BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11575
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00169|PIPNA_HUMAN Phosphatidylinositol transfer protein alpha isoform OS=Homo sapiens
GN=PITPNA PE=1 SV=2
Length = 270
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 67/80 (83%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFIHK ERRLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 190 MCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 249
Query: 61 TKKELDRQRLEGEVRGMKAD 80
TK++LD R + V+GM AD
Sbjct: 250 TKRQLDEMRQKDPVKGMTAD 269
>sp|P48738|PIPNA_RABIT Phosphatidylinositol transfer protein alpha isoform OS=Oryctolagus
cuniculus GN=PITPNA PE=3 SV=2
Length = 270
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 67/80 (83%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFIHK ERRLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 190 MCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 249
Query: 61 TKKELDRQRLEGEVRGMKAD 80
TK++LD R + V+GM AD
Sbjct: 250 TKRQLDEMRQKDPVKGMTAD 269
>sp|P53810|PIPNA_MOUSE Phosphatidylinositol transfer protein alpha isoform OS=Mus musculus
GN=Pitpna PE=1 SV=2
Length = 271
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 67/80 (83%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFIHK E+RLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 191 MCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 250
Query: 61 TKKELDRQRLEGEVRGMKAD 80
TK++LD R + V+GM AD
Sbjct: 251 TKRQLDEMRQKDPVKGMTAD 270
>sp|P16446|PIPNA_RAT Phosphatidylinositol transfer protein alpha isoform OS=Rattus
norvegicus GN=Pitpna PE=1 SV=2
Length = 271
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 67/80 (83%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFIHK E+RLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 191 MCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 250
Query: 61 TKKELDRQRLEGEVRGMKAD 80
TK++LD R + V+GM AD
Sbjct: 251 TKRQLDEMRQKDPVKGMTAD 270
>sp|Q2HJ54|PIPNA_BOVIN Phosphatidylinositol transfer protein alpha isoform OS=Bos taurus
GN=PITPNA PE=1 SV=3
Length = 270
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 67/80 (83%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFIHK ERRLFTNFHRQ+FCW+D+W DLTM+DIRR+E+E
Sbjct: 190 MCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEDE 249
Query: 61 TKKELDRQRLEGEVRGMKAD 80
TK++LD R + V+GM AD
Sbjct: 250 TKRQLDEMRQKDPVKGMTAD 269
>sp|Q5R6F0|PIPNB_PONAB Phosphatidylinositol transfer protein beta isoform OS=Pongo abelii
GN=PITPNB PE=2 SV=3
Length = 272
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 66/79 (83%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFI K E+R+FTNFHRQ+FCWID+W DLTMEDIRR+E+E
Sbjct: 190 MCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDE 249
Query: 61 TKKELDRQRLEGEVRGMKA 79
T+KEL+ R +G+VRG A
Sbjct: 250 TQKELETLRNQGQVRGTSA 268
>sp|Q9TR36|PIPNB_BOVIN Phosphatidylinositol transfer protein beta isoform OS=Bos taurus
GN=PITPNB PE=1 SV=3
Length = 271
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 65/79 (82%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFI K E+R+FTNFHRQ+FCWID+W DLTMEDIRR+E+E
Sbjct: 190 MCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDE 249
Query: 61 TKKELDRQRLEGEVRGMKA 79
T+KEL+ R +G VRG A
Sbjct: 250 TQKELETMRKKGSVRGTSA 268
>sp|P48739|PIPNB_HUMAN Phosphatidylinositol transfer protein beta isoform OS=Homo sapiens
GN=PITPNB PE=1 SV=2
Length = 271
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 64/79 (81%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFI K E+R+FTNFHRQ+FCWID+W DLTMEDIRR+E+E
Sbjct: 190 MCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDE 249
Query: 61 TKKELDRQRLEGEVRGMKA 79
T+KEL+ R G VRG A
Sbjct: 250 TQKELETMRKRGSVRGTSA 268
>sp|P53812|PIPNB_RAT Phosphatidylinositol transfer protein beta isoform OS=Rattus
norvegicus GN=Pitpnb PE=1 SV=2
Length = 271
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 64/79 (81%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFI K E+R+FTN HRQ+FCWID+W DLTMEDIRR+E+E
Sbjct: 190 MCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNLHRQLFCWIDKWIDLTMEDIRRMEDE 249
Query: 61 TKKELDRQRLEGEVRGMKA 79
