RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11573
(248 letters)
>gnl|CDD|215815 pfam00244, 14-3-3, 14-3-3 protein.
Length = 236
Score = 348 bits (895), Expect = e-123
Identities = 148/218 (67%), Positives = 171/218 (78%), Gaps = 17/218 (7%)
Query: 32 EMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKLEM 91
+MVEAMKKV L EL+VEERNLLSVAYKNVIGARRASWRIISSIEQKEE+KG E K+++
Sbjct: 19 DMVEAMKKVVELKEELSVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEKKVKL 78
Query: 92 IRQYRTQV----RPPCIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGTER 134
I++YR +V C IL + F +KGDY+RYLAEFA+G ER
Sbjct: 79 IKEYRKKVEEELINICNDILELLDKHLIPKASSPESKVFYLKMKGDYYRYLAEFASGDER 138
Query: 135 KEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 194
KEAA+ +L AYK+A +IA ELPPTHPIRLGLALNFSVFYYEILNSP++AC LAK AFD+
Sbjct: 139 KEAADKALEAYKAALEIAEKELPPTHPIRLGLALNFSVFYYEILNSPEKACELAKQAFDE 198
Query: 195 AIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDG 232
AIAELDTLSE+SYKDSTLIMQLLRDNLTLWTSD + +
Sbjct: 199 AIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDEEEEE 236
>gnl|CDD|206757 cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isoform of 14-3-3
protein. 14-3-3 protein epsilon isoform (isoform (also
known as tyrosine 3-monooxygenase/ tryptophan
5-monooxygenase activation protein, epsilon polypeptide)
is encoded by the YWHAE gene in humans and is involved
in cancer cell survival and growth. It interacts with
CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting
its role in diverse biochemical activities related to
signal transduction, such as cell division and
regulation of insulin sensitivity. Overexpression of
14-3-3 epsilon in primary hepatocellular carcinoma (HCC)
tissues predicts a high risk of extrahepatic metastasis
and worse survival, and is a potential therapeutic
target. It has also been implicated in the pathogenesis
of small cell lung cancer. 14-3-3 epsilon overexpression
protects colorectal cancer and endothelial cells from
oxidative stress-induced apoptosis, while its
suppression by non-steroidal anti-inflammatory drugs
induces cancer and endothelial cell death. Cellular
levels of 14-3-3 epsilon could possibly serve as an
important regulator of cell survival in response to
oxidative stress and other death signals. 14-3-3 domains
are an essential part of 14-3-3 proteins, a ubiquitous
class of regulatory, phosphoserine/threonine-binding
proteins found in all eukaryotic cells, including yeast,
protozoa and mammalian cells.
Length = 230
Score = 337 bits (864), Expect = e-118
Identities = 170/214 (79%), Positives = 181/214 (84%), Gaps = 17/214 (7%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ EMVE+MKKVA +DVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKG EDKL
Sbjct: 17 YDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKL 76
Query: 90 EMIRQYRTQV----RPPCIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGT 132
+MIR+YR QV + C IL + F +KGDYHRYLAEFATG
Sbjct: 77 KMIREYRQQVEKELKDICNDILDVLDKHLIPAANSGESKVFYYKMKGDYHRYLAEFATGN 136
Query: 133 ERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192
+RKEAAENSLVAYK+ASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF
Sbjct: 137 DRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 196
Query: 193 DDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTS 226
DDAIAELDTLSE+SYKDSTLIMQLLRDNLTLWTS
Sbjct: 197 DDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 230
>gnl|CDD|128412 smart00101, 14_3_3, 14-3-3 homologues. 14-3-3 homologues mediates
signal transduction by binding to
phosphoserine-containing proteins. They are involved in
growth factor signalling and also interact with MEK
kinases.
Length = 244
Score = 320 bits (821), Expect = e-111
Identities = 159/228 (69%), Positives = 178/228 (78%), Gaps = 19/228 (8%)
Query: 30 FSEMVEAMKKVA-SLDV-ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAED 87
+ EMVE M+KVA ++D ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE++G ED
Sbjct: 17 YEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNED 76
Query: 88 KLEMIRQYRTQVRPPCIRI-----------------LAHNVYFRNTLKGDYHRYLAEFAT 130
+ I++YR ++ +I A + F +KGDYHRYLAEF T
Sbjct: 77 HVASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKT 136
Query: 131 GTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 190
G ERKEAAEN+LVAYKSA DIA+ ELPPTHPIRLGLALNFSVFYYEILNSPDRAC LAK
Sbjct: 137 GAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 196
Query: 191 AFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDGKDEEGE 238
AFD+AIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD+Q DG DE E
Sbjct: 197 AFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGADEIKE 244
>gnl|CDD|227373 COG5040, BMH1, 14-3-3 family protein [Signal transduction
mechanisms].
