Query psy11575
Match_columns 80
No_of_seqs 104 out of 224
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:01:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 100.0 6.3E-41 2.2E-45 250.3 6.0 80 1-80 190-269 (270)
2 3hym_A Anaphase-promoting comp 64.4 3.1 0.00011 21.3 1.3 16 47-62 9-24 (29)
3 1b0n_B Protein (SINI protein); 60.9 4.2 0.00014 23.5 1.6 12 47-58 25-36 (57)
4 2ki0_A DS119; beta-alpha-beta, 41.0 32 0.0011 18.0 2.9 19 46-64 9-27 (36)
5 2l2l_B Methyl-CPG-binding doma 39.8 38 0.0013 17.9 3.2 17 48-64 6-22 (36)
6 3lf9_A 4E10_D0_1IS1A_001_C (T1 37.9 39 0.0013 22.2 3.7 40 32-71 56-98 (121)
7 1ge9_A Ribosome recycling fact 36.0 1E+02 0.0036 21.1 6.3 42 30-71 128-169 (184)
8 1ise_A Ribosome recycling fact 30.6 56 0.0019 22.5 3.8 42 30-71 126-170 (185)
9 1dd5_A Ribosome recycling fact 30.5 57 0.0019 22.5 3.8 42 30-71 126-170 (185)
10 1is1_A Ribosome recycling fact 30.5 57 0.0019 22.5 3.8 42 30-71 126-170 (185)
11 4gfq_A Ribosome-recycling fact 30.4 56 0.0019 23.1 3.8 39 32-70 152-193 (209)
12 1wqg_A Ribosome recycling fact 30.2 58 0.002 22.4 3.8 42 30-71 126-170 (185)
13 1eh1_A Ribosome recycling fact 30.0 59 0.002 22.4 3.8 41 31-71 128-171 (185)
14 1gt0_D Transcription factor SO 29.8 72 0.0024 17.9 3.6 25 44-68 39-63 (80)
15 3lhp_S 4E10_D0_1ISEA_004_N (T9 29.3 49 0.0017 21.8 3.1 40 32-71 66-108 (123)
16 3eb7_A Insecticidal delta-endo 29.3 1E+02 0.0034 24.1 5.4 38 29-67 140-177 (589)
17 2k48_A Nucleoprotein; viral pr 28.5 20 0.00068 23.3 1.0 17 48-64 31-47 (107)
18 2cto_A Novel protein; high mob 28.2 55 0.0019 19.9 3.1 28 44-71 48-75 (93)
19 2ic6_A Nucleocapsid protein; h 28.2 27 0.00091 21.4 1.5 17 48-64 1-17 (78)
20 1v4p_A Alanyl-tRNA synthetase; 28.1 58 0.002 20.6 3.3 20 48-67 49-68 (157)
21 1q08_A Zn(II)-responsive regul 27.4 28 0.00097 20.3 1.6 12 47-58 15-26 (99)
22 1wz6_A HMG-box transcription f 27.2 57 0.002 18.5 2.9 25 44-68 44-68 (82)
23 1hry_A Human SRY; DNA, DNA-bin 26.8 77 0.0026 17.5 3.4 25 44-68 41-65 (76)
24 2yuk_A Myeloid/lymphoid or mix 26.6 66 0.0022 19.6 3.2 30 44-73 57-86 (90)
25 2rp5_A Putative uncharacterize 26.4 27 0.00094 23.3 1.4 23 11-38 105-128 (136)
26 2eqz_A High mobility group pro 26.2 76 0.0026 18.2 3.3 24 44-67 54-77 (86)
27 2h88_D Succinate dehydrogenase 25.7 20 0.00068 22.4 0.7 15 13-27 48-62 (103)
28 1j46_A SRY, sex-determining re 25.4 93 0.0032 17.8 3.6 26 44-69 41-66 (85)
29 3fgh_A Transcription factor A, 25.1 69 0.0024 17.4 2.9 24 44-67 35-58 (67)
30 2lef_A LEF-1 HMG, protein (lym 23.8 1E+02 0.0036 17.5 3.6 26 44-69 39-64 (86)
31 4fhn_B Nucleoporin NUP120; pro 23.8 49 0.0017 27.6 2.8 33 10-42 992-1029(1139)
32 1aab_A High mobility group pro 23.5 82 0.0028 17.8 3.1 25 44-68 46-70 (83)
33 3jui_A Translation initiation 23.2 81 0.0028 21.1 3.4 22 51-72 8-29 (182)
34 2qkg_A Insecticidal delta-endo 23.0 1.5E+02 0.0051 23.6 5.4 38 29-67 140-177 (589)
35 3e1r_A Centrosomal protein of 22.7 58 0.002 18.9 2.2 21 48-68 2-22 (58)
