Query psy11573
Match_columns 248
No_of_seqs 119 out of 405
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 21:58:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 1.1E-86 2.3E-91 572.2 12.3 217 15-231 6-239 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 3.5E-84 7.6E-89 578.2 23.2 222 15-236 2-242 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 2.3E-79 5.1E-84 544.8 22.6 218 15-232 2-236 (236)
4 KOG0841|consensus 100.0 1.5E-77 3.4E-82 527.4 17.9 223 14-236 2-242 (247)
5 PF13424 TPR_12: Tetratricopep 96.3 0.0073 1.6E-07 43.4 4.7 55 138-194 21-75 (78)
6 KOG1840|consensus 92.7 5.1 0.00011 40.1 15.4 176 20-200 205-402 (508)
7 PF12862 Apc5: Anaphase-promot 90.3 1.7 3.8E-05 32.9 7.4 71 122-198 3-74 (94)
8 TIGR00990 3a0801s09 mitochondr 89.3 13 0.00028 37.1 14.7 54 138-193 483-536 (615)
9 PF13414 TPR_11: TPR repeat; P 84.0 4.9 0.00011 27.6 6.1 47 138-193 19-66 (69)
10 KOG1840|consensus 81.6 61 0.0013 32.5 15.3 84 109-205 407-490 (508)
11 COG3947 Response regulator con 81.4 1.3 2.9E-05 41.6 3.0 44 178-226 292-335 (361)
12 PF13374 TPR_10: Tetratricopep 81.0 1.6 3.5E-05 26.9 2.4 23 139-161 19-41 (42)
13 PF07719 TPR_2: Tetratricopept 80.4 3.1 6.8E-05 24.5 3.5 30 17-46 4-33 (34)
14 PF13431 TPR_17: Tetratricopep 78.5 2.4 5.3E-05 26.3 2.6 34 144-186 1-34 (34)
15 KOG2002|consensus 77.2 23 0.00051 38.0 10.7 141 4-197 158-302 (1018)
16 TIGR00990 3a0801s09 mitochondr 76.0 89 0.0019 31.2 16.4 74 138-220 524-597 (615)
17 PF12569 NARP1: NMDA receptor- 73.9 1E+02 0.0022 30.9 14.5 62 131-193 155-222 (517)
18 PF13428 TPR_14: Tetratricopep 71.4 6.8 0.00015 25.2 3.5 30 17-46 4-33 (44)
19 TIGR02917 PEP_TPR_lipo putativ 71.0 1.1E+02 0.0024 30.2 15.4 31 16-46 467-497 (899)
20 PF00515 TPR_1: Tetratricopept 69.9 8.5 0.00018 22.9 3.5 29 18-46 5-33 (34)
21 KOG4162|consensus 68.8 35 0.00076 35.9 9.5 99 87-194 408-507 (799)
22 PF13424 TPR_12: Tetratricopep 67.8 9.5 0.00021 26.9 3.9 38 160-199 1-38 (78)
23 PF13414 TPR_11: TPR repeat; P 67.2 31 0.00068 23.4 6.5 45 17-62 6-50 (69)
24 PF13181 TPR_8: Tetratricopept 66.9 7.7 0.00017 22.9 2.9 29 17-45 4-32 (34)
25 PF13174 TPR_6: Tetratricopept 66.3 9 0.00019 22.2 3.0 30 17-46 3-32 (33)
26 PF13432 TPR_16: Tetratricopep 63.7 38 0.00083 22.8 6.3 54 19-74 2-55 (65)
27 PF14559 TPR_19: Tetratricopep 61.7 36 0.00077 23.0 5.9 44 139-191 8-51 (68)
28 CHL00033 ycf3 photosystem I as 60.2 70 0.0015 26.0 8.3 69 139-216 89-163 (168)
29 PF06552 TOM20_plant: Plant sp 60.1 55 0.0012 28.7 7.8 82 125-213 38-122 (186)
30 smart00028 TPR Tetratricopepti 60.0 19 0.0004 19.0 3.5 30 17-46 4-33 (34)
31 TIGR02917 PEP_TPR_lipo putativ 59.8 1.9E+02 0.004 28.7 15.5 63 13-77 21-83 (899)
32 PF13371 TPR_9: Tetratricopept 58.1 42 0.00091 23.0 5.8 45 139-192 12-56 (73)
33 KOG2076|consensus 55.3 3E+02 0.0065 29.7 16.2 169 9-193 133-308 (895)
34 CHL00033 ycf3 photosystem I as 51.9 53 0.0012 26.7 6.3 50 138-193 51-100 (168)
35 PF14559 TPR_19: Tetratricopep 50.7 63 0.0014 21.7 5.6 53 26-80 3-55 (68)
36 cd02656 MIT MIT: domain contai 48.9 68 0.0015 23.0 5.8 48 16-63 8-60 (75)
37 PF04781 DUF627: Protein of un 48.5 31 0.00067 27.8 4.1 41 112-152 33-74 (111)
38 PRK14574 hmsH outer membrane p 47.5 3.8E+02 0.0082 28.6 17.6 201 19-222 107-398 (822)
39 smart00030 CLb CLUSTERIN Beta 46.4 2.1E+02 0.0047 25.4 11.9 57 20-80 9-73 (206)
40 PF13176 TPR_7: Tetratricopept 45.1 32 0.00069 21.1 3.0 26 17-42 2-27 (36)
41 TIGR02521 type_IV_pilW type IV 44.8 1.6E+02 0.0035 23.5 15.2 57 15-73 32-88 (234)
42 PF12895 Apc3: Anaphase-promot 44.6 33 0.00071 24.6 3.5 13 178-190 71-83 (84)
43 TIGR02795 tol_pal_ybgF tol-pal 43.6 83 0.0018 22.9 5.7 50 139-194 56-105 (119)
44 PRK02603 photosystem I assembl 43.2 93 0.002 25.5 6.5 49 139-193 52-100 (172)
45 PRK15174 Vi polysaccharide exp 42.7 3.9E+02 0.0084 27.3 15.0 29 18-46 114-142 (656)
46 PRK14720 transcript cleavage f 42.1 42 0.00092 36.0 5.1 49 138-196 132-180 (906)
47 PRK12794 flaF flagellar biosyn 41.9 36 0.00078 27.7 3.7 54 174-227 8-61 (122)
48 PF03755 YicC_N: YicC-like fam 40.9 59 0.0013 27.1 5.0 62 140-201 82-147 (159)
49 cd02678 MIT_VPS4 MIT: domain c 40.3 1E+02 0.0023 22.3 5.6 30 13-42 5-34 (75)
50 PRK15363 pathogenicity island 40.2 1.9E+02 0.004 24.6 7.8 72 135-219 82-155 (157)
51 PF13371 TPR_9: Tetratricopept 38.7 49 0.0011 22.6 3.5 27 22-48 3-29 (73)
52 KOG1126|consensus 38.4 3.5E+02 0.0076 28.1 10.7 46 28-73 435-485 (638)
53 PF12688 TPR_5: Tetratrico pep 38.3 1.4E+02 0.0031 23.8 6.7 50 139-194 18-67 (120)
54 PRK10866 outer membrane biogen 37.6 1E+02 0.0023 27.3 6.3 80 139-223 86-176 (243)
55 PRK15179 Vi polysaccharide bio 37.5 5E+02 0.011 27.1 12.0 131 14-196 86-219 (694)
56 smart00745 MIT Microtubule Int 36.8 1.5E+02 0.0032 21.2 6.0 27 16-42 10-36 (77)
57 PF10083 DUF2321: Uncharacteri 36.5 49 0.0011 28.3 3.7 35 31-65 82-116 (158)
58 PF13432 TPR_16: Tetratricopep 35.8 1.2E+02 0.0026 20.3 5.1 46 139-193 14-59 (65)
59 PRK10370 formate-dependent nit 35.5 75 0.0016 27.2 4.9 56 17-74 110-168 (198)
60 PLN03088 SGT1, suppressor of 35.4 1.1E+02 0.0024 28.7 6.3 45 143-191 50-96 (356)
61 PRK11788 tetratricopeptide rep 35.1 3.4E+02 0.0075 24.5 15.6 25 19-43 112-136 (389)
62 PRK12793 flaF flagellar biosyn 34.5 48 0.0011 26.7 3.3 53 174-227 6-59 (115)
63 PRK09782 bacteriophage N4 rece 33.2 6.7E+02 0.015 27.3 15.1 46 139-193 660-705 (987)
64 TIGR03504 FimV_Cterm FimV C-te 33.0 71 0.0015 21.3 3.4 40 168-215 3-42 (44)
65 COG4499 Predicted membrane pro 32.9 84 0.0018 30.7 5.1 47 164-210 231-282 (434)
66 KOG4626|consensus 32.7 6.3E+02 0.014 26.9 12.7 58 136-202 402-465 (966)
67 PRK15359 type III secretion sy 31.8 1.6E+02 0.0035 23.6 6.1 47 138-193 74-120 (144)
68 PLN03088 SGT1, suppressor of 31.8 4.3E+02 0.0094 24.7 9.8 55 18-74 40-94 (356)
69 PF03635 Vps35: Vacuolar prote 31.2 5.6E+02 0.012 27.1 11.2 140 13-177 591-741 (762)
70 PF08631 SPO22: Meiosis protei 30.1 4E+02 0.0088 23.8 9.1 88 138-226 9-99 (278)
71 COG5016 Pyruvate/oxaloacetate 29.9 82 0.0018 31.1 4.5 62 5-73 298-364 (472)
72 TIGR02521 type_IV_pilW type IV 29.8 1.7E+02 0.0036 23.4 5.9 14 178-191 148-161 (234)
73 cd02683 MIT_1 MIT: domain cont 29.1 1.2E+02 0.0026 22.4 4.4 27 16-42 8-34 (77)
74 PHA01810 hypothetical protein 28.7 1.8E+02 0.0039 22.1 5.3 43 27-69 12-54 (100)
75 KOG1126|consensus 28.6 65 0.0014 33.3 3.7 159 18-192 357-550 (638)
76 PRK15331 chaperone protein Sic 28.4 2.8E+02 0.0061 23.8 7.1 97 110-221 57-155 (165)
77 COG1392 Phosphate transport re 28.1 3.5E+02 0.0075 24.0 7.9 94 3-107 66-167 (217)
78 COG4105 ComL DNA uptake lipopr 28.1 2E+02 0.0043 26.5 6.4 80 137-222 74-167 (254)
79 PRK02603 photosystem I assembl 28.0 3.3E+02 0.0072 22.1 8.1 13 139-151 89-101 (172)
80 PRK11447 cellulose synthase su 27.8 8.3E+02 0.018 26.7 15.9 55 19-75 356-410 (1157)
81 PF02436 PYC_OADA: Conserved c 27.8 1E+02 0.0022 27.1 4.4 58 3-65 3-65 (196)
82 cd02682 MIT_AAA_Arch MIT: doma 27.7 82 0.0018 23.5 3.3 26 17-42 9-34 (75)
83 KOG0550|consensus 26.7 2.1E+02 0.0046 28.5 6.7 64 14-79 321-384 (486)
84 cd02684 MIT_2 MIT: domain cont 26.7 2.4E+02 0.0053 20.6 5.7 27 16-42 8-34 (75)
85 PF08335 GlnD_UR_UTase: GlnD P 26.4 1.8E+02 0.0039 23.5 5.4 61 7-73 32-92 (142)
86 PRK10370 formate-dependent nit 26.3 2.2E+02 0.0048 24.3 6.3 11 140-150 91-101 (198)
87 PF15372 DUF4600: Domain of un 26.0 1.1E+02 0.0024 25.3 4.1 44 87-131 58-105 (129)
88 PF13041 PPR_2: PPR repeat fam 25.8 1.9E+02 0.0041 18.6 4.6 36 24-59 13-48 (50)
89 PF05008 V-SNARE: Vesicle tran 25.7 2.5E+02 0.0055 20.0 6.9 38 36-73 7-44 (79)
90 TIGR03302 OM_YfiO outer membra 25.4 4.1E+02 0.0089 22.3 15.2 59 17-76 36-96 (235)
91 COG2956 Predicted N-acetylgluc 24.7 6.3E+02 0.014 24.5 9.3 47 19-65 219-265 (389)
92 TIGR02795 tol_pal_ybgF tol-pal 24.5 2.8E+02 0.006 20.0 7.2 27 19-45 44-70 (119)
93 PF10516 SHNi-TPR: SHNi-TPR; 24.3 69 0.0015 20.7 2.1 37 120-159 2-38 (38)
94 PRK15363 pathogenicity island 23.9 78 0.0017 26.9 2.9 40 8-47 20-68 (157)
95 PF09986 DUF2225: Uncharacteri 23.8 5E+02 0.011 22.7 8.4 60 137-198 92-154 (214)
96 KOG0687|consensus 23.7 3.3E+02 0.0071 26.4 7.2 77 118-197 53-136 (393)
97 PF09577 Spore_YpjB: Sporulati 23.4 2.2E+02 0.0047 25.8 5.8 46 19-64 4-62 (232)
98 PF04518 Effector_1: Effector 23.3 3.4E+02 0.0073 26.4 7.3 74 3-76 191-268 (379)
99 PRK15359 type III secretion sy 23.1 3.9E+02 0.0085 21.3 7.5 33 15-47 25-57 (144)
100 PF08424 NRDE-2: NRDE-2, neces 22.7 5.8E+02 0.013 23.5 8.7 85 138-229 118-212 (321)
101 COG3063 PilF Tfp pilus assembl 22.7 1.5E+02 0.0032 27.2 4.5 46 138-192 85-130 (250)
102 PRK11189 lipoprotein NlpI; Pro 22.5 2.6E+02 0.0056 25.2 6.3 24 28-52 40-63 (296)
103 PF14689 SPOB_a: Sensor_kinase 22.0 81 0.0017 22.2 2.2 17 26-42 35-51 (62)
104 KOG0553|consensus 21.9 2.3E+02 0.0051 26.7 5.8 27 34-61 11-37 (304)
105 PRK11447 cellulose synthase su 21.2 1.1E+03 0.024 25.8 16.4 31 17-47 115-145 (1157)
106 PF06384 ICAT: Beta-catenin-in 21.1 1.6E+02 0.0035 22.3 3.8 43 1-57 1-43 (78)
107 KOG4234|consensus 20.8 1.1E+02 0.0023 27.9 3.2 30 17-46 171-200 (271)
108 cd02681 MIT_calpain7_1 MIT: do 20.6 1.3E+02 0.0029 22.3 3.3 27 16-42 8-34 (76)