Length = 268
Score = 306 bits (786), Expect = e-106
Identities = 145/230 (63%), Positives = 177/230 (76%), Gaps = 19/230 (8%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ EMVE MK VAS EL+VEERNLLSVAYKNVIGARRASWRI+SSIEQKEE+KG ++
Sbjct: 21 YEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80
Query: 90 EMIRQYRTQVRPPCIRI------------------LAHNVYFRNTLKGDYHRYLAEFATG 131
E+I++YR ++ +I V++ +KGDY+RYLAEF+ G
Sbjct: 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYK-MKGDYYRYLAEFSVG 139
Query: 132 TERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 191
R+EAA++SL AYK+AS+IA TELPPTHPIRLGLALNFSVFYYEILNSPD+AC LAK A
Sbjct: 140 EAREEAADSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQA 199
Query: 192 FDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDGKDEEGEFEA 241
FD+AI+ELDTLSE+SYKDSTLIMQLLRDNLTLWTSD + +++EG+ +
Sbjct: 200 FDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEYSAQEDEGQQQQ 249
>gnl|CDD|206762 cd10026, 14-3-3_plant, Plant 14-3-3 protein domain. Plant 14-3-3
isoforms, similar to their highly conserved homologs in
mammals, bind to phosphorylated target proteins to
modulate their function. They have been implicated in a
variety of physiological functions; in particular,
abiotic and biotic stress responses, primary metabolism,
as well as various aspects of plant growth and
development. They function through the regulation of a
diverse range of proteins including transcription
factors, kinases, structural proteins, ion channels as
well as pathogen defense-related proteins. The 14-3-3
proteins are affected transcriptionally as well as
functionally by the environment of the plant, both
intracellular and extracellular, thus playing a key role
in the response to environmental stress, pathogens and
light conditions. Plant 14-3-3 proteins have been
divided into epsilon-like groups and non-epsilon groups
based on phylogenetic clustering. They have a varying
number of isoforms (for example, Arabidopsis has
thirteen known protein isoforms, cotton has six) with
variation in their affinity for specific binding
partners, suggesting specific roles in specific
processes.
Length = 237
Score = 305 bits (783), Expect = e-106
Identities = 154/221 (69%), Positives = 172/221 (77%), Gaps = 19/221 (8%)
Query: 30 FSEMVEAMKKVASL--DVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAED 87
+ EMVE M+KVA ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE+KG E+
Sbjct: 17 YDEMVEFMEKVAKSVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEE 76
Query: 88 KLEMIRQYRTQVRPP----CIRIL-------------AHNVYFRNTLKGDYHRYLAEFAT 130
+ IR+YR++V C IL + F +KGDYHRYLAEF T
Sbjct: 77 HVNSIREYRSKVENELSKICDGILKLLDAHLIPSAASGESKVFYLKMKGDYHRYLAEFKT 136
Query: 131 GTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 190
G ERKEAAE++L+AYK+A DIA+TEL PTHPIRLGLALNFSVFYYEILNSPDRAC LAK
Sbjct: 137 GAERKEAAESTLLAYKAAQDIALTELAPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQ 196
Query: 191 AFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGD 231
AFD+AIAELDTL E+SYKDSTLIMQLLRDNLTLWTSDMQ +
Sbjct: 197 AFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDE 237
>gnl|CDD|206763 cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domain. This family
containing fungal 14-3-3 domains includes the yeasts
Saccharomyces cerevisiae (BMH1 and BMH2) and
Schizosaccharomyces pombe (rad24 and rad25) isoforms.
They possess distinctively variant C-terminal segments
that differentiate them from the mammalian isoforms; the
C-terminus is longer and BMH1/2 isoforms contain
polyglutamine (polyQ) sequences of unknown function. The
C-terminal segments of yeast 14-3-3 isoforms may thus
behave in a different manner compared to the higher
eukaryote isoforms. Yeast 14-3-3 proteins bind to
numerous proteins involved in a variety of yeast
cellular processes making them excellent model organisms
for elucidating the function of the 14-3-3 protein
family. BMH1 and BMH2 are positive regulators of
rapamycin-sensitive signaling via TOR kinases while they
play an inhibitory role in Rtg3p-dependent transcription
involved in retrograde signaling. 14-3-3 domains are an
essential part of 14-3-3 proteins, a ubiquitous class of
regulatory, phosphoserine/threonine-binding proteins
found in all eukaryotic cells, including yeast, protozoa
and mammalian cells.
