Query psy11582
Match_columns 1760
No_of_seqs 260 out of 298
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:12:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15035 Rootletin: Ciliary ro 100.0 6.7E-53 1.5E-57 458.0 19.5 182 54-251 1-182 (182)
2 KOG0161|consensus 100.0 2.2E-18 4.9E-23 233.9 137.2 916 392-1428 838-1784(1930)
3 KOG0161|consensus 100.0 3E-16 6.5E-21 213.6 143.5 1041 397-1610 836-1904(1930)
4 KOG4674|consensus 99.9 3.6E-12 7.8E-17 171.6 163.4 70 1356-1425 1232-1301(1822)
5 TIGR02168 SMC_prok_B chromosom 99.9 1.1E-12 2.4E-17 180.7 101.4 252 392-645 172-429 (1179)
6 KOG4674|consensus 99.8 3.1E-10 6.7E-15 153.4 161.1 911 474-1552 375-1377(1822)
7 TIGR02169 SMC_prok_A chromosom 99.8 2.1E-11 4.6E-16 168.3 105.3 270 392-663 170-460 (1164)
8 TIGR00606 rad50 rad50. This fa 99.8 1.4E-09 3E-14 151.8 116.8 120 1362-1483 972-1093(1311)
9 COG1196 Smc Chromosome segrega 99.8 3.9E-11 8.5E-16 165.2 98.8 248 392-641 179-436 (1163)
10 TIGR02168 SMC_prok_B chromosom 99.8 8.9E-12 1.9E-16 171.8 89.8 168 858-1028 262-430 (1179)
11 TIGR02169 SMC_prok_A chromosom 99.8 2.2E-11 4.7E-16 168.2 92.5 208 1275-1482 673-885 (1164)
12 TIGR00606 rad50 rad50. This fa 99.8 1.4E-08 3.1E-13 141.8 117.0 117 1272-1397 973-1091(1311)
13 COG1196 Smc Chromosome segrega 99.8 9.3E-11 2E-15 161.5 90.9 268 737-1030 168-436 (1163)
14 PF10174 Cast: RIM-binding pro 99.7 4.6E-09 9.9E-14 136.4 85.0 77 1079-1155 641-717 (775)
15 PF10174 Cast: RIM-binding pro 99.7 1.4E-08 2.9E-13 132.1 86.7 370 282-669 1-403 (775)
16 PRK02224 chromosome segregatio 99.6 1.7E-08 3.7E-13 136.4 80.8 143 511-653 258-400 (880)
17 PRK02224 chromosome segregatio 99.6 4.7E-08 1E-12 132.2 76.8 59 592-650 346-404 (880)
18 PF01576 Myosin_tail_1: Myosin 99.5 1.5E-15 3.4E-20 200.9 0.6 156 1272-1444 577-735 (859)
19 KOG0996|consensus 99.5 1E-06 2.3E-11 114.6 76.1 642 837-1576 340-1025(1293)
20 PF01576 Myosin_tail_1: Myosin 99.5 7.1E-15 1.5E-19 194.7 0.4 671 394-1158 161-855 (859)
21 PRK03918 chromosome segregatio 99.4 1.1E-05 2.3E-10 109.7 79.5 31 926-956 666-696 (880)
22 PRK03918 chromosome segregatio 99.4 1E-05 2.3E-10 109.7 79.1 27 755-781 451-477 (880)
23 PRK04863 mukB cell division pr 99.4 3.7E-05 8E-10 107.4 97.1 298 392-713 300-618 (1486)
24 PF12128 DUF3584: Protein of u 99.3 6.6E-05 1.4E-09 104.8 89.5 71 846-916 604-674 (1201)
25 KOG0250|consensus 99.2 0.00013 2.8E-09 96.0 66.3 58 1267-1331 652-709 (1074)
26 PF12128 DUF3584: Protein of u 99.1 0.00048 1E-08 96.5 93.8 192 617-827 601-792 (1201)
27 PF09730 BicD: Microtubule-ass 99.1 1.7E-05 3.7E-10 102.5 53.6 349 1267-1637 256-701 (717)
28 PF07888 CALCOCO1: Calcium bin 98.9 7.4E-05 1.6E-09 93.8 47.8 102 393-494 144-245 (546)
29 KOG0996|consensus 98.9 0.0016 3.4E-08 86.3 83.1 148 519-666 364-515 (1293)
30 PF09730 BicD: Microtubule-ass 98.9 0.0016 3.5E-08 84.8 66.1 128 1270-1408 546-695 (717)
31 KOG0250|consensus 98.8 0.0024 5.2E-08 84.7 71.8 297 231-584 151-474 (1074)
32 PRK04863 mukB cell division pr 98.8 0.0062 1.3E-07 86.0 98.9 79 1293-1371 1063-1141(1486)
33 PRK01156 chromosome segregatio 98.8 0.0049 1.1E-07 84.4 78.7 9 1268-1276 837-845 (895)
34 PF07888 CALCOCO1: Calcium bin 98.7 0.00052 1.1E-08 86.4 47.4 66 577-642 279-344 (546)
35 KOG0933|consensus 98.7 0.0051 1.1E-07 80.4 80.1 170 1445-1614 823-1024(1174)
36 PF05701 WEMBL: Weak chloropla 98.7 0.0051 1.1E-07 79.2 64.4 60 763-822 172-234 (522)
37 PF05701 WEMBL: Weak chloropla 98.6 0.0077 1.7E-07 77.6 67.0 139 797-943 300-438 (522)
38 PF05483 SCP-1: Synaptonemal c 98.5 0.011 2.4E-07 74.8 93.4 109 840-948 536-644 (786)
39 PF00038 Filament: Intermediat 98.4 0.0028 6E-08 76.3 41.0 287 398-706 3-298 (312)
40 KOG0964|consensus 98.3 0.036 7.9E-07 72.6 70.2 211 594-829 670-884 (1200)
41 KOG4673|consensus 98.3 0.032 6.8E-07 70.5 66.0 77 1277-1353 867-953 (961)
42 KOG4643|consensus 98.3 0.056 1.2E-06 71.1 59.2 53 839-891 506-558 (1195)
