Query psy11574
Match_columns 136
No_of_seqs 107 out of 178
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:00:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 100.0 5.5E-51 1.9E-55 338.2 7.4 118 2-127 9-144 (270)
2 1xak_A SARS ORF7A accessory pr 12.8 56 0.0019 22.3 0.6 31 94-124 40-72 (83)
3 2idb_A 3-octaprenyl-4-hydroxyb 11.2 1.5E+02 0.0051 25.8 2.9 17 1-17 233-249 (505)
4 2k4y_A FEOA-like protein; GFT 9.7 22 0.00077 23.2 -2.3 42 1-42 1-52 (86)
5 2ag4_A GM2-AP, ganglioside GM2 7.5 1.9E+02 0.0065 21.1 1.8 20 51-70 112-134 (164)
6 1914_A Signal recognition part 6.9 63 0.0022 26.0 -1.2 41 91-131 166-210 (232)
7 2yny_A General control protein 6.4 2E+02 0.0069 20.5 1.4 22 12-33 26-47 (106)
8 1erd_A Pheromone ER-2; NMR {Eu 6.2 2.2E+02 0.0074 16.9 1.2 11 10-20 19-29 (40)
9 2ki0_A DS119; beta-alpha-beta, 6.1 67 0.0023 18.8 -1.0 11 123-133 14-24 (36)
10 2l7k_A Uncharacterized protein 5.6 2.5E+02 0.0085 19.0 1.4 14 3-16 2-15 (76)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=100.00 E-value=5.5e-51 Score=338.21 Aligned_cols=118 Identities=38% Similarity=0.465 Sum_probs=110.7
Q ss_pred ccccCchhhhhHHHHHHHHhhhcccCCCcceEEEEcccccCCCCCCCcccceeEEEeEEEecCchhHHHHhhhhhhhccC
Q psy11574 2 HIATGASMYQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQISRSELICVRKCE 81 (136)
Q Consensus 2 ~LPlTVeEYqIgQLYmVak~S~eeTggGeGVEVlkNEPy~~~~~~~~~~g~GQYT~KiyhL~sklP~wir~~lp~~~~~~ 81 (136)
+||||||||||||||||||+|+++||||||||||+||||++++| ++||||||||||+||+|+|+|+++| +.+
T Consensus 9 ~lPltveEY~igQlY~vak~S~~etg~GeGVEvl~Nepy~~~~g-----~~GqYT~Kiyhl~sklP~wi~~~~P---~~a 80 (270)
T 1kcm_A 9 ILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDG-----EKGQYTHKIYHLQSKVPTFVRMLAP---EGA 80 (270)
T ss_dssp EESSCHHHHHHHHHHHHHHHHTTCSSTTTTEEEEEEEEEECTTS-----CEEEEEEEEEECGGGSCHHHHTTSC---TTT
T ss_pred ecCCCHHHHHHHHHHHHHHhhHhhcCCCceEEEEeccccccCCC-----CccceEEEEEEccccChHHHHHhCC---ccc
Confidence 79999999999999999999999999999999999999998775 7999999999999999999999999 999
Q ss_pred CCCCCccccccc--eeEEE-----------ecccccCCCCCCCceecccc-----ccccccccc
Q psy11574 82 KNPPKTSFFGFL--ALWFS-----------GQNLHHHFRVPGKKTFNLIY-----RSTSPIYLK 127 (136)
Q Consensus 82 ~~~~e~swn~~p--kt~~s-----------~~s~h~~~~~~~~N~fNL~~-----~~~~~i~~~ 127 (136)
|.++|+|||||| +|+|+ +|+.|++|++++||+|||++ |.|..|||-
T Consensus 81 l~v~EkaWNayPy~~T~yt~~~~~~kF~i~IET~h~~d~g~~eNv~~L~~~~l~~reV~~IDIa 144 (270)
T 1kcm_A 81 LNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIA 144 (270)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTGGGEEEEEEEEEESSSSCCSSTTCCCHHHHTTCEEEEECTT
T ss_pred eEEEeehhccCcceeeEecCCCcCcceEEEEEEEEcCCCCCcccccCCChHHhcCceEEEEecc
Confidence 999999999999 66665 57778899999999999864 889999995
No 2
>1xak_A SARS ORF7A accessory protein; I-SET IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Sars coronavirus} SCOP: b.1.24.1 PDB: 1yo4_A
Probab=12.80 E-value=56 Score=22.29 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=18.1
Q ss_pred eeEEEecccccCCC--CCCCceecccccccccc
Q psy11574 94 ALWFSGQNLHHHFR--VPGKKTFNLIYRSTSPI 124 (136)
Q Consensus 94 kt~~s~~s~h~~~~--~~~~N~fNL~~~~~~~i 124 (136)
|+-+++-+.|..+. +..--+|.|.+||++|-
T Consensus 40 kfai~c~~t~f~f~c~d~trh~~qlrarsisp~ 72 (83)
T 1xak_A 40 KFALTCTSTHFAFACADGTRHTYQLRARSVSPK 72 (83)
T ss_dssp EEEEECCSEEEEEECTTSCEEEEEEEEECC---
T ss_pred ceeEEeecceEEEEEcCCCceeeeeeecccCcc
Confidence 45555555554322 34567999999999984
No 3
>2idb_A 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: 1PE; 2.90A {Escherichia coli} SCOP: b.45.1.3 d.333.1.1
Probab=11.16 E-value=1.5e+02 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.5
Q ss_pred CccccCchhhhhHHHHH
Q psy11574 1 MHIATGASMYQVGQLYS 17 (136)
Q Consensus 1 ~~LPlTVeEYqIgQLYm 17 (136)
|++|..++||.+|-+..