109 KOG0547|consensus 20.5 1.1E+02 0.0025 31.0 3.6 40 139-193 132-177 (606)
110 PF08717 nsp8: nsp8 replicase; 20.5 1.2E+02 0.0026 26.8 3.3 38 137-194 14-51 (199)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-86 Score=572.18 Aligned_cols=217 Identities=67% Similarity=0.993 Sum_probs=210.6
Q ss_pred chhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhchhHHHHHHHH
Q psy11573 15 QPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKLEMIRQ 94 (248)
Q Consensus 15 ~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~ 94 (248)
+.-+++|+||+||+||++|++-||.++..+.+||.+|||||||||||+||+||+|||++++++||++.+++..++.+|++
T Consensus 6 E~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~lI~e 85 (268)
T COG5040 6 EDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVELIKE 85 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHHHHH
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh----hHhhh-------------hhHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11573 95 YRTQVRPP----CIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELP 157 (248)
Q Consensus 95 yr~kIe~E----C~eii-------------~eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~ 157 (248)
||++|+.| |.||| .|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|..+||
T Consensus 86 yrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~teLp 165 (268)
T COG5040 86 YRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATTELP 165 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhccCC
Confidence 99999999 99998 69999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhccCCCC
Q psy11573 158 PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGD 231 (248)
Q Consensus 158 pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL~lW~~e~~~~ 231 (248)
||||||||||||||||||||+|++++||.|||+|||+||++||+|||++|+|||+||||||||||+||++.+..
T Consensus 166 PT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~s 239 (268)
T COG5040 166 PTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEYS 239 (268)
T ss_pred CCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986543
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=3.5e-84 Score=578.23 Aligned_cols=222 Identities=72% Similarity=1.051 Sum_probs=210.9
Q ss_pred chhHHHhhHHHHhcCHHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhchhHHHHHH
Q psy11573 15 QPVQQLSHFRFLFRLFSEMVEAMKKVASL-D-VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKLEMI 92 (248)
Q Consensus 15 ~~~~~~a~laeqaeRydDmv~~mK~li~~-~-~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i 92 (248)
+.++++|||++|||||+||+.+||+++++ + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++.+
T Consensus 2 e~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~ 81 (244)
T smart00101 2 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASI 81 (244)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHH
Confidence 35789999999999999999999999997 6 599999999999999999999999999999999998777888888999
Q ss_pred HHHHHHhhhh----hHhhh-------------hhHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhc
Q psy11573 93 RQYRTQVRPP----CIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTE 155 (248)
Q Consensus 93 ~~yr~kIe~E----C~eii-------------~eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~ 155 (248)
++||++|++| |++|| ++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+++
T Consensus 82 ~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~ 161 (244)
T smart00101 82 KEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAE 161 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999 99998 699999999999999999999999999999999999999999999989
Q ss_pred CCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhccCCCCCCCc
Q psy11573 156 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDGKDE 235 (248)
Q Consensus 156 L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL~lW~~e~~~~~~~~ 235 (248)
|||||||||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+|+|||||||||++|+++.++++..+
T Consensus 162 L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~~~ 241 (244)
T smart00101 162 LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGADE 241 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999966554444
Q ss_pred c
Q psy11573 236 E 236 (248)
Q Consensus 236 ~ 236 (248)
.
T Consensus 242 ~ 242 (244)
T smart00101 242 I 242 (244)
T ss_pred h
Confidence 3
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=2.3e-79 Score=544.81 Aligned_cols=218 Identities=60% Similarity=0.944 Sum_probs=205.0
Q ss_pred chhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhchhHHHHHHHH
Q psy11573 15 QPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKLEMIRQ 94 (248)
Q Consensus 15 ~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~ 94 (248)
+.++++||+++|||||+||+++||++++++++||.|||||||+||||+|+++|+|||+|++++++++.+|++..++.+++
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~ 81 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKD 81 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHhhhh----hHhhh-------------hhHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11573 95 YRTQVRPP----CIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELP 157 (248)
Q Consensus 95 yr~kIe~E----C~eii-------------~eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~ 157 (248)
||++|++| |++|| ++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+++||
T Consensus 82 yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~ 161 (236)
T PF00244_consen 82 YKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELP 161 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccC
Confidence 99999999 99998 68999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhccCCCCC
Q psy11573 158 PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDG 232 (248)
Q Consensus 158 pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL~lW~~e~~~~~ 232 (248)
||||+||||+||||||||||+|++++||+||++|||+|+++++++++++|+|+++|||||||||++|+++.++++
T Consensus 162 ~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~~ 236 (236)
T PF00244_consen 162 PTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEEE 236 (236)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977653
No 4
>KOG0841|consensus
Probab=100.00 E-value=1.5e-77 Score=527.36 Aligned_cols=223 Identities=72% Similarity=1.035 Sum_probs=214.8
Q ss_pred hchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhchhHHHHHHH
Q psy11573 14 LQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKLEMIR 93 (248)
Q Consensus 14 ~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~ 93 (248)
.++++++|+|++||+||+||+.+||.+++.+.+||.+|||||||+|||+||++|++||+|++|+||++.+|++.+++.|.
T Consensus 2 ~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i~ 81 (247)
T KOG0841|consen 2 REELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMIK 81 (247)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh----hHhhh--------------hhHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhc
Q psy11573 94 QYRTQVRPP----CIRIL--------------AHNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTE 155 (248)
Q Consensus 94 ~yr~kIe~E----C~eii--------------~eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~ 155 (248)
.||++|+.| |++|+ .+++|||+|||||||||+|||..|++|++++++++++|+.|+++++..
T Consensus 82 ~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~~ 161 (247)
T KOG0841|consen 82 EYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKAE 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 99988 356899999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhccCCCCCCCc
Q psy11573 156 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDGKDE 235 (248)
Q Consensus 156 L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL~lW~~e~~~~~~~~ 235 (248)
|+|||||||||+||||||||||+|.|++||.|||+|||+||.++|++++++|+|||+||||||||||+||++.+++....
T Consensus 162 l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~~~ 241 (247)
T KOG0841|consen 162 LQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEKEA 241 (247)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988775554
Q ss_pred c
Q psy11573 236 E 236 (248)
Q Consensus 236 ~ 236 (248)
+
T Consensus 242 ~ 242 (247)
T KOG0841|consen 242 E 242 (247)
T ss_pred c
Confidence 4
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.33 E-value=0.0073 Score=43.44 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 194 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ 194 (248)
-++|...|++|+++ .+.+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 35799999999999 567899888888888888888777 79999999999998764
No 6
>KOG1840|consensus
Probab=92.74 E-value=5.1 Score=40.06 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=107.8
Q ss_pred HhhHHHHhcCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhhhhhhhHHHHHHH-HHhhhhhhhch--hHHH
Q psy11573 20 LSHFRFLFRLFSEMVEAMKKVASL-------DVELTVEERNLLSVAYKNVIGARRASWRIIS-SIEQKEENKGA--EDKL 89 (248)
Q Consensus 20 ~a~laeqaeRydDmv~~mK~li~~-------~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~-~ieqke~~~~~--~~~~ 89 (248)
++....+.|+|+.++...|+.++. +-..=..-.+-|.+.|-++ +..+.|..+.. ++...+...|. +...
