Query psy11576
Match_columns 108
No_of_seqs 186 out of 684
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:02:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 99.9 3.4E-22 7.3E-27 150.7 5.4 88 13-104 74-188 (268)
2 smart00101 14_3_3 14-3-3 homol 99.8 1.7E-20 3.7E-25 144.2 5.7 85 16-104 76-186 (244)
3 PF00244 14-3-3: 14-3-3 protei 99.7 3.1E-18 6.6E-23 130.6 6.1 87 15-105 73-185 (236)
4 COG5040 BMH1 14-3-3 family pro 99.7 3.1E-18 6.7E-23 129.3 3.6 69 40-108 60-132 (268)
5 KOG0841|consensus 99.7 3.3E-17 7.2E-22 125.5 5.5 92 9-104 64-186 (247)
6 smart00101 14_3_3 14-3-3 homol 99.7 2.3E-17 4.9E-22 126.9 4.1 69 40-108 58-130 (244)
7 PF00244 14-3-3: 14-3-3 protei 99.6 8.3E-16 1.8E-20 117.2 2.5 57 52-108 72-128 (236)
8 KOG0841|consensus 99.4 1.2E-13 2.6E-18 106.0 3.9 70 39-108 56-130 (247)
9 PF09124 Endonuc-dimeris: T4 r 57.7 6 0.00013 24.1 1.1 29 3-31 24-52 (54)
10 PF08776 VASP_tetra: VASP tetr 45.9 57 0.0012 18.7 4.6 30 22-51 6-35 (40)
11 cd07618 BAR_Rich1 The Bin/Amph 36.2 2.1E+02 0.0045 22.3 7.1 62 21-86 169-235 (246)
12 PF05184 SapB_1: Saposin-like 35.2 72 0.0016 16.7 3.4 18 37-54 4-21 (39)
13 PF05010 TACC: Transforming ac 32.5 36 0.00078 25.8 2.1 15 34-48 192-206 (207)
14 PHA02127 hypothetical protein 31.0 22 0.00048 21.4 0.6 11 2-12 5-15 (57)
15 PF09086 DUF1924: Domain of un 29.2 66 0.0014 21.8 2.7 16 30-45 68-83 (98)
16 PF15393 DUF4615: Domain of un 27.7 2.2E+02 0.0048 20.0 5.2 24 56-79 53-76 (124)
17 PHA02629 A-type inclusion body 27.4 1.5E+02 0.0033 18.0 4.3 32 18-50 24-55 (61)
18 PHA02604 rI.-1 hypothetical pr 24.2 1.7E+02 0.0037 20.7 4.1 19 31-49 100-118 (126)
19 COG5211 SSU72 RNA polymerase I 24.0 2.3E+02 0.005 21.2 5.0 42 2-47 135-178 (197)
20 PF07462 MSP1_C: Merozoite sur 23.8 1.2E+02 0.0026 26.6 3.9 32 19-51 380-411 (574)
21 PF07061 Swi5: Swi5; InterPro 21.8 1.6E+02 0.0035 19.0 3.5 25 16-49 40-64 (83)
22 PF03980 Nnf1: Nnf1 ; InterPr 21.4 1.6E+02 0.0034 19.4 3.4 22 17-42 8-29 (109)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=99.86 E-value=3.4e-22 Score=150.71 Aligned_cols=88 Identities=33% Similarity=0.514 Sum_probs=77.2
Q ss_pred CC-chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc---------hhhhHHHHHHH-----HHHHHHHHHHH
Q psy11576 13 TG-NHMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCA---------LTGALLKRERV-----EKELKDICSDI 77 (108)
Q Consensus 13 ~~-~~~~~~~~~y~~~~~~kie~EL~~~C~~vL~lid~~Lip~~---------~Km~~dY~rki-----e~El~~ic~e~ 77 (108)
+| ..++.+|++||+ +||.||..||+|||++++++|+|.+ .||+|||+|.. +++..+.++.+
T Consensus 74 k~~~~qv~lI~eyrk----kiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~s 149 (268)
T COG5040 74 KGNTHQVELIKEYRK----KIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSS 149 (268)
T ss_pred CCChhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhH
Confidence 44 468899999999 9999999999999999999999986 89999999943 56666666554
Q ss_pred H------------HhhhhCcCCCCCccchhhhHhhhccc
Q psy11576 78 L------------NVLSKHLIPCALTGESKVFYYKMKDG 104 (108)
Q Consensus 78 l------------~Lid~~lI~~~~~ln~sVFYykmkgD 104 (108)
+ +|+++|||++|+++|+|||||+|.+|
T Consensus 150 lE~YK~AseiA~teLpPT~PirLGLALNfSVFyYEIlns 188 (268)
T COG5040 150 LEAYKAASEIATTELPPTHPIRLGLALNFSVFYYEILNS 188 (268)
T ss_pred HHHHHHHHHHhhccCCCCCchhhhheecceeeeeecccC
Confidence 4 49999999999999999999999886
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=99.81 E-value=1.7e-20 Score=144.20 Aligned_cols=85 Identities=31% Similarity=0.465 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc---------hhhhHHHHHHH-----HHHHHHHHHHHH---
Q psy11576 16 HMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCA---------LTGALLKRERV-----EKELKDICSDIL--- 78 (108)
Q Consensus 16 ~~~~~~~~y~~~~~~kie~EL~~~C~~vL~lid~~Lip~~---------~Km~~dY~rki-----e~El~~ic~e~l--- 78 (108)
++++++++||+ +||+||.++|++|+++||++|+|.. .||+|||+|.+ ++|..++++.+.