Length = 231
Score = 304 bits (779), Expect = e-105
Identities = 154/215 (71%), Positives = 174/215 (80%), Gaps = 17/215 (7%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ EMVE MKKVAS D ELTVEERNLLSVAYKNVIGARRASWRI+SSIEQKEE+KG E ++
Sbjct: 17 YEEMVENMKKVASSDQELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNESQV 76
Query: 90 EMIRQYRTQVRPP----CIRILA-------------HNVYFRNTLKGDYHRYLAEFATGT 132
+I++YR+++ C IL+ + F +KGDYHRYLAEFA G
Sbjct: 77 ALIKEYRSKIESELTKICDDILSVLDKHLIPSATTGESKVFYYKMKGDYHRYLAEFAVGD 136
Query: 133 ERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192
+RKEAA++SL AYK+ASDIA+TELPPTHPIRLGLALNFSVFYYEILNSPD AC LAK AF
Sbjct: 137 KRKEAADSSLEAYKAASDIAVTELPPTHPIRLGLALNFSVFYYEILNSPDSACHLAKQAF 196
Query: 193 DDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSD 227
DDAIAELDTLSE+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 197 DDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD 231
>gnl|CDD|206755 cd08774, 14-3-3, 14-3-3 domain. 14-3-3 domain is an essential part
of 14-3-3 proteins, a ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells. 14-3-3 proteins play important roles in
many biological processes that are regulated by
phosphorylation, including cell cycle regulation, cell
proliferation, protein trafficking, metabolic regulation
and apoptosis. More than 300 binding partners of the
14-3-3 domain have been identified in all subcellular
compartments and include transcription factors,
signaling molecules, tumor suppressors, biosynthetic
enzymes, cytoskeletal proteins and apoptosis factors.
14-3-3 binding can alter the conformation, localization,
stability, phosphorylation state, activity as well as
molecular interactions of a target protein. They
function only as dimers, some preferring strictly
homodimeric interaction, while others form heterodimers.
Binding of the 14-3-3 domain to its target occurs in a
phosphospecific manner where it binds to one of two
consensus sequences of their target proteins; RSXpSXP
(mode-1) and RXXXpSXP (mode-2). In some instances,
14-3-3 domain containing proteins are involved in
regulation and signaling of a number of cellular
processes in phosphorylation-independent manner. Many
organisms express multiple isoforms: there are seven
mammalian 14-3-3 family members (beta, gamma, eta,
theta, epsilon, sigma, zeta), each encoded by a distinct
gene, while plants contain up to 13 isoforms. The
flexible C-terminal segment of 14-3-3 isoforms shows the
highest sequence variability and may significantly
contribute to individual isoform uniqueness by playing
an important regulatory role by occupying the ligand
binding groove and blocking the binding of inappropriate
ligands in a distinct manner. Elevated amounts of 14-3-3
proteins are found in the cerebrospinal fluid of
patients with Creutzfeldt-Jakob disease. In protozoa,
like Plasmodium or Cryptosporidium parvum 14-3-3
proteins play an important role in key steps of parasite
development.
