RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11576
(108 letters)
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell
regulator protein, cryptospo parvum, structural
genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP:
a.118.7.1
Length = 227
Score = 57.3 bits (138), Expect = 2e-11
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
+ K++K + + + + + SK F K+K
Sbjct: 90 VFSLRKDIKAFLQSFEDCVDRLVEK---SFFSKFFKLKVK 126
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3,
struc genomics, structural genomics consortium, SGC,
protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Length = 260
Score = 50.6 bits (120), Expect = 6e-09
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R +VE EL DIC+DIL +L KHLIP A + +SKVFY+KMK
Sbjct: 113 RSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMK 152
Score = 34.5 bits (78), Expect = 0.004
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
+VE EL DIC+DIL +L KHLIP A +
Sbjct: 110 GKYRSKVEAELTDICNDILTMLDKHLIPTATSP 142
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein,
secreted, prote binding, signaling protein; HET: SEP;
1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A*
3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A*
3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A
1a38_A 1a4o_A* 1ib1_A* ...
Length = 236
Score = 49.9 bits (118), Expect = 1e-08
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 62 KRERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE+VE EL+ +C +L +L HLI A ES+VFY KMK
Sbjct: 89 YREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMK 129
Score = 33.7 bits (76), Expect = 0.007
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
+VE EL+ +C +L +L HLI A
Sbjct: 87 REYREKVETELQGVCDTVLGLLDSHLIKEAGDA 119
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3,
phosphoserine, structural GE consortium, SGC, ywhae;
HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A*
3m50_A* 3m51_A* 3axy_C*
Length = 234
Score = 48.3 bits (114), Expect = 4e-08
Identities = 31/40 (77%), Positives = 33/40 (82%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R+ VE ELK IC DIL+VL KHLIP A TGESKVFYYKMK
Sbjct: 87 RQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMK 126
Score = 30.6 bits (68), Expect = 0.065
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
VE ELK IC DIL+VL KHLIP A TG
Sbjct: 84 REYRQMVETELKLICCDILDVLDKHLIPAANTG 116
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling
protein, signaling protein-protei complex; HET: SEP;
1.90A {Homo sapiens}
Length = 261
Score = 48.0 bits (113), Expect = 5e-08
Identities = 31/40 (77%), Positives = 33/40 (82%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R+ VE ELK IC DIL+VL KHLIP A TGESKVFYYKMK
Sbjct: 113 RQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMK 152
Score = 30.6 bits (68), Expect = 0.075
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
VE ELK IC DIL+VL KHLIP A TG
Sbjct: 110 REYRQMVETELKLICCDILDVLDKHLIPAANTG 142
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family,
activating drug; HET: TPO; 2.3A {Nicotiana tabacum}
SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Length = 260
Score = 47.6 bits (112), Expect = 9e-08
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R ++E EL IC IL +L LIP A +G+SKVFY KMK
Sbjct: 92 RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMK 131
Score = 30.6 bits (68), Expect = 0.070
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 29 MLQVEKELKDICSDILNVLSKHLIPCALTG 58
++E EL IC IL +L LIP A +G
Sbjct: 92 RSKIENELSKICDGILKLLDAKLIPSAASG 121
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics
consortium, MA alpha, phosphoserine, phosphothreonine;
HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A*
2c63_A* 2c74_A* 4dnk_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A*
2btp_A*
Length = 248
Score = 45.6 bits (107), Expect = 4e-07
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTG--ESKVFYYKMK 102
RE++EKEL+ +C D+L++L +LI ESKVFY KMK
Sbjct: 86 REKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMK 127
Score = 34.0 bits (77), Expect = 0.005
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 29 MLQVEKELKDICSDILNVLSKHLIPCALTGALLKR 63
++EKEL+ +C D+L++L +LI +
Sbjct: 86 REKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom
structural genomics consortium, SGC; HET: SEP; 2.08A
{Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Length = 268
Score = 45.2 bits (106), Expect = 5e-07
Identities = 6/40 (15%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
+ E+ + D++ ++ +L+ + ++ F K+K
Sbjct: 110 KRDFEESILLESEDVIRIIDDNLLMYS-EEGARAFCIKLK 148
Score = 31.7 bits (71), Expect = 0.024
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCA 55
E+I E+ + D++ ++ +L+ +
Sbjct: 107 EDIKRDFEESILLESEDVIRIIDDNLLMYS 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.64
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 30/119 (25%)
Query: 4 LV---NVGIGDNTGNHMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHL-------IP 53
L+ + D T + ++ L E+K + L+ + L P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 54 --CALTGALLKRE--RVE-------KELKDICSDILNVLSKHLIPCALTGESKVFYYKM 101
++ ++ + +L I LNVL E + + ++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--------PAEYRKMFDRL 378
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 26.1 bits (58), Expect = 2.8
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 60 LLKRERVEKELKDICSDI 77
+ +RE+VE +L ++ I
Sbjct: 219 MFQREKVEVQLPELFHKI 236
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 25.5 bits (56), Expect = 3.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 62 KRERVEKELKDICSDILNVLSKH 84
K RV +L+ + ++ L KH
Sbjct: 25 KPGRVTNQLQYLHKVVMKALWKH 47
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A
{Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A*
3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A*
3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A*
3mul_A* 2nxb_A ...