36 2e6o_A HMG box-containing prot 21.6 82 0.0028 18.1 2.9 25 44-68 54-78 (87)
37 1v63_A Nucleolar transcription 21.6 1.2E+02 0.004 18.2 3.6 22 44-65 43-64 (101)
38 1ckt_A High mobility group 1 p 20.9 48 0.0016 18.1 1.6 24 44-67 40-63 (71)
39 2xrh_A Protein HP0721; unknown 20.2 1.8E+02 0.006 18.5 6.2 38 28-68 50-87 (100)
40 2co9_A Thymus high mobility gr 20.1 1.3E+02 0.0046 17.8 3.7 23 44-66 54-76 (102)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=100.00 E-value=6.3e-41 Score=250.27 Aligned_cols=80 Identities=68% Similarity=1.253 Sum_probs=66.7
Q ss_pred CeeeeEeEEEeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q psy11575 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDRQRLEGEVRGMKAD 80 (80)
Q Consensus 1 M~~YKlv~v~f~~~Glq~~vE~~i~~~~r~i~~~~HRq~fcwiDeW~~lTmedIR~~E~et~~~l~~~~~~~~~~~~~~~ 80 (80)
|||||||+|+|+|||||++||+|||+++|++|+++|||||||+||||||||||||++|++||++|++++..++++|+.++
T Consensus 190 Mc~YKLv~v~f~~wGlq~rvE~fI~~~~r~i~~~~HRq~fcW~DeW~glTmedIR~~E~etq~~L~~~~~~~~~~~~~~~ 269 (270)
T 1kcm_A 190 MCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGMTAD 269 (270)
T ss_dssp EEEEEEEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHCCCC-------------
T ss_pred EEEEEEEEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHhccHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccCCccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=64.38 E-value=3.1 Score=21.33 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.2
Q ss_pred cCCCHHHHHHHHHHHH
Q psy11575 47 HDLTMEDIRRIEEETK 62 (80)
Q Consensus 47 ~~lTmedIR~~E~et~ 62 (80)
+.+|+|||-++|+.-+
T Consensus 9 I~l~~eDi~e~E~~rk 24 (29)
T 3hym_A 9 LELKLDDIEEFENIRK 24 (29)
T ss_dssp CCCCSGGGHHHHHHHH
T ss_pred EEecHHHHHHHHHHHH
Confidence 4689999999998744
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=60.88 E-value=4.2 Score=23.49 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=10.6
Q ss_pred cCCCHHHHHHHH
Q psy11575 47 HDLTMEDIRRIE 58 (80)
Q Consensus 47 ~~lTmedIR~~E 58 (80)
.|||++|||++=
T Consensus 25 lGlsleEIrefL 36 (57)
T 1b0n_B 25 ANISPEEIRKYL 36 (57)
T ss_dssp TTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 799999999874
No 4
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=40.99 E-value=32 Score=17.97 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=15.7
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q psy11575 46 WHDLTMEDIRRIEEETKKE 64 (80)
Q Consensus 46 W~~lTmedIR~~E~et~~~ 64 (80)
|.|=|-|++.++.+|.++.
T Consensus 9 wvggtpeelkklkeeakka 27 (36)
T 2ki0_A 9 WVGGTPEELKKLKEEAKKA 27 (36)
T ss_dssp CBCCCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHhc
Confidence 8999999999988876543
No 5
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=39.85 E-value=38 Score=17.92 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy11575 48 DLTMEDIRRIEEETKKE 64 (80)
Q Consensus 48 ~lTmedIR~~E~et~~~ 64 (80)
-.|-+|||+=|+.++..