Length = 225
Score = 294 bits (756), Expect = e-102
Identities = 131/211 (62%), Positives = 160/211 (75%), Gaps = 19/211 (9%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ +MV+ MK+VA L+ ELT EERNLLSVAYKNV+G+RRASWRI+SSIEQKE +KG E+KL
Sbjct: 16 YDDMVKYMKQVAELNGELTKEERNLLSVAYKNVVGSRRASWRILSSIEQKESSKGNEEKL 75
Query: 90 EMIRQYRTQVR------------------PPCIRILAHNVYFRNTLKGDYHRYLAEFATG 131
++I++Y+ ++ P V++ +KGDY+RYLAEFA+G
Sbjct: 76 KLIKEYKEKIEKELKDICNDILDLIDKHLIPSATDPESKVFY-LKMKGDYYRYLAEFASG 134
Query: 132 TERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 191
ERKEAAE + AY+ A +IA LPPTHPIRLGLALNFSVFYYEILN P+ AC+LAK A
Sbjct: 135 DERKEAAEKAKKAYQEALEIAKKLLPPTHPIRLGLALNFSVFYYEILNDPEEACKLAKKA 194
Query: 192 FDDAIAELDTLSEDSYKDSTLIMQLLRDNLT 222
FD+AIAELDTLSE+SYKDSTLIMQLLRDNLT
Sbjct: 195 FDEAIAELDTLSEESYKDSTLIMQLLRDNLT 225
>gnl|CDD|206764 cd11310, 14-3-3_1, 14-3-3 protein domain. This 14-3-3 domain
family includes proteins in Caenorhabditis elegans, the
silkworm (Bombyx mori) as well as barley (Hordeum
vulgare). In C. elegans, 14-3-3 proteins are SIR-2.1
binding partners which induce transcriptional activation
of DAF-16 during stress and are required for the
life-span extension conferred by extra copies of
sir-2.1. In B. mori, the 14-3-3 proteins are expressed
widely in larval and adult tissues, including the brain,
fat body, Malpighian tube, silk gland, midgut, testis,
ovary, antenna, and pheromone gland, and interact with
the N-terminal fragment of Hsp60, suggesting that 14-3-3
(a molecular adaptor) and Hsp60 (a molecular chaperone)
work together to achieve a wide range of cellular
functions in B. mori. In barley aleurone cells, 14-3-3
proteins and members of the ABF transcription factor
family have a regulatory function in the gibberellic
acid (GA) pathway since the balance of GA and abscisic
acid (ABA) is a determining factor during transition of
embryogenesis and seed germination. 14-3-3 is an
essential part of 14-3-3 proteins, a ubiquitous class of
regulatory, phosphoserine/threonine-binding proteins
found in all eukaryotic cells, including yeast, protozoa
and mammalian cells.
Length = 230
Score = 250 bits (640), Expect = 2e-84
Identities = 134/215 (62%), Positives = 157/215 (73%), Gaps = 19/215 (8%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ +M AMKKV VEL+ EERNLLSVAYKNV+GARR+SWR+ISSIEQK E G+E K
Sbjct: 18 YDDMAAAMKKVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQ 75
Query: 90 EMIRQYRTQV----RPPCIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGT 132
+M ++YR +V R C +L + F +KGDY+RYLAE ATG
Sbjct: 76 QMAKEYREKVEKELREICYDVLGLLDKFLIPKASNPESKVFYLKMKGDYYRYLAEVATGD 135
Query: 133 ERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192
R E+S AY+ A DI+ ++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LAK AF
Sbjct: 136 TRNSVVEDSQKAYQEAFDISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 195
Query: 193 DDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSD 227
DDAIAELDTL+EDSYKDSTLIMQLLRDNLTLWTSD
Sbjct: 196 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 230
>gnl|CDD|206758 cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta isoforms of 14-3-3
protein. 14-3-3 protein beta and zeta isoform (also
known as tyrosine 3-monooxygenase/tryptophan
5-monooxygenase activation protein, beta and zeta
polypeptide) are encoded by the YWHAB gene and YWHAZ
gene in humans. They have been linked to mitogenic
signaling and the cell cycle machinery, and to cancer
initiation and progression, respectively. The beta
isoform has been shown to interact with RAF1 and CDC25
phosphatases and its overexpression is associated with
invasion, migration, metastasis and proliferation of
tumor cells and its elevated levels are correlated with
tumor size, the number of lymph node metastases and a
reduced survival rate. It is significantly overexpressed
in lung cancer tissues, mutated chronic lymphocytic
leukemia (M-CLL), gastric cancer tissues, aflatoxin
B1-induced rat hepatocellular carcinoma K1 and K2 cells,
as well as renal cell carcinoma cysts, and can
potentially be used as a diagnostic and prognostic
biomarker in the cancer. Numerous proteins involved in
anti-apoptosis and tumor progression were also found to
be differentially expressed in gastric cancer cells
where 14-3-3 beta is overexpressed. 14-3-3 beta also
interacts with human Dapper1 (hDpr1), a key negative
regulator of Wnt signaling, via hDpr1 phosphorylation by
protein kinase A, thus attenuating the ability of hDpr1
to promote Dishevelled (Dvl) degradation, and
subsequently enhancing Wnt signaling. The zeta isoform
is ubiquitously expressed and localized to most
subcellular regions, including the cytoplasm, plasma
membrane, mitochondria, and nucleus. Its overexpression
