RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11574
         (136 letters)



>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score = 84.4 bits (209), Expect = 2e-21
 Identities = 40/55 (72%), Positives = 43/55 (78%), Gaps = 5/55 (9%)

Query: 10 YQVGQLYSVAEASKNETGGGEGIEVLVNEPFDNVPLLGGKFTKGQYTKKIYHLQR 64
          YQVGQLYSVAEASKNETGGGEG+EVLVNEP++          KGQYT KIYHLQ 
Sbjct: 17 YQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK-----DDGEKGQYTHKIYHLQS 66


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 28.7 bits (63), Expect = 0.23
 Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 5/33 (15%)

Query: 99  GQNLHHH-----FRVPGKKTFNLIYRSTSPIYL 126
           GQ L        FRV G     ++  ST P   
Sbjct: 292 GQCLVGKVLDGDFRVTGINALRVVDGSTFPYTP 324


>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
           {Thermobifida fusca [TaxId: 2021]}
          Length = 298

 Score = 24.0 bits (51), Expect = 7.8
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 6/36 (16%)

Query: 96  WFSGQNLHHHFRVPGKKTFNLIYRSTSPIYLKKLKE 131
           W++G N      VPGK    ++Y      Y +   E
Sbjct: 257 WYTGAN------VPGKPRVFMLYVGGFHRYRQICDE 286


>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 184

 Score = 23.8 bits (50), Expect = 8.4
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 16  YSVAEASKNETGGGEGIEVLVNEPFDNVPLLG 47
            ++A+A         G++V   EP  + PL  
Sbjct: 142 AALADAITGGHVRAAGLDVFATEPCTDSPLFE 173


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,693
Number of extensions: 21465
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 5
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.0 bits)