Query psy11574
Match_columns 136
No_of_seqs 107 out of 178
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:00:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08888 SRPBCC_PITPNA-B_like L 100.0 1.3E-51 2.8E-56 341.5 8.4 119 2-128 8-144 (258)
2 cd07815 SRPBCC_PITP Lipid-bind 100.0 2.2E-51 4.8E-56 339.0 8.1 118 2-127 8-142 (251)
3 cd08889 SRPBCC_PITPNM1-2_like 100.0 2.5E-51 5.3E-56 340.1 8.1 118 2-127 9-144 (260)
4 cd08890 SRPBCC_PITPNC1_like Li 100.0 6.4E-51 1.4E-55 336.1 8.0 117 2-127 8-141 (250)
5 PF02121 IP_trans: Phosphatidy 100.0 1.1E-50 2.3E-55 334.9 6.9 118 2-127 9-144 (254)
6 KOG3668|consensus 100.0 2E-49 4.4E-54 328.0 8.0 119 2-128 10-146 (269)
7 PF04707 PRELI: PRELI-like fam 89.6 0.32 6.9E-06 37.3 2.7 40 51-93 33-72 (157)
8 PF12162 STAT1_TAZ2bind: STAT1 61.3 3.4 7.3E-05 23.4 0.4 11 2-12 7-17 (23)
9 PF11191 DUF2782: Protein of u 50.3 1.3 2.8E-05 32.0 -3.2 15 6-20 50-65 (105)
10 KOG2762|consensus 45.9 4.9 0.00011 36.3 -0.9 20 85-104 375-394 (429)
11 PF05208 ALG3: ALG3 protein; 36.3 11 0.00024 33.5 -0.1 14 85-98 354-367 (368)
12 KOG3336|consensus 30.9 72 0.0016 26.2 3.7 40 27-75 31-70 (185)
No 1
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=100.00 E-value=1.3e-51 Score=341.46 Aligned_cols=119 Identities=39% Similarity=0.465 Sum_probs=112.3
Q ss_pred ccccCchhhhhHHHHHHHHhhhcccCCCcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhhhhhccC
Q psy11574 2 HIATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELICVRKCE 81 (136)
Q Consensus 2 ~LPlTVeEYqIgQLYmVak~S~eeTggGeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp~~~~~~ 81 (136)
+||||||||||||||||||+|+++||||||||||+||||+++++ ++||||||||||+||+|+|||+++| +.+
T Consensus 8 ~lPltveEYqigQLY~Vak~S~eet~~GeGVEvl~Nepy~~~~~-----~~GqYT~Kiyhl~sklP~wir~~~P---~~a 79 (258)
T cd08888 8 ILPLSVEEYQVGQLYSVAEASKNETGGGEGIEVLVNEPYEKDDG-----EKGQYTHKIYHLQSKVPGFVRMLAP---EGS 79 (258)
T ss_pred eccCcHHHHHHHHHHHHHHhhHhhcCCCccEEEEeccccccCCC-----CcceeEEEEEEccccchhHHHHhCC---Ccc
Confidence 79999999999999999999999999999999999999999876 9999999999999999999999999 999
Q ss_pred CCCCCccccccc--eeEEE-----------ecccccCCCCCCCceecc-----cccccccccccc
Q psy11574 82 KNPPKTSFFGFL--ALWFS-----------GQNLHHHFRVPGKKTFNL-----IYRSTSPIYLKK 128 (136)
Q Consensus 82 ~~~~e~swn~~p--kt~~s-----------~~s~h~~~~~~~~N~fNL-----~~~~~~~i~~~~ 128 (136)
|.++|+|||||| +|+|+ ++|+|++|++++||+||| ..|.|..|||-.
