RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1157
(148 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 68.4 bits (168), Expect = 5e-16
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 3 FIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLAL 62
+ GG A A AA T PLDVVK R Q ++ YK + F +I K +G L
Sbjct: 9 LLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSR-----KYKGILDCFKKIYKEEGIRGL 63
Query: 63 QKGLMPAACHQVVLNGVRLGTY 84
KGL+P + GTY
Sbjct: 64 YKGLLPNLLRVAPAAAIYFGTY 85
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 31.3 bits (71), Expect = 0.16
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 6 GGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQKG 65
GG A A + PLD + R L ++ G + LF +I+K GFL+L +G
Sbjct: 120 GGLAGASSLLIVYPLDFARTR--LASDIGKGG--DREFTGLFDCLMKISKQTGFLSLYQG 175
Query: 66 LMPAACHQVVLNGVRLGTYQVAEE 89
+ +V G G Y A+
Sbjct: 176 FGVSVQGIIVYRGAYFGLYDSAKA 199
Score = 29.4 bits (66), Expect = 0.57
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 EFIMGGTAAAGAAFFTNPLDVVKVRFQLQG---ELKAKGLYAVHYKNLFHAFFQIAKHDG 58
+F+MGG +AA + P++ VK+ Q Q E+K G Y + + F +++K G
Sbjct: 10 DFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIK-SGKVP-RYSGIVNCFRRVSKEQG 67
Query: 59 FLALQKGLM 67
L+L +G
Sbjct: 68 VLSLWRGNT 76
Score = 29.4 bits (66), Expect = 0.73
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 8 TAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQKG 65
T AG + P D V+ R + KAK + Y + +I K++G KG
Sbjct: 221 TILAGLISY--PFDTVRRRMMMMSGRKAKS--EIQYTGTLDCWKKILKNEGLGGFFKG 274
>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane].
Length = 1531
Score = 30.6 bits (69), Expect = 0.28
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 46 LFHAFFQIAKHDGFLALQKGLMPAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYILNN 105
L A F++ DG L +Q+GL ++ + + G YQ E T P G YIL+
Sbjct: 1171 LAGAEFELQDEDGTL-VQEGLTTDENGKINVTDLAPGDYQFVE----TKAPTG--YILDA 1223
Query: 106 IAVG 109
Sbjct: 1224 TPTP 1227
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 29.9 bits (67), Expect = 0.46
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 4 IMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQ 63
I GG A A F T P+DV+K R + G K+ +IA+ +G+L
Sbjct: 184 ICGGLAGGIAGFLTTPVDVIKSRQIIYG------------KSYIETVTEIAE-EGYLTFY 230
Query: 64 KG 65
KG
Sbjct: 231 KG 232
>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
Length = 307
Score = 28.6 bits (65), Expect = 0.97
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 84 YQVAEERGWTMGPDGNVY 101
++A E+GWT+ PDG+ +
Sbjct: 133 ERLAAEKGWTIKPDGDYF 150
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 27.9 bits (62), Expect = 2.5
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 88 EERGWTMGPDGNVYILNNIAVGLMAGGAGAFLGSPILLKISLAIQRG-HCSSI 139
+++GW D G GAF G I LKI A+ R CS+I
Sbjct: 423 DDKGWEYKVDE---------------GGGAFYGPKIDLKIEDALGRKWQCSTI 460
>gnl|CDD|220553 pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN8. This PCI_Csn8
domain is conserved from plants to humans. It is a
signature protein motif found in components of CSN (COP9
signalosome). It functions as a structural scaffold for
subunit-subunit interactions within the complex and is a
key regulator of photomorphogenic development.
Length = 144
Score = 26.9 bits (60), Expect = 3.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 85 QVAEERGWTMGPDGNVYILNN 105
+ A++RGWT+ DG + N
Sbjct: 117 KFAKKRGWTLDSDGRILPPNP 137
>gnl|CDD|240091 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B
FMN-binding domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
Length = 296
Score = 27.5 bits (62), Expect = 3.0
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 1 MEFIMGGTAAA--GAAFFTNPLDVVKVRFQLQGELKAKGLYAV 41
+EF+M G +A G A F +P ++ L+ L +G+ ++
Sbjct: 247 LEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKSI 289
>gnl|CDD|107306 cd06311, PBP1_ABC_sugar_binding_like_3, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 274
Score = 26.2 bits (58), Expect = 7.3
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 68 PAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYIL-NNIAVGLMAG 113
A Q V + G + V +RG + ++Y+ +N +G +AG
Sbjct: 71 SAPLTQPVAKAKKAGIFVVVVDRGLSSPGAQDLYVAGDNYGMGRVAG 117
>gnl|CDD|132862 cd07223, Pat_PNPLA5-mammals, Patatin-like phospholipase domain
containing protein 5. PNPLA5, also known as GS2L
(GS2-like), plays a role in regulation of adipocyte
differentiation. PNPLA5 is expressed in brain tissue in
high mRNA levels and low levels in liver tissue. There
is no concrete evidence in support of the enzymatic
activity of GS2L. This family includes patatin-like
proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like
phospholipase domain-containing protein 5) reported
exclusively in mammals.
Length = 405
Score = 26.0 bits (57), Expect = 8.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 41 VHYKNLFHAFFQIAKHDGFLALQKGLMPAA-------CHQVVLNGVRLGTYQVAEERGWT 93
+H N F+A FQI+ + FL L K L+P C Q L+ +R E RG T
Sbjct: 204 LHELNAFNASFQISTRNFFLGL-KCLIPPKPEVVADNCRQGYLDALRF-----LERRGLT 257
Query: 94 MGP 96
P
Sbjct: 258 KEP 260
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.422
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,686,521
Number of extensions: 703763
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 30
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)