T Consensus 76 ~~~~~~~~yr~----kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 76 DHVASIKEYRG----KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 56789999999 9999999999999999999999986 89999999955 456665555443
Q ss_pred ---------HhhhhCcCCCCCccchhhhHhhhccc
Q psy11576 79 ---------NVLSKHLIPCALTGESKVFYYKMKDG 104 (108)
Q Consensus 79 ---------~Lid~~lI~~~~~ln~sVFYykmkgD 104 (108)
+|.++|||++|+++|+|||||++++|
T Consensus 152 ~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~ 186 (244)
T smart00101 152 KSAQDIALAELPPTHPIRLGLALNFSVFYYEILNS 186 (244)
T ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 38899999999999999999999987
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=99.74 E-value=3.1e-18 Score=130.56 Aligned_cols=87 Identities=28% Similarity=0.451 Sum_probs=75.0
Q ss_pred chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc---------hhhhHHHHHHH-----HHHHHHHHHHHH--
Q psy11576 15 NHMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCA---------LTGALLKRERV-----EKELKDICSDIL-- 78 (108)
Q Consensus 15 ~~~~~~~~~y~~~~~~kie~EL~~~C~~vL~lid~~Lip~~---------~Km~~dY~rki-----e~El~~ic~e~l-- 78 (108)
+..++.+++||+ +|++||..+|++++++||++|+|.. .||+|||+|.+ +++..+.++.+.
T Consensus 73 ~~~~~~i~~yk~----kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 73 EKQVKLIKDYKK----KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 468899999999 9999999999999999999999985 89999999955 455555555444
Q ss_pred ----------HhhhhCcCCCCCccchhhhHhhhcccc
Q psy11576 79 ----------NVLSKHLIPCALTGESKVFYYKMKDGL 105 (108)
Q Consensus 79 ----------~Lid~~lI~~~~~ln~sVFYykmkgDY 105 (108)
.|.++||+++|+++|++||||+++||-
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~ 185 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDP 185 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-H
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCCh
Confidence 388999999999999999999999973
No 4
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=99.72 E-value=3.1e-18 Score=129.31 Aligned_cols=69 Identities=43% Similarity=0.628 Sum_probs=60.8
Q ss_pred HHHHHHHHHh----cccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCCccchhhhHhhhcccccCC
Q psy11576 40 CSDILNVLSK----HLIPCALTGALLKRERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMKDGLKKV 108 (108)
Q Consensus 40 C~~vL~lid~----~Lip~~~Km~~dY~rkie~El~~ic~e~l~Lid~~lI~~~~~ln~sVFYykmkgDYyRY 108 (108)
.|.|++-+.. ...|..+.++.+|+++|++||..+|+++++++++|+||.+.+.+++|||||||||||||
T Consensus 60 SWRivsSieQKeEsk~~~~qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRY 132 (268)
T COG5040 60 SWRIVSSIEQKEESKGNTHQVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRY 132 (268)
T ss_pred hhhhhhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHH
Confidence 4555555543 34566789999999999999999999999999999999999999999999999999998
No 5
>KOG0841|consensus
Probab=99.68 E-value=3.3e-17 Score=125.52 Aligned_cols=92 Identities=34% Similarity=0.517 Sum_probs=77.7
Q ss_pred cccC---CC-chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccc----------hhhhHHHHHHH-----HHH
Q psy11576 9 IGDN---TG-NHMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCA----------LTGALLKRERV-----EKE 69 (108)
Q Consensus 9 ~~~~---~~-~~~~~~~~~y~~~~~~kie~EL~~~C~~vL~lid~~Lip~~----------~Km~~dY~rki-----e~E 69 (108)
|+|+ +| +.+++++.+||+ +||.||..+|+++|++++.+|+|+. .||+|||+|.+ ++|
T Consensus 64 iEqKees~~~e~~v~~i~~yr~----~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~e 139 (247)
T KOG0841|consen 64 IEQKEESKGNEEKVKMIKEYRQ----KVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDE 139 (247)