43 PF00261 Tropomyosin: Tropomyo 98.2 0.0016 3.4E-08 75.7 32.0 217 437-660 11-227 (237)
44 PF00038 Filament: Intermediat 98.2 0.033 7.2E-07 67.1 44.1 89 582-670 5-94 (312)
45 PF00261 Tropomyosin: Tropomyo 98.2 0.0017 3.8E-08 75.4 31.2 223 450-672 10-232 (237)
46 KOG0994|consensus 98.2 0.088 1.9E-06 69.8 57.2 34 551-585 1315-1348(1758)
47 KOG0976|consensus 98.1 0.077 1.7E-06 68.0 71.3 331 454-826 91-444 (1265)
48 KOG4673|consensus 98.1 0.08 1.7E-06 67.1 65.9 117 758-881 539-655 (961)
49 KOG0977|consensus 98.1 0.018 3.8E-07 73.1 38.3 153 397-549 40-193 (546)
50 KOG4643|consensus 98.1 0.13 2.9E-06 67.8 62.7 54 598-665 297-350 (1195)
51 KOG0977|consensus 98.0 0.02 4.4E-07 72.6 36.6 138 520-671 58-196 (546)
52 KOG0978|consensus 97.9 0.2 4.3E-06 65.5 71.5 114 982-1108 508-621 (698)
53 KOG0978|consensus 97.9 0.2 4.4E-06 65.4 68.2 129 425-553 53-188 (698)
54 PRK04778 septation ring format 97.9 0.21 4.6E-06 65.4 45.8 203 392-594 98-337 (569)
55 PF15070 GOLGA2L5: Putative go 97.9 0.22 4.8E-06 65.2 50.2 65 602-666 167-231 (617)
56 KOG0995|consensus 97.9 0.18 3.9E-06 63.8 44.1 245 404-675 233-498 (581)
57 PF13514 AAA_27: AAA domain 97.9 0.43 9.3E-06 67.3 92.1 17 722-738 501-517 (1111)
58 KOG0018|consensus 97.9 0.31 6.8E-06 65.3 68.2 130 514-651 223-352 (1141)
59 PRK10246 exonuclease subunit S 97.8 0.43 9.3E-06 66.8 80.9 35 779-813 147-181 (1047)
60 COG0419 SbcC ATPase involved i 97.8 0.41 8.9E-06 66.1 82.0 12 1267-1278 852-863 (908)
61 PF07111 HCR: Alpha helical co 97.8 0.28 6E-06 63.3 74.3 33 797-829 195-227 (739)
62 PF05557 MAD: Mitotic checkpoi 97.8 7.2E-05 1.6E-09 99.5 10.3 25 594-618 256-280 (722)
63 PRK11637 AmiB activator; Provi 97.7 0.024 5.2E-07 71.5 31.8 41 463-503 90-130 (428)
64 PF13514 AAA_27: AAA domain 97.7 0.63 1.4E-05 65.7 94.8 77 392-472 242-327 (1111)
65 PRK04778 septation ring format 97.7 0.41 8.8E-06 62.8 53.4 120 760-892 279-398 (569)
66 PF15070 GOLGA2L5: Putative go 97.7 0.42 9.2E-06 62.7 50.7 132 528-659 142-273 (617)
67 KOG0964|consensus 97.7 0.51 1.1E-05 62.6 80.7 105 450-554 260-364 (1200)
68 PHA02562 46 endonuclease subun 97.7 0.022 4.7E-07 74.0 30.6 30 404-433 172-201 (562)
69 PHA02562 46 endonuclease subun 97.6 0.077 1.7E-06 69.0 35.1 63 584-646 340-402 (562)
70 KOG1029|consensus 97.6 0.37 7.9E-06 62.2 38.1 129 798-937 388-518 (1118)
71 PF05483 SCP-1: Synaptonemal c 97.6 0.51 1.1E-05 60.7 87.7 203 454-662 98-300 (786)
72 KOG0933|consensus 97.6 0.65 1.4E-05 61.9 80.3 109 1000-1108 908-1024(1174)
73 KOG0995|consensus 97.5 0.63 1.4E-05 59.2 46.1 139 466-629 225-366 (581)
74 COG1340 Uncharacterized archae 97.4 0.49 1.1E-05 56.3 38.4 94 393-486 7-100 (294)
75 PF05911 DUF869: Plant protein 97.4 1.1 2.4E-05 60.1 60.0 171 1378-1569 586-760 (769)
76 PF05557 MAD: Mitotic checkpoi 97.4 0.0004 8.7E-09 92.6 9.9 131 1280-1418 403-533 (722)
77 PF09726 Macoilin: Transmembra 97.4 0.18 3.9E-06 67.0 33.0 227 416-656 421-655 (697)
78 PF05911 DUF869: Plant protein 97.3 1.3 2.8E-05 59.4 63.4 244 394-639 19-309 (769)
79 KOG1029|consensus 97.3 1.1 2.3E-05 58.3 38.4 136 526-668 424-559 (1118)
80 PRK11637 AmiB activator; Provi 97.3 0.35 7.6E-06 61.2 34.3 16 609-624 198-213 (428)
81 PF09726 Macoilin: Transmembra 97.2 0.2 4.2E-06 66.6 30.9 107 989-1108 543-649 (697)
82 COG4942 Membrane-bound metallo 97.0 1.7 3.7E-05 54.2 33.4 72 392-463 38-109 (420)
83 PF05622 HOOK: HOOK protein; 97.0 0.00052 1.1E-08 91.4 4.0 49 625-673 483-531 (713)
84 TIGR02680 conserved hypothetic 96.9 5.3 0.00011 57.7 71.6 15 1267-1281 680-694 (1353)
85 PF07111 HCR: Alpha helical co 96.8 3.1 6.7E-05 54.3 68.5 356 448-834 190-570 (739)
86 KOG0999|consensus 96.8 2.6 5.6E-05 53.2 76.1 77 419-495 7-83 (772)
87 PF14662 CCDC155: Coiled-coil 96.7 1.5 3.2E-05 49.3 27.5 178 466-661 5-182 (193)
88 KOG0980|consensus 96.7 4.1 9E-05 54.2 40.2 19 169-190 98-116 (980)
