BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11576
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBW|A Chain A, Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphopeptide
And A Small Fragment Hit From A Fbdd Screen
Length = 261
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 33/40 (82%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R+ VE ELK IC DIL+VL KHLIP A TGESKVFYYKMK
Sbjct: 113 RQMVETELKLICXDILDVLDKHLIPAANTGESKVFYYKMK 152
>pdb|2BR9|A Chain A, 14-3-3 Protein Epsilon (Human) Complexed To Peptide
Length = 234
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 33/40 (82%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R+ VE ELK IC DIL+VL KHLIP A TGESKVFYYKMK
Sbjct: 87 RQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMK 126
>pdb|3UAL|A Chain A, Crystal Structure Of 14-3-3 Epsilon With Mlf1 Peptide
Length = 232
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 33/40 (82%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R+ VE ELK IC DIL+VL KHLIP A TGESKVFYYKMK
Sbjct: 86 RQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMK 125
>pdb|2NPM|A Chain A, Crystal Structure Of Cryptosporidium Parvum 14-3-3 Protein
In Complex With Peptide
pdb|2NPM|B Chain B, Crystal Structure Of Cryptosporidium Parvum 14-3-3 Protein
In Complex With Peptide
Length = 260
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R +VE EL DIC+DIL +L KHLIP A + +SKVFY+KMK
Sbjct: 113 RSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMK 152
>pdb|2BQ0|A Chain A, 14-3-3 Protein Beta (Human)
pdb|2BQ0|B Chain B, 14-3-3 Protein Beta (Human)
pdb|2C23|A Chain A, 14-3-3 Protein Beta (Human) In Complex With Exoenzyme S
Peptide
Length = 245
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L +L K+LIP A ESKVFY KMK
Sbjct: 85 REKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMK 124
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L +L K+LIP A
Sbjct: 87 KIEAELQDICNDVLELLDKYLIPNA 111
>pdb|2C1J|A Chain A, Molecular Basis For The Recognition Of Phosphorylated And
Phosphoacetylated Histone H3 By 14-3-3
pdb|2C1J|B Chain B, Molecular Basis For The Recognition Of Phosphorylated And
Phosphoacetylated Histone H3 By 14-3-3
pdb|2C1N|A Chain A, Molecular Basis For The Recognition Of Phosphorylated And
Phosphoacetylated Histone H3 By 14-3-3
pdb|2C1N|B Chain B, Molecular Basis For The Recognition Of Phosphorylated And
Phosphoacetylated Histone H3 By 14-3-3
Length = 258
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L++L K LIP A ESKVFY KMK
Sbjct: 96 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK 135
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L++L K LIP A
Sbjct: 98 KIETELRDICNDVLSLLEKFLIPNA 122
>pdb|4FJ3|A Chain A, 14-3-3 Isoform Zeta In Complex With A Diphoyphorylated
C-Raf Peptide
pdb|4FJ3|B Chain B, 14-3-3 Isoform Zeta In Complex With A Diphoyphorylated
C-Raf Peptide
Length = 235
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L++L K LIP A ESKVFY KMK
Sbjct: 88 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK 127
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L++L K LIP A
Sbjct: 90 KIETELRDICNDVLSLLEKFLIPNA 114
>pdb|2O02|A Chain A, Phosphorylation Independent Interactions Between 14-3-3
And Exoenzyme S: From Structure To Pathogenesis
pdb|2O02|B Chain B, Phosphorylation Independent Interactions Between 14-3-3
And Exoenzyme S: From Structure To Pathogenesis
Length = 230
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L++L K LIP A ESKVFY KMK
Sbjct: 83 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK 122
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L++L K LIP A
Sbjct: 85 KIETELRDICNDVLSLLEKFLIPNA 109
>pdb|2V7D|A Chain A, 14-3-3 Protein Zeta In Complex With Thr758 Phosphorylated
Integrin Beta2 Peptide
pdb|2V7D|B Chain B, 14-3-3 Protein Zeta In Complex With Thr758 Phosphorylated
Integrin Beta2 Peptide
pdb|2V7D|C Chain C, 14-3-3 Protein Zeta In Complex With Thr758 Phosphorylated
Integrin Beta2 Peptide
pdb|2V7D|D Chain D, 14-3-3 Protein Zeta In Complex With Thr758 Phosphorylated
Integrin Beta2 Peptide
Length = 247
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L++L K LIP A ESKVFY KMK
Sbjct: 85 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK 124
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L++L K LIP A
Sbjct: 87 KIETELRDICNDVLSLLEKFLIPNA 111
>pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A38|B Chain B, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A4O|A Chain A, 14-3-3 Protein Zeta Isoform
pdb|1A4O|B Chain B, 14-3-3 Protein Zeta Isoform
pdb|1A4O|C Chain C, 14-3-3 Protein Zeta Isoform
