Query psy1157
Match_columns 148
No_of_seqs 113 out of 1263
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 21:52:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.7E-31 1.3E-35 194.9 13.2 137 2-144 107-246 (303)
2 1okc_A ADP, ATP carrier protei 100.0 5.9E-31 2E-35 193.2 12.7 137 2-144 115-258 (297)
3 2lck_A Mitochondrial uncouplin 100.0 4.3E-31 1.5E-35 194.5 11.0 142 1-144 3-152 (303)
4 1okc_A ADP, ATP carrier protei 100.0 2.9E-30 1E-34 189.5 13.6 142 2-144 10-161 (297)
5 2acm_A Mucin-1; auto-catalytic 37.3 3.3 0.00011 22.3 -1.3 20 44-63 40-59 (66)
6 4b19_A PEPA1; toxin, toxin apo 36.8 15 0.00051 16.8 1.0 21 2-22 6-26 (30)
7 3f2e_A SIRV coat protein; four 33.8 32 0.0011 19.5 2.4 32 41-72 6-41 (100)
8 3tgu_G UQCRQ, mitochondrial ub 28.6 56 0.0019 18.7 2.9 33 57-89 32-64 (81)
9 3fbl_A Putative uncharacterize 25.5 52 0.0018 17.8 2.2 26 46-71 4-33 (82)
10 1bts_A BAND 3 anion transport 16.8 89 0.003 13.6 1.7 18 3-20 7-25 (26)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.97 E-value=3.7e-31 Score=194.88 Aligned_cols=137 Identities=24% Similarity=0.267 Sum_probs=120.6
Q ss_pred chHHHhHHHHhHHHhhccHHHHHHHHHhccccccccccccccCcHHHHHHHHHHhhcHhHhhccchHHHHHHHHhhhHHH
Q psy1157 2 EFIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQKGLMPAACHQVVLNGVRL 81 (148)
Q Consensus 2 ~~~ag~~ag~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~yrG~~~~~~~~~~~~~~~~ 81 (148)
++++|++||+++.++++|+|+||+|+|.+... .....|+++++++++|+++||++|||||+.+++++.+++.+++|
T Consensus 107 ~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f 182 (303)
T 2lck_A 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182 (303)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHH
Confidence 47899999999999999999999999998642 12357899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCC-CCChhHHHHHHHHHHHHHhHHHhcCcHH-HHHHHHhcCC-CCcccccccc
Q psy1157 82 GTYQVAEERGWTMGP-DGNVYILNNIAVGLMAGGAGAFLGSPIL-LKISLAIQRG-HCSSIMSTLP 144 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ag~~~~~~~~P~d-vk~r~q~~~~-~~~~~~~~~~ 144 (148)
..||.+|+ .+.+. ....+...++++|++||++++++++|+| +|+|||.+.. .|++++||++
T Consensus 183 ~~ye~~k~--~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~ 246 (303)
T 2lck_A 183 VTYDLIKD--TLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCAL 246 (303)
T ss_dssp HHHHHHHH--TTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHH
T ss_pred HHHHHHHH--HHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHH
Confidence 99999999 44432 2345567889999999999999999999 9999999864 5889988875
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=5.9e-31 Score=193.21 Aligned_cols=137 Identities=20% Similarity=0.321 Sum_probs=119.0
Q ss_pred chHHHhHHHHhHHHhhccHHHHHHHHHhccccccccccccccCcHHHHHHHHHHhhcHhHhhccchHHHHHHHHhhhHHH
Q psy1157 2 EFIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQKGLMPAACHQVVLNGVRL 81 (148)
Q Consensus 2 ~~~ag~~ag~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~yrG~~~~~~~~~~~~~~~~ 81 (148)
++++|++||+++.++++|+|+||+|+|.+... ......|+++++++++++++||++|||||+.+++++.+++++++|
T Consensus 115 ~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 191 (297)
T 1okc_A 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGK---GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS---STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHhccccC---CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHH
Confidence 47899999999999999999999999998531 122357899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCChhHHHHHHHHHHHHHhHHHhcCcHH-HHHHHHhcCC------CCcccccccc
Q psy1157 82 GTYQVAEERGWTMGPDGNVYILNNIAVGLMAGGAGAFLGSPIL-LKISLAIQRG------HCSSIMSTLP 144 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d-vk~r~q~~~~------~~~~~~~~~~ 144 (148)
..||.+|+ .+.+.. +.+....+++|++||++++++++|+| +|+|||++.. .|++++||++
T Consensus 192 ~~ye~~k~--~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~ 258 (297)
T 1okc_A 192 GVYDTAKG--MLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWR 258 (297)
T ss_dssp HHHHHHHH--SSCGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHH
T ss_pred HHHHHHHH--HhccCC-CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHH
Confidence 99999999 554322 34567788999999999999999999 9999998753 4888888875
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.97 E-value=4.3e-31 Score=194.51 Aligned_cols=142 Identities=24% Similarity=0.389 Sum_probs=121.4
Q ss_pred CchHHHhHHHHhHHHhhccHHHHHHHHHhccccccc--cccccccCcHHHHHHHHHHhhcHhHhhccchHHHHHHHHhhh
Q psy1157 1 MEFIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAK--GLYAVHYKNLFHAFFQIAKHDGFLALQKGLMPAACHQVVLNG 78 (148)
Q Consensus 1 ~~~~ag~~ag~~~~~~~~Pld~vk~~~q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~G~~g~yrG~~~~~~~~~~~~~ 78 (148)
.++++|++||+++.++++|+|+||+|+|.+...... ......|+++++++++++++||++|||||+.+++++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998642110 012356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCChhHHHHHHHHHHHHHhHHHhcCcHH-HHHHHHhcCC-----CCcccccccc