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 467777789999999999998875 1122223444566766653 44566666664 23333333343 2222
Q ss_pred HHHHH----HHH--Hhh-hh--hHhhhhhHHHHHH---HhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11573 90 EMIRQ----YRT--QVR-PP--CIRILAHNVYFRN---TLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELP 157 (248)
Q Consensus 90 ~~i~~----yr~--kIe-~E--C~eii~eskvFy~---KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~ 157 (248)
..+.+ |-+ |.. .+ |..++ .|+.. ..-++---.+.++..-..-..-.+.|...|+.|+.+....+.
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al---~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERAL---EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHH---HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22222 211 111 11 55554 22222 111121222333332223333467899999999999988899
Q ss_pred CCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhc
Q psy11573 158 PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELD 200 (248)
Q Consensus 158 pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld 200 (248)
+.||.-=|+--|+++.|+- +|..++|.++.++|+...-...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred ccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhccc
Confidence 9999999999999999887 79999999999999887755443
No 7
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.28 E-value=1.7 Score=32.91 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=50.9
Q ss_pred ccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy11573 122 HRYLAEFATGTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLA-LNFSVFYYEILNSPDRACRLAKAAFDDAIAE 198 (248)
Q Consensus 122 yRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~pirLgLa-LN~SVF~yEil~~~~~A~~iAk~afd~ai~~ 198 (248)
.+|+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 34554444443 245778888888888777777755555555 778887777 699999999999988888653
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=89.26 E-value=13 Score=37.10 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
.+.|...|++|+.+... ..+.++..+. .++.+..+|+-.++.++|+.+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 46788888888876432 3334333333 355566667767888888887777653
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.03 E-value=4.9 Score=27.63 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILN-SPDRACRLAKAAFD 193 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~-~~~~A~~iAk~afd 193 (248)
-+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 35789999999976 34445577888888777 67 79999998888764
No 10
>KOG1840|consensus
Probab=81.61 E-value=61 Score=32.53 Aligned_cols=84 Identities=21% Similarity=0.180 Sum_probs=63.9
Q ss_pred hHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHH
Q psy11573 109 HNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLA 188 (248)
Q Consensus 109 eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iA 188 (248)
..-.+++.|-.+|+|=- -...|.+.|.++..+. ....|.||--++..+|.+.- |+-+|+.++|++++
T Consensus 407 ~~~~~l~~la~~~~~~k-----------~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELK-----------KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELE 473 (508)
T ss_pred hhhHHHHHHHHHHHHhc-----------ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHH
Confidence 33456666666664411 2346899999999999 78999999999999999875 66689999999999
Q ss_pred HHHHHHHHHhhccCCcc
Q psy11573 189 KAAFDDAIAELDTLSED 205 (248)
Q Consensus 189 k~afd~ai~~ld~l~ee 205 (248)
..+..-=-..+++.+.+
T Consensus 474 ~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 474 EKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHcCCCCCcc
Confidence 98876555556655543
No 11
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.36 E-value=1.3 Score=41.61 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=38.8
Q ss_pred hCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhc
Q psy11573 178 LNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTS 226 (248)
Q Consensus 178 l~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL~lW~~ 226 (248)
.|.+..|+++.+.+. .+|.|++++++.-+.++-.++||+..=..
T Consensus 292 ~g~~neAi~l~qr~l-----tldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 292 AGKPNEAIQLHQRAL-----TLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred cCChHHHHHHHHHHh-----hcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 699999999999876 47889999999999999999999986554
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.01 E-value=1.6 Score=26.86 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHP 161 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~p 161 (248)
+.|...|++|+.+.+..++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 57999999999999988899998
No 13
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.37 E-value=3.1 Score=24.53 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=25.0
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
+..++.+..+.|+|+++++++++++.++|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456788899999999999999999988764
No 14
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.49 E-value=2.4 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHH
Q psy11573 144 AYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACR 186 (248)
Q Consensus 144 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~ 186 (248)
+|++|+++ .|.| -....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n---~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNN---AEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCC---HHHHHHHHHHHHH-CcCHHhhcC
Confidence 47777754 3444 4556888898887 699999863
No 15
>KOG2002|consensus
Probab=77.20 E-value=23 Score=38.05 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=92.8
Q ss_pred cccchhhhhhhchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhh--hHHHHHHHHHhhhhh
Q psy11573 4 DRLLGGYLADLQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGAR--RASWRIISSIEQKEE 81 (248)
Q Consensus 4 ~~~~~~~~~~~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~--R~s~R~l~~ieqke~ 81 (248)
+--|+++|+=| =+|.++.+-++|-.++.+.|.+.-++|..-++-|-....+|=++-.+. +.||--...+.+
T Consensus 158 ~~sp~Nil~Ll----GkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp--- 230 (1018)
T KOG2002|consen 158 KQSPDNILALL----GKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP--- 230 (1018)
T ss_pred hhCCcchHHHH----HHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh---
Confidence 34577888766 899999999999999999999999999999998888887765543322 233332222211
Q ss_pred hhchhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhh--cCCCC
Q psy11573 82 NKGAEDKLEMIRQYRTQVRPPCIRILAHNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMT--ELPPT 159 (248)
Q Consensus 82 ~~~~~~~~~~i~~yr~kIe~EC~eii~eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~--~L~pt 159 (248)
-|.+.+.. ..+.++ .|... ++|+.|+.+-.. ...|.
T Consensus 231 --------------------~~v~alv~--L~~~~l---------~~~d~-----------~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 231 --------------------TCVSALVA--LGEVDL---------NFNDS-----------DSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred --------------------hhHHHHHH--HHHHHH---------Hccch-----------HHHHHHHHHHHHHHhhcCC
Confidence 14444310 111110 11111 455555544432 57889
Q ss_pred CcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy11573 160 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 197 (248)
Q Consensus 160 ~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~ 197 (248)
||.-|...-|+=+| -++.+.++.+|-.|+..+..
T Consensus 269 nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 269 NPVALNHLANHFYF----KKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred CcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhh
Confidence 99988887777555 69999999999999988843
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=76.01 E-value=89 Score=31.21 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLL 217 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLL 217 (248)
.+.|.+.|++|+. +.|.++. ..++.+-.++. +|+.++|+....+|..-+-+.-+-..--+|.+++.+-..+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777664 3555553 22334444444 8999999998888876654322222233566666664444
Q ss_pred Hhh
Q psy11573 218 RDN 220 (248)
Q Consensus 218 rDN 220 (248)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 444
No 17
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=73.86 E-value=1e+02 Score=30.93 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCC------CCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 131 GTERKEAAENSLVAYKSASDIAMTELP------PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 131 ~~~~~~~~e~A~~aY~~A~~~a~~~L~------pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
+..+..+++.-...|...++... .++ +..|.-+--++.|-.-+|+.+|+.++|++...+|++
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34566677777777777665432 233 235777777888888899999999999998887754
No 18
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=71.40 E-value=6.8 Score=25.21 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=26.9
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
+..++....+.|+++++++.++++++..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457888999999999999999999998776
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=71.01 E-value=1.1e+02 Score=30.18 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=20.5
Q ss_pred hhHHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 16 PVQQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 16 ~~~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
....++.+....|+|++++.++.++++.+|.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 3445566666677777777777777766554
No 20
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=69.92 E-value=8.5 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.1
Q ss_pred HHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 18 QQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 18 ~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
..++......++|++++.+.+++++++|+
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677788899999999999999998875
No 21
>KOG4162|consensus
Probab=68.81 E-value=35 Score=35.87 Aligned_cols=99 Identities=20% Similarity=0.117 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhHHHHHHHhhcccccchhhcc-CchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy11573 87 DKLEMIRQYRTQVRPPCIRILAHNVYFRNTLKGDYHRYLAEFA-TGTERKEAAENSLVAYKSASDIAMTELPPTHPIRLG 165 (248)
Q Consensus 87 ~~~~~i~~yr~kIe~EC~eii~eskvFy~KmKGDyyRYlAE~~-~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~pirLg 165 (248)
..+...-+|-.++.+.|.+....-+---+++-|=.|-..|=-. ..++|.....++.++|++|.+ +.|+|| -
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp---~ 479 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP---L 479 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc---h
Confidence 3445556777777775433331112222445565665555444 456788889999999999974 678899 2
Q ss_pred HhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q psy11573 166 LALNFSVFYYEILNSPDRACRLAKAAFDD 194 (248)
Q Consensus 166 LaLN~SVF~yEil~~~~~A~~iAk~afd~ 194 (248)
..++.|++|-+ .++.+.|...++.++.-
T Consensus 480 ~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 480 VIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 34455666555 57777777777766543
No 22
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=67.80 E-value=9.5 Score=26.87 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=30.4
Q ss_pred CcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q psy11573 160 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAEL 199 (248)
Q Consensus 160 ~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~l 199 (248)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888888999988886 79999999999998887 5444
No 23
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=67.18 E-value=31 Score=23.41 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=34.2
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNV 62 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~ 62 (248)
+..++....+.++|++++.++++.++.+|. +..=..-++.+|...
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~ 50 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKL 50 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 456788888999999999999999999876 344455555555543
No 24
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.95 E-value=7.7 Score=22.95 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.3
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCC
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDV 45 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~ 45 (248)
+..++.+..+.|.|+.++.+++++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45678889999999999999999998765
No 25
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.27 E-value=9 Score=22.21 Aligned_cols=30 Identities=10% Similarity=0.229 Sum_probs=24.9
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
+..++.+....|++++++..+++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 446777888899999999999999987664
No 26
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=63.66 E-value=38 Score=22.80 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=38.2
Q ss_pred HHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy11573 19 QLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIIS 74 (248)
Q Consensus 19 ~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~ 74 (248)
.++...-+.|+|++++..+++++..+|. +.+=+..+..++- ..+....|...+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 5677888899999999999999998766 6666666666665 3344444444443
No 27
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=61.70 E-value=36 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 191 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~a 191 (248)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+.++.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 5677888887754 45555666677777777 69999888776653
No 28
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=60.23 E-value=70 Score=25.99 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYY------EILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTL 212 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~y------Eil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ 212 (248)
+.|..+|++|+.+ .|.+ .....|.++.++ ..+|+.+.|....++|+.-- ...-.++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW-KQAIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH-HHHHHhCcccHHHHHH
Confidence 5688889888865 3333 233344455544 24788888887777665322 2222345555666655
Q ss_pred HHHH
Q psy11573 213 IMQL 216 (248)
Q Consensus 213 ilqL 216 (248)
.|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 5543
No 29
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.08 E-value=55 Score=28.70 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=48.0
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcc
Q psy11573 125 LAEFATGTERKEAAENSLVAYKSASDIAMTELPPTHP---IRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDT 201 (248)
Q Consensus 125 lAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~p---irLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~ 201 (248)
++-|..+.+.+++++.|..-|++|+.+- |..+ .-||.|+--=-|+..-..+.+.=.+.|...|+.|... .
