RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11575
         (80 letters)



>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score =  142 bits (361), Expect = 6e-45
 Identities = 54/80 (67%), Positives = 67/80 (83%)

Query: 1   MTCYKLVTAEFKWFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEE 60
           M  YKLVT +FKW+G Q +VENFIHK E+RLFTNFHRQ+FCW+D+W DLTM+DIRR+EEE
Sbjct: 190 MCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEE 249

Query: 61  TKKELDRQRLEGEVRGMKAD 80
           TK++LD  R +  V+GM AD
Sbjct: 250 TKRQLDEMRQKDPVKGMTAD 269


>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 24.9 bits (54), Expect = 0.59
 Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 34 NFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDRQRLEGEVRGMKA 79
          +F    +  +     +  +D+R +         ++++ G ++ M+A
Sbjct: 25 HFAAGGYSSLGMVLRMNAQDVRAL--GITLMGHQKKILGSIQTMRA 68


>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus [TaxId:
           10335]}
          Length = 221

 Score = 23.6 bits (51), Expect = 2.8
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 43  IDRWHDLTMEDIRRIEEETKKELDRQRLE 71
           I+ +  L+ME   R+    K      ++ 
Sbjct: 153 IEPFRVLSMESKARLLSLVKDYAGLNKVW 181


>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein),
          gamma chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 54

 Score = 22.8 bits (49), Expect = 3.5
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 50 TMEDIRRIEEETKKELDRQRL 70
          ++   R++ E+ K E +  R+
Sbjct: 1  SIAQARKLVEQLKMEANIDRI 21


>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 218

 Score = 23.7 bits (50), Expect = 3.6
 Identities = 3/27 (11%), Positives = 10/27 (37%)

Query: 31  LFTNFHRQVFCWIDRWHDLTMEDIRRI 57
           L       +     +   +T++D++  
Sbjct: 156 LIKGSKLSLGEAFKKIDAITVKDVKAW 182


>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
          regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 22.9 bits (49), Expect = 3.8
 Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 48 DLTMEDIR-RIEEETKKELDRQRLEGEVRGMKAD 80
          +  ++D+   +EE        Q+L  + + +K  
Sbjct: 25 EPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 58


>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
           (MPP) beta chain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 217

 Score = 23.2 bits (49), Expect = 4.0
 Identities = 5/45 (11%), Positives = 11/45 (24%)

Query: 13  WFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRI 57
                G          + + T          ++   +T +DI   
Sbjct: 140 LLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMW 184


>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS,
          catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 210

 Score = 22.8 bits (47), Expect = 6.6
 Identities = 6/48 (12%), Positives = 9/48 (18%)

Query: 23 FIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRIEEETKKELDRQRL 70
           I      + TN H                    +   +    D   L
Sbjct: 41 VIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVL 88


>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
           denitrificans [TaxId: 266]}
          Length = 176

 Score = 22.7 bits (49), Expect = 6.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 51  MEDIRRIEEETKKELDRQRLE 71
           +  IR+  EET  + DR++L+
Sbjct: 156 VSQIRQQIEETTSDYDREKLQ 176


>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 204

 Score = 22.5 bits (47), Expect = 7.4
 Identities = 2/45 (4%), Positives = 9/45 (20%)

Query: 13  WFGFQGRVENFIHKAERRLFTNFHRQVFCWIDRWHDLTMEDIRRI 57
               +           + L    +      + +   +   D+   
Sbjct: 134 LMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINA 178


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0468    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 339,502
Number of extensions: 14312
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 27
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.5 bits)