89 PF09787 Golgin_A5: Golgin sub 96.6 2.1 4.5E-05 55.6 32.8 154 398-552 108-301 (511)
90 PF04849 HAP1_N: HAP1 N-termin 96.6 2.2 4.8E-05 51.3 30.1 213 392-614 55-302 (306)
91 KOG0980|consensus 96.6 4.9 0.00011 53.5 36.6 83 543-625 463-545 (980)
92 COG0419 SbcC ATPase involved i 96.6 6.6 0.00014 54.6 82.9 11 410-420 182-192 (908)
93 PF09789 DUF2353: Uncharacteri 96.6 0.42 9.1E-06 57.7 23.6 221 392-633 2-227 (319)
94 COG4942 Membrane-bound metallo 96.5 1.6 3.5E-05 54.4 28.9 73 476-548 38-110 (420)
95 KOG0962|consensus 96.5 7.5 0.00016 54.4 99.8 262 403-668 189-474 (1294)
96 PF04849 HAP1_N: HAP1 N-termin 96.3 1.3 2.7E-05 53.3 25.5 83 1439-1521 222-304 (306)
97 PF14915 CCDC144C: CCDC144C pr 96.3 3.6 7.9E-05 49.0 40.8 106 517-625 62-167 (305)
98 KOG0976|consensus 96.3 6.6 0.00014 51.5 69.5 111 477-587 86-196 (1265)
99 KOG0994|consensus 96.3 8.3 0.00018 52.5 59.0 70 497-566 1225-1294(1758)
100 KOG0946|consensus 96.2 6.2 0.00013 52.2 32.2 41 584-624 802-842 (970)
101 PF05622 HOOK: HOOK protein; 96.2 0.0021 4.6E-08 85.7 2.5 54 594-647 362-415 (713)
102 COG1579 Zn-ribbon protein, pos 96.2 1.1 2.4E-05 52.3 23.6 20 595-614 149-168 (239)
103 KOG0018|consensus 96.2 9 0.0002 52.3 78.7 140 425-567 206-345 (1141)
104 KOG1003|consensus 96.1 3.2 7E-05 46.7 27.4 98 458-562 49-146 (205)
105 PF14662 CCDC155: Coiled-coil 96.1 3.3 7.2E-05 46.6 27.1 103 484-586 68-170 (193)
106 KOG0963|consensus 96.1 7.4 0.00016 50.4 41.4 120 880-1001 185-309 (629)
107 PF11559 ADIP: Afadin- and alp 96.0 0.27 5.8E-06 53.4 16.8 119 1265-1390 27-149 (151)
108 TIGR03185 DNA_S_dndD DNA sulfu 96.0 10 0.00022 50.9 37.2 41 408-448 211-251 (650)
109 PF12718 Tropomyosin_1: Tropom 95.9 0.87 1.9E-05 49.3 20.0 128 529-663 4-134 (143)
110 PF10473 CENP-F_leu_zip: Leuci 95.9 0.98 2.1E-05 48.7 20.0 110 536-652 7-116 (140)
111 COG4372 Uncharacterized protei 95.9 6.2 0.00013 48.2 33.9 37 434-470 74-110 (499)
112 PRK09039 hypothetical protein; 95.9 0.94 2E-05 55.8 22.7 115 521-649 70-184 (343)
113 KOG1003|consensus 95.9 4.1 9E-05 45.8 27.8 194 480-673 8-201 (205)
114 PF08317 Spc7: Spc7 kinetochor 95.8 7.1 0.00015 47.9 31.6 33 392-424 68-100 (325)
115 PF15619 Lebercilin: Ciliary p 95.8 3.9 8.5E-05 46.6 25.2 103 521-623 8-110 (194)
116 COG5185 HEC1 Protein involved 95.7 8.2 0.00018 48.2 38.7 124 466-593 292-415 (622)
117 KOG4593|consensus 95.7 11 0.00024 49.5 72.3 23 594-616 250-272 (716)
118 PRK09039 hypothetical protein; 95.7 0.98 2.1E-05 55.6 21.7 69 522-590 113-181 (343)
119 COG1340 Uncharacterized archae 95.7 6.9 0.00015 46.9 36.8 69 425-493 32-100 (294)
120 KOG0946|consensus 95.6 13 0.00028 49.4 31.0 67 410-476 647-713 (970)
121 PF12718 Tropomyosin_1: Tropom 95.5 1.8 3.9E-05 47.0 20.6 63 515-577 77-139 (143)
122 PF06160 EzrA: Septation ring 95.5 13 0.00029 48.9 57.4 91 762-861 277-367 (560)
123 PF06160 EzrA: Septation ring 95.4 14 0.00031 48.7 57.0 387 595-1030 75-497 (560)
124 KOG4807|consensus 95.4 7.4 0.00016 47.4 26.2 80 639-736 293-376 (593)
125 PF14915 CCDC144C: CCDC144C pr 95.3 8.8 0.00019 45.9 39.3 39 594-632 220-258 (305)
126 PF15619 Lebercilin: Ciliary p 95.2 7.7 0.00017 44.3 25.1 79 532-610 68-147 (194)
127 COG5185 HEC1 Protein involved 95.1 13 0.00028 46.6 43.5 76 552-627 322-400 (622)
128 PF15450 DUF4631: Domain of un 95.1 14 0.00031 47.1 58.0 370 274-681 10-388 (531)
129 PF09789 DUF2353: Uncharacteri 95.1 5.4 0.00012 48.5 24.4 160 465-633 12-178 (319)
130 KOG0612|consensus 95.0 24 0.00052 49.1 68.4 39 595-633 609-647 (1317)
131 PF10473 CENP-F_leu_zip: Leuci 94.9 3.3 7.2E-05 44.8 19.8 99 516-614 15-113 (140)
132 PRK10929 putative mechanosensi 94.7 31 0.00066 48.8 40.6 56 488-543 178-233 (1109)
133 PF05667 DUF812: Protein of un 94.5 24 0.00051 46.8 37.2 120 576-706 442-563 (594)
134 COG4372 Uncharacterized protei 94.4 17 0.00037 44.7 34.3 70 581-650 217-286 (499)