pdb|1A4O|D Chain D, 14-3-3 Protein Zeta Isoform
pdb|1A37|A Chain A, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
pdb|1A37|B Chain B, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
pdb|1QJA|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1QJA|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1QJB|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1IB1|A Chain A, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|B Chain B, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|C Chain C, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|D Chain D, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|3CU8|A Chain A, Impaired Binding Of 14-3-3 To Raf1 Is Linked To Noonan And
Leopard Syndrome
pdb|3CU8|B Chain B, Impaired Binding Of 14-3-3 To Raf1 Is Linked To Noonan And
Leopard Syndrome
pdb|2WH0|A Chain A, Recognition Of An Intrachain Tandem 14-3-3 Binding Site
Within Protein Kinase C Epsilon
pdb|2WH0|B Chain B, Recognition Of An Intrachain Tandem 14-3-3 Binding Site
Within Protein Kinase C Epsilon
pdb|2WH0|C Chain C, Recognition Of An Intrachain Tandem 14-3-3 Binding Site
Within Protein Kinase C Epsilon
pdb|2WH0|D Chain D, Recognition Of An Intrachain Tandem 14-3-3 Binding Site
Within Protein Kinase C Epsilon
pdb|3NKX|A Chain A, Impaired Binding Of 14-3-3 To Raf1 Is Linked To Noonan And
Leopard Syndrome
pdb|3NKX|B Chain B, Impaired Binding Of 14-3-3 To Raf1 Is Linked To Noonan And
Leopard Syndrome
Length = 245
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L++L K LIP A ESKVFY KMK
Sbjct: 83 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK 122
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L++L K LIP A
Sbjct: 85 KIETELRDICNDVLSLLEKFLIPNA 109
>pdb|3RDH|A Chain A, X-Ray Induced Covalent Inhibition Of 14-3-3
pdb|3RDH|B Chain B, X-Ray Induced Covalent Inhibition Of 14-3-3
pdb|3RDH|C Chain C, X-Ray Induced Covalent Inhibition Of 14-3-3
pdb|3RDH|D Chain D, X-Ray Induced Covalent Inhibition Of 14-3-3
Length = 248
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L++L K LIP A ESKVFY KMK
Sbjct: 86 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK 125
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L++L K LIP A
Sbjct: 88 KIETELRDICNDVLSLLEKFLIPNA 112
>pdb|4DNK|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN
5- Monooxygenase Activation Protein, Beta Polypeptide
(Ywhab) From Homo Sapiens At 2.20 A Resolution.
pdb|4DNK|B Chain B, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN
5- Monooxygenase Activation Protein, Beta Polypeptide
(Ywhab) From Homo Sapiens At 2.20 A Resolution
Length = 247
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L +L K+LIP A ESKVFY K K
Sbjct: 86 REKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKXK 125
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
++E EL+DIC+D+L +L K+LIP A
Sbjct: 88 KIEAELQDICNDVLELLDKYLIPNA 112
>pdb|4DX0|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 243
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 28/40 (70%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R ++E EL IC ILN+L HLIP A T ESKVFY KMK
Sbjct: 95 RGKIEAELSKICDGILNLLESHLIPVASTAESKVFYLKMK 134
>pdb|4GNT|A Chain A, Complex Of Chrebp And 14-3-3beta
Length = 245
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L +L K+LI A ESKVFY KMK
Sbjct: 85 REKIEAELQDICNDVLELLDKYLILNATQAESKVFYLKMK 124
>pdb|2BTP|A Chain A, 14-3-3 Protein Theta (Human) Complexed To Peptide
pdb|2BTP|B Chain B, 14-3-3 Protein Theta (Human) Complexed To Peptide
Length = 256
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ IC+ +L +L K+LI A ESKVFY KMK
Sbjct: 105 REKVESELRSICTTVLELLDKYLIANATNPESKVFYLKMK 144
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 12 NTGNHMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCA 55
+T + + L+ Y E +VE EL+ IC+ +L +L K+LI A
Sbjct: 92 DTSDKKLQLIKDYRE----KVESELRSICTTVLELLDKYLIANA 131
>pdb|1O9C|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|1O9D|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|1O9E|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|1O9F|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
Regulatory Complex
pdb|3E6Y|A Chain A, Structure Of 14-3-3 In Complex With The
Differentiation-Inducing Agent Cotylenin A
pdb|3E6Y|B Chain B, Structure Of 14-3-3 In Complex With The
Differentiation-Inducing Agent Cotylenin A
Length = 260
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R ++E EL IC IL +L LIP A +G+SKVFY KMK
Sbjct: 92 RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMK 131
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCALTG 58