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 35899999999988765
No 6
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=37.94 E-value=39 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 32 FTNFHRQVFCWIDRW---HDLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 32 ~~~~HRq~fcwiDeW---~~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
..+.-|.+---+..- -++|-||++..|.++|...++.++.
T Consensus 56 IRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkk 98 (121)
T 3lf9_A 56 VRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKK 98 (121)
T ss_dssp HHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555555554 3599999999999999988776643
No 7
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=36.00 E-value=1e+02 Score=21.10 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 30 RLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 30 ~i~~~~HRq~fcwiDeW~~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
--..+.-|.+---+...-++|-||.+..|.+.|+..++..+.
T Consensus 128 vaiRniRrda~~~lKk~~kiseD~~k~~e~~iQkltd~~i~~ 169 (184)
T 1ge9_A 128 VRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDE 169 (184)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666665699999999999999887766543
No 8
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=30.56 E-value=56 Score=22.50 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 30 RLFTNFHRQVFCWIDRWH---DLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 30 ~i~~~~HRq~fcwiDeW~---~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
--..+.-|.+---+...- ++|-||++..|.+.|+..++..+.
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 170 (185)
T 1ise_A 126 VAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKK 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666652 699999999999999887776543
No 9
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=30.53 E-value=57 Score=22.50 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 30 RLFTNFHRQVFCWIDRWH---DLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 30 ~i~~~~HRq~fcwiDeW~---~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
--..+.-|.+---+...- ++|-||++..|.+.|+..++..+.
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 170 (185)
T 1dd5_A 126 IAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEK 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666652 699999999999999887776543
No 10
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=30.48 E-value=57 Score=22.46 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 30 RLFTNFHRQVFCWIDRWH---DLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 30 ~i~~~~HRq~fcwiDeW~---~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
--..+.-|.+---+...- ++|-||++..|.+.|+..++..+.
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 170 (185)
T 1is1_A 126 VAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKK 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666652 689999999999999887776543
No 11
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=30.36 E-value=56 Score=23.11 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHHh
Q psy11575 32 FTNFHRQVFCWIDRW---HDLTMEDIRRIEEETKKELDRQRL 70 (80)
Q Consensus 32 ~~~~HRq~fcwiDeW---~~lTmedIR~~E~et~~~l~~~~~ 70 (80)
..+.-|.+---+... -++|.||++..|.+.|+..++..+
T Consensus 152 IRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~ 193 (209)
T 4gfq_A 152 VRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIA 193 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555 369999999999999988776654
No 12
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=30.19 E-value=58 Score=22.42 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 30 RLFTNFHRQVFCWIDRWH---DLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 30 ~i~~~~HRq~fcwiDeW~---~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
--..+.-|.+---+...- ++|-||.+..|.+.|+..++..+.
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 170 (185)
T 1wqg_A 126 VSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQ 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666652 699999999999999887776543
No 13
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=30.04 E-value=59 Score=22.41 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 31 LFTNFHRQVFCWIDRWH---DLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 31 i~~~~HRq~fcwiDeW~---~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
-..+.-|.+---+...- ++|-||++..|.+.|+..++..+.
T Consensus 128 aiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 171 (185)
T 1eh1_A 128 AIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666653 699999999999999988776543
No 14
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=29.85 E-value=72 Score=17.91 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=20.1
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQ 68 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~ 68 (80)
..|-.||.++=..++++..+...+-
T Consensus 39 ~~Wk~ls~eeK~~y~~~A~~~k~~y 63 (80)
T 1gt0_D 39 AEWKLLSETEKRPFIDEAKRLRALH 63 (80)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999877665443
No 15
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=29.31 E-value=49 Score=21.77 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 32 FTNFHRQVFCWIDRW---HDLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 32 ~~~~HRq~fcwiDeW---~~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
..+.-|.+---+..- -++|-||.+..|.++|...++.++.