135 PF09728 Taxilin: Myosin-like 94.4 17 0.00036 44.5 40.1 143 392-554 15-157 (309)
136 PLN02939 transferase, transfer 94.4 20 0.00044 49.5 29.6 178 488-675 140-324 (977)
137 PF05010 TACC: Transforming ac 94.2 14 0.00029 42.7 28.2 115 559-673 8-133 (207)
138 KOG1853|consensus 94.1 14 0.00031 42.8 25.8 89 1079-1168 96-184 (333)
139 KOG0979|consensus 94.1 33 0.00072 47.0 57.7 152 392-544 195-358 (1072)
140 COG3883 Uncharacterized protei 94.1 17 0.00036 43.3 27.7 76 520-595 129-204 (265)
141 PF09755 DUF2046: Uncharacteri 94.0 19 0.0004 43.7 38.8 217 403-633 24-253 (310)
142 PF08317 Spc7: Spc7 kinetochor 93.9 21 0.00046 43.9 29.8 58 595-652 209-266 (325)
143 KOG4593|consensus 93.9 30 0.00066 45.7 60.4 198 624-843 420-637 (716)
144 KOG0962|consensus 93.7 46 0.001 47.2 102.7 168 425-603 183-354 (1294)
145 PF15066 CAGE1: Cancer-associa 93.7 26 0.00056 44.2 26.7 40 854-893 315-354 (527)
146 PF13851 GAS: Growth-arrest sp 93.6 16 0.00035 41.9 23.2 110 399-508 27-139 (201)
147 PF13851 GAS: Growth-arrest sp 93.6 17 0.00036 41.8 23.3 105 920-1030 28-132 (201)
148 PF09728 Taxilin: Myosin-like 93.5 24 0.00051 43.2 40.0 86 428-513 23-108 (309)
149 KOG0999|consensus 93.5 29 0.00064 44.3 69.0 120 536-655 198-371 (772)
150 KOG0612|consensus 93.4 48 0.001 46.4 63.0 117 464-583 443-559 (1317)
151 PF08614 ATG16: Autophagy prot 93.3 1 2.2E-05 51.2 13.0 107 392-505 74-180 (194)
152 KOG0971|consensus 93.3 41 0.0009 45.4 77.8 238 418-681 229-474 (1243)
153 PF05667 DUF812: Protein of un 93.1 41 0.0009 44.7 39.0 93 392-484 328-423 (594)
154 KOG1853|consensus 93.0 20 0.00044 41.7 22.1 117 840-959 29-145 (333)
155 TIGR01843 type_I_hlyD type I s 92.8 15 0.00032 46.0 23.7 8 439-446 86-93 (423)
156 PF13870 DUF4201: Domain of un 92.8 19 0.00042 40.2 23.5 90 476-565 42-131 (177)
157 PF09755 DUF2046: Uncharacteri 92.7 29 0.00063 42.1 38.9 22 908-929 271-292 (310)
158 PF12037 DUF3523: Domain of un 92.5 29 0.00063 41.6 23.6 84 1345-1428 132-220 (276)
159 smart00787 Spc7 Spc7 kinetocho 92.4 23 0.00049 43.5 23.3 114 847-960 142-259 (312)
160 PF09304 Cortex-I_coil: Cortex 92.3 6.5 0.00014 40.4 15.4 63 524-586 8-70 (107)
161 PF05010 TACC: Transforming ac 92.0 28 0.00061 40.2 30.4 177 470-659 24-204 (207)
162 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.8 18 0.00039 38.7 19.3 78 525-612 52-129 (132)
163 smart00787 Spc7 Spc7 kinetocho 91.8 39 0.00085 41.4 31.0 32 393-424 64-95 (312)
164 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.8 21 0.00045 38.2 19.8 58 607-667 71-128 (132)
165 PRK10246 exonuclease subunit S 91.6 84 0.0018 44.8 85.4 18 1267-1285 986-1003(1047)
166 TIGR01843 type_I_hlyD type I s 91.0 39 0.00085 42.3 24.4 16 470-485 82-97 (423)
167 PF00769 ERM: Ezrin/radixin/mo 90.9 8.5 0.00018 45.5 17.2 98 1286-1383 1-98 (246)
168 TIGR00634 recN DNA repair prot 90.6 43 0.00094 44.3 25.1 45 441-485 161-205 (563)
169 PF09304 Cortex-I_coil: Cortex 90.2 9.3 0.0002 39.4 14.1 99 547-645 3-101 (107)
170 PF15397 DUF4618: Domain of un 90.1 48 0.001 39.5 28.8 181 470-667 39-223 (258)
171 PF06008 Laminin_I: Laminin Do 90.1 48 0.001 39.5 31.4 24 563-586 149-172 (264)
172 TIGR03007 pepcterm_ChnLen poly 90.1 28 0.00062 45.0 22.6 38 392-429 154-191 (498)
173 PF00769 ERM: Ezrin/radixin/mo 89.9 15 0.00032 43.6 17.9 125 410-541 2-126 (246)
174 KOG0993|consensus 89.6 63 0.0014 40.2 35.3 58 1079-1139 119-185 (542)
175 PF14073 Cep57_CLD: Centrosome 89.6 15 0.00032 41.3 16.4 143 1273-1425 1-150 (178)
176 TIGR03007 pepcterm_ChnLen poly 89.5 52 0.0011 42.6 24.3 32 479-510 157-188 (498)
177 TIGR02977 phageshock_pspA phag 89.5 20 0.00042 41.7 18.4 52 1269-1320 23-75 (219)
178 PF04111 APG6: Autophagy prote 89.3 4 8.6E-05 49.9 13.1 92 984-1088 43-134 (314)
179 PF12795 MscS_porin: Mechanose 88.9 55 0.0012 38.5 22.6 54 609-662 157-210 (240)
180 PF05384 DegS: Sensor protein 88.6 45 0.00097 37.1 22.4 145 449-593 7-152 (159)