T Consensus 80 l~v~EkaWNaYPy~~T~yt~~~~k~~F~i~IET~h~~d~g~~eNv~~L~~e~L~~ReV~~IDIa~ 144 (258)
T cd08888 80 LEIHEKAWNAYPYCRTIITNEYMKEDFLIIIETWHKPDLGTQENVHNLDPEEWKEVEVVYIDIAD 144 (258)
T ss_pred eEEehhhhcCCCceEEEEecCCcCccEEEEEEEEEcCCCCCccccccCCHHHHhCcEEEEEeccc
Confidence 999999999999 67665 688899999999999996 668999999954
No 2
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=100.00 E-value=2.2e-51 Score=338.96 Aligned_cols=118 Identities=36% Similarity=0.460 Sum_probs=112.5
Q ss_pred ccccCchhhhhHHHHHHHHhhhcccCCCcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhhhhhccC
Q psy11574 2 HIATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELICVRKCE 81 (136)
Q Consensus 2 ~LPlTVeEYqIgQLYmVak~S~eeTggGeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp~~~~~~ 81 (136)
+||||||||||||||||||+|+++||+|||||||+||||+++++ |+||||||||||+||+|+|+|+++| +.+
T Consensus 8 ~lPltveEYqigQLY~vak~S~eet~~GeGVEvl~Nepy~~~~~-----~~GqYT~Kiyhl~sklP~w~~~~~P---~~a 79 (251)
T cd07815 8 VLPLTVEEYQIGQLYMVAKASKEETGSGEGVEVLKNEPYEDENG-----GKGQYTHKIYHLGSKLPSWLRALAP---KSA 79 (251)
T ss_pred ecCCcHHHHHHHHHHHHHHhhHhhcCCCccEEEEeccCcccCCC-----CcceeEEEEEEccccchhHHHHhCC---ccc
Confidence 79999999999999999999999999999999999999999876 9999999999999999999999999 999
Q ss_pred CCCCCccccccc--eeEEE----------ecccccCCCCCCCceecc-----ccccccccccc
Q psy11574 82 KNPPKTSFFGFL--ALWFS----------GQNLHHHFRVPGKKTFNL-----IYRSTSPIYLK 127 (136)
Q Consensus 82 ~~~~e~swn~~p--kt~~s----------~~s~h~~~~~~~~N~fNL-----~~~~~~~i~~~ 127 (136)
|.++|+|||||| +|+|+ ++++|++|++++||+||| ..|.|..|||-
T Consensus 80 l~v~EkaWNaYPy~~T~y~~~~~~kf~i~IET~h~~d~g~~eNv~~L~~~~L~~ReV~~IDIa 142 (251)
T cd07815 80 LTIEEKSWNAYPYCKTVYSCPFFEKFSISIESMHKPDLGTQENAHNLSAEQLAQRKVVVIDIA 142 (251)
T ss_pred eEEEhhhhCCCCceeEEEecCCCCcEEEEEEEEEcCCCCCcccccCCCHHHHhCcEEEEEecc
Confidence 999999999999 67665 799999999999999997 67999999995
No 3
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=100.00 E-value=2.5e-51 Score=340.07 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=111.6
Q ss_pred ccccCchhhhhHHHHHHHHhhhccc-CCCcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhhhhhcc
Q psy11574 2 HIATGASMYQVGQLYSVAEASKNET-GGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELICVRKC 80 (136)
Q Consensus 2 ~LPlTVeEYqIgQLYmVak~S~eeT-ggGeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp~~~~~ 80 (136)
+||||||||||||||||||+|+++| |+|||||||+||||+++++ |+||||||||||+||+|+|+|+++| +.