and gene amplification in multiple cancers are
correlated with poor prognosis and chemoresistance in
cancer patients. 14-3-3 zeta has been identified as a
biomarker with high sensitivity and specificity for
diagnosis and prognosis in multiple tumor types,
including hepatocellular carcinoma, head and neck
cancer, indicating a potential clinical application for
using 14-3-3 zeta in selecting treatment options and
predicting cancer outcome. It also interacts with IRS1
protein, suggesting a role in regulating insulin
sensitivity. 14-3-3 domains are an essential part of
14-3-3 proteins, a ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 229
Score = 244 bits (625), Expect = 4e-82
Identities = 129/214 (60%), Positives = 154/214 (71%), Gaps = 19/214 (8%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ +M MK V EL+ EERNLLSVAYKNV+GARR+SWR++SSIEQK E GAE K
Sbjct: 18 YDDMAACMKAVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE--GAEKKQ 75
Query: 90 EMIRQYR----TQVRPPCIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGT 132
+M R+YR T++R C +L A + F +KGDY+RYLAE A G
Sbjct: 76 QMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGD 135
Query: 133 ERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192
++K E S AY+ A +I+ E+ PTHPIRLGLALNFSVFYYEILNSP++AC LAK AF
Sbjct: 136 DKKGIVEQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAF 195
Query: 193 DDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTS 226
D+AIAELDTLSE+SYKDSTLIMQLLRDNLTLWTS
Sbjct: 196 DEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 229
>gnl|CDD|206759 cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in mice, tau in
human), an isoform of 14-3-3 protein. 14-3-3 tau/theta
(tau in humans, theta in mice) isoform (also known as
tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase
activation protein, theta polypeptide) is encoded by the
YWHAQ gene in humans and plays an important role in
controlling apoptosis through interactions with ASK1,
c-jun NH-terminal kinase, and p38 mitogen-activated
protein kinase (MAPK). Its interaction with CDC25c
regulates entry into the cell cycle and subsequent
interaction with Bad prevents apoptosis. 14-3-3 theta
protein expression is induced in patients with
amyotrophic lateral sclerosis. 14-3-3 tau is often
overexpressed in breast cancer, which is associated with
the downregulation of p21, a p53 target gene, and thus
leads to tamoxifen resistance in MCF7 breast cancer
cells and shorter patient survival. Therefore, 14-3-3
tau may be a potential therapeutic target in breast
cancer. Additionally, 14-3-3 theta mediates
nucleocytoplasmic shuttling of the coronavirus
nucleocapsid protein which causes severe acute
respiratory syndrome. 14-3-3 domain is an essential part
of 14-3-3 proteins, a ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 234
Score = 242 bits (619), Expect = 5e-81
Identities = 125/215 (58%), Positives = 152/215 (70%), Gaps = 19/215 (8%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ +M MK V EL+ EERNLLSVAYKNV+G RR++WR+ISSIEQK + ++ KL
Sbjct: 19 YDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTD--TSDKKL 76
Query: 90 EMIRQYRTQV----RPPCIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGT 132
++++ YR +V R C +L + F +KGDY RYLAE A G
Sbjct: 77 QLVKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGD 136
Query: 133 ERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192
+RK+ ENS AY+ A DI+ E+ PTHPIRLGLALNFSVFYYEILN+P+ AC LAK AF
Sbjct: 137 DRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAF 196
Query: 193 DDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSD 227
D+AIAELDTL+EDSYKDSTLIMQLLRDNLTLWTSD
Sbjct: 197 DEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 231
>gnl|CDD|206760 cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of 14-3-3 protein.
14-3-3 gamma isoform (also known as tyrosine
3-monooxygenase/tryptophan 5-monooxygenase activation
protein, gamma polypeptide) is encoded by the YWHAG gene
in humans and is induced by growth factors in human
vascular smooth muscle cells. It is also highly
expressed in skeletal and heart muscles, suggesting an
important role in muscle tissue. It has been shown to
interact with RAF1 and protein kinase C, proteins
involved in various signal transduction pathways. 14-3-3
gamma mediates Cdc25A proteolysis to block premature
mitotic entry after DNA damage. 14-3-3 gamma mediates
the interaction between Chk1 and Cdc25A; this complex
has an essential function in Cdc25A phosphorylation and
degradation to block premature mitotic entry after DNA
damage. Increased expression of 14-3-3 gamma in lung
cancer coincides with loss of functional p53, possibly
in a cooperative manner promoting genomic instability.