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~ 110 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--D 110 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--C
Confidence 5667888888889999999999999762 2221 4466665544443332223333345666678888753 2
Q ss_pred CCcccHHhHHHH
Q psy11573 202 LSEDSYKDSTLI 213 (248)
Q Consensus 202 l~ee~y~ds~~i 213 (248)
-+.+.|+.+..+
T Consensus 111 P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 111 PNNELYRKSLEM 122 (186)
T ss_dssp TT-HHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 345668766543
No 30
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.00 E-value=19 Score=18.97 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=24.2
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
...++.+....++|++++.++.+.+...|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 346677888899999999999998876653
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=59.78 E-value=1.9e+02 Score=28.66 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=49.6
Q ss_pred hhchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Q psy11573 13 DLQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 77 (248)
Q Consensus 13 ~~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ie 77 (248)
....+...++....-|+|++++..+++.++..|+ +.+=+..+..+|-. .+....|...+....
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 3445677888888889999999999999988777 77788888888776 477777777776543
No 32
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.07 E-value=42 Score=22.98 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~af 192 (248)
+.|..+++.++.+ +|-...+-++++.+++. +|+.++|+....++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 4556666666543 45556667778888877 799999988777766
No 33
>KOG2076|consensus
Probab=55.29 E-value=3e+02 Score=29.69 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=91.3
Q ss_pred hhhh-hhchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh--hhhhhHHHHHHHHHhhhhhhhch
Q psy11573 9 GYLA-DLQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNV--IGARRASWRIISSIEQKEENKGA 85 (248)
Q Consensus 9 ~~~~-~~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~--i~~~R~s~R~l~~ieqke~~~~~ 85 (248)
+.|+ +|+.|+-.|.....-|+++++....+.+|..+|- ...=---|+-.|-+. +..-=+.|-....+..+..
T Consensus 133 ~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---- 207 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---- 207 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh----
Confidence 4454 4999999999999999999999999999987653 333333344444333 2222223333222222110
Q ss_pred hHHHHHHHHHHHHhhhhhHhhhhhHHHHH---HHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy11573 86 EDKLEMIRQYRTQVRPPCIRILAHNVYFR---NTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELPPTHPI 162 (248)
Q Consensus 86 ~~~~~~i~~yr~kIe~EC~eii~eskvFy---~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~pi 162 (248)
..=..+-++-. =.+-|...++.| .+++++-++|+.|-..=-++-.-...|...|.+.+.+ .||.+--
T Consensus 208 -e~W~~ladls~-----~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----~p~~d~e 277 (895)
T KOG2076|consen 208 -ELWKRLADLSE-----QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL----DPPVDIE 277 (895)
T ss_pred -HHHHHHHHHHH-----hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----CCchhHH
Confidence 00011111111 112223344444 3567777888877553222222345688899888765 3444433
Q ss_pred h-HHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 163 R-LGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 163 r-LgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
| +.++-+++-++++ +++.+.|+++-..++.
T Consensus 278 r~~d~i~~~~~~~~~-~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFIT-HNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHh
Confidence 3 3466666555555 4555666666666655
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=51.87 E-value=53 Score=26.72 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
.+.|...|++|+.+. |.++.......|.++.+.. +|+.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 347888899888763 2233333355666555554 8999999998888774
No 35
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=50.67 E-value=63 Score=21.69 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=40.2
Q ss_pred HhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhh
Q psy11573 26 LFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE 80 (248)
Q Consensus 26 qaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke 80 (248)
+.|+|++++..++++++.+|. +.+=+-.+..+|-.. +..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 468899999999999998887 777777777777654 77777888887665543
No 36
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=48.92 E-value=68 Score=23.01 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=32.3
Q ss_pred hhHHHhhHHHHhcCHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhhh
Q psy11573 16 PVQQLSHFRFLFRLFSEMVEAMKKVASL-----DVELTVEERNLLSVAYKNVI 63 (248)
Q Consensus 16 ~~~~~a~laeqaeRydDmv~~mK~li~~-----~~eLs~EERnLLSvAYKn~i 63 (248)
.+...|--++..|+|++++.++++.++. ..+.++..|..|..=++..+
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl 60 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYL 60 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3566777788889999999999888762 34445556665554444443
No 37
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=48.53 E-value=31 Score=27.78 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHhhcccccchhhccCc-hhHHHHHHHHHHHHHHHHHHH
Q psy11573 112 YFRNTLKGDYHRYLAEFATG-TERKEAAENSLVAYKSASDIA 152 (248)
Q Consensus 112 vFy~KmKGDyyRYlAE~~~~-~~~~~~~e~A~~aY~~A~~~a 152 (248)
.|-+...|+.|..+|....+ +-+....-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 37789999999999988765 456667888999999997553
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=47.53 E-value=3.8e+02 Score=28.59 Aligned_cols=201 Identities=10% Similarity=0.073 Sum_probs=110.3
Q ss_pred HHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhh-----------chhH
Q psy11573 19 QLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENK-----------GAED 87 (248)
Q Consensus 19 ~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke~~~-----------~~~~ 87 (248)
.+|++....++|+.+++..+++++.+|.= ++=...|..+|-.. +..-.+...+..+....... +...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~-~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTN-PDLISGMIMTQADA-GRGGVVLKQATELAERDPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhc-CCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcch
Confidence 44667777788888888888888877664 33333444444443 45555666665544432210 0111
Q ss_pred HHHHHHHHHHHhhhh--hHhhh-----------------------h--hHHHHHHHhhcccccchh-----hccCchhHH
Q psy11573 88 KLEMIRQYRTQVRPP--CIRIL-----------------------A--HNVYFRNTLKGDYHRYLA-----EFATGTERK 135 (248)
Q Consensus 88 ~~~~i~~yr~kIe~E--C~eii-----------------------~--eskvFy~KmKGDyyRYlA-----E~~~~~~~~ 135 (248)
..+.+..|++-++.. =.+++ | -+.+=...+..|...... .-.+..+|.
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 123444444444444 11111 1 011112223333332222 111245677
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHH------hhhH------HHHHHHH----------------------hCCh
Q psy11573 136 EAAENSLVAYKSASDIAMTELPPTHPIRLGL------ALNF------SVFYYEI----------------------LNSP 181 (248)
Q Consensus 136 ~~~e~A~~aY~~A~~~a~~~L~pt~pirLgL------aLN~------SVF~yEi----------------------l~~~ 181 (248)
..+++|+.-|+.-+..-. ..||.||.++.. +|+. .+=.|+. .+.|
T Consensus 265 ~~~d~ala~~~~l~~~~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 265 DIADKALADYQNLLTRWG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHhhcc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 788899999888876543 688888874321 2221 1222332 3789
Q ss_pred HHHHHHHHHHHHHHHH------hh-------c-cCCcccHHhHHHHHHHHHhhHh
Q psy11573 182 DRACRLAKAAFDDAIA------EL-------D-TLSEDSYKDSTLIMQLLRDNLT 222 (248)
Q Consensus 182 ~~A~~iAk~afd~ai~------~l-------d-~l~ee~y~ds~~ilqLLrDNL~ 222 (248)
++|..|-++++...-+ .+ - -++.+.|.++..+++-+.++.-
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9999999998875410 11 1 1345789999999999988644
No 39
>smart00030 CLb CLUSTERIN Beta chain.
Probab=46.44 E-value=2.1e+02 Score=25.43 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=37.3
Q ss_pred HhhHHHHhcCHHHH--------HHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhh
Q psy11573 20 LSHFRFLFRLFSEM--------VEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE 80 (248)
Q Consensus 20 ~a~laeqaeRydDm--------v~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke 80 (248)
+.+++.+.++|=|- |+-||.+++. |.+|+.-|-.+.+..=-.+-.|+.....++++.
T Consensus 9 Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer----~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL 73 (206)
T smart00030 9 LQEMSTQGSKYINKEIKNALKGVKQIKTLIEK----TNKERKSLLSTLEEAKKKKEEALKDTRESEEKL 73 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888662 6677777765 778887776666665555555555555555443
No 40
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=45.07 E-value=32 Score=21.13 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=21.0
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhh
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~ 42 (248)
+..++.+..+.|.|++++++.++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34678899999999999999999654
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=44.81 E-value=1.6e+02 Score=23.47 Aligned_cols=57 Identities=14% Similarity=0.021 Sum_probs=36.4
Q ss_pred chhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy11573 15 QPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRII 73 (248)
Q Consensus 15 ~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l 73 (248)
+....++......|+|++++..++++++.+|. +..-...+...|-.. +....+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 34556777778889999999999999887655 334444455554432 3333444444
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=44.64 E-value=33 Score=24.62 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=6.8
Q ss_pred hCChHHHHHHHHH
Q psy11573 178 LNSPDRACRLAKA 190 (248)
Q Consensus 178 l~~~~~A~~iAk~ 190 (248)
+|+.++|+..-++
T Consensus 71 l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 71 LGKYEEAIKALEK 83 (84)
T ss_dssp TT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHhc
Confidence 5666666655443
No 43
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=43.56 E-value=83 Score=22.94 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 194 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ 194 (248)
+.|...|+.++. +.|.||......++.+..++. +++.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777764 346666555555555555554 89999999887776665
No 44
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=43.18 E-value=93 Score=25.45 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 467888888876542 222223345566665555 7999998887777765
No 45
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=42.69 E-value=3.9e+02 Score=27.30 Aligned_cols=29 Identities=0% Similarity=-0.068 Sum_probs=15.9
Q ss_pred HHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 18 QQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 18 ~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
..++.+..+.|++++++..+++++..+|.
T Consensus 114 ~~la~~l~~~g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 114 LLVASVLLKSKQYATVADLAEQAWLAFSG 142 (656)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34455555555666666555555555444
No 46
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=42.10 E-value=42 Score=36.05 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 196 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai 196 (248)
.++|..+|++++++ .|.||. +||+=-|+|... +.++|.+++++|+.--+
T Consensus 132 ~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 132 NKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 45789999999864 377764 566655555555 99999999999977644
No 47
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=41.95 E-value=36 Score=27.65 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcc
Q psy11573 174 YYEILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSD 227 (248)
Q Consensus 174 ~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL~lW~~e 227 (248)
|-+++.....+.++=.++|..+...|....+..-.+....++-|..|..+|+.-
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~ 61 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIF 61 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 445555566666666778888888877665443233356779999999999964
No 48
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=40.89 E-value=59 Score=27.09 Aligned_cols=62 Identities=24% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhhhH-HHHHHHHhCC---hHHHHHHHHHHHHHHHHhhcc
Q psy11573 140 NSLVAYKSASDIAMTELPPTHPIRLGLALNF-SVFYYEILNS---PDRACRLAKAAFDDAIAELDT 201 (248)
Q Consensus 140 ~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~-SVF~yEil~~---~~~A~~iAk~afd~ai~~ld~ 201 (248)
....+|-+++.-....++...|+.+...|.+ .||..+--.+ .+..-.....++++|+..+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555567888889999999999 5665222112 233457788999999887764
No 49
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.29 E-value=1e+02 Score=22.28 Aligned_cols=30 Identities=3% Similarity=-0.126 Sum_probs=24.6
Q ss_pred hhchhHHHhhHHHHhcCHHHHHHHHHHHhh
Q psy11573 13 DLQPVQQLSHFRFLFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 13 ~~~~~~~~a~laeqaeRydDmv~~mK~li~ 42 (248)
.-..|.++|--.+.+|+|++++.++.+.++
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334667778788999999999999998886
No 50
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=40.24 E-value=1.9e+02 Score=24.63 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccc--HHhHHH
Q psy11573 135 KEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDS--YKDSTL 212 (248)
Q Consensus 135 ~~~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~--y~ds~~ 212 (248)
..--++|..+|..|..+ .|.||-- ..|.++-+.- +|+++.| +++|+.|+.--...++.. ...+..
