BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11574
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T27|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine
Length = 271
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 44/61 (72%), Gaps = 5/61 (8%)
Query: 3 IATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHL 62
+ YQVGQLYSVAEASKNETGGGEG+EVLVNEP++ KGQYT KIYHL
Sbjct: 11 LPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK-----DDGEKGQYTHKIYHL 65
Query: 63 Q 63
Q
Sbjct: 66 Q 66
>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound
Phospholipid At 2.0 Angstroms Resolution
Length = 270
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 44/61 (72%), Gaps = 5/61 (8%)
Query: 3 IATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHL 62
+ YQVGQLYSVAEASKNETGGGEG+EVLVNEP++ KGQYT KIYHL
Sbjct: 10 LPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK-----DDGEKGQYTHKIYHL 64
Query: 63 Q 63
Q
Sbjct: 65 Q 65
>pdb|1UW5|A Chain A, Structure Of Pitp-Alpha Complexed To
Phosphatidylinositol
pdb|1UW5|B Chain B, Structure Of Pitp-Alpha Complexed To
Phosphatidylinositol
pdb|1UW5|C Chain C, Structure Of Pitp-Alpha Complexed To
Phosphatidylinositol
pdb|1UW5|D Chain D, Structure Of Pitp-Alpha Complexed To
Phosphatidylinositol
Length = 270
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 44/61 (72%), Gaps = 6/61 (9%)
Query: 3 IATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHL 62
+ YQVGQLYSVAEASKNETGGGEG+EVLVNEP++ KGQYT KIYHL
Sbjct: 11 LPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK------DGEKGQYTHKIYHL 64
Query: 63 Q 63
Q
Sbjct: 65 Q 65
>pdb|2A1L|A Chain A, Rat Pitp-Beta Complexed To Phosphatidylcholine
Length = 270
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%), Gaps = 6/54 (11%)
Query: 10 YQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQ 63
YQVGQLYSVAEASKNETGGGEGIEVL NEP++N G+ KGQYT KIYHL+
Sbjct: 17 YQVGQLYSVAEASKNETGGGEGIEVLKNEPYEN----DGE--KGQYTHKIYHLK 64
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 21 ASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKG---QYTKKIYHLQ 63
SK T +G VLV++ F N+P+ +F+K Q+TK + +Q
Sbjct: 134 TSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQ 179
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 IATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHL 62
+A G Q G LY A+ N GE V N+ D +P GG G + +
Sbjct: 281 LAIGTLYKQAGWLYGGGLAATNVLDYGEYPNVAYNKSTDQLP--GGAILNGNWDEVFPVD 338
Query: 63 QRSSRQI 69
R S+Q+
Sbjct: 339 PRDSQQV 345
>pdb|3B9K|B Chain B, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
pdb|3B9K|F Chain F, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
Length = 125
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 81 EKNPPKTSFFGFLALWFSGQNLHHHFRVPGKKTFNLIYRST 121
E+ PK +F FLA W S + + + V K+ N+I S+
Sbjct: 36 ERQDPKDKYFEFLASWSSSKGVLYGESVDKKR--NIILESS 74
>pdb|2ATP|B Chain B, Crystal Structure Of A Cd8ab Heterodimer
pdb|2ATP|D Chain D, Crystal Structure Of A Cd8ab Heterodimer
Length = 115
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 81 EKNPPKTSFFGFLALWFSGQNLHHHFRVPGKKTFNLIYRST 121
E+ PK +F FLA W S + + + V K+ N+I S+
Sbjct: 36 ERQDPKDKYFEFLASWSSSKGVLYGESVDKKR--NIILESS 74
>pdb|3DMM|D Chain D, Crystal Structure Of The Cd8 Alpha BetaH-2dd Complex
Length = 150
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 81 EKNPPKTSFFGFLALWFSGQNLHHHFRVPGKKTFNLIYRST 121
E+ PK +F FLA W S + + + V K+ N+I S+
Sbjct: 39 ERQDPKDKYFEFLASWSSSKGVLYGESVDKKR--NIILESS 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,443,145
Number of Sequences: 62578
Number of extensions: 172166
Number of successful extensions: 385
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 10
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)