII 484
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 31.6 bits (71), Expect = 0.041
Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 22 IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPL 81
I SNGSL+F VY ++E V V+ +Q
Sbjct: 66 IIYSNGSLLFQMITMK------DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119
Query: 82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
++ + S I+WL
Sbjct: 120 TTVKELDSVTLTCLSND---------IGANIQWL 144
Score = 27.3 bits (60), Expect = 1.1
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 5 LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
WL ++ + + + ++ +N L P + Y+C SN V S +
Sbjct: 142 QWL-FNSQSLQLTERMTLSQNNSILRIDPIKRE------DAGEYQCEISNPVSVRRSNSI 194
Query: 65 HV 66
+
Sbjct: 195 KL 196
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 30.6 bits (69), Expect = 0.044
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 97 GGRLDCAAQGSPTPKIEWL 115
++ +G+P P + WL
Sbjct: 22 EHCIEFVVRGNPPPTLHWL 40
Score = 25.2 bits (55), Expect = 3.9
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 8 IRDNTVIAYVKDLRIALSNGSLMFP-PFPETGFRPDVHSTVYRCRASNEAG 57
+R++ +I +S G L+F P ++ Y A N G
Sbjct: 46 LRESKIIHVEYYQEGEISEGCLLFNKPTHY-------NNGNYTLIAKNPLG 89
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 30.7 bits (69), Expect = 0.059
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 31/122 (25%)
Query: 4 LLWLIRDNTVIAYVKDLRIA---------LSNGSLMFPPFPETGFRPDVHSTVYRCRASN 54
+ W R +T++A K L+NG L S Y +
Sbjct: 30 VRW-ERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD------DSGTYNVTVYS 82
Query: 55 EAG-VILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIE 113
G IL++ + ++ +VS +P +E SN + L C +++
Sbjct: 83 TNGTRILNKALDLRILEMVS-----------KPMIYWECSNAT---LTCEVLEGTDVELK 128
Query: 114 WL 115
Sbjct: 129 LY 130
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 30.6 bits (69), Expect = 0.066
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 22/114 (19%)
Query: 3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG-VILS 61
+ ++ ++ NG+L +Y+ + G +L
Sbjct: 43 KIAQFRKEKETFKEKDTYKL-FKNGTLKIKHLKTD------DQDIYKVSIYDTKGKNVLE 95
Query: 62 RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
+ +K IQ + +P + N + L C P++
Sbjct: 96 KIFDLK---------IQERV--SKPKISWTCINTT---LTCEVMNGTDPELNLY 135
Score = 24.5 bits (53), Expect = 8.3
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 44 HSTVYRCRASNEAG 57
S ++C A N+
Sbjct: 156 LSAKFKCTAGNKVS 169
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 30.6 bits (69), Expect = 0.068
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ C P+ I W
Sbjct: 37 NITCEVFAYPSATISWF 53
Score = 25.2 bits (55), Expect = 5.9
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 44 HSTVYRCRASNEAG 57
Y C A N G
Sbjct: 87 DFGNYNCTAVNRIG 100
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 30.3 bits (68), Expect = 0.091
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 14/73 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC- 102
S YRC+ S L+I ++ R E L C
Sbjct: 59 DSGEYRCQRGLS------------GRSDPIQLEIHRGWLLLQVSSRVFTEGEP-LALRCH 105
Query: 103 AAQGSPTPKIEWL 115
A + + +
Sbjct: 106 AWKDKLVYNVLYY 118
Score = 28.7 bits (64), Expect = 0.39
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG 79
S +Y C A+ E G +L R S L + G
Sbjct: 234 DSGLYWCEAATEDGNVLKR-------SPELELQVLG 262
Score = 28.0 bits (62), Expect = 0.58
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 19/72 (26%)
Query: 44 HSTVYRCRASNEAG------------------VILSRFVHVKAGSVVSLL-DIQGPLFRI 84
H+ Y C + + S + G++V+L + + L R
Sbjct: 142 HNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRP 201
Query: 85 EPPYRFEFSNES 96
F F S
Sbjct: 202 GLQLYFSFYMGS 213
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 29.4 bits (66), Expect = 0.12
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQ-GSPTPKIEW 114
+ +E + C A+ SP + W
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVW 45
Score = 26.3 bits (58), Expect = 1.3