T Consensus 82 ~g~~~~AI~aY~~A~~L-----~~ddp~~---~~~ag~c~L~-lG~~~~A----~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQI-----KIDAPQA---PWAAAECYLA-CDNVCYA----IKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhc-----CCCCchH---HHHHHHHHHH-cCCHHHH----HHHHHHHHHHhccChhHHHHHHHHHH
Confidence 34456788888888754 4555532 3444554444 6887776 567887777665444322 233666
Q ss_pred HHHHHHh
Q psy11573 213 IMQLLRD 219 (248)
Q Consensus 213 ilqLLrD 219 (248)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 6666654
No 51
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=38.69 E-value=49 Score=22.64 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=17.1
Q ss_pred hHHHHhcCHHHHHHHHHHHhhcCCCCC
Q psy11573 22 HFRFLFRLFSEMVEAMKKVASLDVELT 48 (248)
Q Consensus 22 ~laeqaeRydDmv~~mK~li~~~~eLs 48 (248)
++..+.++|+.++.++..++..+|+-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccc
Confidence 455566677777777777776655543
No 52
>KOG1126|consensus
Probab=38.41 E-value=3.5e+02 Score=28.13 Aligned_cols=46 Identities=9% Similarity=0.224 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHHhhhhhhhHHHHHH
Q psy11573 28 RLFSEMVEAMKKVASLDVELTVE-----ERNLLSVAYKNVIGARRASWRII 73 (248)
Q Consensus 28 eRydDmv~~mK~li~~~~eLs~E-----ERnLLSvAYKn~i~~~R~s~R~l 73 (248)
.-|+-+|++|++.++++|.|.-- --....-.|-......|.|+|+.
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 45889999999999998865522 01223334555555666666554
No 53
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=38.34 E-value=1.4e+02 Score=23.79 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 194 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ 194 (248)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999752 344 4555556666655444 589999999998887654
No 54
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=37.58 E-value=1e+02 Score=27.34 Aligned_cols=80 Identities=29% Similarity=0.343 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc------chHHHh---hhHHHH-HHHHhCChHHHHHHHHHHHHHHHHhhccCCcccH-
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHP------IRLGLA---LNFSVF-YYEILNSPDRACRLAKAAFDDAIAELDTLSEDSY- 207 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~p------irLgLa---LN~SVF-~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y- 207 (248)
+.|...|++.+ .+-|+|| ..+|++ ++-+.| .|.-....+.--.-++.||+..-.-++.-++..|
T Consensus 86 ~~A~~~~e~fi-----~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 86 PLAQAAIDRFI-----RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHHHHHHHH-----HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 34566666554 4677887 344443 222222 1211222233233345455544444555666665
Q ss_pred HhHHHHHHHHHhhHhh
Q psy11573 208 KDSTLIMQLLRDNLTL 223 (248)
Q Consensus 208 ~ds~~ilqLLrDNL~l 223 (248)
.|+..-|..||+-|..
T Consensus 161 ~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 161 TDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7799999999988754
No 55
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.51 E-value=5e+02 Score=27.12 Aligned_cols=131 Identities=11% Similarity=-0.095 Sum_probs=72.3
Q ss_pred hchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhchhHHHHHHH
Q psy11573 14 LQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKLEMIR 93 (248)
Q Consensus 14 ~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~ 93 (248)
.+-..-+|.+..+.|||+|+......+++..|+...--.++- ++|...++-+ ..+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a---------------~~L~~~~~~e---------eA~~ 141 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILML---------------RGVKRQQGIE---------AGRA 141 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHH---------------HHHHHhccHH---------HHHH
Confidence 334455777888889999988888888888887644322222 2221111111 1111
Q ss_pred HHHHHhhhhhHhhh---hhHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhH
Q psy11573 94 QYRTQVRPPCIRIL---AHNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNF 170 (248)
Q Consensus 94 ~yr~kIe~EC~eii---~eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~ 170 (248)
+|...+ +++..+.+ ++ |..... ..-.+.|..+|++++. . ||-.=..-+++
T Consensus 142 --------~~~~~l~~~p~~~~~~~-~~-------a~~l~~---~g~~~~A~~~y~~~~~--~------~p~~~~~~~~~ 194 (694)
T PRK15179 142 --------EIELYFSGGSSSAREIL-LE-------AKSWDE---IGQSEQADACFERLSR--Q------HPEFENGYVGW 194 (694)
T ss_pred --------HHHHHhhcCCCCHHHHH-HH-------HHHHHH---hcchHHHHHHHHHHHh--c------CCCcHHHHHHH
Confidence 133444 33333321 11 111110 0123578888888874 1 44444556777
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHH
Q psy11573 171 SVFYYEILNSPDRACRLAKAAFDDAI 196 (248)
Q Consensus 171 SVF~yEil~~~~~A~~iAk~afd~ai 196 (248)
+.-+.+ +|+.+.|...-++|++-.-
T Consensus 195 a~~l~~-~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 195 AQSLTR-RGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhhC
Confidence 777776 7999999887776666543
No 56
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=36.85 E-value=1.5e+02 Score=21.19 Aligned_cols=27 Identities=15% Similarity=-0.043 Sum_probs=22.3
Q ss_pred hhHHHhhHHHHhcCHHHHHHHHHHHhh
Q psy11573 16 PVQQLSHFRFLFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 16 ~~~~~a~laeqaeRydDmv~~mK~li~ 42 (248)
.++.+|--.+.+|+|++++.+.++.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777778889999999999888876
No 57
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.46 E-value=49 Score=28.25 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhh
Q psy11573 31 SEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGA 65 (248)
Q Consensus 31 dDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~ 65 (248)
...++..+++++...+||.+|++.|..+...++-.
T Consensus 82 ~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 82 ENALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 35678888899989999999999999999988754
No 58
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=35.83 E-value=1.2e+02 Score=20.25 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
+.|...|++++. .+|-.--.-+..+..++. .|++++|+..-+++++
T Consensus 14 ~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 14 DEAIAAFEQALK--------QDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 456666666653 235555666667777775 7999999977666654
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=35.53 E-value=75 Score=27.23 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=31.6
Q ss_pred hHHHhh-HHHHhcC--HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy11573 17 VQQLSH-FRFLFRL--FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIIS 74 (248)
Q Consensus 17 ~~~~a~-laeqaeR--ydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~ 74 (248)
+..+|. +..+.|+ ++++...+.+++..+|. +.+=+.+|..++-. .+....|.....
T Consensus 110 ~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~~ 168 (198)
T PRK10370 110 YAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 344555 3455666 47777777777777666 34455555555543 344444444443
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=35.35 E-value=1.1e+02 Score=28.73 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhh--cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q psy11573 143 VAYKSASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 191 (248)
Q Consensus 143 ~aY~~A~~~a~~--~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~a 191 (248)
.-|++|+..+.. .+.|.+| ...++.++.|+. +|+.+.|+...++|
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 334445544432 2344433 223334444443 56666666544443
No 61
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=35.09 E-value=3.4e+02 Score=24.53 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=13.2
Q ss_pred HHhhHHHHhcCHHHHHHHHHHHhhc
Q psy11573 19 QLSHFRFLFRLFSEMVEAMKKVASL 43 (248)
Q Consensus 19 ~~a~laeqaeRydDmv~~mK~li~~ 43 (248)
.++.+....|+|+++..+++++.+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 3344444455666666655555544
No 62
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=34.49 E-value=48 Score=26.70 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=42.1
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhHhhhhcc
Q psy11573 174 YYEILNSPD-RACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSD 227 (248)
Q Consensus 174 ~yEil~~~~-~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL~lW~~e 227 (248)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+.-
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~~ 59 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTVL 59 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Confidence 566777666 7777778999999998887765544 6778889999999999963
No 63
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=33.24 E-value=6.7e+02 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
+.|...|++|++ +.|.|| .+-.|.+..+ ..+|++++|....++|+.
T Consensus 660 eeAi~~l~~AL~-----l~P~~~---~a~~nLA~al-~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 660 AQSREMLERAHK-----GLPDDP---ALIRQLAYVN-QRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHH-----hCCCCH---HHHHHHHHHH-HHCCCHHHHHHHHHHHHh
Confidence 567888888875 456665 3444555444 448999999987777764
No 64
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.99 E-value=71 Score=21.27 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=27.1
Q ss_pred hhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHhHHHHHH
Q psy11573 168 LNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDSYKDSTLIMQ 215 (248)
Q Consensus 168 LN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y~ds~~ilq 215 (248)
|+.+-=|.+ +||.+.|.++..+...+ -+.+...++..+|+
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~~-------~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIEE-------GDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHHc-------CCHHHHHHHHHHHh
Confidence 455666677 79999999988876642 23455566666654
No 65
>COG4499 Predicted membrane protein [Function unknown]
Probab=32.87 E-value=84 Score=30.75 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=39.5
Q ss_pred HHHhhhHHHHHHHHhCChHHHHHHHHHH-----HHHHHHhhccCCcccHHhH
Q psy11573 164 LGLALNFSVFYYEILNSPDRACRLAKAA-----FDDAIAELDTLSEDSYKDS 210 (248)
Q Consensus 164 LgLaLN~SVF~yEil~~~~~A~~iAk~a-----fd~ai~~ld~l~ee~y~ds 210 (248)
|-|++=|++|+|-+.--.+.||.-|.+| |++.++.++..|.++...+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 3467889999999999999999999999 4889999998887765443
No 66
>KOG4626|consensus
Probab=32.67 E-value=6.3e+02 Score=26.86 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH------HHHHHHhhccC
Q psy11573 136 EAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA------FDDAIAELDTL 202 (248)
Q Consensus 136 ~~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~a------fd~ai~~ld~l 202 (248)
.-.++|..+|++|+.|. |+.---.-|..+=|.| +|+...|++.-..| |.+|.++|-++
T Consensus 402 gnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred ccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 34678999999998762 5555556677787777 69999998877665 56777776544
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=31.85 E-value=1.6e+02 Score=23.60 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd 193 (248)
.+.|..+|+.|+. +.|.||- ...|.++-+. .+|++++|+.....|..
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~---a~~~lg~~l~-~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPE---PVYQTGVCLK-MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 4578899999885 4455552 1223333333 38999998887666654
No 68
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=31.79 E-value=4.3e+02 Score=24.69 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=29.1
Q ss_pred HHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy11573 18 QQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIIS 74 (248)
Q Consensus 18 ~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~ 74 (248)
..++......|+|++++.++.+++.++|.. ..=...+..+|-. .+....|.+.+.