181 TIGR02680 conserved hypothetic 88.3 1.6E+02 0.0035 43.2 77.2 91 392-482 223-324 (1353)
182 PF11559 ADIP: Afadin- and alp 88.2 19 0.0004 39.3 16.2 92 1279-1370 55-150 (151)
183 KOG0982|consensus 88.2 41 0.00089 42.1 20.1 161 1288-1462 213-385 (502)
184 KOG4360|consensus 88.0 92 0.002 40.0 27.4 182 457-638 161-372 (596)
185 TIGR03185 DNA_S_dndD DNA sulfu 87.8 1.2E+02 0.0026 41.0 40.8 36 633-668 424-459 (650)
186 TIGR01005 eps_transp_fam exopo 86.9 78 0.0017 43.4 24.5 43 473-515 184-226 (754)
187 PF04582 Reo_sigmaC: Reovirus 86.9 0.8 1.7E-05 55.3 5.0 127 1429-1569 27-153 (326)
188 COG3883 Uncharacterized protei 86.7 79 0.0017 37.9 26.5 71 492-562 33-103 (265)
189 TIGR01005 eps_transp_fam exopo 86.6 63 0.0014 44.2 23.4 28 518-545 237-264 (754)
190 PF04111 APG6: Autophagy prote 86.4 8.8 0.00019 47.0 13.7 104 400-503 10-119 (314)
191 PF13870 DUF4201: Domain of un 86.3 62 0.0013 36.2 23.0 90 498-587 43-132 (177)
192 PF04156 IncA: IncA protein; 85.7 28 0.0006 39.2 16.4 59 517-575 129-187 (191)
193 PF04156 IncA: IncA protein; 85.4 42 0.00091 37.8 17.6 67 393-459 82-148 (191)
194 PF10481 CENP-F_N: Cenp-F N-te 85.3 59 0.0013 38.7 18.5 59 488-546 65-123 (307)
195 PRK10698 phage shock protein P 85.2 58 0.0012 38.1 18.9 125 1270-1417 24-149 (222)
196 PF10481 CENP-F_N: Cenp-F N-te 85.1 78 0.0017 37.7 19.3 30 470-499 19-48 (307)
197 KOG0971|consensus 84.9 1.7E+02 0.0037 40.1 93.5 142 517-658 367-518 (1243)
198 PF09787 Golgin_A5: Golgin sub 84.7 1.4E+02 0.0031 39.1 34.2 17 565-581 244-260 (511)
199 PF10168 Nup88: Nuclear pore c 84.5 56 0.0012 44.4 20.8 60 466-525 540-600 (717)
200 PF12325 TMF_TATA_bd: TATA ele 84.2 31 0.00068 36.6 14.6 22 569-590 91-112 (120)
201 PRK10929 putative mechanosensi 84.0 2.2E+02 0.0048 40.7 46.8 133 760-903 177-312 (1109)
202 PF06818 Fez1: Fez1; InterPro 83.7 91 0.002 36.0 21.6 96 532-634 10-105 (202)
203 PF06818 Fez1: Fez1; InterPro 83.2 95 0.0021 35.8 22.3 47 491-537 60-106 (202)
204 PF10146 zf-C4H2: Zinc finger- 82.6 32 0.00069 40.4 15.3 77 597-673 27-103 (230)
205 KOG0804|consensus 82.6 51 0.0011 41.6 17.5 94 594-687 353-446 (493)
206 PF11932 DUF3450: Protein of u 82.6 43 0.00093 39.6 16.8 126 1023-1167 39-165 (251)
207 PF15450 DUF4631: Domain of un 82.4 1.7E+02 0.0036 38.1 63.2 27 803-829 348-374 (531)
208 PF15066 CAGE1: Cancer-associa 82.4 1.6E+02 0.0034 37.7 28.6 30 573-602 403-432 (527)
209 PF10146 zf-C4H2: Zinc finger- 82.3 36 0.00079 40.0 15.6 99 452-554 5-103 (230)
210 PF06785 UPF0242: Uncharacteri 82.3 71 0.0015 38.9 17.8 143 392-537 78-220 (401)
211 KOG0963|consensus 82.2 1.8E+02 0.004 38.4 48.4 71 758-832 198-268 (629)
212 KOG4360|consensus 82.2 1.7E+02 0.0036 37.9 21.7 100 565-664 203-302 (596)
213 PF06785 UPF0242: Uncharacteri 81.8 45 0.00097 40.6 16.0 105 1276-1380 85-189 (401)
214 PRK11281 hypothetical protein; 81.7 2.7E+02 0.0058 40.0 41.6 132 449-586 129-260 (1113)
215 KOG0992|consensus 80.3 1.9E+02 0.0041 37.3 48.0 90 550-645 187-278 (613)
216 KOG0804|consensus 79.6 82 0.0018 39.9 17.8 109 393-507 319-427 (493)
217 KOG4809|consensus 79.5 2.1E+02 0.0045 37.3 35.1 74 520-593 333-406 (654)
218 PF12777 MT: Microtubule-bindi 79.1 1.8E+02 0.0038 36.3 23.3 48 1357-1404 267-314 (344)
219 PF12325 TMF_TATA_bd: TATA ele 79.0 76 0.0016 33.8 15.2 34 403-436 20-53 (120)
220 PF06008 Laminin_I: Laminin Do 78.4 1.6E+02 0.0034 35.2 33.0 26 523-548 144-169 (264)
221 KOG0982|consensus 78.3 2E+02 0.0043 36.4 31.3 145 478-624 245-389 (502)
222 KOG1899|consensus 77.2 2.1E+02 0.0045 37.8 20.5 158 872-1093 106-264 (861)
223 TIGR03017 EpsF chain length de 77.1 2.2E+02 0.0048 36.3 25.2 40 392-431 164-203 (444)
224 KOG0249|consensus 77.0 2.7E+02 0.006 37.4 26.5 37 793-829 203-239 (916)
225 PRK15422 septal ring assembly 76.6 28 0.00061 34.1 10.2 70 458-527 7-76 (79)
226 PF04012 PspA_IM30: PspA/IM30 76.1 1.6E+02 0.0034 34.1 23.4 114 392-508 30-144 (221)