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF---VHV 66
R NG L +P + Y C SN + V V
Sbjct: 56 RAMDFNGILTIR-----NVQPS-DAGTYVCTGSNMFAMDQGTATLHVQV 98
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 28.8 bits (65), Expect = 0.15
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 12/67 (17%)
Query: 6 WLIRDNTVIAYVKDLRIALSNG--SLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR 62
W + + I +G L YRC+ N+ G S
Sbjct: 36 WY-FGVRQLENSEKYEITYEDGVAILYVKDITKL-------DDGTYRCKVVNDYGEDSSY 87
Query: 63 -FVHVKA 68
+ VK
Sbjct: 88 AELFVKG 94
Score = 26.1 bits (58), Expect = 1.8
Identities = 2/18 (11%), Positives = 6/18 (33%), Gaps = 1/18 (5%)
Query: 99 RLDCAAQGSPTP-KIEWL 115
+ C + ++ W
Sbjct: 20 KYVCKIENYDQSTQVTWY 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.17
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 40/104 (38%)
Query: 1 MYVLLWLIRD---NTVIAYVKDL----------RIA-------------------LSNGS 28
L W + V +V+++ I L N +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 29 LMFPPFPETGFRPDVHSTVYRC--RASNEAGVILSRFVHVKAGS 70
+F + + R + + + V+ + GS
Sbjct: 124 QVFAKYNVS--RLQPYLKLRQALLELRPAKNVL----IDGVLGS 161
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 28.6 bits (63), Expect = 0.35
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
++ Y+ + + S V L++ + I P F S+++ L
Sbjct: 63 NAGSYKVTVQDTDTMTSVE-------SEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115
Query: 104 AQ---GSPTPKIEWL 115
+ G L
Sbjct: 116 VKFSGGKTPADNYEL 130
Score = 28.6 bits (63), Expect = 0.43
Identities = 6/71 (8%), Positives = 20/71 (28%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
+ VY + E+ + + +++ + + +
Sbjct: 156 KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215
Query: 104 AQGSPTPKIEW 114
+ G P I++
Sbjct: 216 SSGMPNLTIKY 226
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 28.6 bits (64), Expect = 0.38
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
HS Y C + + S+ V +
Sbjct: 145 HSGDYHCTGNIGYTLFSSKPVTIT 168
Score = 28.2 bits (63), Expect = 0.44
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 14/73 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S Y C+ + LS VH L + ++ P+ E+ L C
Sbjct: 62 DSGEYTCQTGQTS---LSDPVH---------LTVLFEWLVLQTPHLEFQEGET-IMLRCH 108
Query: 104 AQGSPTP-KIEWL 115
+ K+ +
Sbjct: 109 SWKDKPLVKVTFF 121
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 27.7 bits (62), Expect = 0.42
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 21 RIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVK 67
R ++ + P S +Y C S+ +G + F V+V
Sbjct: 48 RTRITGEEVEVQDSVPA-------DSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 26.2 bits (58), Expect = 1.3
Identities = 5/17 (29%), Positives = 7/17 (41%), Gaps = 1/17 (5%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+L C + I WL
Sbjct: 22 QLRCRLRDDV-QSINWL 37
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 27.7 bits (62), Expect = 0.45
Identities = 2/17 (11%), Positives = 4/17 (23%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C + + W
Sbjct: 32 TFRCRISPANYEPVHWF 48
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 28.2 bits (62), Expect = 0.51
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C+ G +P W
Sbjct: 20 SLTCSTTGCESPFFSWR 36
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 28.2 bits (62), Expect = 0.60
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
+ YRC E GV +S + +
Sbjct: 234 DAGKYRCMIRTEGGVGISNYAEL 256
Score = 26.7 bits (58), Expect = 1.9
Identities = 10/80 (12%), Positives = 19/80 (23%), Gaps = 7/80 (8%)
Query: 37 TGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES 96
+ F P+ + ++ S G + V V E +
Sbjct: 128 STFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP-------CTRTPHFLRIQNVEVNAGQ 180
Query: 97 GGRLDCAAQGSPTPKIEWLI 116
C+A G +
Sbjct: 181 FATFQCSAIGRTVAGDRLWL 200
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 27.9 bits (62), Expect = 0.62
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 9/60 (15%)