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~ 94 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 345555555666666666666666665542 3334444444433 344455555543
No 69
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=31.16 E-value=5.6e+02 Score=27.11 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=71.9
Q ss_pred hhchhHHHhhHHHHhcCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhh---hhchh--
Q psy11573 13 DLQPVQQLSHFRFLFRLFSE-MVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE---NKGAE-- 86 (248)
Q Consensus 13 ~~~~~~~~a~laeqaeRydD-mv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqke~---~~~~~-- 86 (248)
++-...|-|.+|.+++ +++ +-+|+-+... .|-.-|+.-|.-++.|..+...-. .-+.+
T Consensus 591 alkL~Lq~A~~AD~~~-~e~iaYEFf~QAf~---------------iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Eny 654 (762)
T PF03635_consen 591 ALKLYLQAAIVADQCG-LEEIAYEFFSQAFT---------------IYEEEISDSKAQFQALTLIIGTLQKTRSFSEENY 654 (762)
T ss_dssp HHHHHHHHHHHHHHH---TTHHHHHHHHHHH---------------HHHHH--SHHHHHHHHHHHHHHHCC-----HHHH
T ss_pred hHHHHHHHHHHHHhhC-cHHHHHHHHHHHHH---------------HHHhhccchHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 4555667777787777 333 3345544433 233345555555555544433321 11111
Q ss_pred -HHHHHHHHHHHHhhhh---hHhhhhhHHHHHHHhhcccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy11573 87 -DKLEMIRQYRTQVRPP---CIRILAHNVYFRNTLKGDYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELPPTHPI 162 (248)
Q Consensus 87 -~~~~~i~~yr~kIe~E---C~eii~eskvFy~KmKGDyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~pi 162 (248)
.....+-.|-.|+-+- |..|..=|-.|+..=.. +.... ...--++.++|-|+|+.+|...+.|.-.+
T Consensus 655 d~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~-------~~~~~--~~rd~krVlECLQKaLriAds~md~~~~~ 725 (762)
T PF03635_consen 655 DTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEIS-------EETGS--FYRDGKRVLECLQKALRIADSCMDPSQSV 725 (762)
T ss_dssp HHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-T-------TTTT---B---HHHHHHHHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCC-------ccccc--cccChHHHHHHHHHHHHHHHHHhCcchhH
Confidence 1222333444444443 77777556666544432 11111 11224678999999999999888754444
Q ss_pred hHH-HhhhHHHHHHHH
Q psy11573 163 RLG-LALNFSVFYYEI 177 (248)
Q Consensus 163 rLg-LaLN~SVF~yEi 177 (248)
-|= =+||..+|||+.
T Consensus 726 ~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 726 QLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhc
Confidence 333 379999999963
No 70
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=30.14 E-value=4e+02 Score=23.83 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH-HhhhHHHHHHHHhCChHHHHHHHHHHHHHHH--HhhccCCcccHHhHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLG-LALNFSVFYYEILNSPDRACRLAKAAFDDAI--AELDTLSEDSYKDSTLIM 214 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLg-LaLN~SVF~yEil~~~~~A~~iAk~afd~ai--~~ld~l~ee~y~ds~~il 214 (248)
.+.|.-.|.++-.... .++|....+|+ +.+|+.+-.+..-++.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3568888888887765 68888899998 7889999999953399999999999988632 234444443333345667
Q ss_pred HHHHhhHhhhhc
Q psy11573 215 QLLRDNLTLWTS 226 (248)
Q Consensus 215 qLLrDNL~lW~~ 226 (248)
++|-...-.|..
T Consensus 88 ~~La~~~l~~~~ 99 (278)
T PF08631_consen 88 RLLANAYLEWDT 99 (278)
T ss_pred HHHHHHHHcCCC
Confidence 777666666654
No 71
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.92 E-value=82 Score=31.12 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=47.3
Q ss_pred ccchhhhhhhchhHHHhhHHHH--hcCHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy11573 5 RLLGGYLADLQPVQQLSHFRFL--FRLFSEMVEAMKKVASL---DVELTVEERNLLSVAYKNVIGARRASWRII 73 (248)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~laeq--aeRydDmv~~mK~li~~---~~eLs~EERnLLSvAYKn~i~~~R~s~R~l 73 (248)
..|||.|+.+ .++|-|| ..+|++.++-|.+|-+- .|-.|+.-.-....|+-||+..-| |++|
T Consensus 298 qvPGGMlSNl-----~sQLkeqnaldK~~eVLeEvprVredlGypPLVTPtSQiVGtQAvlNVl~Ger--YK~I 364 (472)
T COG5016 298 QVPGGMLSNL-----ESQLKEQNALDKLEEVLEEVPRVREDLGYPPLVTPTSQIVGTQAVLNVLTGER--YKVI 364 (472)
T ss_pred eCChHHHHHH-----HHHHHHcchhhHHHHHHHHhHHHHhhcCCCCccCchhhhhhHHHHHHHHhcch--hhHH
Confidence 3699999998 4556666 48999999999999862 456778877888888888887643 4555
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=29.75 E-value=1.7e+02 Score=23.36 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=6.3
Q ss_pred hCChHHHHHHHHHH
Q psy11573 178 LNSPDRACRLAKAA 191 (248)
Q Consensus 178 l~~~~~A~~iAk~a 191 (248)
.|+.++|.....++
T Consensus 148 ~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 148 AGDFDKAEKYLTRA 161 (234)
T ss_pred cCCHHHHHHHHHHH
Confidence 34444444444443
No 73
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=29.14 E-value=1.2e+02 Score=22.40 Aligned_cols=27 Identities=11% Similarity=-0.123 Sum_probs=22.6
Q ss_pred hhHHHhhHHHHhcCHHHHHHHHHHHhh
Q psy11573 16 PVQQLSHFRFLFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 16 ~~~~~a~laeqaeRydDmv~~mK~li~ 42 (248)
.++++|--.+++|+|++++.+-.+.++
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 466788888999999999988887775
No 74
>PHA01810 hypothetical protein
Probab=28.68 E-value=1.8e+02 Score=22.11 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=29.9
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHH
Q psy11573 27 FRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRAS 69 (248)
Q Consensus 27 aeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s 69 (248)
..-|.+|...+.++|+-+|..|.+-.-=|..|+..++-.+-+|
T Consensus 12 gqaytemlqlfnkliqwnpaytfdnainlvsacqqlllnynss 54 (100)
T PHA01810 12 GQAYTEMLQLFNKLIQWNPAYTFDNAINLVSACQQLLLNYNSS 54 (100)
T ss_pred hHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhcchH
Confidence 3459999999999999999998775443444555544444444
No 75
>KOG1126|consensus
Probab=28.56 E-value=65 Score=33.25 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=91.8
Q ss_pred HHHhhHHHHhcCHHHHHHHHHHHhhcCCC-------CCH-----HHHHHHHHHHHhhhhhhhH---HHHHHHH--Hhhhh
Q psy11573 18 QQLSHFRFLFRLFSEMVEAMKKVASLDVE-------LTV-----EERNLLSVAYKNVIGARRA---SWRIISS--IEQKE 80 (248)
Q Consensus 18 ~~~a~laeqaeRydDmv~~mK~li~~~~e-------Ls~-----EERnLLSvAYKn~i~~~R~---s~R~l~~--ieqke 80 (248)
.|+.+.-+...-|+.+..++..+=...|- +|. .+--=||.--|++|+.-|. +|..+-. ..|+
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk- 435 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK- 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh-
Confidence 45555566666677766666555433221 110 1122345555666665553 4665521 1122
Q ss_pred hhhchhHHHHHHHHHHHHhhhh----------hHhhh-----hhHHHHH---HHhhcccccchhhccCchhHHHHHHHHH
Q psy11573 81 ENKGAEDKLEMIRQYRTQVRPP----------CIRIL-----AHNVYFR---NTLKGDYHRYLAEFATGTERKEAAENSL 142 (248)
Q Consensus 81 ~~~~~~~~~~~i~~yr~kIe~E----------C~eii-----~eskvFy---~KmKGDyyRYlAE~~~~~~~~~~~e~A~ 142 (248)
++...|+-|+.-|.-+ ..|.+ +.+.-.| +++-+++||=+--...---|.+--+.|+
T Consensus 436 ------dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 436 ------DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred ------HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH
Confidence 2345566666666555 11222 3344444 4578888886654443334445567888
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q psy11573 143 VAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192 (248)
Q Consensus 143 ~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~af 192 (248)
-.|++|+++ ||.-.-+.--...++.. +|..++|+.+-++|+
T Consensus 510 ~~fqkA~~I--------NP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 510 FHFQKAVEI--------NPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHhhhcC--------CccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 888888754 56666666666777666 799999999988884
No 76
>PRK15331 chaperone protein SicA; Provisional
Probab=28.42 E-value=2.8e+02 Score=23.79 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=50.7
Q ss_pred HHHHHHHhhcccc--cchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHH
Q psy11573 110 NVYFRNTLKGDYH--RYLAEFATGTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRL 187 (248)
Q Consensus 110 skvFy~KmKGDyy--RYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~i 187 (248)
.++|-.-..=|+| ||+--....-..++--++|..+|--|.-+... .|.-|.+.| -+|=.+|++.+|..
T Consensus 57 ~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~- 126 (165)
T PRK15331 57 ETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ- 126 (165)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH-
Confidence 4455444444443 34322222223344456677777777665532 333344444 34455899888766
Q ss_pred HHHHHHHHHHhhccCCcccHHhHHHHHHHHHhhH
Q psy11573 188 AKAAFDDAIAELDTLSEDSYKDSTLIMQLLRDNL 221 (248)
Q Consensus 188 Ak~afd~ai~~ld~l~ee~y~ds~~ilqLLrDNL 221 (248)
+|.-|+..-. ..+-..-+...+..|..|.
T Consensus 127 ---~f~~a~~~~~--~~~l~~~A~~~L~~l~~~~ 155 (165)
T PRK15331 127 ---CFELVNERTE--DESLRAKALVYLEALKTAE 155 (165)
T ss_pred ---HHHHHHhCcc--hHHHHHHHHHHHHHHHccc
Confidence 8888876211 1122333666777766554
No 77
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=28.09 E-value=3.5e+02 Score=24.01 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=57.4
Q ss_pred ccccchhhhhhhchhHHHhhHHHHhcCHHHHHHHHHHHhhc---CC-----CCCHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy11573 3 RDRLLGGYLADLQPVQQLSHFRFLFRLFSEMVEAMKKVASL---DV-----ELTVEERNLLSVAYKNVIGARRASWRIIS 74 (248)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~a~laeqaeRydDmv~~mK~li~~---~~-----eLs~EERnLLSvAYKn~i~~~R~s~R~l~ 74 (248)
|..++||..+-+ .|.-+-+-++.-||.++.|+.++.+ .. ++..+=+.+....-|... .....+.
