RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11575
(80 letters)
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha;
phospholipid binding protein, phospholipid transport,
binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4
PDB: 1t27_A* 1uw5_A* 2a1l_A*
Length = 270
Score = 130 bits (327), Expect = 2e-39
Identities = 54/80 (67%), Positives = 67/80 (83%)
Query: 1 MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
M YKLVT +FKW+G Q +VENFIHK E+RLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 190 MCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 249
Query: 61 TKKELDRQRLEGEVRGMKAD 80
TK++LD R + V+GM AD
Sbjct: 250 TKRQLDEMRQKDPVKGMTAD 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.36
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 14 FGFQGRVENFIHKAE-RRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKK 63
FG QG +++ E R L+ +H V I T+ ++ R + +K
Sbjct: 160 FGGQGNTDDYF--EELRDLYQTYHVLVGDLIKF-SAETLSELIRTTLDAEK 207
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 27.3 bits (60), Expect = 0.49
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 42 WIDR-WHDLTMEDIRRIEE 59
W D W T + +RR+EE
Sbjct: 938 WFDVTWRTFTGDFLRRVEE 956
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 25.4 bits (55), Expect = 2.3
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 42 WIDR-WHDLTMEDIRRIEE 59
WID LT + IRR+EE
Sbjct: 932 WIDPSLKKLTGDFIRRVEE 950
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.7
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 29 RRLFTNFH---------RQVFCWIDRWHDLTMEDIRRIEEETKKE--LDRQRLEGEVR 75
R++F + I W D+ D+ + + K +++Q E +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Score = 23.7 bits (50), Expect = 8.7
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 20 VENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDR 67
+ +F+ K E N + D M + I EE K++ R
Sbjct: 548 ILDFLPKIE----ENLICSKYT--DLLRIALMAEDEAIFEEAHKQVQR 589
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 24.8 bits (53), Expect = 4.3
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 52 EDIRRIEEETKKELDRQRLEGEVR 75
+ +R+E+E + L+RQ++ +
Sbjct: 675 HEAQRLEQEARGRLERQKILDQSE 698
>3ats_A Putative uncharacterized protein; hypothetical protein, putative
aminoglycoside phosphortransf transferase; 1.67A
{Mycobacterium tuberculosis} PDB: 3att_A*
Length = 357
Score = 24.3 bits (53), Expect = 4.7
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 35 FHRQVFCWIDRWHDLTMEDIRRIEE 59
+ F W+ W+D +E I R
Sbjct: 177 TLHRHFNWVRSWYDFAVEGIGRSPL 201
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 24.5 bits (53), Expect = 5.3
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 13 WFGFQGRVENFIHKAERRLFTNFHRQVFC------WIDRWHDLTMEDIRRIEE 59
W G + ++ + + T F Q F + R ++ + + E
Sbjct: 299 WTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQHQFPE 351
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 23.6 bits (52), Expect = 7.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 43 IDRWHDLTMEDIRRIEEETKK 63
+D LT ED+ +E+ +
Sbjct: 106 VDLDRTLTQEDVEALEKRMHE 126
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 91
Score = 23.4 bits (50), Expect = 8.8
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 49 LTMEDIRRIEEETKKELDRQRLEGEVRGMKAD 80
LT E+ R + R+ + E+ +++
Sbjct: 56 LTEEEFSRAPYTIENSSHRRVILTELERVRSG 87
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold,
hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP:
c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A
Length = 484
Score = 23.8 bits (51), Expect = 8.9
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 31 LFTNFHRQV--FCWIDRWHDLTMED 53
LFTN+ R V F RW + D
Sbjct: 202 LFTNYTRYVDEFV---RWGCSQILD 223
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 23.3 bits (50), Expect = 9.9
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 34 NFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDRQRLEGEVRGMKA 79
NF + ++ ++ +D+ RI + ++ V+ M+
Sbjct: 44 NFTAAGYTTLEAVVHMSQDDLARI--GITAITHQNKILSSVQAMRT 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.459
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,321,483
Number of extensions: 67013
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 30
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)