Query: 10 DNTVIAYVKD---LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66
D + Y KD L+ N ++ S Y C S +++
Sbjct: 114 DVYKVIYYKDGEALKYWYENHNISITNATVE------DSGTYYCTGKVWQLDYESEPLNI 167
Score = 27.2 bits (60), Expect = 1.2
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 14/72 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S Y+C+ S L++ ++ + L C
Sbjct: 62 DSGEYKCQHQQ------------VNESEPVYLEVFSDWLLLQASAEVVMEGQP-LFLRCH 108
Query: 104 AQ-GSPTPKIEW 114
K+ +
Sbjct: 109 GWRNWDVYKVIY 120
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 28.1 bits (62), Expect = 0.64
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 10/70 (14%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQ 105
Y C S + L + + + + E C +
Sbjct: 92 SYTCLFVTFPQGSRSVDIW---------LRVLAKPQNTAEVQKVQLTGEPVPMARCVSTG 142
Query: 106 GSPTPKIEWL 115
G P +I W
Sbjct: 143 GRPPAQITWH 152
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 27.6 bits (61), Expect = 0.69
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 100 LDCAAQGSPTPKIEWL 115
+ + G P P + WL
Sbjct: 20 IPFSVDGQPAPSLRWL 35
Score = 25.3 bits (55), Expect = 4.0
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 47 VYRCRASNEAGVI 59
Y A+N G
Sbjct: 77 NYTLLAANPFGQA 89
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 27.6 bits (61), Expect = 0.71
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
Y C F V + P I E + R+ C+ G
Sbjct: 79 TYECVVLKYEK---DAFKREHLAEVTLSVKADFPTPSISDF---EIPTSNIRRIICSTSG 132
Query: 107 -SPTPKIEWL 115
P P + WL
Sbjct: 133 GFPEPHLSWL 142
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 27.5 bits (61), Expect = 0.73
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
S Y CR + + S V++
Sbjct: 148 DSGSYFCRGLVGSKNVSSETVNI 170
Score = 26.4 bits (58), Expect = 2.0
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 14/73 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S YRC+ + LS V L++ ++ P + L C
Sbjct: 65 DSGEYRCQTNLST---LSDPVQ---------LEVHIGWLLLQAPRWVFKEEDP-IHLRCH 111
Query: 104 AQ-GSPTPKIEWL 115
+ + K+ +L
Sbjct: 112 SWKNTALHKVTYL 124
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 27.1 bits (60), Expect = 0.77
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
WL RD + V+ R ++ + P S +Y C S+ +G + F
Sbjct: 42 WL-RDGVQL--VESNRTRITGEEVEVR-----DSIPA-DSGLYACVTSSPSGSDTTYF 90
Score = 25.5 bits (56), Expect = 2.8
Identities = 5/17 (29%), Positives = 7/17 (41%), Gaps = 1/17 (5%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+L C + I WL
Sbjct: 28 QLRCRLRDDV-QSINWL 43
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 27.2 bits (60), Expect = 0.91
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
L + GP I + G++ C + +P P +I W
Sbjct: 9 LTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWS 49
Score = 26.4 bits (58), Expect = 1.6
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKAGSVVS 73
T+Y C A N G + + +
Sbjct: 88 FQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 118
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 27.5 bits (60), Expect = 1.0
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 6/70 (8%)
Query: 47 VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQ 105
Y C A + + ++ + + + C +
Sbjct: 91 DYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSV-----MEDSAQEIATCNSRN 145
Query: 106 GSPTPKIEWL 115
G+P PKI W
Sbjct: 146 GNPAPKITWY 155
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 27.4 bits (60), Expect = 1.1
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 48 YRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQG 106
Y C + +L++++ + + + G L+C +
Sbjct: 98 YLC------------YFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGW 145
Query: 107 SPTPKIEWL 115
P P+I+W
Sbjct: 146 YPQPQIQWS 154
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 27.0 bits (59), Expect = 1.1
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 99 RLDCAAQGSPTPKIEW 114
L+C A+ I++
Sbjct: 27 VLNCTARTELNVGIDF 42