T Consensus 66 ~~~l~~~~flP~----~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~----~~~~ai~ 137 (217)
T COG1392 66 RLELYKGFFLPF----DREDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAE----LLAEAIE 137 (217)
T ss_pred HHHHHhcccCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 456789998888 8888899999999999999998852 22 555555555555544433 3333343
Q ss_pred HHhhhhhhhchhHHHHHHHHHHHHhhhhhHhhh
Q psy11573 75 SIEQKEENKGAEDKLEMIRQYRTQVRPPCIRIL 107 (248)
Q Consensus 75 ~ieqke~~~~~~~~~~~i~~yr~kIe~EC~eii 107 (248)
.+.+.-+. ......+-.=.+++|++|..+-
T Consensus 138 ~L~~~~e~---~~~~~~i~~eI~~~E~e~D~i~ 167 (217)
T COG1392 138 LLEDLLES---ADRLLEIIKEIEALEHECDDIQ 167 (217)
T ss_pred HHHHHHHh---HHHHHHHHHHHHHHHHHhhHHH
Confidence 33333221 1122222222566788887765
No 78
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=28.07 E-value=2e+02 Score=26.46 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=49.5
Q ss_pred HHHHHHHHHH-----HHHHHHhh--cCCCCCc------chHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCC
Q psy11573 137 AAENSLVAYK-----SASDIAMT--ELPPTHP------IRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLS 203 (248)
Q Consensus 137 ~~e~A~~aY~-----~A~~~a~~--~L~pt~p------irLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ 203 (248)
.+..+...|+ .|+..+.. .+-|+|| .-.||+ +|....++..=-.-+++||++.-.-++.-+
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 4445555543 45555543 6889999 234555 444455555555555566655555556666
Q ss_pred cccH-HhHHHHHHHHHhhHh
Q psy11573 204 EDSY-KDSTLIMQLLRDNLT 222 (248)
Q Consensus 204 ee~y-~ds~~ilqLLrDNL~ 222 (248)
...| .|+..-|..++|-|.
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred CCcchhhHHHHHHHHHHHHH
Confidence 6666 679999999988765
No 79
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=27.97 E-value=3.3e+02 Score=22.12 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDI 151 (248)
Q Consensus 139 e~A~~aY~~A~~~ 151 (248)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5678889888865
No 80
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=27.84 E-value=8.3e+02 Score=26.70 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=34.2
Q ss_pred HHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy11573 19 QLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISS 75 (248)
Q Consensus 19 ~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ 75 (248)
.++..+...++|++++.++++++..+|.-. .=...|..+|.. .+....|.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 445556677999999999999998877532 233344555532 3444555555543
No 81
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=27.77 E-value=1e+02 Score=27.06 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=39.1
Q ss_pred ccccchhhhhhhchhHHHhhHHHH--hcCHHHHHHHHHHHhhc-C--CCCCHHHHHHHHHHHHhhhhh
Q psy11573 3 RDRLLGGYLADLQPVQQLSHFRFL--FRLFSEMVEAMKKVASL-D--VELTVEERNLLSVAYKNVIGA 65 (248)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~a~laeq--aeRydDmv~~mK~li~~-~--~eLs~EERnLLSvAYKn~i~~ 65 (248)
+.+.|||-++.+ ..|+.++ ..||+++.+.+..+-+. + +--|+--.-.-..|.=||.+.
T Consensus 3 ~hqiPGG~~sNl-----~~Q~~~~g~~dr~~ev~~e~~~v~~~lG~~~~VTPsSqiVg~qA~~nV~~~ 65 (196)
T PF02436_consen 3 RHQIPGGMYSNL-----RQQLKELGLGDRFPEVLKEYPRVRKDLGYPPKVTPSSQIVGDQAVFNVLNG 65 (196)
T ss_dssp HH---HHHHHHH-----HHHHHCTTTTTCHHHHHHHHHHHHHHTTS--SSTTHHHHHHHHHHHHHHTT
T ss_pred eecCCchhHHHH-----HHHHHHcCcHHHHHHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHhh
Confidence 457899999988 2333333 58999999999888764 2 456777777777777777774
No 82
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=27.66 E-value=82 Score=23.51 Aligned_cols=26 Identities=8% Similarity=-0.210 Sum_probs=21.5
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhh
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~ 42 (248)
+..+|--+++.|||.+++.+-+..|+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55778888899999999988887776
No 83
>KOG0550|consensus
Probab=26.73 E-value=2.1e+02 Score=28.48 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=53.2
Q ss_pred hchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q psy11573 14 LQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQK 79 (248)
Q Consensus 14 ~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~ieqk 79 (248)
|..++++|+--.-.|.|+++|+..+++++... |.|-|..|-.|-..+--++|..|=.|--+-..
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~--s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~ 384 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK--DCEIRRTLREAQLALKKSKRKDWYKILGISRN 384 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 45667888777788999999999999988644 48999999999999999999999888655544
No 84
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.73 E-value=2.4e+02 Score=20.60 Aligned_cols=27 Identities=0% Similarity=-0.283 Sum_probs=22.0
Q ss_pred hhHHHhhHHHHhcCHHHHHHHHHHHhh
Q psy11573 16 PVQQLSHFRFLFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 16 ~~~~~a~laeqaeRydDmv~~mK~li~ 42 (248)
.|+.+|--.+.+|+|++++.++.+.++
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456677677889999999999988876
No 85
>PF08335 GlnD_UR_UTase: GlnD PII-uridylyltransferase; InterPro: IPR013546 This entry represents a region found in a family of nucleotide transferases that includes bifunctional uridylyl-removing enzymes/uridylyltransferases (UR/UTases, GlnD; 2.7.7.59 from EC) and glutamine-synthetase adenylyltransferases (GlnE; 2.7.7.42 from EC). The region described in this family is found in many of its members to be C-terminal to a nucleotidyltransferase domain, and N-terminal to an HD domain and two ACT domains []. Bifunctional uridylyl-removing enzymes/uridylyltransferases are responsible for the modification of the regulatory protein PII, or GlnB, thereby acting as the sensory component of the nitrogen regulation (ntr) system []. The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. In response to nitrogen limitation, these transferases catalyse the uridylylation of the PII protein, which in turn stimulates deadenylylation of glutamine synthetase (GlnA), leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters []. Uridylylated PII can act together with NtrB and NtrC to increase transcription of genes in the sigma54 regulon, which include glnA and other nitrogen-level controlled genes []. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters []. It has also been suggested that the product of the glnD gene is involved in other physiological functions such as control of iron metabolism in certain species []. Glutamine-synthetase adenylyltransferase is an adenylyl transferase comprised of an adenylylating domain and a deadenylylating domain which modulate glutamine synthetase (GS) activity, where GS plays an important role in nitrogen assimilation [].; GO: 0016779 nucleotidyltransferase activity; PDB: 3K7D_A 1V4A_A.
Probab=26.41 E-value=1.8e+02 Score=23.47 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=43.1
Q ss_pred chhhhhhhchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy11573 7 LGGYLADLQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRII 73 (248)
Q Consensus 7 ~~~~~~~~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l 73 (248)
||| |.|||-+.|.+++..- .++ .+..+..++. ..-|+.+|...|..||..+-. .|+.+|.+
T Consensus 32 ~GG-L~Diefi~q~~~l~~~-~~~--t~~~l~~l~~-~g~l~~~~~~~L~~ay~fl~~-l~~~L~l~ 92 (142)
T PF08335_consen 32 PGG-LRDIEFIAQYLQLRHG-ARH--TIDALEALAA-AGLLSEEEAEALREAYRFLRR-LRHALRLV 92 (142)
T ss_dssp TTS-HHHHHHHHHHHHHHHT-TT---HHHHHHHHHH-TTSS-HHHHHHHHHHHHHHHH-HHHHHHCT
T ss_pred CCc-chHHHHHHHHHHHHHc-hhh--hHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 566 7899999999988763 333 6666666555 478999999999999987554 45555554
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=26.33 E-value=2.2e+02 Score=24.29 Aligned_cols=11 Identities=45% Similarity=0.757 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q psy11573 140 NSLVAYKSASD 150 (248)
Q Consensus 140 ~A~~aY~~A~~ 150 (248)
.|..+|++|+.
T Consensus 91 ~A~~a~~~Al~ 101 (198)
T PRK10370 91 NALLAYRQALQ 101 (198)
T ss_pred HHHHHHHHHHH
Confidence 46666666654
No 87
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=26.02 E-value=1.1e+02 Score=25.29 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhhhHhh---h-hhHHHHHHHhhcccccchhhccCc
Q psy11573 87 DKLEMIRQYRTQVRPPCIRI---L-AHNVYFRNTLKGDYHRYLAEFATG 131 (248)
Q Consensus 87 ~~~~~i~~yr~kIe~EC~ei---i-~eskvFy~KmKGDyyRYlAE~~~~ 131 (248)
..++.++..|..++..|.+. | .|+|+| +|..----.|++|+...
T Consensus 58 ~llkqLEkeK~~Le~qlk~~e~rLeQEsKAy-hk~ndeRr~ylaEi~~~ 105 (129)
T PF15372_consen 58 QLLKQLEKEKRSLENQLKDYEWRLEQESKAY-HKANDERRQYLAEISQT 105 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHhh
Confidence 45677777777777776553 3 789988 67766677888887754
No 88
>PF13041 PPR_2: PPR repeat family
Probab=25.79 E-value=1.9e+02 Score=18.56 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=27.3
Q ss_pred HHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy11573 24 RFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAY 59 (248)
Q Consensus 24 aeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAY 59 (248)
.-+.|+++++.+.++++.+.+-..+.-=-+.|-.+|
T Consensus 13 ~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 13 YCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345789999999999999888877776666555443
No 89
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.73 E-value=2.5e+02 Score=20.05 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=20.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy11573 36 AMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRII 73 (248)
Q Consensus 36 ~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l 73 (248)
-+...+..-+.++.++|+-...-....+..-..-+..+
T Consensus 7 ~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qM 44 (79)
T PF05008_consen 7 EIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQM 44 (79)
T ss_dssp HHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444677766666666666655555544
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=25.41 E-value=4.1e+02 Score=22.32 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=36.5
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVELT--VEERNLLSVAYKNVIGARRASWRIISSI 76 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~eLs--~EERnLLSvAYKn~i~~~R~s~R~l~~i 76 (248)
+.+++......++|++++..+.+++...|.-. .+-+..+..+|-.. +....|...+...