227 PF10168 Nup88: Nuclear pore c 75.7 1.7E+02 0.0036 40.2 20.8 17 857-873 559-575 (717)
228 PRK11281 hypothetical protein; 75.6 3.9E+02 0.0085 38.5 43.4 152 392-543 73-252 (1113)
229 COG1842 PspA Phage shock prote 74.8 1.8E+02 0.0038 34.3 18.2 43 570-612 27-69 (225)
230 PF04012 PspA_IM30: PspA/IM30 74.3 1.7E+02 0.0038 33.8 21.3 74 1342-1415 72-146 (221)
231 PF12795 MscS_porin: Mechanose 74.2 1.9E+02 0.0041 34.1 23.8 135 446-585 83-217 (240)
232 KOG0249|consensus 72.9 3.1E+02 0.0067 36.9 20.8 46 644-689 209-257 (916)
233 COG4026 Uncharacterized protei 72.5 35 0.00076 39.2 11.2 71 436-506 130-200 (290)
234 PF08826 DMPK_coil: DMPK coile 71.0 29 0.00063 32.6 8.5 51 1519-1576 2-52 (61)
235 PF04582 Reo_sigmaC: Reovirus 70.1 7.6 0.00016 47.3 6.0 118 531-648 27-151 (326)
236 PRK10884 SH3 domain-containing 69.9 64 0.0014 37.4 13.0 74 594-670 92-165 (206)
237 KOG2129|consensus 69.8 3.1E+02 0.0066 34.7 29.1 26 650-675 252-277 (552)
238 KOG0993|consensus 69.3 3.1E+02 0.0067 34.6 43.3 89 594-685 291-379 (542)
239 PF10498 IFT57: Intra-flagella 69.1 1.9E+02 0.0041 36.4 17.8 12 819-830 197-208 (359)
240 COG2433 Uncharacterized conser 68.3 81 0.0018 41.4 14.5 19 207-228 87-105 (652)
241 COG3074 Uncharacterized protei 68.2 58 0.0013 31.2 9.8 68 459-526 8-75 (79)
242 PF10186 Atg14: UV radiation r 67.1 2.8E+02 0.006 33.1 20.1 9 1158-1166 209-217 (302)
243 PF10212 TTKRSYEDQ: Predicted 66.4 4.1E+02 0.0089 34.9 23.2 154 532-688 288-499 (518)
244 COG2433 Uncharacterized conser 66.0 99 0.0021 40.7 14.6 35 418-452 427-461 (652)
245 KOG4677|consensus 65.0 3.9E+02 0.0085 34.2 31.5 97 585-684 306-402 (554)
246 PF06637 PV-1: PV-1 protein (P 64.5 3.7E+02 0.0081 33.7 36.4 60 517-576 57-116 (442)
247 KOG1899|consensus 64.2 4.7E+02 0.01 34.8 21.5 20 465-484 107-126 (861)
248 TIGR02894 DNA_bind_RsfA transc 64.1 73 0.0016 35.4 11.3 57 456-512 98-154 (161)
249 PF11932 DUF3450: Protein of u 63.5 1.9E+02 0.0042 34.2 15.9 60 439-498 54-113 (251)
250 PRK10884 SH3 domain-containing 63.2 87 0.0019 36.3 12.4 25 804-828 91-115 (206)
251 PF13166 AAA_13: AAA domain 62.1 5.5E+02 0.012 34.9 25.2 103 557-661 367-469 (712)
252 PRK11519 tyrosine kinase; Prov 61.9 1.5E+02 0.0033 40.5 16.5 39 392-430 260-298 (719)
253 PF14197 Cep57_CLD_2: Centroso 61.5 69 0.0015 30.9 9.3 60 610-669 6-65 (69)
254 PRK10869 recombination and rep 61.1 5.3E+02 0.011 34.4 25.4 46 440-485 156-201 (553)
255 PF14197 Cep57_CLD_2: Centroso 60.7 87 0.0019 30.2 9.9 66 522-587 2-67 (69)
256 PF08647 BRE1: BRE1 E3 ubiquit 60.6 1.5E+02 0.0032 30.2 12.2 95 1281-1375 1-95 (96)
257 PF09738 DUF2051: Double stran 60.6 4E+02 0.0087 32.8 20.1 91 400-504 78-168 (302)
258 PF10498 IFT57: Intra-flagella 60.5 3.2E+02 0.0069 34.4 17.5 138 929-1071 216-353 (359)
259 PF07889 DUF1664: Protein of u 59.8 1.5E+02 0.0032 32.0 12.3 65 838-902 43-107 (126)
260 PF05266 DUF724: Protein of un 59.5 3.2E+02 0.007 31.4 16.5 55 470-524 125-179 (190)
261 PRK03947 prefoldin subunit alp 59.2 2.4E+02 0.0051 30.4 14.3 42 460-501 92-133 (140)
262 TIGR03017 EpsF chain length de 58.5 4.9E+02 0.011 33.2 22.7 44 562-605 256-299 (444)
263 KOG0239|consensus 58.4 6.4E+02 0.014 34.5 22.4 110 543-656 172-281 (670)
264 KOG1850|consensus 58.0 4.4E+02 0.0095 32.4 35.3 206 459-665 113-320 (391)
265 PRK09841 cryptic autophosphory 57.7 1.6E+02 0.0035 40.3 15.7 39 392-430 260-298 (726)
266 PF10205 KLRAQ: Predicted coil 57.5 99 0.0021 32.0 10.1 71 467-537 3-73 (102)
267 KOG4687|consensus 56.6 4.2E+02 0.0091 31.8 18.5 95 392-486 23-128 (389)
268 COG4026 Uncharacterized protei 56.3 92 0.002 36.0 10.6 61 477-537 143-203 (290)
269 PF11180 DUF2968: Protein of u 55.0 89 0.0019 35.7 10.3 89 1438-1526 99-187 (192)
270 PF06005 DUF904: Protein of un 54.7 1.6E+02 0.0034 28.7 10.6 54 867-920 8-61 (72)
271 PF03148 Tektin: Tektin family 54.2 5.6E+02 0.012 32.5 41.7 60 845-904 320-379 (384)