++E EL IC IL +L LIP A +G
Sbjct: 94 KIENELSKICDGILKLLDAKLIPSAASG 121
>pdb|2O98|A Chain A, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|B Chain B, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 242
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R ++E EL IC IL +L LIP A +G+SKVFY KMK
Sbjct: 92 RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMK 131
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCALTG 58
++E EL IC IL +L LIP A +G
Sbjct: 94 KIENELSKICDGILKLLDAKLIPSAASG 121
>pdb|3M50|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
Length = 240
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R ++E EL IC IL +L LIP A +G+SKVFY KMK
Sbjct: 92 RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMK 131
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCALTG 58
++E EL IC IL +L LIP A +G
Sbjct: 94 KIENELSKICDGILKLLDAKLIPSAASG 121
>pdb|3AXY|C Chain C, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|D Chain D, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|I Chain I, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|J Chain J, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 240
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R ++E EL IC IL +L HL+P + ESKVFY KMK
Sbjct: 92 RGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMK 131
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 11 DNTGNHM-VTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
+ GN VTL+ Y I E EL IC IL +L HL+P +
Sbjct: 77 EGRGNEEHVTLIKEYRGKI----EAELSKICDGILKLLDSHLVPSSTAA 121
>pdb|3LW1|A Chain A, Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptide
Length = 253
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 90 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 129
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 92 KVETELQGVCDTVLGLLDSHLIKEA 116
>pdb|3P1P|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide
pdb|3P1Q|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin A
pdb|3SML|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin A
Aglycone
pdb|3SMM|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin J
Aglycone
pdb|3SMN|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin
A-Thf
Length = 236
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 90 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 129
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 92 KVETELQGVCDTVLGLLDSHLIKEA 116
>pdb|3IQJ|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (10mer)
pdb|3IQU|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (6mer)
pdb|3IQV|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (6mer) And Stabilisator Fusicoccin
pdb|3MHR|A Chain A, 14-3-3 Sigma In Complex With Yap Ps127-Peptide
Length = 236
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 90 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 129
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 92 KVETELQGVCDTVLGLLDSHLIKEA 116
>pdb|3P1R|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide
pdb|3P1S|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin A
pdb|3SPR|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fc-Thf
pdb|3SMK|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Cotylenin A
Length = 236
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 90 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 129
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 92 KVETELQGVCDTVLGLLDSHLIKEA 116
>pdb|3O8I|A Chain A, Structure Of 14-3-3 Isoform Sigma In Complex With A C-Raf1
Peptide And A Stabilizing Small Molecule Fragment
Length = 239
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 93 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 132
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 95 KVETELQGVCDTVLGLLDSHLIKEA 119
>pdb|3SMO|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin J
Aglycone
Length = 235
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 89 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 128
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 91 KVETELQGVCDTVLGLLDSHLIKEA 115
>pdb|3P1N|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Task-3 Peptide
pdb|3P1O|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Task-3 Peptide And Stabilisator Fusicoccin A
pdb|3UX0|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Task-3 Peptide And Stabilizer Fusicoccin H
Length = 235
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 89 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 128
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 91 KVETELQGVCDTVLGLLDSHLIKEA 115
