BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1157
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 18  NPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQKGLMPAACHQVVLN 77
            P DVVKVRFQ Q   +A G     Y++   A+  IA+ +G   L KG  P      ++N
Sbjct: 123 QPTDVVKVRFQAQA--RAGG--GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178

Query: 78  GVRLGTYQVAEE 89
              L TY + ++
Sbjct: 179 CAELVTYDLIKD 190



 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 19 PLDVVKVRFQLQGELKA--KGLYAVHYKNLFHAFFQIAKHDGFLALQKGLMPAACHQVVL 76
          PLD  KVR Q+QGE +   +   +  Y+ +      + + +G  +L  GL+     Q+  
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80

Query: 77 NGVRLGTYQVAEE 89
            VR+G Y   ++
Sbjct: 81 ASVRIGLYDSVKQ 93


>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
 pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
          Length = 608

 Score = 26.2 bits (56), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 65  GLMPAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYILNN 105
           G+M    H VV NG+   TY      G   G   NV + NN
Sbjct: 356 GIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVMVFNN 396


>pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
           Apo Form
 pdb|2E2N|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
           Apo Form
 pdb|2E2O|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
           Complex With Glucose
 pdb|2E2P|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
           Complex With Adp
 pdb|2E2P|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
           Complex With Adp
 pdb|2E2Q|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
           Complex With Xylose, Mg2+, And Adp
 pdb|2E2Q|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
           Complex With Xylose, Mg2+, And Adp
          Length = 299

 Score = 25.8 bits (55), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 53  IAKHDGFLAL------QKGLMPAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVY 101
           I +HDG +AL      + G++  A    V+ G     +     RGW +  DG+ Y
Sbjct: 91  IIQHDGVIALFAETLGEPGVVVIAGTGSVVEGYNGKEFLRVGGRGWLLSDDGSAY 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,408,621
Number of Sequences: 62578
Number of extensions: 109915
Number of successful extensions: 311
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 5
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)