Also, during cell cycle, 14-3-3 gamma protects p21, a
cyclin-dependent kinase inhibitor, from degradation
mediated by the p53 suppressor MDMX, which may account
for elevation of p21 levels independent of p53 and in
response to DNA damage. Elevated expression of 14-3-3
gamma in human hepatocellular carcinoma predicts
extrahepatic metastasis and worse survival, thus making
this protein a candidate biomarker and a potential
target for novel therapies against the disease.
Length = 246
Score = 231 bits (590), Expect = 1e-76
Identities = 128/225 (56%), Positives = 152/225 (67%), Gaps = 19/225 (8%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ +M AMK V L+ L+ EERNLLSVAYKNV+GARR+SWR+ISSIEQK G E K+
Sbjct: 19 YDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKI 78
Query: 90 EMIRQYRTQVRPP-------------------CIRILAHNVYFRNTLKGDYHRYLAEFAT 130
EM+R YR ++ C + F +KGDY+RYLAE AT
Sbjct: 79 EMVRAYREKIEKELETVCQDVLSLLDNFLIKNCSETQYESKVFYLKMKGDYYRYLAEVAT 138
Query: 131 GTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 190
G +R E+S AY A +I+ + PTHPIRLGLALN+SVFYYEI N+P++AC LAK
Sbjct: 139 GEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKT 198
Query: 191 AFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDGKDE 235
AFDDAIAELDTL+EDSYKDSTLIMQLLRDNLTLWTSD Q D E
Sbjct: 199 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGE 243
>gnl|CDD|206761 cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-3-3 protein.
14-3-3 eta isoform (also known as tyrosine
3-monooxygenase/tryptophan 5-monooxygenase activation
protein, eta polypeptide) is expressed mainly in brain,
and is involved in hypothalamic-pituitary-adrenocortical
(HPA) axis regulation. In humans, it is encoded by the
YWHAH gene, and is a positional and functional candidate
for schizophrenia as well as bipolar disorder (BP). This
gene contains a 7 bp repeat sequence in its 5'
Untranslated Region (UTR), and early-onset schizophrenia
has been associated with changes in the number of this
repeat. 14-3-3 eta and gamma are found in the serum and
synovial fluid of patients with joint inflammation.
Specifically, 14-3-3 eta, which plays a regulatory role
in chondrogenic differentiation, is significantly
overexpressed in juvenile rheumatoid arthritis (JRA), a
chronic inflammatory disease often associated with
growth impairment. Overexpression of Gremlin 1, the bone
morphogenetic protein antagonist, may play an oncogenic
role in carcinomas of the uterine cervix, lung, ovary,
kidney, breast, colon, pancreas, and sarcoma, since it
functions by interaction with the 14-3-3 eta domain.
Therefore, Gremlin 1 and its binding protein 14-3-3 eta
could be appropriate targets for developing diagnostic
and therapeutic strategies against human cancers. 14-3-3
domain is an essential part of 14-3-3 proteins, a
ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 239
Score = 226 bits (577), Expect = 1e-74
Identities = 129/226 (57%), Positives = 155/226 (68%), Gaps = 23/226 (10%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ +M AMK V L+ L+ E+RNLLSVAYKNV+GARR+SWR+ISSIEQK G E KL
Sbjct: 18 YDDMASAMKSVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKL 77
Query: 90 EMIRQYRTQVRPP----CIRILA---------------HNVYFRNTLKGDYHRYLAEFAT 130
E ++ YR ++ C +LA + F +KGDY+RYLAE A+
Sbjct: 78 EKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVAS 137
Query: 131 GTERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 190
G ++ E S AYK A +I+ + PTHPIRLGLALNFSVFYYEI N+P++AC LAK
Sbjct: 138 GEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQ 197
Query: 191 AFDDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDGKDEE 236
AFDDAIAELDTL+EDSYKDSTLIMQLLRDNLTLWTSD Q DEE
Sbjct: 198 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQ----DEE 239
>gnl|CDD|206756 cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of 14-3-3 protein.
14-3-3 protein sigma isoform, also known as stratifin or
human mammary epithelial marker (HME) 1, has been most
directly linked to tumor development. In humans, it is
expressed by the SFN gene, strictly in stratified
squamous epithelial cells in response to DNA damage
where it is transcriptionally induced in a p53-dependent
manner, subsequently causing cell-cycle arrest at the
G2/M checkpoint. Up-regulation and down-regulation of
14-3-3 sigma expression have both been described in
tumors. For example, in human breast cancer, 14-3-3
sigma is predominantly down-regulated by CpG
methylation, acting as both a tumor suppressor and a
prognostic indicator, while in human scirrhous-type
gastric carcinoma (SGC), it is up-regulated and may play
an important role in SGC carcinogenesis and progression.