272 COG3074 Uncharacterized protei 54.0 1.9E+02 0.0041 27.9 10.4 69 591-659 7-75 (79)
273 KOG1937|consensus 53.5 6.1E+02 0.013 32.7 35.7 162 401-569 233-405 (521)
274 PF02994 Transposase_22: L1 tr 53.4 27 0.00058 43.8 6.7 21 521-541 147-167 (370)
275 PF14073 Cep57_CLD: Centrosome 53.1 4E+02 0.0086 30.4 22.4 41 515-555 61-101 (178)
276 PF15397 DUF4618: Domain of un 52.4 4.9E+02 0.011 31.4 30.3 104 513-619 8-112 (258)
277 KOG4514|consensus 52.4 4E+02 0.0087 30.3 15.7 47 1250-1308 104-150 (222)
278 PF04912 Dynamitin: Dynamitin 51.6 6.1E+02 0.013 32.1 19.9 50 1281-1330 92-144 (388)
279 PF15254 CCDC14: Coiled-coil d 51.2 8.3E+02 0.018 33.6 27.4 254 270-593 298-555 (861)
280 PRK10361 DNA recombination pro 50.7 7.1E+02 0.015 32.6 24.0 25 1130-1154 387-411 (475)
281 PF05384 DegS: Sensor protein 49.7 4.2E+02 0.0091 29.7 21.6 58 438-495 17-74 (159)
282 PLN02939 transferase, transfer 49.3 1E+03 0.022 34.0 29.8 109 517-629 225-344 (977)
283 KOG0288|consensus 49.2 5.8E+02 0.013 32.5 16.6 76 465-540 30-105 (459)
284 PF15556 Zwint: ZW10 interacto 49.1 3.6E+02 0.0078 31.1 13.6 100 1295-1414 75-174 (252)
285 PF03148 Tektin: Tektin family 49.0 6.7E+02 0.014 31.9 39.7 101 605-706 247-360 (384)
286 PF05266 DUF724: Protein of un 49.0 4.7E+02 0.01 30.1 15.1 25 434-458 79-103 (190)
287 PRK03947 prefoldin subunit alp 49.0 3.7E+02 0.008 28.9 14.2 40 588-627 94-133 (140)
288 PF06005 DUF904: Protein of un 48.9 2.5E+02 0.0054 27.4 10.9 31 459-489 8-38 (72)
289 PF02841 GBP_C: Guanylate-bind 48.8 5.7E+02 0.012 31.1 16.9 52 725-776 245-297 (297)
290 PF12777 MT: Microtubule-bindi 48.4 67 0.0015 39.9 9.1 92 453-544 219-310 (344)
291 PF11365 DUF3166: Protein of u 47.4 78 0.0017 32.4 7.6 80 1585-1671 2-89 (96)
292 PF08581 Tup_N: Tup N-terminal 46.8 3.1E+02 0.0066 27.3 12.0 68 444-514 7-74 (79)
293 PF10234 Cluap1: Clusterin-ass 46.6 6.1E+02 0.013 30.8 18.2 69 480-548 173-241 (267)
294 KOG1962|consensus 46.4 1.9E+02 0.0042 33.7 11.5 26 464-489 181-206 (216)
295 KOG0239|consensus 46.0 9.6E+02 0.021 32.8 21.0 25 398-422 99-123 (670)
296 PF10157 DUF2365: Uncharacteri 45.9 4.6E+02 0.01 29.1 16.6 44 1258-1312 38-81 (149)
297 PF08172 CASP_C: CASP C termin 45.8 3.3E+02 0.0071 32.6 13.7 53 392-444 79-131 (248)
298 TIGR01010 BexC_CtrB_KpsE polys 45.8 4.1E+02 0.009 33.1 15.5 24 413-436 170-193 (362)
299 PRK10869 recombination and rep 44.8 9.1E+02 0.02 32.2 28.3 36 439-474 162-197 (553)
300 PF15254 CCDC14: Coiled-coil d 44.2 1E+03 0.023 32.7 25.7 27 478-504 389-415 (861)
301 TIGR02977 phageshock_pspA phag 44.2 5.8E+02 0.013 29.8 24.1 55 456-510 93-147 (219)
302 KOG3850|consensus 43.3 7.9E+02 0.017 31.1 17.8 164 1186-1424 190-368 (455)
303 PF08581 Tup_N: Tup N-terminal 42.4 3.6E+02 0.0077 26.9 11.0 56 403-458 1-56 (79)
304 PF09738 DUF2051: Double stran 42.3 4E+02 0.0087 32.8 14.0 75 555-629 86-160 (302)
305 cd00632 Prefoldin_beta Prefold 41.6 3.9E+02 0.0085 27.4 12.0 34 594-627 69-102 (105)
306 PF14992 TMCO5: TMCO5 family 41.4 7.4E+02 0.016 30.2 19.2 68 594-661 24-94 (280)
307 PRK00846 hypothetical protein; 41.4 89 0.0019 30.8 6.7 55 1452-1506 7-61 (77)
308 PF03962 Mnd1: Mnd1 family; I 41.2 4.4E+02 0.0096 30.2 13.4 27 526-552 136-162 (188)
309 PRK15422 septal ring assembly 41.0 3.2E+02 0.0069 27.2 10.2 56 587-642 17-72 (79)
310 COG4477 EzrA Negative regulato 40.9 1E+03 0.022 31.6 44.3 134 533-666 275-411 (570)
311 PF12329 TMF_DNA_bd: TATA elem 40.9 3E+02 0.0066 26.8 10.3 58 567-624 12-69 (74)
312 PF04822 Takusan: Takusan; In 40.8 1.1E+02 0.0024 30.7 7.3 36 1268-1303 10-46 (84)
313 PRK09510 tolA cell envelope in 40.4 4.7E+02 0.01 33.3 14.5 71 1267-1340 53-123 (387)
314 TIGR02449 conserved hypothetic 40.2 2.1E+02 0.0046 27.5 8.7 62 464-525 2-63 (65)
315 PF13747 DUF4164: Domain of un 39.6 3.2E+02 0.007 27.6 10.6 54 1112-1165 35-88 (89)