Score = 24.3 bits (52), Expect = 9.2
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 43 VHSTVYRCRASNEAGVI-LSRFVHVKA 68
+Y C AS+ S FV V
Sbjct: 84 SDQGLYTCAASSGLMTKKNSTFVRVHE 110
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 27.4 bits (61), Expect = 1.2
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 62 RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
F + + + R + + C A G P P I WL
Sbjct: 367 EFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWL 420
Score = 24.7 bits (54), Expect = 8.7
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 6 WLIRDNTVIAYVKDLRIA-LSNGSLMFPP--FPETGFRPDVHSTVYRCRASNEAG 57
WL +++ + R+ +G+L + G Y C A+N G
Sbjct: 419 WLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNG--------TYLCIAANAGG 465
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 27.1 bits (59), Expect = 1.5
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 9/111 (8%)
Query: 5 LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
+ L+R + + + + R D H + CR +
Sbjct: 121 VVLLRGEKEL-KREPAVGEPAEVTTTVLV------RRDHHGANFSCRTELDLRPQGLELF 173
Query: 65 HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PTPKIEW 114
+ L P + ++ G + C+ G P + +
Sbjct: 174 E-NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 26.8 bits (59), Expect = 1.5
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPY 88
S Y CR + + S V + ++ + PP
Sbjct: 148 DSGSYFCRGLVGSKNVSSETVQIT----ITQGLAVSTISSFFPPG 188
Score = 25.2 bits (55), Expect = 5.9
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 14/73 (19%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
S YRC+ LS V L++ ++ P + L C
Sbjct: 65 DSGEYRCQTQLS---TLSDPVQ---------LEVHIGWLLLQAPRWVFKEEDP-IHLRCH 111
Query: 104 AQGSPTP-KIEWL 115
+ + K+ +L
Sbjct: 112 SWKNTALHKVTYL 124
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 27.1 bits (60), Expect = 1.6
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 98 GRLDCAAQGSPTPKIEWL 115
C S P + W
Sbjct: 500 ANFYCRVIASSPPVVTWH 517
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 25.7 bits (56), Expect = 2.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 47 VYRCRASNEAGVILSRF 63
YRC S + S F
Sbjct: 86 SYRCEVSTKDKFDCSNF 102
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 25.7 bits (56), Expect = 2.5
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 47 VYRCRASNEAGVILSRF-VHVKA 68
YRC + + F + V
Sbjct: 89 NYRCEVTYKDKFDSCSFDLEVHE 111
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 25.4 bits (55), Expect = 3.3
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 99 RLDCAAQGSPTPKIEW 114
C+A S + +
Sbjct: 29 SFTCSAASSSDSPMTF 44
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 25.2 bits (54), Expect = 6.4
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 40 RPDVHSTVYRCRASNEAG 57
RP+ H T C+ +
Sbjct: 184 RPEDHGTNLTCQMKRQGA 201
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 25.2 bits (54), Expect = 6.5
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 18/72 (25%)
Query: 47 VYRCRASNEAG-VILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
+Y C + +++ + V + E P ++ C+ Q
Sbjct: 98 IYTCEIRLKNESMVMKKPVELWVLP--------------EEPRDLRVRVGDTTQMRCSIQ 143
Query: 106 GSPTP---KIEW 114
+ K+ W
Sbjct: 144 STEEKRVTKVNW 155
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 24.6 bits (53), Expect = 8.3
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 99 RLDCAAQGSPTPKIEWL 115
L C ++WL
Sbjct: 20 TLKCVTSLRKNSSLQWL 36
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 24.9 bits (54), Expect = 8.6
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 42 DVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLL 75
+ TV C V L F+ KA SVV LL
Sbjct: 61 PLGETVLECYNCGCRNVFLLGFIPAKADSVVVLL 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.442
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,814,330
Number of extensions: 95395
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 354
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)