T+KEL+ R +G VRG A
Sbjct: 250 TQKELETMRKKGSVRGTSA 268
>sp|P53811|PIPNB_MOUSE Phosphatidylinositol transfer protein beta isoform OS=Mus musculus
GN=Pitpnb PE=1 SV=2
Length = 271
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 64/79 (81%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFI K E+R+FTN HRQ+FCWID+W DLTMEDIRR+E+E
Sbjct: 190 MCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNLHRQLFCWIDKWIDLTMEDIRRMEDE 249
Query: 61 TKKELDRQRLEGEVRGMKA 79
T+KEL+ R +G VRG A
Sbjct: 250 TQKELETMRKKGSVRGTSA 268
>sp|Q9NCL8|PITP1_DICDI Phosphatidylinositol transfer protein 1 OS=Dictyostelium discoideum
GN=pitA PE=1 SV=1
Length = 264
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 53/68 (77%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
MTCYKLVT EFK+FGFQ +VENF+ E LFT FHRQV+CW+D W ++M+D+R E +
Sbjct: 185 MTCYKLVTVEFKYFGFQTKVENFMMGIEFDLFTKFHRQVYCWLDEWFGMSMDDVRAFELK 244
Query: 61 TKKELDRQ 68
TK++L ++
Sbjct: 245 TKEDLKKK 252
>sp|Q9NCL7|PITP2_DICDI Phosphatidylinositol transfer protein 2 OS=Dictyostelium discoideum
GN=pitB PE=2 SV=1
Length = 259
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAE-RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
MTCYKLV AEFK++GFQ +VEN I R + HR +FCWID W LT+EDIR+IEE
Sbjct: 182 MTCYKLVHAEFKYWGFQTKVENVIQDTGVRDVLLKAHRALFCWIDEWFGLTIEDIRKIEE 241
Query: 60 ETKKELDRQRLEGE 73
ETK EL ++ E +
Sbjct: 242 ETKAELAKKLEENK 255
>sp|Q9UKF7|PITC1_HUMAN Cytoplasmic phosphatidylinositol transfer protein 1 OS=Homo sapiens
GN=PITPNC1 PE=1 SV=2
Length = 332
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +F+ +G Q RVE F+HK R + HRQ F W+D W+D+TM+D+R E
Sbjct: 181 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREFERA 240
Query: 61 TKKELDRQ 68
T++ +++
Sbjct: 241 TQEATNKK 248
>sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo
sapiens GN=PITPNM1 PE=1 SV=4
Length = 1244
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAE-RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
M YKL EF+++G Q ++E FIH RR+ HRQ +CW D W +L+M DIR +EE
Sbjct: 187 MCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTELSMADIRALEE 246
Query: 60 ETKKELDRQRL 70
ET + L QR+
Sbjct: 247 ETARML-AQRM 256
>sp|Q6ZPQ6|PITM2_MOUSE Membrane-associated phosphatidylinositol transfer protein 2 OS=Mus
musculus GN=Pitpnm2 PE=1 SV=2
Length = 1335
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAE-RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
M YKL EF+++G Q ++E FIH RR+ HRQ +CW D W+ LTME IR +E
Sbjct: 188 MCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLTMEKIRELER 247
Query: 60 ETKKELDRQ 68
E + L R+
Sbjct: 248 EVQLMLSRK 256
>sp|Q5U2N3|PITM1_RAT Membrane-associated phosphatidylinositol transfer protein 1
OS=Rattus norvegicus GN=Pitpnm1 PE=2 SV=1
Length = 1242
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAE-RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
M YKL EF+++G Q ++E FIH RR+ HRQ +CW D W +L+M DIR +EE
Sbjct: 187 MCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWIELSMADIRALEE 246
Query: 60 ETKKELDRQRL 70
ET + L QR+
Sbjct: 247 ETARML-AQRM 256
>sp|O35954|PITM1_MOUSE Membrane-associated phosphatidylinositol transfer protein 1 OS=Mus
musculus GN=Pitpnm1 PE=1 SV=1
Length = 1243
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAE-RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
M YKL EF+++G Q ++E FIH RR+ HRQ +CW D W +L+M DIR +EE
Sbjct: 187 MCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWIELSMADIRALEE 246
Query: 60 ETKKELDRQRL 70
ET + L QR+
Sbjct: 247 ETARML-AQRM 256
>sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol transfer protein 2 OS=Homo
sapiens GN=PITPNM2 PE=1 SV=1
Length = 1349
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAE-RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
M YKL EF+++G Q ++E FIH RR+ HRQ +CW D W+ L+ME+IR +E+
Sbjct: 188 MCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLSMENIRELEK 247
Query: 60 ETKKELDRQ 68
E + L R+
Sbjct: 248 EAQLMLSRK 256
>sp|Q28CA0|PITC1_XENTR Cytoplasmic phosphatidylinositol transfer protein 1 OS=Xenopus
tropicalis GN=pitpnc1 PE=2 SV=1
Length = 329
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLV +F+ +G Q RVE F+HK R + HRQ F W+D W+D+TM+++R E
