RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1157
(148 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 133 bits (338), Expect = 2e-39
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 1 MEFIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKA--KGLYAVHYKNLFHAFFQIAKHDG 58
++F+ GTAA A T PLD KVR Q+QGE + + + Y+ + + + +G
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 59 FLALQKGLMPAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYILNNIAVGLMAGGAGAF 118
+L GL+ Q+ VR+G Y + + + I + + G G
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSV--KQFYTKGSEHAGIGSRLLAGSTTGALAVA 120
Query: 119 LGSPI-LLKI 127
+ P ++K+
Sbjct: 121 VAQPTDVVKV 130
Score = 86.2 bits (214), Expect = 2e-21
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 3 FIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLAL 62
+ G T A A P DVVKVRFQ Q Y++ A+ IA+ +G L
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG----RRYQSTVEAYKTIAREEGIRGL 163
Query: 63 QKGLMPAACHQVVLNGVRLGTYQVAEER--GWTMGPDGNVYILNNIAVGLMAGGAGAFLG 120
KG P ++N L TY + ++ + D + + AG +
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDD---LPCHFTSAFGAGFCTTVIA 220
Query: 121 SPI 123
SP+
Sbjct: 221 SPV 223
Score = 54.2 bits (131), Expect = 1e-09
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 3 FIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLAL 62
F A +P+DVVK R+ + Y + H + + +G A
Sbjct: 206 FTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ--------YHSAGHCALTMLRKEGPRAF 257
Query: 63 QKGLMPA 69
KG MP+
Sbjct: 258 YKGFMPS 264
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 65.7 bits (161), Expect = 9e-14
Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 5/140 (3%)
Query: 3 FIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLAL 62
F+ GG AAA + P++ VK+ Q+Q K YK + +I K GFL+
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISA-EKQYKGIIDCVVRIPKEQGFLSF 69
Query: 63 QKGLMPAACHQVVLNGVRLGTYQVAEE---RGWTMGPDGNVYILNNIAVGLMAGGAGAFL 119
+G + + ++ G Y N+A G AG
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 129
Query: 120 GSPI-LLKISLAIQRGHCSS 138
P+ + LA G ++
Sbjct: 130 VYPLDFARTRLAADVGKGAA 149
Score = 64.6 bits (158), Expect = 2e-13
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 6/118 (5%)
Query: 2 EFIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLA 61
GG A A + F PLD + R KG + L + +I K DG
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAADV---GKGAAQREFTGLGNCITKIFKSDGLRG 171
Query: 62 LQKGLMPAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYILNNIAVGLMAGGAGAFL 119
L +G + ++ G Y A +G P NV+I+ + + +
Sbjct: 172 LYQGFNVSVQGIIIYRAAYFGVYDTA--KGMLPDPK-NVHIIVSWMIAQTVTAVAGLV 226
Score = 61.5 bits (150), Expect = 3e-12
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 3 FIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLAL 62
+++ T A A + P D V+ R +Q K + Y + +IAK +G A
Sbjct: 213 WMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGAD---IMYTGTVDCWRKIAKDEGPKAF 269
Query: 63 QKGLMP 68
KG
Sbjct: 270 FKGAWS 275
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.017
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 23/100 (23%)
Query: 9 AAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLALQKGLMP 68
+ A + ++VV R G AV L + + + A+ G +
Sbjct: 1772 SLADVMSIESLVEVVFYR----GMTMQV---AVPRDELGRSNYGMI------AINPGRVA 1818
Query: 69 AACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYILN-NIA 107
A+ Q L V +V + GW V I+N N+
Sbjct: 1819 ASFSQEALQYV---VERVGKRTGWL------VEIVNYNVE 1849
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.30
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 6/18 (33%)
Query: 23 VKVRFQLQGELKAKGLYA 40
+K +LQ LK LYA
Sbjct: 22 LK---KLQASLK---LYA 33
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 28.2 bits (62), Expect = 1.1
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 46 LFHAFFQIAKHDGFLALQKGLMPAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYILN- 104
LF +A DG L L + +V VR + + +G L+
Sbjct: 160 LFSHNAVVAMRDGKLCLMWRVGNLRKSHIVEAHVRAQLIK------PRITEEGEYIPLDQ 213
Query: 105 -NIAVGLMAGGAGAFLGSPILL 125
+I VG G FL SPI +
Sbjct: 214 IDIDVGFDKGLDRIFLVSPITI 235
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 26.5 bits (58), Expect = 2.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 83 TYQVAEERGWTMGPDGNVY 101
+ V + GW++ N Y
Sbjct: 5 VHIVGDNTGWSVPSSPNFY 23
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 26.0 bits (58), Expect = 4.8
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 55 KHDGFLALQKGLMPAACHQVVLN-GVR-----LGTYQVAEE 89
H L + M A LN G + LGTY +
Sbjct: 9 HHSSGLVPRGSHMAAPIRFFELNTGAKLPCVGLGTYAMVAT 49
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 25.9 bits (56), Expect = 5.8
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 88 EERGWTMGPDGNVYILNNIAVGLMAGGAGAFLGSPILLKISLAIQRGHC 136
E+ PD +LN + V + GG G +G K + ++ +
Sbjct: 110 EKIKARGLPDNISSVLNKLVVVKLNGGLGTSMGCKG-PKSLIGVRNENT 157
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial
endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis
SP} PDB: 3atg_A
Length = 245
Score = 25.7 bits (57), Expect = 6.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 76 LNGVRLGTYQVAEERGWTMGPDGNVYILNNIAVGLMAGGAGAFLGSP 122
++GV TY A+ RG D +++ N+AVG G + G P
Sbjct: 184 VDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVG------GDWPGYP 224
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 25.6 bits (57), Expect = 7.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 1 MEFIMGGTAAA---GAAFFTNPLDVVKVRFQLQGELKAKGL 38
+E M G A+A G A F +P K+ +L + +
Sbjct: 257 LEMYMAG-ASAVAVGTANFADPFVCPKIIDKLPELMDQYRI 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.422
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,328,468
Number of extensions: 134968
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 19
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)