>pdb|4HQW|A Chain A, Molecular Tweezers Modulate 14-3-3 Protein-protein
Interactions
Length = 236
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 90 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 129
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 92 KVETELQGVCDTVLGLLDSHLIKEA 116
>pdb|4DAT|A Chain A, Structure Of 14-3-3 Sigma In Complex With Padi6 14-3-3
Binding Motif Ii
pdb|4DAU|A Chain A, Structure Of 14-3-3 Sigma In Complex With Padi6 14-3-3
Binding Motif I
pdb|4HRU|A Chain A, Molecular Tweezers Modulate 14-3-3 Protein-protein
Interactions
Length = 234
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 88 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 127
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 90 KVETELQGVCDTVLGLLDSHLIKEA 114
>pdb|3T0L|A Chain A, Small-Molecule Inhibitors Of 14-3-3 Protein-Protein
Interactions From Virtual Screening
pdb|3T0M|A Chain A, Small-Molecule Inhibitors Of 14-3-3 Protein-Protein
Interactions From Virtual Screening
Length = 235
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 89 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 128
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 91 KVETELQGVCDTVLGLLDSHLIKEA 115
>pdb|1YWT|A Chain A, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In
Complex With A Mode-1 Phosphopeptide
pdb|1YWT|B Chain B, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In
Complex With A Mode-1 Phosphopeptide
pdb|1YZ5|A Chain A, The Crystal Structure Of 14-3-3-Sigma At 2.8 Angstrom
Resolution
pdb|1YZ5|B Chain B, The Crystal Structure Of 14-3-3-Sigma At 2.8 Angstrom
Resolution
Length = 248
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 85 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 124
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 87 KVETELQGVCDTVLGLLDSHLIKEA 111
>pdb|2B05|A Chain A, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|B Chain B, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|C Chain C, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|D Chain D, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|E Chain E, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|F Chain F, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
Length = 246
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 63 RERVEKELKDICSDILNVLSKHLIP-CALTG-ESKVFYYKMK 102
RE++EKEL+ +C D+L++L +LI C+ T ESKVFY KMK
Sbjct: 85 REKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMK 126
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 31 QVEKELKDICSDILNVLSKHLIP-CALT 57
++EKEL+ +C D+L++L +LI C+ T
Sbjct: 87 KIEKELEAVCQDVLSLLDNYLIKNCSET 114
>pdb|3UZD|A Chain A, Crystal Structure Of 14-3-3 Gamma
Length = 248
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 63 RERVEKELKDICSDILNVLSKHLIP-CALTG-ESKVFYYKMK 102
RE++EKEL+ +C D+L++L +LI C+ T ESKVFY KMK
Sbjct: 86 REKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMK 127
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 31 QVEKELKDICSDILNVLSKHLIP-CALT 57
++EKEL+ +C D+L++L +LI C+ T
Sbjct: 88 KIEKELEAVCQDVLSLLDNYLIKNCSET 115
>pdb|3U9X|A Chain A, Covalent Attachment Of Pyridoxal-Phosphate Derivatives To
14-3-3 Proteins
Length = 235
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY MK
Sbjct: 89 REKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLXMK 128
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 31 QVEKELKDICSDILNVLSKHLIPCA 55
+VE EL+ +C +L +L HLI A
Sbjct: 91 KVETELQGVCDTVLGLLDSHLIKEA 115
>pdb|2C63|A Chain A, 14-3-3 Protein Eta (Human) Complexed To Peptide
pdb|2C63|B Chain B, 14-3-3 Protein Eta (Human) Complexed To Peptide
pdb|2C63|C Chain C, 14-3-3 Protein Eta (Human) Complexed To Peptide
pdb|2C63|D Chain D, 14-3-3 Protein Eta (Human) Complexed To Peptide
pdb|2C74|A Chain A, 14-3-3 Protein Eta (Human) Complexed To Peptide
pdb|2C74|B Chain B, 14-3-3 Protein Eta (Human) Complexed To Peptide
Length = 247
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 63 RERVEKELKDICSDILNVLSKHLIP-C-ALTGESKVFYYKMK 102
RE++EKEL+ +C+D+L++L K LI C ESKVFY KMK
Sbjct: 87 REKIEKELETVCNDVLSLLDKFLIKNCNDFQYESKVFYLKMK 128
>pdb|4E2E|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN
5- Monooxygenase Activation Protein, Gamma Polypeptide
(Ywhag) From Homo Sapiens At 2.25 A Resolution
Length = 248
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 63 RERVEKELKDICSDILNVLSKHLIP-CALTG-ESKVFYYKMK 102
RE++EKEL+ +C D+L++L +LI C+ T ESKVFY K K
Sbjct: 87 REKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKXK 128
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 31 QVEKELKDICSDILNVLSKHLIP-CALT 57