T Consensus 66 IRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkk 108 (123)
T 3lhp_S 66 VRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKK 108 (123)
T ss_dssp HHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554 3599999999999999988776543
No 16
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=29.29 E-value=1e+02 Score=24.10 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Q psy11575 29 RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDR 67 (80)
Q Consensus 29 r~i~~~~HRq~fcwiDeW~~lTmedIR~~E~et~~~l~~ 67 (80)
-.+.|...|.+.-.-++| |++-.+|..+..+.++..++
T Consensus 140 AnlhL~LLrD~i~~g~~W-g~~~~~i~~~~~~~~~~i~~ 177 (589)
T 3eb7_A 140 ANLHLLLLKDASIFGEEW-GFSTTAINNYYNRQMSLIAQ 177 (589)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999 89999999888887776544
No 17
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.47 E-value=20 Score=23.26 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy11575 48 DLTMEDIRRIEEETKKE 64 (80)
Q Consensus 48 ~lTmedIR~~E~et~~~ 64 (80)
.+||+||.++|+|...-
T Consensus 31 ~~tM~~ieeLQ~Ei~~~ 47 (107)
T 2k48_A 31 PFTMSTLQELQENITAH 47 (107)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 37899999999987643
No 18
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.23 E-value=55 Score=19.88 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=21.6
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQRLE 71 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~~~~ 71 (80)
.+|..||.+|=..||++..+.-++.-++
T Consensus 48 e~Wk~ls~eEK~pYe~~A~~~K~~y~kd 75 (93)
T 2cto_A 48 SDWALLREEEKEKYAEMAREWRAAQGKD 75 (93)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5799999999999999877655544444
No 19
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.16 E-value=27 Score=21.42 Aligned_cols=17 Identities=6% Similarity=0.282 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy11575 48 DLTMEDIRRIEEETKKE 64 (80)
Q Consensus 48 ~lTmedIR~~E~et~~~ 64 (80)
|-||+||.+++++...-
T Consensus 1 ~~~M~~l~eLq~e~~~~ 17 (78)
T 2ic6_A 1 GSHMSTLKEVQDNITLH 17 (78)
T ss_dssp ----CHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 56899999999887643
No 20
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=28.09 E-value=58 Score=20.59 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy11575 48 DLTMEDIRRIEEETKKELDR 67 (80)
Q Consensus 48 ~lTmedIR~~E~et~~~l~~ 67 (80)
.+|-+|+.++|+++++..++
T Consensus 49 ~~t~e~l~~IE~~~n~~I~~ 68 (157)
T 1v4p_A 49 KPSDEEIREIERLANEKVKE 68 (157)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHc
Confidence 48999999999998877644
No 21
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.36 E-value=28 Score=20.31 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=10.3
Q ss_pred cCCCHHHHHHHH
Q psy11575 47 HDLTMEDIRRIE 58 (80)
Q Consensus 47 ~~lTmedIR~~E 58 (80)
.|||.++|+++=
T Consensus 15 lGfsL~eIk~~l 26 (99)
T 1q08_A 15 LGFSLESIRELL 26 (99)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 699999999863
No 22
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=27.21 E-value=57 Score=18.49 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=19.8
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQ 68 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~ 68 (80)
..|-.||.++=..++++..+...+-
T Consensus 44 ~~Wk~ls~~eK~~y~~~A~~~k~~y 68 (82)
T 1wz6_A 44 DWWAVLDPKEKQKYTDMAKEYKDAF 68 (82)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999998877665443
No 23
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=26.83 E-value=77 Score=17.53 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.6
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQ 68 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~ 68 (80)
..|-.||.++=..++++..+...+.
T Consensus 41 ~~Wk~ls~~eK~~y~~~A~~~k~~y 65 (76)
T 1hry_A 41 YQWKMLTEAEKWPFFQEAQKLQAMH 65 (76)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999988877665443
No 24
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=26.59 E-value=66 Score=19.57 Aligned_cols=30 Identities=7% Similarity=0.210 Sum_probs=24.4
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQRLEGE 73 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~~~~~~ 73 (80)
..|-.||-+|=..||++..+...+.+....
