BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11582
(1760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 34.7 bits (78), Expect = 0.52, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 1449 LQERCEHQCRNITGLEERCTSLKTTIDQLNLTLE----RASAGETELRGEIQTLQ----- 1499
L ER C G+ + + +T++D+ TLE + +E R ++ +Q
Sbjct: 11 LDERFGSYCPTTCGIADFLNNYQTSVDKDLRTLEGILYQVENKTSEARELVKAIQISYNP 70
Query: 1500 ------RNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVN 1553
N+ + NS+S E++ + + L+ + E+ R LQE ++ + LR + V
Sbjct: 71 DQPSKPNNIESATKNSKSMMEEIMKYETLISTHESTIRFLQEIYNSNSQKIVNLRDKVVQ 130
Query: 1554 RLEN-----QDDLKAMTQALKREIKDLSDAHTQES 1583
N QD +K + R+ +D+++ +ES
Sbjct: 131 LEANCQEPCQDTVK-IHDVTGRDCQDVANKGAKES 164
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 1293 DDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQS 1352
D L + ++++ L D Q NK ++ +Q ++A+Q E+ AA +S
Sbjct: 27 DFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKS 86
Query: 1353 EAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAE-KRALQDEL 1411
M EE+ +LT + ++ + E + + K++ +E A+L+A+ + +D +
Sbjct: 87 RKM---LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTV 143
Query: 1412 SRTEARVTKLELQRVALEGDQQ 1433
+ +T + Q +A +G +Q
Sbjct: 144 QIHD--ITGKDCQDIANKGAKQ 163
>pdb|2FXO|A Chain A, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|B Chain B, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|C Chain C, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|D Chain D, Structure Of The Human Beta-myosin S2 Fragment
Length = 129
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 28/103 (27%)
Query: 1407 LQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRN------- 1459
L++ L ++EAR +LE + V+L ++ LQ+ +Q ++ NL +ERC+ +N
Sbjct: 25 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 84
Query: 1460 -----------------ITG----LEERCTSLKTTIDQLNLTL 1481
+T LE+ C+ LK ID L LTL
Sbjct: 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127
>pdb|2FXM|A Chain A, Structure Of The Human Beta-Myosin S2 Fragment
pdb|2FXM|B Chain B, Structure Of The Human Beta-Myosin S2 Fragment
Length = 129
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 28/103 (27%)
Query: 1407 LQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRN------- 1459
L++ L ++EAR +LE + V+L ++ LQ+ +Q ++ NL +ERC+ +N
Sbjct: 25 LKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 84
Query: 1460 -----------------ITG----LEERCTSLKTTIDQLNLTL 1481
+T LE+ C+ LK ID L LTL
Sbjct: 85 VKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 28/114 (24%)
Query: 1398 ARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQC 1457
A + E L++ L ++EAR +LE + V+L ++ LQ+ +Q ++ NL +ERC+
Sbjct: 860 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 919
Query: 1458 RN------------------------ITG----LEERCTSLKTTIDQLNLTLER 1483
+N +T LE+ C+ LK ID L LTL +
Sbjct: 920 KNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 973
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 28/112 (25%)
Query: 1398 ARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQC 1457
A + E L++ L ++EAR +LE + V+L ++ LQ+ +Q ++ NL +ERC+
Sbjct: 860 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 919
Query: 1458 RN------------------------ITG----LEERCTSLKTTIDQLNLTL 1481
+N +T LE+ C+ LK ID L LTL
Sbjct: 920 KNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 971
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 564 HIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEAND 601
+I+ KGD+ + +LLDR M + KYE+ IEA D
Sbjct: 162 YIDPEKGDIVTVVSPVLLDRETM--ETPKYELVIEAKD 197
>pdb|3M9B|A Chain A, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|B Chain B, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|C Chain C, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|D Chain D, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|E Chain E, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|F Chain F, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|G Chain G, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|H Chain H, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|I Chain I, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|J Chain J, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|K Chain K, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9B|L Chain L, Crystal Structure Of The Amino Terminal Coiled Coil Domain
And The Inter Domain Of The Mycobacterium Tuberculosis
Proteasomal Atpase Mpa
pdb|3M9D|A Chain A, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|B Chain B, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|C Chain C, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|D Chain D, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|E Chain E, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|F Chain F, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|J Chain J, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|K Chain K, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|L Chain L, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|M Chain M, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|N Chain N, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
pdb|3M9D|O Chain O, Crystal Structure Of The Prokaryotic Ubiquintin-Like Protein
Pup Complexed With The Hexameric Proteasomal Atpase Mpa
Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
Length = 251
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1640 PSESPMNGGDSEEITKLCRERSELRNKLEN 1669
P +SP++ GD+ E+ +L RE + LR +LEN
Sbjct: 13 PRDSPLSSGDAAELEQLRREAAVLREQLEN 42
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 30.4 bits (67), Expect = 9.0, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 27/136 (19%)
Query: 418 MSQQVTSLTSQLDQTKAQLAQVGREKEALVKNI-EMLRVEKSALEKNKREINEMVESLNS 476
++Q T+ ++L + + + ++ +L NI E+LR + S+ N + E L S
Sbjct: 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRS 117
Query: 477 NLDKVQKNNSRLSKINESLQSEKLFLQN------ELDRINSDMD--------------AR 516
++ +++ K+ E +Q +L +N ++ R+ D+D AR
Sbjct: 118 RIEVLKR------KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR 171
Query: 517 EVELRGKEDMNRRLRE 532
EV+L+ ED ++L +
Sbjct: 172 EVDLKDYEDQQKQLEQ 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.124 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,500,370
Number of Sequences: 62578
Number of extensions: 1424816
Number of successful extensions: 5654
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 5149
Number of HSP's gapped (non-prelim): 515
length of query: 1760
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1648
effective length of database: 7,964,601
effective search space: 13125662448
effective search space used: 13125662448
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)