Query psy11577
Match_columns 89
No_of_seqs 101 out of 252
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 22:03:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 99.9 1.3E-23 4.5E-28 162.5 3.0 61 28-88 111-172 (270)
2 2gpv_G Nuclear receptor corepr 15.2 47 0.0016 17.3 0.6 9 2-10 16-24 (26)
3 3sl9_C B-cell CLL/lymphoma 9 p 9.5 48 0.0017 19.9 -0.6 17 40-56 5-21 (55)
4 3spe_A Phikz029; structural pr 7.4 1.1E+02 0.0038 23.7 0.5 18 51-68 9-26 (295)
5 1wc3_A Adenylate cyclase; solu 7.1 2.3E+02 0.0077 19.3 1.9 30 32-62 8-37 (219)
6 3mr7_A Adenylate/guanylate cyc 6.2 2.3E+02 0.0077 18.5 1.5 17 46-62 1-17 (189)
7 2ds2_A Sweet protein mabinlin- 6.1 1.3E+02 0.0043 16.4 0.2 6 84-89 28-33 (33)
8 2k0z_A Uncharacterized protein 5.9 1E+02 0.0035 18.6 -0.4 18 45-62 7-24 (110)
9 3izc_v 60S acidic ribosomal pr 5.3 1.4E+02 0.0047 19.5 0.0 13 14-26 84-96 (106)
10 2r18_A Capsid assembly protein 5.0 2E+02 0.007 20.1 0.7 5 85-89 118-122 (139)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=99.87 E-value=1.3e-23 Score=162.47 Aligned_cols=61 Identities=43% Similarity=0.556 Sum_probs=58.6
Q ss_pred cccccCCCCCCCCCcCCCCcccccceeEEeeeccCC-CCCCCCCCCCCCCCCceecccCCCC
Q psy11577 28 AGEFGPEELPGFGLVHDLPADKLKVREVVHIDIGND-PVSAGDYKETEDPAKFKSEKTGRGV 88 (89)
Q Consensus 28 ~~~~~~~D~G~~ENVf~Ls~~eLk~REV~~IDIA~D-~i~~kdYk~eEDPt~F~S~KTGRGP 88 (89)
.+|+|.+|+|+++|||+||+++|++|+|++||||+| ++++++|+++|||++|+|+||||||
T Consensus 111 IET~h~~d~g~~eNv~~L~~~~l~~reV~~IDIa~~~~~~~~dY~~eeDp~~f~S~ktgRGP 172 (270)
T 1kcm_A 111 IETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSVKTGRGP 172 (270)
T ss_dssp EEEEEESSSSCCSSTTCCCHHHHTTCEEEEECTTCGGGSCGGGCCGGGCTTTCCCTTTCCCC
T ss_pred EEEEEcCCCCCcccccCCChHHhcCceEEEEecccCcccccccCCcccCcchheecccCCCC
Confidence 469999999999999999999999999999999985 5999999999999999999999998
No 2
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=15.19 E-value=47 Score=17.29 Aligned_cols=9 Identities=56% Similarity=1.302 Sum_probs=6.8
Q ss_pred chhHHHhhh
Q psy11577 2 KYDKWEKRK 10 (89)
Q Consensus 2 ~~~~~~~~~ 10 (89)
+||.|+.|.
T Consensus 16 ~yd~~e~~~ 24 (26)
T 2gpv_G 16 KYDQWEEXX 24 (26)
T ss_pred chhhHhhhc
Confidence 689998763
No 3
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=9.53 E-value=48 Score=19.86 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=12.5
Q ss_pred CCcCCCCcccccceeEE
Q psy11577 40 GLVHDLPADKLKVREVV 56 (89)
Q Consensus 40 ENVf~Ls~~eLk~REV~ 56 (89)
+|.-+||.++|..|+-.