T Consensus 9 ~lPltveEY~igQLYmvak~S~eet~g~GeGVEvl~Nepy~~~~~-----~~GqYT~Kiyhl~sklP~wl~~~~P---~~ 80 (260)
T cd08889 9 PLPMSVEEYRIAQLYMIQKKSREESKGEGSGVEILENRPYTDGPG-----GSGQYTHKIYHIGSHIPGWFRAILP---KS 80 (260)
T ss_pred ecCCcHHHHHHHHHHHHHHHhhhccCCCCceEEEEeccccccCCC-----CcceeEEEEEEccccChHHHHHhCC---Cc
Confidence 7999999999999999999999999 9999999999999999876 9999999999999999999999999 99
Q ss_pred CCCCCCccccccc--eeEE----------EecccccCCCCCCCceecc-----ccccccccccc
Q psy11574 81 EKNPPKTSFFGFL--ALWF----------SGQNLHHHFRVPGKKTFNL-----IYRSTSPIYLK 127 (136)
Q Consensus 81 ~~~~~e~swn~~p--kt~~----------s~~s~h~~~~~~~~N~fNL-----~~~~~~~i~~~ 127 (136)
+|.++|+|||||| +|+| ++|++|++|++++||+||| ..|+|..|||-
T Consensus 81 al~v~EkaWNaYPy~~T~yt~~~~~kF~i~IET~h~~d~g~~eNv~~L~~~~L~~ReV~~IDIa 144 (260)
T cd08889 81 ALRVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYFDDAGEQENVFNLSPAELRQRIIDFIDIV 144 (260)
T ss_pred ceEEehhHhCCCCceEEEEecCCccceEEEEEEEEcCCCCCccccccCCHHHhhCceEEEEecc
Confidence 9999999999999 6655 4789999999999999995 67899999995
No 4
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=100.00 E-value=6.4e-51 Score=336.07 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=110.0
Q ss_pred ccccCchhhhhHHHHHHHHhhhcccCCCcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhhhhhccC
Q psy11574 2 HIATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELICVRKCE 81 (136)
Q Consensus 2 ~LPlTVeEYqIgQLYmVak~S~eeTggGeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp~~~~~~ 81 (136)
+||||||||||||||||||+|+++||||||||||+||||+++++ |+||||||||||+||+|+|+|+++| +.
T Consensus 8 ~lPltveEY~igQLYmvak~S~eet~~geGVEvl~Nep~~~~~~-----~~GqYT~K~~hl~sklP~w~r~~~P---~~- 78 (250)
T cd08890 8 CMPLTVEEYRIGQLYMISRHSHEQSERGEGVEVVQNEPCEDPEH-----GNGQFTEKRVYLNSRLPSWARAVVP---KI- 78 (250)
T ss_pred eccCcHHHHHHHHHHHHHHhhHhhcCCCccEEEEeccccccCCC-----CccceeEEEEEccccChhHHHHhCC---cc-
Confidence 79999999999999999999999999999999999999999886 9999999999999999999999999 76
Q ss_pred CCCCCccccccc--eeEE----------EecccccCCCCCCCceecc-----ccccccccccc
Q psy11574 82 KNPPKTSFFGFL--ALWF----------SGQNLHHHFRVPGKKTFNL-----IYRSTSPIYLK 127 (136)
Q Consensus 82 ~~~~e~swn~~p--kt~~----------s~~s~h~~~~~~~~N~fNL-----~~~~~~~i~~~ 127 (136)
|.++|+|||||| +|+| ++++.|++|+++.+|+||| ..|.|..|||-
T Consensus 79 l~v~EkaWNaYPy~~T~y~~~~~~kf~i~IET~h~~d~g~~eN~~~L~~~~L~~ReV~~IDIa 141 (250)
T cd08890 79 FYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGKSENCIFLSEAELSEREVCHLDIA 141 (250)
T ss_pred eEEehhhhccCCceeeeeccCCcCcEEEEEEEEEcCCCCCccccccCCHHHhcCceEEEEecc
Confidence 889999999999 6654 5788999999999999997 57899999994
No 5
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []. More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.
Probab=100.00 E-value=1.1e-50 Score=334.88 Aligned_cols=118 Identities=37% Similarity=0.539 Sum_probs=103.2
Q ss_pred ccccCchhhhhHHHHHHHHhhhcccCC-CcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhhhhhcc
Q psy11574 2 HIATGASMYQVGQLYSVAEASKNETGG-GEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELICVRKC 80 (136)
Q Consensus 2 ~LPlTVeEYqIgQLYmVak~S~eeTgg-GeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp~~~~~ 80 (136)
+|||||||||||||||||++|+++|+| |||||||+||||+++++ ++||||||||||+||+|+|||+++| +.
