RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11568
(116 letters)
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 33.1 bits (74), Expect = 0.002
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
Y+C A AGV SR + +
Sbjct: 69 DEGHYQCFAETPAGVASSRVISFR 92
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 33.0 bits (74), Expect = 0.002
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
+ Y C+ + +S+ V +
Sbjct: 65 DAGRYWCQVEDGGETEISQPVWLT 88
Score = 23.0 bits (48), Expect = 8.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+L+C+ +G P I+W+
Sbjct: 15 KLNCSVEGMEEPDIQWV 31
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 31.8 bits (71), Expect = 0.006
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
+ Y+C A+N G ++SR ++
Sbjct: 73 DAGSYQCVATNARGTVVSREASLR 96
Score = 27.9 bits (61), Expect = 0.13
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 79 GPLFRIEPP--YRFEFSNESGGRLDCAAQGSPTPKIEWL 115
GP+F +P E S E L C A+ +P W
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWK 42
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 30.4 bits (67), Expect = 0.016
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
+ YRC E GV +S + +
Sbjct: 71 DAGKYRCMIRTEGGVGISNYAEL 93
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 29.8 bits (66), Expect = 0.029
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
+ C A G+P P + WL
Sbjct: 24 KFRCPAGGNPMPTMRWL 40
Score = 25.9 bits (56), Expect = 0.77
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 44 HSTVYRCRASNEAGVILSRF 63
Y C NE G I +
Sbjct: 73 DKGNYTCVVENEYGSINHTY 92
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.0 bits (66), Expect = 0.030
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV---HSTVYRCRASNEAG-VILS 61
+D V+ A SN S + P + + Y C A N G + S
Sbjct: 36 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS 95
Query: 62 RFVHVKA 68
V ++A
Sbjct: 96 NAVRMEA 102
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 29.5 bits (65), Expect = 0.034
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKA 68
S +Y+C A N+ G + + + V+A
Sbjct: 64 DSGMYQCVAENKHGTVYASAELTVQA 89
Score = 24.8 bits (53), Expect = 1.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 99 RLDCAAQGSPTPKIEW 114
R C A G P P + W
Sbjct: 20 RWSCVASGKPRPAVRW 35
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 29.3 bits (65), Expect = 0.035
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
P + +P + C G P P + W
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 37
Score = 26.6 bits (58), Expect = 0.38
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHV 66
Y CRA+NE G V V
Sbjct: 65 DKGYYGCRATNEHGDKYFETLVQV 88
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 28.7 bits (63), Expect = 0.081
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKA 68
Y C+A N G + V+
Sbjct: 76 DDAKYTCKAVNSLGEATCTAELLVET 101
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 28.3 bits (62), Expect = 0.10
Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVK 67
Y N G + F + ++
Sbjct: 66 DEGNYSVVVENSEGKQEAEFTLTIQ 90
Score = 25.2 bits (54), Expect = 1.3
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
R C G P P + WL
Sbjct: 18 RFSCDTDGEPVPTVTWL 34
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 27.9 bits (61), Expect = 0.12
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 44 HSTVYRCRASNEAGVILSRF---VHVK 67
Y C A N+AG + V K
Sbjct: 74 DEAEYVCIAENKAGEQDASIHLKVFAK 100
Score = 25.6 bits (55), Expect = 1.1
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 99 RLDCAAQGSPTPKIEW 114
L C A G P P + W
Sbjct: 24 TLVCDADGFPEPTMSW 39
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 27.9 bits (61), Expect = 0.12
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKA 68
Y C A N G + + + A
Sbjct: 66 DEGTYECEAENIKGRDTYQGRIIIHA 91
Score = 25.9 bits (56), Expect = 0.75
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
P + + P L+C A G+P P+I+W
Sbjct: 5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 40
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 27.5 bits (60), Expect = 0.20
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSR-FVHVKA 68
S +A N AG S F+ V+A
Sbjct: 72 DSASIMVKAINIAGETSSHAFLLVQA 97
Score = 24.8 bits (53), Expect = 2.0
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
++ P E S G P P+ EW
Sbjct: 2 MEAPKI-FERIQSQTVGQGSDAHFRVRVVGKPDPECEW 38
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 27.2 bits (59), Expect = 0.23
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 9/37 (24%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