T Consensus 5 ~n~~gls~eqlehrers 21 (55)
T 3sl9_C 5 ENPDGLSQEQLEHRERS 21 (55)
T ss_dssp --CCCCCHHHHHHHHHH
T ss_pred cCCcccCHHHHHHHHHH
Confidence 78899999999887653
No 4
>3spe_A Phikz029; structural protein; 2.40A {Pseudomonas phage phikz} PDB: 3j0i_A 3j0h_A
Probab=7.40 E-value=1.1e+02 Score=23.70 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.1
Q ss_pred cceeEEeeeccCCCCCCC
Q psy11577 51 KVREVVHIDIGNDPVSAG 68 (89)
Q Consensus 51 k~REV~~IDIA~D~i~~k 68 (89)
..|.+++|||+.|.||.-
T Consensus 9 ~sriiVa~d~ved~vP~~ 26 (295)
T 3spe_A 9 PSRLIVAIEIVEDEIPLT 26 (295)
T ss_dssp CCEEEEEEEEEEEEECCC
T ss_pred ceeEEEeHhhhhhccchh
Confidence 579999999999887754
No 5
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=7.11 E-value=2.3e+02 Score=19.30 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=14.6
Q ss_pred cCCCCCCCCCcCCCCcccccceeEEeeeccC
Q psy11577 32 GPEELPGFGLVHDLPADKLKVREVVHIDIGN 62 (89)
Q Consensus 32 ~~~D~G~~ENVf~Ls~~eLk~REV~~IDIA~ 62 (89)
|.-..|...+.|.|.++. +..-|.|+||+.
T Consensus 8 ~~~~~~~~~~~~~l~~e~-~~vtvlF~DI~g 37 (219)
T 1wc3_A 8 HHHSSGLVPRGSHMRPEP-RLITILFSDIVG 37 (219)
T ss_dssp -----------CCCCCEE-EEEEEEEEEEES
T ss_pred ccccccccccccccCCce-eEEEEEEEEecC
Confidence 334567777788887654 666788999984
No 6
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=6.25 E-value=2.3e+02 Score=18.54 Aligned_cols=17 Identities=6% Similarity=0.247 Sum_probs=12.7
Q ss_pred CcccccceeEEeeeccC
Q psy11577 46 PADKLKVREVVHIDIGN 62 (89)
Q Consensus 46 s~~eLk~REV~~IDIA~ 62 (89)
|+.+.++.-|.|+||+.
T Consensus 1 s~~e~r~vtvlf~Di~g 17 (189)
T 3mr7_A 1 SNAERRLCAILAADMAG 17 (189)
T ss_dssp -CCEEEEEEEEEEEECC
T ss_pred CCCcEEEEEEEEEEchh
Confidence 34566777889999985
No 7
>2ds2_A Sweet protein mabinlin-2 chain A; plant protein, SEED storage protein; 1.70A {Capparis masaikai}
Probab=6.12 E-value=1.3e+02 Score=16.45 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=1.0
Q ss_pred cCCCCC
Q psy11577 84 TGRGVD 89 (89)
Q Consensus 84 TGRGP~ 89 (89)
-||||+
T Consensus 28 qG~~p~ 33 (33)
T 2ds2_A 28 FGGQPD 33 (33)
T ss_dssp CC----
T ss_pred cCCCCC
Confidence 367764
No 8
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=5.85 E-value=1e+02 Score=18.57 Aligned_cols=18 Identities=6% Similarity=0.438 Sum_probs=12.8
Q ss_pred CCcccccceeEEeeeccC
Q psy11577 45 LPADKLKVREVVHIDIGN 62 (89)
Q Consensus 45 Ls~~eLk~REV~~IDIA~ 62 (89)
+++++|....+++||+..
T Consensus 7 is~~el~~~~~~liDvR~ 24 (110)
T 2k0z_A 7 ISLEEVNFNDFIVVDVRE 24 (110)
T ss_dssp EETTTCCGGGSEEEEEEC
T ss_pred eCHHHhccCCeEEEECCC
Confidence 455666666788999984
No 9
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=5.33 E-value=1.4e+02 Score=19.52 Aligned_cols=13 Identities=54% Similarity=0.703 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHhh
Q psy11577 14 EEEEKKKEEEEEE 26 (89)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (89)
.++++|+|++||+
T Consensus 84 ~~~e~kee~~EEs 96 (106)
T 3izc_v 84 AEEEKEEEAAEES 96 (106)
T ss_dssp -------------
T ss_pred ccccccccccccc
No 10
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=5.05 E-value=2e+02 Score=20.10 Aligned_cols=5 Identities=60% Similarity=1.219 Sum_probs=0.0
Q ss_pred CCCCC
Q psy11577 85 GRGVD 89 (89)
Q Consensus 85 GRGP~ 89 (89)
|||||
T Consensus 118 GRGPd 122 (139)
T 2r18_A 118 GRGPN 122 (139)
T ss_dssp TCCCC
T ss_pred CCCCC
Done!