T ss_pred hhhcccCCCcchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhH
Confidence 4454 44 468999999999 9999999999999999999999975 46999999955 467
Q ss_pred HHHHHHHHH------------HhhhhCcCCCCCccchhhhHhhhccc
Q psy11576 70 LKDICSDIL------------NVLSKHLIPCALTGESKVFYYKMKDG 104 (108)
Q Consensus 70 l~~ic~e~l------------~Lid~~lI~~~~~ln~sVFYykmkgD 104 (108)
..++.+..+ ++.++|||++|+++|+|||||++.+.
T Consensus 140 rke~~~~sl~aYk~a~~ia~~~l~PthPirLgLaLnfSvf~yeilns 186 (247)
T KOG0841|consen 140 RKEAADQSLEAYKEASEIAKAELQPTHPIRLGLALNFSVFYYEILNS 186 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHcC
Confidence 777766554 37899999999999999999998763
No 6
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=99.68 E-value=2.3e-17 Score=126.93 Aligned_cols=69 Identities=35% Similarity=0.521 Sum_probs=58.9
Q ss_pred HHHHHHHHHhc----ccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCCccchhhhHhhhcccccCC
Q psy11576 40 CSDILNVLSKH----LIPCALTGALLKRERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMKDGLKKV 108 (108)
Q Consensus 40 C~~vL~lid~~----Lip~~~Km~~dY~rkie~El~~ic~e~l~Lid~~lI~~~~~ln~sVFYykmkgDYyRY 108 (108)
.+.+++.++.. ..+...+++.+|++++++|+..+|+++++|+|++|||.+++.+++|||+|||||||||
T Consensus 58 s~R~i~sie~ke~~~~~~~~~~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRY 130 (244)
T smart00101 58 SWRIISSIEQKEESRGNEDHVASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRY 130 (244)
T ss_pred HHHHHhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHH
Confidence 44555555443 2334568899999999999999999999999999999999999999999999999998
No 7
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=99.57 E-value=8.3e-16 Score=117.21 Aligned_cols=57 Identities=39% Similarity=0.600 Sum_probs=53.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCCccchhhhHhhhcccccCC
Q psy11576 52 IPCALTGALLKRERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMKDGLKKV 108 (108)
Q Consensus 52 ip~~~Km~~dY~rkie~El~~ic~e~l~Lid~~lI~~~~~ln~sVFYykmkgDYyRY 108 (108)
.+...+++.+|++++++|+..+|+++++++|++|+|.+++.+++|||+|||||||||
T Consensus 72 ~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRY 128 (236)
T PF00244_consen 72 NEKQVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRY 128 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcccccc
Confidence 356789999999999999999999999999999999999999999999999999998
No 8
>KOG0841|consensus
Probab=99.42 E-value=1.2e-13 Score=106.00 Aligned_cols=70 Identities=40% Similarity=0.559 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcc----cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCCc-cchhhhHhhhcccccCC
Q psy11576 39 ICSDILNVLSKHL----IPCALTGALLKRERVEKELKDICSDILNVLSKHLIPCALT-GESKVFYYKMKDGLKKV 108 (108)
Q Consensus 39 ~C~~vL~lid~~L----ip~~~Km~~dY~rkie~El~~ic~e~l~Lid~~lI~~~~~-ln~sVFYykmkgDYyRY 108 (108)
..+++++.|+... .+.+++++.+|+.+++.|+..+|++++.+++.++||.++. .+++|||+|||||||||
T Consensus 56 asWriisSiEqKees~~~e~~v~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~ry 130 (247)
T KOG0841|consen 56 ASWRIISSIEQKEESKGNEEKVKMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRY 130 (247)
T ss_pred HHHHHhhhhhhcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHH
Confidence 5678888776642 2345999999999999999999999999999999999887 78899999999999998
No 9
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=57.72 E-value=6 Score=24.08 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=19.3
Q ss_pred ceeeeccccCCCchhhHHHHHHHHhhHHH
Q psy11576 3 HLVNVGIGDNTGNHMVTLLHYYEENIMLQ 31 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~k 31 (108)
++..+|++=+++....++++-||+|+++.
