BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11575
         (80 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T27|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine
          Length = 271

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 67/80 (83%)

Query: 1   MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
           M  YKLVT +FKW+G Q +VENFIHK E+RLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 191 MCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 250

Query: 61  TKKELDRQRLEGEVRGMKAD 80
           TK++LD  R +  V+GM AD
Sbjct: 251 TKRQLDEMRQKDPVKGMTAD 270


>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound
           Phospholipid At 2.0 Angstroms Resolution
          Length = 270

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 67/80 (83%)

Query: 1   MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
           M  YKLVT +FKW+G Q +VENFIHK E+RLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 190 MCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 249

Query: 61  TKKELDRQRLEGEVRGMKAD 80
           TK++LD  R +  V+GM AD
Sbjct: 250 TKRQLDEMRQKDPVKGMTAD 269


>pdb|2A1L|A Chain A, Rat Pitp-Beta Complexed To Phosphatidylcholine
          Length = 270

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 1   MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
           M  YKLVT +FKW+G Q +VENFI K E+R+FTN HRQ+FCWID+W DLTMEDIRR+E+E
Sbjct: 189 MCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNLHRQLFCWIDKWIDLTMEDIRRMEDE 248

Query: 61  TKKELDRQRLEGEVRGMKA 79
           T+KEL+  R +G VRG  A
Sbjct: 249 TQKELETMRKKGSVRGTSA 267


>pdb|1UW5|A Chain A, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
 pdb|1UW5|B Chain B, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
 pdb|1UW5|C Chain C, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
 pdb|1UW5|D Chain D, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
          Length = 270

 Score =  114 bits (284), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 63/77 (81%)

Query: 4   YKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKK 63
           YKLVT +FKW+G Q +VENFIHK ERRLFTNFHRQ+FCW+D+W DLT +DIRR EEETK+
Sbjct: 193 YKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTXDDIRRXEEETKR 252

Query: 64  ELDRQRLEGEVRGMKAD 80
           +LD  R +  V+G  AD
Sbjct: 253 QLDEXRQKDPVKGXTAD 269


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.140    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,330,034
Number of Sequences: 62578
Number of extensions: 78115
Number of successful extensions: 309
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 4
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)