T Consensus 233 ~plP~g~~E~~~AG~L~ 249 (505)
T 2idb_A 233 TPVPDTLSEYAFAGLLR 249 (505)
T ss_dssp SCCCTTSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHc
Confidence 68999999999997654
No 4
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=9.73 E-value=22 Score=23.25 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=28.2
Q ss_pred CccccCchhhhhHHHHHHHHhhhccc----------CCCcceEEEEcccccC
Q psy11574 1 MHIATGASMYQVGQLYSVAEASKNET----------GGGEGIEVLVNEPFDN 42 (136)
Q Consensus 1 ~~LPlTVeEYqIgQLYmVak~S~eeT----------ggGeGVEVlkNEPy~~ 42 (136)
|.+-+++.+-+.||-+.|.+.+.+.. .-|.-|+|+.+.||.+
T Consensus 1 M~~~~~Ls~l~~G~~~~I~~i~~~~~~~~rL~~mGl~pG~~V~V~~~~p~~g 52 (86)
T 2k4y_A 1 MTKGIGLNEVEIKSKVKVIGIVPESKVRRKIMDMGIVRGTEIYIEGKAPMGD 52 (86)
T ss_dssp CCSCEEGGGCCTTCEEEEEEECTTSSHHHHHHHHTCCTTCEEEEEEECTTSC
T ss_pred CCCceEHHHCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCEEEEEEeCCCCC
Confidence 33346677778888777766653211 2477799999999864
No 5
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=7.54 E-value=1.9e+02 Score=21.09 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=15.2
Q ss_pred cceeEEEeE--EEecC-chhHHH
Q psy11574 51 TKGQYTKKI--YHLQR-SSRQIS 70 (136)
Q Consensus 51 g~GQYT~Ki--yhL~s-klP~wi 70 (136)
.+|.|+... ++|.. .+|+|+
T Consensus 112 ~~G~Y~l~~~~~~lp~~~lP~~l 134 (164)
T 2ag4_A 112 KEGTYSLPKSEFVVPDLELPSWL 134 (164)
T ss_dssp CSEEEEEEEEEEEECCCCCCTTC
T ss_pred CCcEEEEeeeEeecCcccccCcc
Confidence 689999765 77877 778665
No 6
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=6.94 E-value=63 Score=25.98 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=31.3
Q ss_pred ccc-eeEEEecccccCCCC---CCCceeccccccccccccccccc
Q psy11574 91 GFL-ALWFSGQNLHHHFRV---PGKKTFNLIYRSTSPIYLKKLKE 131 (136)
Q Consensus 91 ~~p-kt~~s~~s~h~~~~~---~~~N~fNL~~~~~~~i~~~~~~~ 131 (136)
+.| +|+|+.-.-|..|.. ..||.-.|-||+-...|+++|..
T Consensus 166 a~P~~tRy~~KY~~~~g~LvLKvTD~~~cLkYrT~ka~dl~rle~ 210 (232)
T 1914_A 166 ADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEK 210 (232)
T ss_dssp HCTTTCEEEEEEETTTTEEEEEEECSSSEEEEEECBGGGHHHHHH
T ss_pred hCCCceEEEEEEEcCCceEEEEEeeCCeEEEEECchHHHHHHHHH
Confidence 345 789999988876652 45566789999999999988754
No 7
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=6.42 E-value=2e+02 Score=20.52 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhhcccCCCcceE
Q psy11574 12 VGQLYSVAEASKNETGGGEGIE 33 (136)
Q Consensus 12 IgQLYmVak~S~eeTggGeGVE 33 (136)
-+|||.+++.--.-=|||.+|.
T Consensus 26 GSQLy~~s~sVA~~LGGGA~vn 47 (106)
T 2yny_A 26 KKLIYSLSQSVADRLGGGASVN 47 (106)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBC
T ss_pred HHHHHHHHHHHHHHhCCCceeC
Confidence 4799998775555458887764
No 8
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=6.21 E-value=2.2e+02 Score=16.89 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=8.5
Q ss_pred hhhHHHHHHHH
Q psy11574 10 YQVGQLYSVAE 20 (136)
Q Consensus 10 YqIgQLYmVak 20 (136)
|--|-|||.+-
T Consensus 19 ycqgplymtci 29 (40)
T 1erd_A 19 YCQGPLYMTCI 29 (40)
T ss_dssp GSCHHHHHHHH
T ss_pred cccCCeeEEEE
Confidence 77788898764
No 9
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=6.13 E-value=67 Score=18.76 Aligned_cols=11 Identities=73% Similarity=0.818 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy11574 123 PIYLKKLKEEE 133 (136)
Q Consensus 123 ~i~~~~~~~~~ 133 (136)
|-.+||||||.
T Consensus 14 peelkklkeea 24 (36)
T 2ki0_A 14 PEELKKLKEEA 24 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45688998874
No 10
>2l7k_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium difficile}
Probab=5.56 E-value=2.5e+02 Score=18.96 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=11.2
Q ss_pred cccCchhhhhHHHH
Q psy11574 3 IATGASMYQVGQLY 16 (136)
Q Consensus 3 LPlTVeEYqIgQLY 16 (136)
|.+||||.+.=-+|
T Consensus 2 ~~FTvEE~NLmciY 15 (76)
T 2l7k_A 2 IRLTIEETNLLSIY 15 (76)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHh
Confidence 68899998877666
Done!