T Consensus 24 em~~~G~~y~~~~tK~~Lvk~fkKql~k~ 52 (54)
T PF09124_consen 24 EMDSYGFEYNEKDTKAQLVKIFKKQLKKA 52 (54)
T ss_dssp HHHHTT----TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHhCCcCCccccHHHHHHHHHHHHHHh
Confidence 45568999999999999999999966553
No 10
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=45.94 E-value=57 Score=18.66 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=22.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy11576 22 HYYEENIMLQVEKELKDICSDILNVLSKHL 51 (108)
Q Consensus 22 ~~y~~~~~~kie~EL~~~C~~vL~lid~~L 51 (108)
...++.|...+-+||...=++|++.+..-|
T Consensus 6 e~~KqEIL~EvrkEl~K~K~EIIeA~~~eL 35 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVKEEIIEAIRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788899999999998886654
No 11
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=36.19 E-value=2.1e+02 Score=22.28 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=47.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc-----chhhhHHHHHHHHHHHHHHHHHHHHhhhhCcC
Q psy11576 21 LHYYEENIMLQVEKELKDICSDILNVLSKHLIPC-----ALTGALLKRERVEKELKDICSDILNVLSKHLI 86 (108)
Q Consensus 21 ~~~y~~~~~~kie~EL~~~C~~vL~lid~~Lip~-----~~Km~~dY~rkie~El~~ic~e~l~Lid~~lI 86 (108)
+++-+. |+|..-..+..++++++.+..-+. -++.-.+|+|+.-+-+.++..++-.++++.+-
T Consensus 169 ~e~a~~----k~E~~kD~~~~dm~~~l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~~~~~ 235 (246)
T cd07618 169 MDEAGN----KVEQCKDQLAADMYNFASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQDKWME 235 (246)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345555 999888888899999997653332 27778899999888888888888888875543
No 12
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=35.22 E-value=72 Score=16.75 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhccccc
Q psy11576 37 KDICSDILNVLSKHLIPC 54 (108)
Q Consensus 37 ~~~C~~vL~lid~~Lip~ 54 (108)
-++|..+++.+++.|..+
T Consensus 4 C~~C~~~v~~i~~~l~~~ 21 (39)
T PF05184_consen 4 CDICKFVVKEIEKLLKNN 21 (39)
T ss_dssp HHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHcC
Confidence 468888998888877433
No 13
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=32.53 E-value=36 Score=25.83 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy11576 34 KELKDICSDILNVLS 48 (108)
Q Consensus 34 ~EL~~~C~~vL~lid 48 (108)
.||..||+|+|+-+.
T Consensus 192 ~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 192 EELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHhc
Confidence 699999999997653
No 14
>PHA02127 hypothetical protein
Probab=30.95 E-value=22 Score=21.37 Aligned_cols=11 Identities=55% Similarity=0.809 Sum_probs=8.9
Q ss_pred cceeeeccccC
Q psy11576 2 LHLVNVGIGDN 12 (108)
Q Consensus 2 ~~~~~~~~~~~ 12 (108)
-||||.|.||-
T Consensus 5 thlvnfg~g~l 15 (57)
T PHA02127 5 THLVNFGHGEL 15 (57)
T ss_pred eeEEeecccee
Confidence 49999998764
No 15
>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.
Probab=29.23 E-value=66 Score=21.84 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11576 30 LQVEKELKDICSDILN 45 (108)
Q Consensus 30 ~kie~EL~~~C~~vL~ 45 (108)
.|||+.+..-|++|+.
T Consensus 68 ~kVEKwf~RNC~dvlg 83 (98)
T PF09086_consen 68 AKVEKWFKRNCNDVLG 83 (98)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccchhhhc
Confidence 3899999999999985
No 16
>PF15393 DUF4615: Domain of unknown function (DUF4615)
Probab=27.68 E-value=2.2e+02 Score=20.00 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q psy11576 56 LTGALLKRERVEKELKDICSDILN 79 (108)
Q Consensus 56 ~Km~~dY~rkie~El~~ic~e~l~ 79 (108)
..+.||||.+++.|.......+-.