++EKEL+ +C D+L++L +LI C+ T
Sbjct: 89 KIEKELEAVCQDVLSLLDNYLIKNCSET 116
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 7 VGIGDNTGNHMVTLLHYYEENIMLQVEKELKDIC 40
VGIG N N+ L ++EN++ Q+ +++ D+
Sbjct: 125 VGIGVNAENNERNFLAGHKENVIRQIPRQVSDLT 158
>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
L-Threonine And Amppnp
Length = 352
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 20 LLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCALTGALLKRERVEKELKDICSDILN 79
++H + N + +V K++ D +I ++ P LT L K ERV KE+ +
Sbjct: 66 IVHIADFNQLFEVAKDIPDKVLEIAQIV----WPGPLTFVLKKTERVPKEVTAGLDTVAV 121
Query: 80 VLSKHLIPCALTGESKV 96
+ H I L ES V
Sbjct: 122 RMPAHPIALQLIRESGV 138
>pdb|1DGR|Y Chain Y, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|W Chain W, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|M Chain M, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|Y Chain Y, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 93
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 7 VGIGDNTGNHMVTLLHYYEENIMLQVEKELKDIC 40
VGIG N N+ L ++EN++ Q+ +++ D+
Sbjct: 35 VGIGVNAENNERNFLAGHKENVIRQIPRQVSDLT 68
>pdb|2KJ1|A Chain A, Cytoplasmic Domain Structure Of Bm2 Proton Channel From
Influenza B Virus
pdb|2KJ1|B Chain B, Cytoplasmic Domain Structure Of Bm2 Proton Channel From
Influenza B Virus
pdb|2KJ1|C Chain C, Cytoplasmic Domain Structure Of Bm2 Proton Channel From
Influenza B Virus
pdb|2KJ1|D Chain D, Cytoplasmic Domain Structure Of Bm2 Proton Channel From
Influenza B Virus
Length = 89
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 8 GIGDNTGNHMVTLL-HYYEENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
G T N V++L H Y++ I Q ++ +K++ SD + VLS H++ L+
Sbjct: 18 GPNKETINREVSILRHSYQKEI--QAKETMKEVLSDNMEVLSDHIVIEGLSA 67
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 7 VGIGDNTGNHMVTLLHYYEENIMLQVEKELKDI 39
VGIG N N+ L ++EN++ Q+ +++ D+
Sbjct: 365 VGIGVNAENNERNFLAGHKENVIRQIPRQVSDL 397
>pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Rhodanine Inhibitor
pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of Murd
Ligase
pdb|2XPC|A Chain A, Second-Generation Sulfonamide Inhibitors Of Murd: Activity
Optimisation With Conformationally Rigid Analogues Of D-
Glutamic Acid
Length = 439
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 5 VNVGIGDNTGNHMVTLLH-----YYEE--NIMLQVEKELKDICSDILNVLSKHL 51
VNVG+G N G + LL Y E + L+ L+ + + ILNV H+
Sbjct: 131 VNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHM 184
>pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
Adp
pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
Containing Sulfonamide Inhibitor
pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2Y68|A Chain A, Structure-Based Design Of A New Series Of D-Glutamic Acid-
Based Inhibitors Of Bacterial Murd Ligase
pdb|2Y66|A Chain A, New 5-Benzylidenethiazolidine-4-One Inhibitors Of
Bacterial Murd Ligase: Design, Synthesis, Crystal
Structures, And Biological Evaluation
pdb|2Y67|A Chain A, New 5-Benzylidenethiazolidine-4-One Inhibitors Of
Bacterial Murd Ligase: Design, Synthesis, Crystal
Structures, And Biological Evaluation
pdb|2Y1O|A Chain A, Dual-target Inhibitor Of Murd And Mure Ligases: Design,
Synthesis And Binding Mode Studies
Length = 445
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 5 VNVGIGDNTGNHMVTLLH-----YYEE--NIMLQVEKELKDICSDILNVLSKHL 51
VNVG+G N G + LL Y E + L+ L+ + + ILNV H+
Sbjct: 132 VNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHM 185
>pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 5 VNVGIGDNTGNHMVTLLH-----YYEE--NIMLQVEKELKDICSDILNVLSKHL 51
VNVG+G N G + LL Y E + L+ L+ + + ILNV H+
Sbjct: 131 VNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHM 184
>pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 5 VNVGIGDNTGNHMVTLLH-----YYEE--NIMLQVEKELKDICSDILNVLSKHL 51
VNVG+G N G + LL Y E + L+ L+ + + ILNV H+
Sbjct: 131 VNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHM 184
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 2 LHLVNVGIGDNTGNHMVTLLHYYEENIMLQVEKELKDI 39
LHL+ GI N N+ L ++N++ Q+EK+ KD+
Sbjct: 357 LHLLGFGI--NAENNHRIFLAGDKDNVIDQIEKQAKDL 392
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 2 LHLVNVGIGDNTGNHMVTLLHYYEENIMLQVEKELKDI 39
LHL+ GI N N+ L ++N++ Q+EK+ KD+
Sbjct: 358 LHLLGFGI--NAENNHRIFLAGDKDNVIDQIEKQAKDL 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,274,941
Number of Sequences: 62578
Number of extensions: 120208
Number of successful extensions: 403
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 89
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)