Length = 127
Score = 25.0 bits (55), Expect = 4.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 62 KRERVEKELKDICSDILNVLSKH 84
K +R +L+ + +L L KH
Sbjct: 14 KPKRQTNQLQYLLRVVLKTLWKH 36
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 25.2 bits (56), Expect = 4.4
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 60 LLKRERVEKELKDICSDI 77
+ +RE+VE +L ++ I
Sbjct: 185 MFQREKVEVQLPELFHKI 202
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich,
helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET:
GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP:
a.211.1.1 d.218.1.8
Length = 393
Score = 25.2 bits (56), Expect = 4.8
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 62 KRERVEKELKDICSDILNVLSKHLIPCALTGESKVFYY---KMKD 103
KR E + DI + I + ++ + + G K Y KM+D
Sbjct: 210 KRREREALVDDIVTKIKSYTTEQGLFGDVYGRPKHIYSIYRKMRD 254
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A
{Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Length = 216
Score = 25.0 bits (55), Expect = 6.3
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 67 EKELKDICSDILNVLSKHLIPCALTGESKVF 97
E ++ + + S + ++T + K F
Sbjct: 42 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF 72
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
structural genomi montreal-kingston bacterial structural
genomics initiative; 1.90A {Escherichia coli} SCOP:
c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Length = 531
Score = 25.0 bits (55), Expect = 6.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 5 VNVGIGDNTGNHMVTLLHYYEENIMLQVE 33
NVG+G G +V ++ +L VE
Sbjct: 305 GNVGVGIADGIGLVAREEGCADDFILTVE 333
>1b7f_A Protein (SXL-lethal protein), RNA
(5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing
regulation, RNP domain, RNA complex; 2.60A {Drosophila
melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A*
1sxl_A 2sxl_A
Length = 168
Score = 24.5 bits (54), Expect = 7.3
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 67 EKELKDICSDILNVLSKHLIPCALTGESKVF 97
++EL + I + + ++ TG S +
Sbjct: 17 DRELYALFRAIGPINTCRIMRDYKTGYSYGY 47
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex,
AU-rich element, transcription/RNA complex; 1.80A {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H
1d8z_A 1d9a_A 3hi9_A
Length = 167
Score = 24.1 bits (53), Expect = 9.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 67 EKELKDICSDILNVLSKHLIPCALTGESK----VFYYKMKD 103
++E + + I + S L+ +TG+S V Y KD
Sbjct: 16 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 56
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 24.5 bits (53), Expect = 9.6
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 62 KRERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYK 100
K ++V+K L+ + I L+ G+ Y K
Sbjct: 216 KDDKVQKGLQVVFKKIYKSLTPEARKHYAHGDGSGNYAK 254
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein
structure initiative, midwest center for structural
genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae
subsp} PDB: 3nzr_A 3lm7_A
Length = 249
Score = 24.5 bits (53), Expect = 9.8
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 15 NHMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCALTGALLKRERVEKELKDIC 74
N M ++Y + + L V KD +I + H++ L+ +++D
Sbjct: 2 NAMKLTPNFYRDRVCLNVLAGSKDNAREIYDAAEGHVLVGVLSKNYPDVASAVVDMRDYA 61
Query: 75 SDILNVLS 82
I N LS
Sbjct: 62 KLIDNALS 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.405
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,599,996
Number of extensions: 83671
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 39
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)