HS Y C + + S+ V + +Q P
Sbjct: 60 HSGDYHCTGNIGYTLYSSKPVT---------ITVQAP 87
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor
tyro3, second domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 26.9 bits (58), Expect = 0.34
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
ST++ C A N G+ SR V
Sbjct: 60 QSTMFSCEAHNLKGLASSRTATVH 83
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.9 bits (58), Expect = 0.40
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
+ YRC A+ ++ +I S +
Sbjct: 76 DNGSYRCSANFQSNLIESHSTTL 98
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 26.9 bits (58), Expect = 0.42
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 44 HSTVYRCRASNEAG-VILSRFVHVKAGSVVSLLDIQG 79
S Y C+A N G + S H+ L++ G
Sbjct: 78 DSGEYYCQAQNGYGTAMRSEAAHMD----AVELNVGG 110
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 26.5 bits (57), Expect = 0.48
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKA 68
+ YRC S + S F + V
Sbjct: 83 FTGGYRCEVSTKDKFDCSNFNLTVHE 108
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 26.2 bits (56), Expect = 0.61
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVK 67
YRC ++ G + + V+
Sbjct: 77 DPGQYRCNGTSSKGSDQAIITLRVR 101
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 25.8 bits (55), Expect = 0.83
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 40 RPDVHSTVYRCRASNEAGVILSRF-VHVKA 68
T+Y C A N G + +
Sbjct: 77 VRADFQTIYNCTAWNSFGSDTEIIRLKEQG 106
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 25.6 bits (55), Expect = 0.93
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVK 67
Y RA N G ++V
Sbjct: 68 DKGEYTVRAKNSYGTKEEIVFLNVT 92
Score = 23.7 bits (50), Expect = 4.1
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 99 RLDCAAQGSPTPKIEW 114
C S P + W
Sbjct: 20 NFYCRVIASSPPVVTW 35
>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.7 bits (55), Expect = 0.98
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 100 LDCAAQGSPTPKIEW 114
+ +G+P P ++W
Sbjct: 21 IPFTVKGNPKPALQW 35
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 25.6 bits (55), Expect = 1.00
Identities = 2/16 (12%), Positives = 5/16 (31%)
Query: 99 RLDCAAQGSPTPKIEW 114
+ C +P +
Sbjct: 22 MIYCMYGSNPMGYPNY 37
Score = 24.9 bits (53), Expect = 1.6
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
VY C N G + +
Sbjct: 72 DEGVYTCEVDNGVGKPQKHSLKLT 95
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 25.6 bits (55), Expect = 1.1
Identities = 3/16 (18%), Positives = 4/16 (25%)
Query: 99 RLDCAAQGSPTPKIEW 114
L G+ W
Sbjct: 19 ELFGKVTGTQPITCTW 34
Score = 25.2 bits (54), Expect = 1.3
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVKA 68
H Y N+ G ++ + V
Sbjct: 67 HCGCYTLLVENKLGSRQAQVNLTVVD 92
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 25.7 bits (55), Expect = 1.1
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C P I+W+
Sbjct: 24 EFVCKVYSDAQPHIQWI 40
Score = 24.6 bits (52), Expect = 2.2
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 44 HSTVYRCRASNEAGVILSRF 63
+ Y C A N G+
Sbjct: 85 DAGEYTCLAGNSIGISFHSA 104
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 25.3 bits (54), Expect = 1.2
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVK 67
S Y+ + NE G + F V V+
Sbjct: 69 DSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 23.8 bits (50), Expect = 3.7
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 99 RLDCAAQGSPTPKIEW 114
L+ G+P P W
Sbjct: 21 NLEVDFIGAPDPTATW 36
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 25.3 bits (54), Expect = 1.3
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 44 HSTVYRCRASNEA-GVILSRFVHV 66
YRC A G I + + V
Sbjct: 67 DEGTYRCEGRILARGEINFKDIQV 90
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 24.9 bits (53), Expect = 1.5
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHVK 67
+ Y C SN + +HV+
Sbjct: 65 DAGTYVCTGSNMFAMDQGTATLHVQ 89
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 24.7 bits (53), Expect = 1.8
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 6 WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG-VILSRFV 64
+ L+NG L D S Y + G IL++ +
Sbjct: 39 AEFKRKMKPFLKSGAFEILANGDLKI-----KNLTRD-DSGTYNVTVYSTNGTRILNKAL 92
Query: 65 HVK 67
++
Sbjct: 93 DLR 95
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 25.1 bits (53), Expect = 1.8
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 21 RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 57
R+ S+ + F + Y C S E G
Sbjct: 59 RVTFSSSGITFSSVTRK------DNGEYTCMVSEEGG 89
