RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11577
         (89 letters)



>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score = 66.0 bits (161), Expect = 3e-15
 Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 42  VHDLPADKLKVREVVHIDIGN-DPVSAGDYKETEDPAKFKSEKTGRG 87
           VH L  +  K  E ++IDI +   V + DYK  EDPAKFKS KTGRG
Sbjct: 125 VHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRG 171


>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
           DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 24.7 bits (53), Expect = 1.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 2   KYDKWEKRKKSDEEEEKKKEEEEEE 26
              +  KRK  +E  EK++ EE E+
Sbjct: 79  DSKRLAKRKLIEENREKRRREELEK 103


>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
           3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 324

 Score = 24.6 bits (53), Expect = 1.8
 Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 3/22 (13%)

Query: 3   YDKWEKRKKSDEEEEKKKEEEE 24
            D++E+ K+    ++  KE ++
Sbjct: 306 RDRYEELKR---IDDAMKELQK 324


>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
          carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 250

 Score = 23.6 bits (51), Expect = 4.5
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 12 SDEEEEKKKEEEEEEGAGEFGPEELPGFGLVHDLPADKLKVREVVHI 58
          S+EE  +   + EEEG      ++     L    P D  ++     I
Sbjct: 40 SEEENGRLLGQMEEEG-ILRRLKKYDNCWLALTDPRDVARIESKTVI 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.304    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 358,756
Number of extensions: 15935
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 37
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.3 bits)