T Consensus 57 e~Wk~ls~eeK~pY~~kA~~~K~~h~~~~~ 86 (90)
T 2yuk_A 57 KLWRKASSQERAPYVQKARDNRAALRINKV 86 (90)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhhHh
Confidence 889999999999999997777666665443
No 25
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=26.38 E-value=27 Score=23.30 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=16.3
Q ss_pred eeccch-hHHHHHHHHHHHHHHHHHHHHH
Q psy11575 11 FKWFGF-QGRVENFIHKAERRLFTNFHRQ 38 (80)
Q Consensus 11 f~~~Gl-q~~vE~~i~~~~r~i~~~~HRq 38 (80)
|.+-|+ .++.|++ .++|+++||-
T Consensus 105 FE~IGiDssKleKY-----Yd~FL~yyRi 128 (136)
T 2rp5_A 105 FERIGIDSSKLSKY-----YEAFLSFYRI 128 (136)
T ss_dssp HHHHTCCGGGHHHH-----HHHHHHHHHH
T ss_pred HHHhcccHHHHHHH-----HHHHHHHHHH
Confidence 455666 5666653 6999999983
No 26
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.20 E-value=76 Score=18.19 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=19.6
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDR 67 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~ 67 (80)
..|-.||.++=..|+++..+...+
T Consensus 54 ~~Wk~ls~~eK~~y~~~A~~~k~~ 77 (86)
T 2eqz_A 54 ERWKTMSGKEKSKFDEMAKADKVR 77 (86)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH
Confidence 569999999999999887766544
No 27
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=25.73 E-value=20 Score=22.44 Aligned_cols=15 Identities=13% Similarity=0.565 Sum_probs=13.0
Q ss_pred ccchhHHHHHHHHHH
Q psy11575 13 WFGFQGRVENFIHKA 27 (80)
Q Consensus 13 ~~Glq~~vE~~i~~~ 27 (80)
.+|+|.-+|++|++-
T Consensus 48 ~~G~q~vI~DYv~~~ 62 (103)
T 2h88_D 48 HWGLGQVITDYVHGD 62 (103)
T ss_dssp HHHHHHHHHHHCCSH
T ss_pred HHhcCeeeecccccc
Confidence 489999999999853
No 28
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=25.44 E-value=93 Score=17.76 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=20.2
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQR 69 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~~ 69 (80)
..|-.||.++=..++++..+...+..
T Consensus 41 ~~Wk~ls~eeK~~y~~~A~~~k~~y~ 66 (85)
T 1j46_A 41 YQWKMLTEAEKWPFFQEAQKLQAMHR 66 (85)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999888776654443
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=25.07 E-value=69 Score=17.38 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=19.2
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDR 67 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~ 67 (80)
..|-.||-++=..+++..++...+
T Consensus 35 ~~Wk~ls~~eK~~y~~~A~~~k~~ 58 (67)
T 3fgh_A 35 ENWKNLSDSEKELYIQHAKEDETR 58 (67)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHH
Confidence 569999999999999887665543
No 30
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.79 E-value=1e+02 Score=17.52 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=20.6
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQR 69 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~~ 69 (80)
..|-.||.++=..++++..+...+-.
T Consensus 39 ~~Wk~ls~eeK~~y~~~A~~~k~~y~ 64 (86)
T 2lef_A 39 RRWHALSREEQAKYYELARKERQLHM 64 (86)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999988777655443
No 31
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.78 E-value=49 Score=27.62 Aligned_cols=33 Identities=12% Similarity=0.425 Sum_probs=26.8
Q ss_pred EeeccchhHHHHHHHHHHHHHH--HH---HHHHHHHHH
Q psy11575 10 EFKWFGFQGRVENFIHKAERRL--FT---NFHRQVFCW 42 (80)
Q Consensus 10 ~f~~~Glq~~vE~~i~~~~r~i--~~---~~HRq~fcw 42 (80)
+|+|-|++..||+.+....|.. .. ++|+-+++|
T Consensus 992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ 1029 (1139)
T 4fhn_B 992 NYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSW 1029 (1139)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhh
Confidence 6899999999999998766644 22 689999999
No 32
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=23.50 E-value=82 Score=17.82 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=20.0
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQ 68 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~ 68 (80)
..|-.||.++=..|+++.++...+-
T Consensus 46 ~~Wk~ls~~eK~~y~~~A~~~k~~y 70 (83)
T 1aab_A 46 ERWKTMSAKEKGKFEDMAKADKARY 70 (83)
T ss_dssp HHHTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4599999999999998877765543
No 33
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=23.24 E-value=81 Score=21.07 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy11575 51 MEDIRRIEEETKKELDRQRLEG 72 (80)
Q Consensus 51 medIR~~E~et~~~l~~~~~~~ 72 (80)
|+||+.+..|...-|.+.+..+
T Consensus 8 ~~~~~~F~~Ev~~sl~ra~~e~ 29 (182)
T 3jui_A 8 MDDIKVFQNEVLGTLQRGKEEN 29 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999988877654
No 34
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=22.99 E-value=1.5e+02 Score=23.61 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Q psy11575 29 RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDR 67 (80)
Q Consensus 29 r~i~~~~HRq~fcwiDeW~~lTmedIR~~E~et~~~l~~ 67 (80)
-.+.|.+.|.+.-.-++| |++-.+|..+..+.++..++
T Consensus 140 AnLHL~LLRD~i~~G~~W-G~s~~~i~~y~~~l~~~i~~ 177 (589)
T 2qkg_A 140 ANLHLLLLKDASIFGEEW-GFSTTAINNYYNRQMSLIAQ 177 (589)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHHHH
Confidence 367788899999999999 99999999888877666543
No 35
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=22.67 E-value=58 Score=18.89 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy11575 48 DLTMEDIRRIEEETKKELDRQ 68 (80)
Q Consensus 48 ~lTmedIR~~E~et~~~l~~~ 68 (80)
+-++.||.++|...++.|++.
