RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11576
(108 letters)
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 51.0 bits (122), Expect = 1e-09
Identities = 6/40 (15%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
+ E+ + D++ ++ +L+ + ++ F K+K
Sbjct: 65 KRDFEESILLESEDVIRIIDDNLLMYS-EEGARAFCIKLK 103
Score = 38.3 bits (89), Expect = 5e-05
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCALTGA 59
E+I E+ + D++ ++ +L+ + GA
Sbjct: 62 EDIKRDFEESILLESEDVIRIIDDNLLMYSEEGA 95
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 236
Score = 51.0 bits (122), Expect = 1e-09
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
R ++E EL IC IL +L LIP A +G+SKVFY KMK
Sbjct: 88 RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMK 127
Score = 33.7 bits (77), Expect = 0.002
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
++E EL IC IL +L LIP A +G
Sbjct: 85 REYRSKIENELSKICDGILKLLDAKLIPSAASG 117
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 49.9 bits (119), Expect = 4e-09
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
RE++E EL+DIC+D+L++L K LIP A ESKVFY KMK
Sbjct: 83 REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK 122
Score = 32.5 bits (74), Expect = 0.006
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 26 ENIMLQVEKELKDICSDILNVLSKHLIPCALTG 58
++E EL+DIC+D+L++L K LIP A
Sbjct: 80 REYREKIETELRDICNDVLSLLEKFLIPNASQA 112
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Length = 220
Score = 46.4 bits (110), Expect = 6e-08
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 63 RERVEKELKDICSDILNVLSKHLIPCALTGESKVFYYKMK 102
+ K++K + + + + + SK F K+K
Sbjct: 88 VFSLRKDIKAFLQSFEDCVDRLVEK---SFFSKFFKLKVK 124
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 27.2 bits (60), Expect = 0.21
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 37 KDICSDILNVLSKHLIPCALTGALLKRERVEKELKDICSDILNVLSKHLIPCALTGESKV 96
++ + L+K+ I + G E+V + SD+ LS+ LT + +
Sbjct: 20 LELTRQVKEKLAKNGICQRIFG-----EKVLGLSQGSVSDM---LSRPKPWSKLTQKGRE 71
Query: 97 FYYKMKDGL 105
+ +M+ L
Sbjct: 72 PFIRMQLWL 80
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 111
Score = 25.6 bits (56), Expect = 0.80
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 29 MLQVEKEL--KDICSDILNVLSKHLIPCALTGALLKRERVEKELKDICSDILNVLSKHLI 86
++ + EL I + VL+ + + L G E + + SD+L+ +
Sbjct: 20 IVAMSPELDTYSITKRVKEVLTDNNLGQRLFG-----ESILGLTQGSVSDLLS---RPKP 71
Query: 87 PCALTGESKVFYYKMKDGL 105
L+ + + + +M+ L
Sbjct: 72 WHKLSLKGREPFVRMQLWL 90
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 24.8 bits (54), Expect = 1.5
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 37 KDICSDILNVLSKHLIPCALTGALLKRERVEKELKDICSDILNVLSKHLIPCALTGESKV 96
+I + L KH I + G V + S+IL + LT + K
Sbjct: 12 AEIAFQVKEQLLKHNIGQRVFG-----HYVLGLSQGSVSEILA---RPKPWRKLTVKGKE 63
Query: 97 FYYKMKDGL 105
+ KMK L
Sbjct: 64 PFIKMKQFL 72
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
{Helicobacter pylori [TaxId: 210]}
Length = 151
Score = 24.6 bits (54), Expect = 2.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 13 TGNHMVTLLHYYEENIMLQVEKELKDI 39
TG ++ L H I+ +EK ++D+
Sbjct: 82 TGFYLTVLNHDNYTEILEVLEKTMQDV 108
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 24.6 bits (53), Expect = 2.6
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 66 VEKELKDICSDILNVLSKHLIPCALTGESKVFYY 99
+ E + I + L + +TG
Sbjct: 2 IRPEYLRVLRKIYDRLKNEKVNWVVTGSLSFALQ 35
Score = 23.8 bits (51), Expect = 4.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 32 VEKELKDICSDILNVLSKHLIPCALTGAL 60
+ E + I + L + +TG+L
Sbjct: 2 IRPEYLRVLRKIYDRLKNEKVNWVVTGSL 30
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 24.1 bits (51), Expect = 3.8
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 20 LLHYYEENIMLQV---EKELKDICSDILNVLSKH 50
++ +Y++ + + + +DILN L K+
Sbjct: 147 IVDFYKKTGIWAGVDASQPPATVWADILNKLGKN 180
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 23.7 bits (51), Expect = 5.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 4 LVNVGIGDNTGNHMVTLLHYYEENIMLQVEKELKDI 39
+++V I D N VT E I+ Q L ++
Sbjct: 77 ILSVNIADFQENQWVTCFQESAEAILGQNAAYLGEL 112
>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 1122
Score = 23.6 bits (51), Expect = 6.7
Identities = 5/38 (13%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 49 KHLIPCALTGALLKRERVEKELKD--ICSDILNVLSKH 84
K ++ C G + + + +C + ++S+
Sbjct: 1015 KFVLACPRAGFVCAASSLGGGAHESSLCEQLRGIISEG 1052
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 251
Score = 23.2 bits (49), Expect = 8.3
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 1 MLHLVNVGIGD 11
+L V +G+ D
Sbjct: 2 LLTFVGLGLWD 12
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
{Haemophilus influenzae [TaxId: 727]}
Length = 161
Score = 23.1 bits (50), Expect = 8.5
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 13 TGNHMVTLLHYYEENIMLQVEKELKDI 39
TG +M + E+ + ++D+
Sbjct: 83 TGFYMSLIGTPNEQKVSEAWLASMQDV 109
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase
{Cow (Bos taurus), alpha1 [TaxId: 9913]}
Length = 212
Score = 23.0 bits (48), Expect = 9.1
Identities = 12/91 (13%), Positives = 25/91 (27%)
Query: 15 NHMVTLLHYYEENIMLQVEKELKDICSDILNVLSKHLIPCALTGALLKRERVEKELKDIC 74
N+ I V+ + + VL K RV + ++
Sbjct: 100 NNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAAL 159
Query: 75 SDILNVLSKHLIPCALTGESKVFYYKMKDGL 105
+ P + + + ++ M D L
Sbjct: 160 AGHPRAHFLDADPGFVHSDGTISHHDMYDYL 190
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.405
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,638
Number of extensions: 16312
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 38
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)