Loss of 14-3-3 sigma expression sensitizes tumor cells
to treatment with conventional cytostatic drugs, making
this protein an attractive therapeutic target. 14-3-3
domains are an essential part of 14-3-3 proteins, a
ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells.
Length = 242
Score = 222 bits (566), Expect = 6e-73
Identities = 118/223 (52%), Positives = 154/223 (69%), Gaps = 17/223 (7%)
Query: 30 FSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGAEDKL 89
+ +M MK EL+ EERNLLSVAYKNV+G +RA+WR++SSIEQK +G+E+K
Sbjct: 19 YEDMAAFMKGAVEKGEELSNEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKG 78
Query: 90 EMIRQYR----TQVRPPCIRIL-------------AHNVYFRNTLKGDYHRYLAEFATGT 132
+R+YR T+++ C +L A + F +KGDY+RYLAE ATG
Sbjct: 79 PEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGD 138
Query: 133 ERKEAAENSLVAYKSASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 192
++K +++ AY+ A DI+ E+PPT+PIRLGLALNFSVF+YEI NSP+ A LAK F
Sbjct: 139 DKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 198
Query: 193 DDAIAELDTLSEDSYKDSTLIMQLLRDNLTLWTSDMQGDGKDE 235
D+A+A+L TLSEDSYKDSTLIMQLLRDNLTLWT+D G+ E
Sbjct: 199 DEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGE 241
>gnl|CDD|217896 pfam04104, DNA_primase_lrg, Eukaryotic and archaeal DNA primase,
large subunit. DNA primase is the polymerase that
synthesises small RNA primers for the Okazaki fragments
made during discontinuous DNA replication. DNA primase
is a heterodimer of two subunits, the small subunit Pri1
(48 kDa in yeast), and the large subunit Pri2 (58 kDa in
the yeast S. cerevisiae). The large subunit of DNA
primase forms interactions with the small subunit and
the structure implicates that it is not directly
involved in catalysis, but plays roles in correctly
positioning the primase/DNA complex, and in the transfer
of RNA to DNA polymerase.
Length = 217
Score = 27.7 bits (62), Expect = 4.5
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 16/105 (15%)
Query: 2 TRDRLL-GGYLADLQPVQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYK 60
R L GY A L + L FR S + +A+ EL E +
Sbjct: 16 RRRVFLKKGY-AYLPKEELLRLLVEAFR--SRLEKALNLTYESLPELLEEYEEDI----- 67
Query: 61 NVIGARRASWRIISSIEQKEENKGAEDKLEMIRQYRTQVRPPCIR 105
R ++ + +E + + E I + + PPC+R
Sbjct: 68 -----REKLEPLLEHLS--KEAEDGKISAENIDKLSPEHFPPCMR 105
>gnl|CDD|237317 PRK13254, PRK13254, cytochrome c-type biogenesis protein CcmE;
Reviewed.
Length = 148
Score = 27.1 bits (61), Expect = 5.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 137 AAENSLVAYKSASDIAMTELPPTHPIRLG 165
A ++V + + S++A E P RLG
Sbjct: 29 ALRQNIVFFYTPSEVAEGEAPAGRRFRLG 57
>gnl|CDD|225671 COG3129, COG3129, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 292
Score = 27.5 bits (61), Expect = 6.6
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 62 VIGARRASWRIIS------SIEQKEENKGAEDKLEMIRQYRTQVRPPCI--RILAHNVYF 113
+IG WR + S+ + A LE + R Q I I+ N +
Sbjct: 95 LIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154
Query: 114 RNTL-KGDYHRYLAEFATGTERK 135
TL +H A+ G++RK
Sbjct: 155 DATLCNPPFHDSAADARAGSQRK 177
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 27.3 bits (61), Expect = 7.9
Identities = 8/60 (13%), Positives = 21/60 (35%)
Query: 17 VQQLSHFRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSI 76
++ + + E + ++ V + E ER ++ G ++A +S
Sbjct: 170 RKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFG 229
>gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional.