T Consensus 9 ~lPltveEY~igQlY~vak~s~~et~g~GeGVEvl~Nep~~~~~g-----~~GqYT~K~y~l~sklP~~ir~l~P---~~ 80 (254)
T PF02121_consen 9 PLPLTVEEYQIGQLYMVAKASKEETGGDGEGVEVLKNEPYEDEPG-----GKGQYTHKIYHLASKLPSWIRALLP---KG 80 (254)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHCTSBT-TBEEEEEEEEEEE-TTS------EEEEEEEEEEETTTS-HHHHTTST---TT
T ss_pred eccccHHHHHHHHHHHHHHHhHhhccCCCcceEEEEecccccCCC-----CceeeEEEEEEecccChHHHHHhCC---Cc
Confidence 799999999999999999999999999 99999999999999986 9999999999999999999999999 99
Q ss_pred CCCCCCccccccc--eeEEEe----------cccccCCCCCCCceeccc-----cccccccccc
Q psy11574 81 EKNPPKTSFFGFL--ALWFSG----------QNLHHHFRVPGKKTFNLI-----YRSTSPIYLK 127 (136)
Q Consensus 81 ~~~~~e~swn~~p--kt~~s~----------~s~h~~~~~~~~N~fNL~-----~~~~~~i~~~ 127 (136)
++.++|+|||||| +|+|++ +++|++|++++||+|||+ .|.|..|||-
T Consensus 81 ~l~v~E~aWNaYPy~~T~~t~~~~~kF~i~IET~~~~d~G~~eNv~~L~~~~lk~reV~~IDI~ 144 (254)
T PF02121_consen 81 ALYVHEKAWNAYPYCKTVYTNPYMDKFSIKIETMHKPDNGTSENVFNLSPEELKKREVVFIDIA 144 (254)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTGGEEEEEEEEEESSSS--TTTT---HHHHTTSEEEEE-TT
T ss_pred eEEEEEEEecccceEEEEEecCCCCceEEEEEEEEcCCCCCcCcccCCCHHHhcCceEEEEEec
Confidence 9999999999999 777765 889999999999999985 5899999996
No 6
>KOG3668|consensus
Probab=100.00 E-value=2e-49 Score=328.00 Aligned_cols=119 Identities=34% Similarity=0.459 Sum_probs=110.7
Q ss_pred ccccCchhhhhHHHHHHHHhhhcccCCCcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhhhhhccC
Q psy11574 2 HIATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELICVRKCE 81 (136)
Q Consensus 2 ~LPlTVeEYqIgQLYmVak~S~eeTggGeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp~~~~~~ 81 (136)
+|||||||||||||||||++|++||+||+|||||+||||+++++ |+||||||||||+||+|+|+|++|| +.+
T Consensus 10 ~LPmTvdEY~vgqLy~Vs~~Sr~et~ggeGVEvl~nep~~dg~~-----g~GqyThKIyhl~sk~P~~~r~l~P---k~a 81 (269)
T KOG3668|consen 10 VLPMTVDEYQVGQLYMVSKKSREETGGGEGVEVLKNEPYTDGPG-----GSGQYTHKIYHLGSKVPAWLRSLLP---KGA 81 (269)
T ss_pred eccccHHHHHHHHHHHHHHhhhhccCCCcceEEEecCCCcCCCC-----CccceEEEEEEecccchHHHHHhCC---ccc
Confidence 79999999999999999999999999999999999999998776 9999999999999999999999999 999
Q ss_pred CCCCCccccccc--eeEEEe-----------cccccCCCCCCCceeccc-----ccccccccccc
Q psy11574 82 KNPPKTSFFGFL--ALWFSG-----------QNLHHHFRVPGKKTFNLI-----YRSTSPIYLKK 128 (136)
Q Consensus 82 ~~~~e~swn~~p--kt~~s~-----------~s~h~~~~~~~~N~fNL~-----~~~~~~i~~~~ 128 (136)
|.+.|+|||||| +|+||+ ++.|.+|++++||+|||. .|.+..|||-+
T Consensus 82 l~v~EesWNAYPy~rT~yTn~~~~d~F~i~IeT~~~~d~G~~eNvf~l~~~~~~~rei~~IDIa~ 146 (269)
T KOG3668|consen 82 LIVHEESWNAYPYTRTRYTNYYMKDKFSIKIETIYLDDAGTQENVFGLDPEDLNQREIVFIDIAD 146 (269)
T ss_pred eEEeeecccccceEEEEEecccccccceEEEEEEEcCCCCCCCCcccCChhhcceeEEEEEEeec
Confidence 999999999999 788876 778889999999999984 45667777754
No 7
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=89.55 E-value=0.32 Score=37.28 Aligned_cols=40 Identities=13% Similarity=-0.064 Sum_probs=28.9
Q ss_pred cceeEEEeEEEecCchhHHHHhhhhhhhccCCCCCCccccccc
Q psy11574 51 TKGQYTKKIYHLQRSSRQISRSELICVRKCEKNPPKTSFFGFL 93 (136)
Q Consensus 51 g~GQYT~KiyhL~sklP~wir~~lp~~~~~~~~~~e~swn~~p 93 (136)
|. -||+++..+...+|+|++.|++.. ..+.+-|+|+---.
