RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11574
         (136 letters)



>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha;
           phospholipid binding protein, phospholipid transport,
           binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4
           PDB: 1t27_A* 1uw5_A* 2a1l_A*
          Length = 270

 Score = 74.7 bits (183), Expect = 2e-17
 Identities = 45/112 (40%), Positives = 54/112 (48%), Gaps = 16/112 (14%)

Query: 10  YQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQRSSRQI 69
           YQVGQLYSVAEASKNETGGGEG+EVLVNEP++          KGQYT KIYHLQ      
Sbjct: 17  YQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK-----DDGEKGQYTHKIYHLQSKVPTF 71

Query: 70  SRSELICVRKCEKNPPKTSFFGFLALWFSGQNLHHHFRVPG-KKTFNLIYRS 120
            R             P+ +       W +             K+ F +   +
Sbjct: 72  VRMLA----------PEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIET 113


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,060,330
Number of extensions: 107643
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 3
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)