RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1157
         (148 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 58.2 bits (139), Expect = 2e-11
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 1/117 (0%)

Query: 2   EFIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLA 61
           +F+ GG AAA +     P++ VK+  Q+Q   K        YK +     +I K  GFL+
Sbjct: 9   DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQIS-AEKQYKGIIDCVVRIPKEQGFLS 67

Query: 62  LQKGLMPAACHQVVLNGVRLGTYQVAEERGWTMGPDGNVYILNNIAVGLMAGGAGAF 118
             +G +           +        ++           +           G AGA 
Sbjct: 68  FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 124



 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 3   FIMGGTAAAGAAFFTNPLDVVKVRFQLQGELKAKGLYAVHYKNLFHAFFQIAKHDGFLAL 62
           +++  T  A A   + P D V+ R  +Q   K      + Y      + +IAK +G  A 
Sbjct: 212 WMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGAD---IMYTGTVDCWRKIAKDEGPKAF 268

Query: 63  QKGLMPAACHQVVLNGVRLGTY 84
            KG       + +     L  Y
Sbjct: 269 FKGAWSNVL-RGMGGAFVLVLY 289


>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus)
           [TaxId: 3659]}
          Length = 110

 Score = 26.9 bits (59), Expect = 0.63
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 83  TYQVAEERGWTMGPDGNVY 101
            + V +  GW++    N Y
Sbjct: 5   VHIVGDNTGWSVPSSPNFY 23


>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
           2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 378

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 103 LNNIAVGLMAGGAGAFLGS 121
           L+ + V  + GG G  +G 
Sbjct: 72  LDKLVVLKLNGGLGTTMGC 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 545,233
Number of extensions: 22767
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 7
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)