T Consensus 53 r~~fGdYR~kM~~e~~k~~~~~~~ 76 (124)
T PF15393_consen 53 RSTFGDYRAKMKEEERKQLKASRN 76 (124)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 446899999999888877765543
No 17
>PHA02629 A-type inclusion body protein; Provisional
Probab=27.36 E-value=1.5e+02 Score=18.01 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q psy11576 18 VTLLHYYEENIMLQVEKELKDICSDILNVLSKH 50 (108)
Q Consensus 18 ~~~~~~y~~~~~~kie~EL~~~C~~vL~lid~~ 50 (108)
....-+|.+.+++-+|.||.. |.+.+..+++.
T Consensus 24 c~s~c~ferk~iavleaelr~-~metik~lekf 55 (61)
T PHA02629 24 CTSSCEFERKIIAVLEAELRK-SMETIKALEKF 55 (61)
T ss_pred ccchhHhhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 445567777788899999976 77777777654
No 18
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=24.18 E-value=1.7e+02 Score=20.75 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy11576 31 QVEKELKDICSDILNVLSK 49 (108)
Q Consensus 31 kie~EL~~~C~~vL~lid~ 49 (108)
++..+|.++-+||..++..
T Consensus 100 ~l~s~L~N~~DdI~~~~~q 118 (126)
T PHA02604 100 ELPSALQSTLDDITGLCYQ 118 (126)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 4445555555555555443
No 19
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=23.97 E-value=2.3e+02 Score=21.20 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=25.1
Q ss_pred cceeeeccccCCCch--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy11576 2 LHLVNVGIGDNTGNH--MVTLLHYYEENIMLQVEKELKDICSDILNVL 47 (108)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~~y~~~~~~kie~EL~~~C~~vL~li 47 (108)
.|++||.|.++..+. ..+.|-+.-. ++.+|...+-.-+.+++
T Consensus 135 v~~iNvDIkD~~e~A~~G~kaILelvd----~L~~~~e~lE~~~~sil 178 (197)
T COG5211 135 VFMINVDIKDTPEDAIAGAKAILELVD----VLAKEEERLEYAVDSIL 178 (197)
T ss_pred EEEEEeeccCChhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 589999999997663 3455555554 55555444444344443
No 20
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=23.83 E-value=1.2e+02 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=26.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy11576 19 TLLHYYEENIMLQVEKELKDICSDILNVLSKHL 51 (108)
Q Consensus 19 ~~~~~y~~~~~~kie~EL~~~C~~vL~lid~~L 51 (108)
+++--||. |++++|.++..+-..|.+++|+.|
T Consensus 380 pLAg~Ykt-iKKqlenhv~afntNitdmLdSRl 411 (574)
T PF07462_consen 380 PLAGMYKT-IKKQLENHVNAFNTNITDMLDSRL 411 (574)
T ss_pred chHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55566765 677999999999999999998876
No 21
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=21.76 E-value=1.6e+02 Score=19.01 Aligned_cols=25 Identities=32% Similarity=0.683 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q psy11576 16 HMVTLLHYYEENIMLQVEKELKDICSDILNVLSK 49 (108)
Q Consensus 16 ~~~~~~~~y~~~~~~kie~EL~~~C~~vL~lid~ 49 (108)
.+..++++| .|++++|..++++|-.
T Consensus 40 ~hI~lLheY---------NeiKD~gQ~Lig~iA~ 64 (83)
T PF07061_consen 40 RHIKLLHEY---------NEIKDIGQGLIGLIAD 64 (83)
T ss_pred HHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence 455666667 4688888888887754
No 22
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.43 E-value=1.6e+02 Score=19.37 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11576 17 MVTLLHYYEENIMLQVEKELKDICSD 42 (108)
Q Consensus 17 ~~~~~~~y~~~~~~kie~EL~~~C~~ 42 (108)
+.+++..... .+.+|+..||.+
T Consensus 8 ~~Q~~~~l~~----~~~~Ef~~I~~E 29 (109)
T PF03980_consen 8 HQQMIEFLEE----NCKKEFEEILEE 29 (109)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHH
Confidence 4577777777 899999999864
Done!