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.0 bits (53), Expect = 1.8
Identities = 6/24 (25%), Positives = 6/24 (25%), Gaps = 1/24 (4%)
Query: 44 HSTVYRCRASNEAGVILSRF-VHV 66
VY N G V V
Sbjct: 105 DEGVYTVTVKNPVGEDQVNLTVKV 128
Score = 23.9 bits (50), Expect = 5.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 99 RLDCAAQGSPTPKIEWL 115
RLD G P P + W
Sbjct: 28 RLDVPISGDPAPTVIWQ 44
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 24.6 bits (52), Expect = 2.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 99 RLDCAAQGSPTPKIEWL 115
C A G+P P+++ L
Sbjct: 23 TPMCQAWGNPLPELKCL 39
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.2 bits (51), Expect = 3.2
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
S Y C S +++
Sbjct: 60 DSGTYYCTGKVWQLDYESEPLNI 82
>d2pvaa_ d.153.1.3 (A:) Penicillin V acylase {Bacillus sphaericus
[TaxId: 1421]}
Length = 342
Score = 24.6 bits (53), Expect = 3.4
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 15 AYVKDLRIALSNGSLMFPPFPETGFRPDVH 44
V D+ L++ +L+ GF P +H
Sbjct: 124 VTVDDVIEKLTSYTLLNEANIILGFAPPLH 153
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 24.0 bits (50), Expect = 3.7
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 37 TGFRPDVHSTVYRCRASNEAGVI 59
+ + + C A N G+
Sbjct: 75 SEIESRFYKHPFTCFAKNTHGID 97
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.7 bits (50), Expect = 4.8
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 42 DVHSTVYRCRASNEAG 57
D H + CR +
Sbjct: 69 DHHGAQFSCRTELDLR 84
>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 111
Score = 23.9 bits (50), Expect = 5.0
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 44 HSTVYRCRASNEAG 57
Y C A N A
Sbjct: 77 DIYKYVCTAKNAAV 90
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 23.8 bits (50), Expect = 5.8
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 10/44 (22%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPP 87
Y C + + V L ++ P + I P
Sbjct: 92 DEGGYTCFFRDHSYQE-EAAVE---------LKVEDPFYWINPG 125
>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase,
THDP-succinlytransferase, DapD {Mycobacterium bovis
[TaxId: 1765]}
Length = 274
Score = 24.1 bits (52), Expect = 6.0
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 8 IRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 67
+ + ++ +++ P + G D + V A+ + + + VH+
Sbjct: 105 VVPPATVRQ----GAFIARNTVLMPSYVNIGAYVDEGTMV-DTWATVGSCAQIGKNVHLS 159
Query: 68 AGSVVS 73
G +
Sbjct: 160 GGVGIG 165
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.3 bits (49), Expect = 6.1
Identities = 4/23 (17%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 44 HSTVYRCRASNEAGVILSRFVHV 66
Y + N + F++V
Sbjct: 71 DEDEYEMESPNITDTM-KFFLYV 92
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 23.1 bits (48), Expect = 6.4
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 44 HSTVYRCRASNEAG-----VILSRFV-HVK 67
S VY+C + ++++ V VK
Sbjct: 61 DSGVYQCLSEERVKNKTVFQVVAKHVLEVK 90
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 23.5 bits (49), Expect = 6.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
+ +Y+C + E G V+VK
Sbjct: 71 DAGIYKCVVTAEDGTQSEATVNVK 94
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 23.5 bits (49), Expect = 6.8
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 44 HSTVYRCRASNEAGVILSRF---VHVKAGSVVSL 74
+ YRC + + F VH G+ ++
Sbjct: 79 FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 23.0 bits (48), Expect = 7.9
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 100 LDCAAQGSPTPKIEWL 115
+ + G P P + WL
Sbjct: 20 IPFSVDGQPAPSLRWL 35
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 23.1 bits (48), Expect = 8.9
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 10/46 (21%)
Query: 25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV----ILSRFVHV 66
+ G+L + Y C A++ + S+F +
Sbjct: 59 TTGNLYIAKTEAS------DLGNYSCFATSHIDFITKSVFSKFSQL 98
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 22.8 bits (48), Expect = 9.3
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 5 LWLIR---DNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
LWL + +NT+ AY +DL + + R +A
Sbjct: 13 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSAR 72
Query: 62 RFVHVKA 68
V+
Sbjct: 73 LLSAVRR 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.442
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 443,202
Number of extensions: 18183
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 67
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)