Sbjct: 181 MCSYKLVAVKFEVWGLQSRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREYERT 240
Query: 61 TKKELDRQ 68
T++ +R+
Sbjct: 241 TQEATNRK 248
>sp|Q8K4R4|PITC1_MOUSE Cytoplasmic phosphatidylinositol transfer protein 1 OS=Mus musculus
GN=Pitpnc1 PE=1 SV=1
Length = 332
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +F+ +G Q RVE F+HK R + HRQ F W+D W+D+TM+++R E
Sbjct: 181 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA 240
Query: 61 TKKELDRQ 68
T++ +++
Sbjct: 241 TQEATNKK 248
>sp|Q54VC7|PITP3_DICDI Phosphatidylinositol transfer protein 3 OS=Dictyostelium discoideum
GN=pitC PE=3 SV=1
Length = 287
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHK-AERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
M CYK+ EF+ +G Q +VENFI + A R F HRQ+FCWID+W D+ ME +R E+
Sbjct: 183 MCCYKVCKVEFRCWGVQNKVENFIQRVALRDTFFMGHRQIFCWIDQWFDMDMESLREFEK 242
Query: 60 ETKKELDRQ 68
+T +E+ Q
Sbjct: 243 KTNEEMKAQ 251
>sp|P43125|RDGB_DROME Protein retinal degeneration B OS=Drosophila melanogaster GN=rdgB
PE=1 SV=2
Length = 1259
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHK-AERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
MT YK+ EF+++G Q ++E FIH A R++ HRQ + W D W LT+EDIR +E
Sbjct: 198 MTAYKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELER 257
Query: 60 ETKKELDRQRLEGE 73
+T+ L ++ GE
Sbjct: 258 QTQLALAKKMGGGE 271
>sp|Q54D93|PITP4_DICDI Phosphatidylinositol transfer protein 4 OS=Dictyostelium discoideum
GN=pitD PE=3 SV=2
Length = 331
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIH-KAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEE 59
M YKLVT F ++GFQ RVEN + R +F HR +FCW+D W DL+ E I + E+
Sbjct: 185 MVVYKLVTVNFNYWGFQNRVENLVQTNGLREVFLKAHRSLFCWMDEWIDLSEEQIEQFEQ 244
Query: 60 ETKKELDRQRLEGEV 74
T + + +E ++
Sbjct: 245 STYQLMMNNTIENKL 259
>sp|Q9U9P7|PITC1_DROME Cytoplasmic phosphatidylinositol transfer protein 1 OS=Drosophila
melanogaster GN=rdgBbeta PE=2 SV=1
Length = 273
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YK+V A F+ +G Q +VE+FI + R + HRQ F W+D WH +T+ED+R E +
Sbjct: 183 MCSYKVVHASFEVWGLQTKVEDFIQRGIREILLLGHRQAFAWVDEWHGMTLEDVRAYERQ 242
Query: 61 TKKELDRQ 68
+ E + +
Sbjct: 243 KQAETNEK 250
>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila melanogaster GN=para
PE=2 SV=3
Length = 2131
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 24 IHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRI--EEETKKELDRQRLEGEV 74
I + ER LF F R+ I++ RI E E +KEL+R+R EGEV
Sbjct: 8 ISEEERSLFRPFTRESLVQIEQ----------RIAAEHEKQKELERKRAEGEV 50
>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1
SV=3
Length = 1274
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 25 HKAERRLFTNFHRQVFCWIDRWHDLTMEDI-RRIEEETKKELDRQRLEGEV 74
H++ R+ H++ W+D+W T E + R + ET K L + LEG V
Sbjct: 1197 HQSHERVSKRLHQRFQAWVDKW---TKEHVPREMAAETSKWLMGEGLEGLV 1244
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1
SV=2
Length = 1273
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 25 HKAERRLFTNFHRQVFCWIDRWHDLTMEDI-RRIEEETKKELDRQRLEGEV 74
H++ R+ H++ W+D+W T E + R + ET K L + LEG V
Sbjct: 1196 HQSHERVSKRLHQRFQAWVDKW---TKEHVPREMAAETSKWLMGEGLEGLV 1243
>sp|Q2S2A3|SYM_SALRD Methionine--tRNA ligase OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=metG PE=3 SV=1
Length = 713
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 9 AEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDR 67
A+F W GFQ RV + +F NF + + R+ D T+ + E + LDR
Sbjct: 387 ADFSWEGFQQRVNGELAN----VFGNFVHRTLTFAQRYFDGTVPPLEDPSEADRVMLDR 441
>sp|Q01664|TFAP4_HUMAN Transcription factor AP-4 OS=Homo sapiens GN=TFAP4 PE=1 SV=2
Length = 338
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 44 DRWHDLTMEDIRRIEEETKKELDRQR-----LEGEVRGMKA 79
D W D ED+RR E +++LD++R LE +VR ++A
Sbjct: 141 DIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEA 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,122,303
Number of Sequences: 539616
Number of extensions: 1003784
Number of successful extensions: 4808
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4770
Number of HSP's gapped (non-prelim): 36
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)