Length = 499
Score = 27.4 bits (61), Expect = 8.1
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 72 IISSIEQKEENKGAEDKLEMIRQYRTQVR-----PPCI----RILAHNVYFRNTLKGDYH 122
++S++E + + +GA D+++ + + +VR PP + +I+ F N L G Y
Sbjct: 303 MLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYPPLVTPSSQIVGTQAVF-NVLMGRYK 361
Query: 123 RYLAEFA 129
EFA
Sbjct: 362 VLTGEFA 368
>gnl|CDD|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
archaeal members also possess multiple family B DNA
polymerases (B1, B2 and B3). So far there is no specific
function(s) has been assigned for different members of
the archaea type B DNA polymerases. Phylogenetic
analyses of eubacterial, archaeal, and eukaryotic family
B DNA polymerases are support independent gene
duplications during the evolution of archaeal and
eukaryotic family B DNA polymerases.
Length = 372
Score = 27.3 bits (61), Expect = 8.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 25 FLFRLFSEMVEAMKKVASL-DVELTVEE-RNLLSVAYKNV 62
F+ LF E++E + V S D E E+ R+++ YK +
Sbjct: 242 FVKELFYEVIEILSAVNSPEDFEKAREKIRDIVKGVYKRL 281
>gnl|CDD|233697 TIGR02040, PpsR-CrtJ, transcriptional regulator PpsR. This model
represents the transcriptional regulator PpsR which is
strictly associated with photosynthetic proteobacteria
and found in photosynthetic operons. PpsR has been
reported to be a repressor. These proteins contain a
Helix-Turn_Helix motif of the "fis" type (pfam02954)
[Energy metabolism, Photosynthesis].
Length = 442
Score = 27.5 bits (61), Expect = 8.4
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 23 FRFLFRLFSEMVEAMKKVASLDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEN 82
+R + + S+ V + VE LL ++++G + Q+ E
Sbjct: 135 YRVVLEVSSDAVLLVDMSTGRIVEANSAAAALLGGVGQSLVGR---------AFPQEFEG 185
Query: 83 KGAEDKLEMIRQYRTQVRPPCIRILAHNVYFRNTLKGDYHR 123
+ E+ + +R R +RIL R + R
Sbjct: 186 RRREELMLTLRNVRATGSAAPVRILLRRSQKRLLVVVSVFR 226
>gnl|CDD|132784 cd06874, PX_KIF16B_SNX23, The phosphoinositide binding Phox
Homology domain of KIF16B kinesin or Sorting Nexin 23.
The PX domain is a phosphoinositide (PI) binding module
present in many proteins with diverse functions such as
cell signaling, vesicular trafficking, protein sorting,
and lipid modification, among others. KIF16B, also
called sorting nexin 23 (SNX23), is a family-3 kinesin
which harbors an N-terminal kinesin motor domain
containing ATP and microtubule binding sites, a ForkHead
Associated (FHA) domain, and a C-terminal PX domain. The
PX domain of KIF16B binds to
phosphatidylinositol-3-phosphate (PI3P) in early
endosomes and plays a role in the transport of early
endosomes to the plus end of microtubules. By regulating
early endosome plus end motility, KIF16B modulates the
balance between recycling and degradation of receptors.
SNXs make up the largest group among PX domain
containing proteins. They are involved in regulating
membrane traffic and protein sorting in the endosomal
system. The PX domain of SNXs binds PIs and targets the
protein to PI-enriched membranes. SNXs differ from each
other in PI-binding specificity and affinity, and the
presence of other protein-protein interaction domains,
which help determine subcellular localization and
specific function in the endocytic pathway.
Length = 127
Score = 26.2 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 228 MQGDGKDEEGEFEARVGVSD 247
++G GKDE EFE ++ V D
Sbjct: 10 LRGQGKDEHFEFEVKITVLD 29
>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase;
Provisional.
Length = 325
Score = 27.0 bits (60), Expect = 9.8
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 20/87 (22%)
Query: 61 NVIGARRA----SW------RIISSIEQKEENKGAEDKLEMIRQYRTQV---------RP 101
+V+G R SW ++I+ + Q+ K D M+R YR + R
Sbjct: 120 DVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHERS 179
Query: 102 PCIRILAHNVYFRNTLKGDYHRYLAEF 128
I ILA N + R ++ H EF
Sbjct: 180 TFIPILA-NTFARRAIEIPVHHAEREF 205
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.377
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,780,055
Number of extensions: 1203818
Number of successful extensions: 1167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 31
Length of query: 248
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 154
Effective length of database: 6,768,326
Effective search space: 1042322204
Effective search space used: 1042322204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)