T Consensus 33 g~-l~t~Rl~~~~~~~P~w~~kl~g~~--~~~~~~E~S~vD~~ 72 (157)
T PF04707_consen 33 GK-LHTKRLITKKNNLPRWLKKLIGVD--SECYIIEESIVDPK 72 (157)
T ss_pred Cc-EEEeeeeeeecCchHHHHHHhCcC--ceEEEEEEEEEECC
Confidence 44 899999999999999999999821 11334466555444
No 8
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=61.35 E-value=3.4 Score=23.40 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=6.0
Q ss_pred ccccCchhhhh
Q psy11574 2 HIATGASMYQV 12 (136)
Q Consensus 2 ~LPlTVeEYqI 12 (136)
.||||.|+|.-
T Consensus 7 mmPMSPddy~~ 17 (23)
T PF12162_consen 7 MMPMSPDDYDE 17 (23)
T ss_dssp ---S-HHHHHH
T ss_pred ccCCCHHHHHH
Confidence 48999999974
No 9
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=50.31 E-value=1.3 Score=31.96 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=11.7
Q ss_pred Cchhhhh-HHHHHHHH
Q psy11574 6 GASMYQV-GQLYSVAE 20 (136)
Q Consensus 6 TVeEYqI-gQLYmVak 20 (136)
++||||| ||+|||--
T Consensus 50 ~ieEyRv~G~l~~IkV 65 (105)
T PF11191_consen 50 TIEEYRVNGQLYMIKV 65 (105)
T ss_pred EEEEEEECCeEeeEEE
Confidence 5789998 78898743
No 10
>KOG2762|consensus
Probab=45.86 E-value=4.9 Score=36.35 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.3
Q ss_pred CCccccccceeEEEeccccc
Q psy11574 85 PKTSFFGFLALWFSGQNLHH 104 (136)
Q Consensus 85 ~e~swn~~pkt~~s~~s~h~ 104 (136)
.|-|||.||+|..|+--+|.
T Consensus 375 iE~~WNvYPsT~~SS~lL~~ 394 (429)
T KOG2762|consen 375 IELCWNVYPSTSLSSALLHC 394 (429)
T ss_pred HHHHhcccCCcchhhHHHHH
Confidence 39999999999999877773
No 11
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.31 E-value=11 Score=33.52 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=11.7
Q ss_pred CCccccccceeEEE
Q psy11574 85 PKTSFFGFLALWFS 98 (136)
Q Consensus 85 ~e~swn~~pkt~~s 98 (136)
.|-+||.||+|..|
T Consensus 354 ~E~~WNvyPST~~S 367 (368)
T PF05208_consen 354 IEYCWNVYPSTPLS 367 (368)
T ss_pred HHHHhcCcCCCcCC
Confidence 49999999987655
No 12
>KOG3336|consensus
Probab=30.89 E-value=72 Score=26.16 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=30.9
Q ss_pred CCCcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhh
Q psy11574 27 GGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELI 75 (136)
Q Consensus 27 ggGeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp 75 (136)
..--||-||..+=-++ | --+||+++-+.--+|+|+.+++-
T Consensus 31 ~hVi~VDvl~R~l~~~--------G-kL~TeRlit~~~~~P~w~~~LiG 70 (185)
T KOG3336|consen 31 THVIGVDVLDRKLDDS--------G-KLHTERLITIHQGLPSWIHKLIG 70 (185)
T ss_pred CceEEEeeeeeeeccC--------c-eEEEeeeeeeccCCcHHHHHHhC
Confidence 3445777776654332 4 67999999999999999999998
Done!