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~ 96 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRF 96 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 44566666678899999999998888776532 23344555554432 4455555555443
No 91
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.68 E-value=6.3e+02 Score=24.53 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhh
Q psy11573 19 QLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGA 65 (248)
Q Consensus 19 ~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~ 65 (248)
.+..+.-+-|.|..+|+....+.+.||++..|--..|..||..+=.+
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 55666777799999999999999999999999999999999986544
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=24.51 E-value=2.8e+02 Score=20.02 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=14.7
Q ss_pred HHhhHHHHhcCHHHHHHHHHHHhhcCC
Q psy11573 19 QLSHFRFLFRLFSEMVEAMKKVASLDV 45 (248)
Q Consensus 19 ~~a~laeqaeRydDmv~~mK~li~~~~ 45 (248)
.++.+....++|++++.+++.++...|
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 345555555556666666555555433
No 93
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.28 E-value=69 Score=20.67 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=26.2
Q ss_pred ccccchhhccCchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11573 120 DYHRYLAEFATGTERKEAAENSLVAYKSASDIAMTELPPT 159 (248)
Q Consensus 120 DyyRYlAE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt 159 (248)
|.|-=++|+.-..++- ++|..=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4444467777655443 478889999999988777763
No 94
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=23.86 E-value=78 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=31.1
Q ss_pred hhhhhhhchhH---------HHhhHHHHhcCHHHHHHHHHHHhhcCCCC
Q psy11573 8 GGYLADLQPVQ---------QLSHFRFLFRLFSEMVEAMKKVASLDVEL 47 (248)
Q Consensus 8 ~~~~~~~~~~~---------~~a~laeqaeRydDmv~~mK~li~~~~eL 47 (248)
||.|..|-.+. ..|-..-+.|+|+++..+++-++..+|..
T Consensus 20 Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~ 68 (157)
T PRK15363 20 GGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS 68 (157)
T ss_pred CCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 77776554444 67777788899999999999999887754
No 95
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.80 E-value=5e+02 Score=22.75 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH---HHHHHHh
Q psy11573 137 AAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA---FDDAIAE 198 (248)
Q Consensus 137 ~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~a---fd~ai~~ 198 (248)
..+.|..+|.-|+-.+. +...+|..+|...=-...+|.-+|+.+.....-++| |.+|+..
T Consensus 92 t~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999998774 444455555544434467888889877776666666 4455543
No 96
>KOG0687|consensus
Probab=23.70 E-value=3.3e+02 Score=26.41 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=49.1
Q ss_pred hcccccchhhccC---chhH----HHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHH
Q psy11573 118 KGDYHRYLAEFAT---GTER----KEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 190 (248)
Q Consensus 118 KGDyyRYlAE~~~---~~~~----~~~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~ 190 (248)
-++||-|+||-.. +.++ ++.-+.=.+-..++++-|++++.-+ -+| ...+|-+-||-.| +|++.|.+..+.
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~-ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGES-EVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4677777777332 1111 2222223344566677777665533 343 3457777777775 999999999999
Q ss_pred HHHHHHH
Q psy11573 191 AFDDAIA 197 (248)
Q Consensus 191 afd~ai~ 197 (248)
+++++++
T Consensus 130 t~~ktvs 136 (393)
T KOG0687|consen 130 TYEKTVS 136 (393)
T ss_pred HHHHHhh
Confidence 9999986
No 97
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=23.40 E-value=2.2e+02 Score=25.78 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=33.5
Q ss_pred HHhhHHHHh------cCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhhhh
Q psy11573 19 QLSHFRFLF------RLFSEMVEAMKKVASL-------DVELTVEERNLLSVAYKNVIG 64 (248)
Q Consensus 19 ~~a~laeqa------eRydDmv~~mK~li~~-------~~eLs~EERnLLSvAYKn~i~ 64 (248)
.+.++++++ |+|+++..-+..+.+. +..+|.|+-+.|+.+|-.+..
T Consensus 4 eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~ 62 (232)
T PF09577_consen 4 ELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKK 62 (232)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHH
Confidence 344455554 8999998877766642 235999999999999988653
No 98
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=23.26 E-value=3.4e+02 Score=26.44 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=48.9
Q ss_pred ccccchhhhhhhchhH----HHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy11573 3 RDRLLGGYLADLQPVQ----QLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSI 76 (248)
Q Consensus 3 ~~~~~~~~~~~~~~~~----~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSvAYKn~i~~~R~s~R~l~~i 76 (248)
-|..||||-.++--|- +.+.--+.|+|-...+.-+..-|+.++.||.+.|.=+..+..+.......-.+.|..+
T Consensus 191 ~~~F~g~~~~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L 268 (379)
T PF04518_consen 191 TDNFPGSYFMALAKLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLL 268 (379)
T ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888876653221 1122233455555566666666788999999999998888887777766666666443
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.12 E-value=3.9e+02 Score=21.30 Aligned_cols=33 Identities=9% Similarity=-0.122 Sum_probs=27.4
Q ss_pred chhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCC
Q psy11573 15 QPVQQLSHFRFLFRLFSEMVEAMKKVASLDVEL 47 (248)
Q Consensus 15 ~~~~~~a~laeqaeRydDmv~~mK~li~~~~eL 47 (248)
+++..++....+.|+|++++.++++++..+|.-
T Consensus 25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~ 57 (144)
T PRK15359 25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWS 57 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 345567888889999999999999999987763
No 100
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.74 E-value=5.8e+02 Score=23.50 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhcCC----------CCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccH
Q psy11573 138 AENSLVAYKSASDIAMTELP----------PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEDSY 207 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~----------pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ai~~ld~l~ee~y 207 (248)
+......|.+++........ .+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 45567777777765543222 3355888899999999999 699999999999887766533333332221
Q ss_pred HhHHHHHHHHHhhHhhhhccCC
Q psy11573 208 KDSTLIMQLLRDNLTLWTSDMQ 229 (248)
Q Consensus 208 ~ds~~ilqLLrDNL~lW~~e~~ 229 (248)
. +.++.=-.=|.++.+
T Consensus 197 ~------~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVP 212 (321)
T ss_pred H------HHHHHHHHHhCcCCC
Confidence 1 344444477888644
No 101
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.69 E-value=1.5e+02 Score=27.20 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q psy11573 138 AENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192 (248)
Q Consensus 138 ~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~af 192 (248)
.+.|.+.|++|+.++ |-.=-+--||.-|++.. |.+++|...-.+|.
T Consensus 85 ~~~A~e~YrkAlsl~--------p~~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al 130 (250)
T COG3063 85 NDLADESYRKALSLA--------PNNGDVLNNYGAFLCAQ-GRPEEAMQQFERAL 130 (250)
T ss_pred hhhHHHHHHHHHhcC--------CCccchhhhhhHHHHhC-CChHHHHHHHHHHH
Confidence 457899999998764 33333556999999994 69998877655543
No 102
>PRK11189 lipoprotein NlpI; Provisional
Probab=22.49 E-value=2.6e+02 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHHhhcCCCCCHHHH
Q psy11573 28 RLFSEMVEAMKKVASLDVELTVEER 52 (248)
Q Consensus 28 eRydDmv~~mK~li~~~~eLs~EER 52 (248)
++.+-++..+.+++.. .+++++.+
T Consensus 40 ~~~e~~i~~~~~~l~~-~~~~~~~~ 63 (296)
T PRK11189 40 LQQEVILARLNQILAS-RDLTDEER 63 (296)
T ss_pred hHHHHHHHHHHHHHcc-ccCCcHhh
Confidence 4566777777777754 34666654
No 103
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.01 E-value=81 Score=22.23 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.2
Q ss_pred HhcCHHHHHHHHHHHhh
Q psy11573 26 LFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 26 qaeRydDmv~~mK~li~ 42 (248)
+.|+|+++.+|+++++.
T Consensus 35 qlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 35 QLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HTT-HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 57899999999999876
No 104
>KOG0553|consensus
Probab=21.90 E-value=2.3e+02 Score=26.70 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=14.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q psy11573 34 VEAMKKVASLDVELTVEERNLLSVAYKN 61 (248)
Q Consensus 34 v~~mK~li~~~~eLs~EERnLLSvAYKn 61 (248)
+.++++.+. .+..|.++--.+-|+.+.
T Consensus 11 ~~~~~~~~~-~~~~s~~~~esleva~qc 37 (304)
T KOG0553|consen 11 IQFLKQKSS-FGWISEDGAESLEVAIQC 37 (304)
T ss_pred HHhHHHHhh-cCCCCCcchhHHHHhHHH
Confidence 455555544 345565555556555554
No 105
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=21.24 E-value=1.1e+03 Score=25.78 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=25.4
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCCC
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVEL 47 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~eL 47 (248)
.+++|.+....|+|++++..++++++.+|+-
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~ 145 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPE 145 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCC
Confidence 3577778888899999999999998876653
No 106
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=21.12 E-value=1.6e+02 Score=22.29 Aligned_cols=43 Identities=35% Similarity=0.457 Sum_probs=18.4
Q ss_pred CcccccchhhhhhhchhHHHhhHHHHhcCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy11573 1 MTRDRLLGGYLADLQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSV 57 (248)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~laeqaeRydDmv~~mK~li~~~~eLs~EERnLLSv 57 (248)
|.||--+|-.-.+. ..+|+. +...++| +++..||+||..+|+.
T Consensus 1 m~RD~klGKls~d~-y~~qkv----------EIL~ALr---kLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 1 MDRDVKLGKLSKDV-YTQQKV----------EILTALR---KLGEKLSPEEEAFLEA 43 (78)
T ss_dssp ------S-SSHHHH-HHHHHH----------HHHHHHH---HTT----HHHHHHHHH
T ss_pred CccccccCCCcHHH-HHHHHH----------HHHHHHH---HhcCCCCHHHHHHHHH
Confidence 56777777655555 111111 3344444 4799999999999986
No 107
>KOG4234|consensus
Probab=20.83 E-value=1.1e+02 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=26.5
Q ss_pred hHHHhhHHHHhcCHHHHHHHHHHHhhcCCC
Q psy11573 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVE 46 (248)
Q Consensus 17 ~~~~a~laeqaeRydDmv~~mK~li~~~~e 46 (248)
|..+|.+.++.+.|+++++-.|++.+.+|.
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 457899999999999999999999987663
No 108
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.63 E-value=1.3e+02 Score=22.27 Aligned_cols=27 Identities=26% Similarity=0.096 Sum_probs=21.7
Q ss_pred hhHHHhhHHHHhcCHHHHHHHHHHHhh
Q psy11573 16 PVQQLSHFRFLFRLFSEMVEAMKKVAS 42 (248)
Q Consensus 16 ~~~~~a~laeqaeRydDmv~~mK~li~ 42 (248)
.+..+|--++++|+|++++.+-+..++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 355677788889999999988888776
No 109
>KOG0547|consensus
Probab=20.53 E-value=1.1e+02 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHH------HHHhCChHHHHHHHHHHHH
Q psy11573 139 ENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFY------YEILNSPDRACRLAKAAFD 193 (248)
Q Consensus 139 e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~------yEil~~~~~A~~iAk~afd 193 (248)
+.|.++|.+|++++-.+ +||| |+.+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 110
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=20.52 E-value=1.2e+02 Score=26.83 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q psy11573 137 AAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 194 (248)
Q Consensus 137 ~~e~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEil~~~~~A~~iAk~afd~ 194 (248)
.-+.|.++|++|..- .- .| ..++...+|+.|||..||.
T Consensus 14 ~Ye~A~~~Ye~av~n---g~---~~--------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 14 AYETARQAYEEAVAN---GS---SP--------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHHC---T-----H--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CC---CH--------------HHHHHHHHHHhHHHHHHhH
Confidence 357899999999751 11 12 1257788999999999984
Done!