Q psy1157 79 VRLGTYQVAEERGWTMGPDGNVYILNNIAVGLMAGGAGAFLGSPIL-LKISLAIQRG-----HCSSIMSTLP 144 (148)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d-vk~r~q~~~~-----~~~~~~~~~~ 144 (148)
++|++||.+|+ .+.+.....+....+++|++||++++++++|+| +|+|||++.. .|+++++|++
T Consensus 83 i~f~~ye~~k~--~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 152 (303)
T 2lck_A 83 VRIGLYDSVKQ--FYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYK 152 (303)
T ss_dssp HTTTHHHHHHH--HHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH--HHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHH
Confidence 99999999999 444332245678899999999999999999999 9999999863 5788888775
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=2.9e-30 Score=189.49 Aligned_cols=142 Identities=21% Similarity=0.273 Sum_probs=118.1
Q ss_pred chHHHhHHHHhHHHhhccHHHHHHHHHhccccccccccccccCcHHHHHHHHHHhhcHhHhhccchHHHHHHHHhhhHHH
Q psy1157 2 EFIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQKGLMPAACHQVVLNGVRL 81 (148)
Q Consensus 2 ~~~ag~~ag~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~yrG~~~~~~~~~~~~~~~~ 81 (148)
++++|++||+++.++++|+|+||+|+|.+..... ......|+++++++++++++||++|||||+.+++++.+++.+++|
T Consensus 10 ~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 88 (297)
T 1okc_A 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNF 88 (297)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999864211 112357899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCC-CC--hhHHHHHHHHHHHHHhHHHhcCcHH-HHHHHHhcCC------CCcccccccc
Q psy1157 82 GTYQVAEERGWTMGPD-GN--VYILNNIAVGLMAGGAGAFLGSPIL-LKISLAIQRG------HCSSIMSTLP 144 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~ag~~~~~~~~P~d-vk~r~q~~~~------~~~~~~~~~~ 144 (148)
+.||.+|+.+....+. .. .+....+++|++||++++++++|+| +|+|||++.. .|+++++|++
T Consensus 89 ~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 89 AFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHH
T ss_pred HHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHH
Confidence 9999999842222111 11 2346789999999999999999999 9999999842 4788888765
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=37.27 E-value=3.3 Score=22.33 Aligned_cols=20 Identities=40% Similarity=0.748 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHHhhcHhHhh
Q psy1157 44 KNLFHAFFQIAKHDGFLALQ 63 (148)
Q Consensus 44 ~~~~~~~~~i~~~~G~~g~y 63 (148)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999988876
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=36.84 E-value=15 Score=16.83 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=16.4
Q ss_pred chHHHhHHHHhHHHhhccHHH
Q psy1157 2 EFIMGGTAAAGAAFFTNPLDV 22 (148)
Q Consensus 2 ~~~ag~~ag~~~~~~~~Pld~ 22 (148)
+.++-.++|++-++++|-++.
T Consensus 6 ~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 6 HIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp SSTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 456778899998888887763
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=33.80 E-value=32 Score=19.54 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=22.2
Q ss_pred cccCcHHHHHHHHHHhhcH----hHhhccchHHHHH
Q psy1157 41 VHYKNLFHAFFQIAKHDGF----LALQKGLMPAACH 72 (148)
Q Consensus 41 ~~~~~~~~~~~~i~~~~G~----~g~yrG~~~~~~~ 72 (148)
+++.++-+-+..++.+-|+ +..|+|+...+.|
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 6677777777777777776 4688888777665
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=28.56 E-value=56 Score=18.67 Aligned_cols=33 Identities=6% Similarity=-0.088 Sum_probs=24.1
Q ss_pred hcHhHhhccchHHHHHHHHhhhHHHHHHHHHhh
Q psy1157 57 DGFLALQKGLMPAACHQVVLNGVRLGTYQVAEE 89 (148)
Q Consensus 57 ~G~~g~yrG~~~~~~~~~~~~~~~~~~~~~~~~ 89 (148)
.|+...+|-+...++..+|...+.+.+|++.++
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~ 64 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQ 64 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 345555666667777788888888888888776
No 9
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=25.53 E-value=52 Score=17.79 Aligned_cols=26 Identities=23% Similarity=0.168 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhcHh----HhhccchHHHH
Q psy1157 46 LFHAFFQIAKHDGFL----ALQKGLMPAAC 71 (148)
Q Consensus 46 ~~~~~~~i~~~~G~~----g~yrG~~~~~~ 71 (148)
+.-.++++.+++|+. |+|-.++-.++
T Consensus 4 lrlaikeicktdgipnikwgmyiafgekll 33 (82)
T 3fbl_A 4 LRLAIKEICKTDGIPNIKWGMYIAFGEKLL 33 (82)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCcchhHHHHHHHHHHH
Confidence 455789999999974 55554444444
No 10
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=16.78 E-value=89 Score=13.61 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=8.9
Q ss_pred hHHHhHHHHhHHHh-hccH
Q psy1157 3 FIMGGTAAAGAAFF-TNPL 20 (148)
Q Consensus 3 ~~ag~~ag~~~~~~-~~Pl 20 (148)
+++.+++|++-.++ ..|+
T Consensus 7 i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 7 LISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 45667777764444 5554
Done!