T Consensus 2 n~~~~~i~~ve~qLkDalekn 22 (58)
T 3e1r_A 2 NSSINNIHEMEIQLKDALEKN 22 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhc
Confidence 347889999999999888653
No 36
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=21.64 E-value=82 Score=18.13 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.5
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDRQ 68 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~~ 68 (80)
..|-.||.++=..++++..+...+.
T Consensus 54 ~~Wk~ls~eeK~~y~~~A~~~k~~~ 78 (87)
T 2e6o_A 54 DRWKKMKNEERRMYTLEAKALAEEQ 78 (87)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999998876655443
No 37
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.58 E-value=1.2e+02 Score=18.25 Aligned_cols=22 Identities=9% Similarity=0.389 Sum_probs=18.0
Q ss_pred hcccCCCHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKEL 65 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l 65 (80)
..|..||.++=..|+++..+..
T Consensus 43 e~Wk~ls~~eK~~Y~~~A~~~k 64 (101)
T 1v63_A 43 SRWQRISQSQKEHYKKLAEEQQ 64 (101)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 5699999999999988766543
No 38
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=20.95 E-value=48 Score=18.14 Aligned_cols=24 Identities=21% Similarity=0.598 Sum_probs=19.0
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELDR 67 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~~ 67 (80)
..|-+||.++=..++++.++...+
T Consensus 40 ~~Wk~ls~~eK~~y~~~A~~~k~~ 63 (71)
T 1ckt_A 40 ERWKTMSAKEKGKFEDMAKADKAR 63 (71)
T ss_dssp HHHHTCCTTTSHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHH
Confidence 469999999998898887766544
No 39
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=20.16 E-value=1.8e+02 Score=18.47 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHH
Q psy11575 28 ERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDRQ 68 (80)
Q Consensus 28 ~r~i~~~~HRq~fcwiDeW~~lTmedIR~~E~et~~~l~~~ 68 (80)
.+..--++++++-.=+| .||++|-+++-.+++++|.+.
T Consensus 50 ~k~F~~~~~~~~~kN~~---kMS~ke~~~~r~aI~eal~k~ 87 (100)
T 2xrh_A 50 RKAFHKQLHEYATKNTD---KMTVADFEARQKAVKEALKKG 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHh
Confidence 34444455555555554 499999999999999998764
No 40
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.11 E-value=1.3e+02 Score=17.80 Aligned_cols=23 Identities=17% Similarity=0.305 Sum_probs=18.6
Q ss_pred hcccCCCHHHHHHHHHHHHHHHH
Q psy11575 44 DRWHDLTMEDIRRIEEETKKELD 66 (80)
Q Consensus 44 DeW~~lTmedIR~~E~et~~~l~ 66 (80)
..|-.||.++=..|+++..+...
T Consensus 54 ~~Wk~ls~eeK~~Y~~~A~~~k~ 76 (102)
T 2co9_A 54 SMWDGLGEEQKQVYKKKTEAAKK 76 (102)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHH
Confidence 46999999999999888776543
Done!