316 PF03915 AIP3: Actin interacti 39.6 9.6E+02 0.021 31.0 17.6 117 565-684 204-321 (424)
317 PF14992 TMCO5: TMCO5 family 38.6 8.2E+02 0.018 29.9 17.7 38 842-879 4-41 (280)
318 PF08647 BRE1: BRE1 E3 ubiquit 38.5 4.5E+02 0.0097 26.8 13.3 47 598-644 20-66 (96)
319 PRK11519 tyrosine kinase; Prov 38.4 9.5E+02 0.02 33.1 18.3 26 520-545 269-294 (719)
320 KOG2077|consensus 38.1 8.2E+02 0.018 32.4 15.8 49 439-487 299-347 (832)
321 PF03962 Mnd1: Mnd1 family; I 38.1 3E+02 0.0066 31.5 11.5 46 762-823 82-127 (188)
322 PF07106 TBPIP: Tat binding pr 37.6 2.9E+02 0.0063 30.7 11.1 64 595-658 72-137 (169)
323 KOG2129|consensus 37.1 1E+03 0.022 30.5 28.4 59 749-815 151-213 (552)
324 PRK04325 hypothetical protein; 36.9 90 0.002 30.4 6.0 52 1454-1505 5-56 (74)
325 PRK10698 phage shock protein P 36.6 7.6E+02 0.017 29.0 23.3 55 457-511 94-148 (222)
326 COG4477 EzrA Negative regulato 36.2 1.2E+03 0.025 31.0 48.6 338 535-935 93-433 (570)
327 PF15035 Rootletin: Ciliary ro 36.1 7.1E+02 0.015 28.5 19.0 33 1051-1086 146-178 (182)
328 TIGR01010 BexC_CtrB_KpsE polys 36.0 9.5E+02 0.021 29.9 16.6 35 517-551 169-203 (362)
329 KOG0288|consensus 35.8 1.1E+03 0.023 30.4 17.6 109 435-543 14-122 (459)
330 PF08702 Fib_alpha: Fibrinogen 35.7 6.4E+02 0.014 27.8 13.8 112 1277-1410 22-133 (146)
331 PF13166 AAA_13: AAA domain 35.5 1.3E+03 0.028 31.4 27.1 14 1268-1281 697-710 (712)
332 PF10805 DUF2730: Protein of u 35.1 1.3E+02 0.0028 31.2 7.3 55 1445-1499 36-92 (106)
333 PF10805 DUF2730: Protein of u 34.9 1E+02 0.0022 32.1 6.4 62 1401-1462 34-97 (106)
334 PF05278 PEARLI-4: Arabidopsis 34.6 7.2E+02 0.016 30.2 14.0 24 432-455 157-180 (269)
335 PRK02119 hypothetical protein; 34.5 1.1E+02 0.0024 29.7 6.3 51 1455-1505 6-56 (73)
336 KOG1937|consensus 34.5 1.1E+03 0.025 30.4 36.5 24 758-781 490-513 (521)
337 PF14817 HAUS5: HAUS augmin-li 34.2 1.4E+03 0.03 31.2 29.8 34 1276-1309 311-344 (632)
338 PF15233 SYCE1: Synaptonemal c 34.2 6.4E+02 0.014 27.4 13.3 55 452-506 24-78 (134)
339 PRK04406 hypothetical protein; 34.1 1.2E+02 0.0025 29.8 6.3 51 1454-1504 7-57 (75)
340 PF05335 DUF745: Protein of un 34.1 7.8E+02 0.017 28.4 18.7 31 511-541 144-174 (188)
341 PRK09841 cryptic autophosphory 33.9 9.3E+02 0.02 33.2 17.2 31 518-548 267-297 (726)
342 KOG2991|consensus 33.9 9E+02 0.02 29.0 28.1 98 527-626 179-302 (330)
343 PHA03190 UL14 tegument protein 33.8 2.6E+02 0.0057 31.9 9.6 57 334-390 113-190 (196)
344 KOG2751|consensus 33.5 8.8E+02 0.019 31.2 15.0 25 432-456 148-172 (447)
345 KOG4807|consensus 33.2 1.1E+03 0.024 29.8 30.3 59 594-652 420-478 (593)
346 KOG2196|consensus 33.0 9.2E+02 0.02 28.8 20.0 164 464-650 73-246 (254)
347 TIGR00618 sbcc exonuclease Sbc 32.7 1.7E+03 0.038 32.0 90.0 12 1267-1278 989-1000(1042)
348 PF02403 Seryl_tRNA_N: Seryl-t 32.5 3.2E+02 0.007 27.9 9.8 57 444-500 39-98 (108)
349 PRK08476 F0F1 ATP synthase sub 31.8 7E+02 0.015 27.1 16.6 43 731-773 93-135 (141)
350 PF15358 TSKS: Testis-specific 31.8 1.2E+03 0.026 29.8 23.5 215 281-496 143-381 (558)
351 PRK10361 DNA recombination pro 31.3 1.3E+03 0.029 30.2 25.3 11 651-661 147-157 (475)
352 KOG4302|consensus 31.2 1.5E+03 0.033 30.9 32.8 312 443-776 20-381 (660)
353 KOG2264|consensus 31.1 3.1E+02 0.0067 35.8 10.7 50 453-502 91-140 (907)
354 KOG4403|consensus 31.0 1.1E+03 0.024 30.2 15.1 34 515-550 294-327 (575)
355 PF06120 Phage_HK97_TLTM: Tail 31.0 1.1E+03 0.024 29.1 19.7 37 557-593 71-107 (301)
356 PF15290 Syntaphilin: Golgi-lo 30.5 1.1E+03 0.023 28.9 15.5 75 531-605 74-148 (305)
357 PF05103 DivIVA: DivIVA protei 30.4 29 0.00062 36.5 1.8 47 1269-1315 18-64 (131)
358 KOG3838|consensus 29.9 9.2E+02 0.02 30.7 14.0 72 172-247 273-352 (497)
359 COG1382 GimC Prefoldin, chaper 29.6 7.3E+02 0.016 26.6 14.2 40 529-568 10-49 (119)
360 PF13863 DUF4200: Domain of un 29.5 6.8E+02 0.015 26.2 15.1 17 813-829 7-23 (126)
361 smart00502 BBC B-Box C-termina 29.0 6.3E+02 0.014 25.7 15.7 48 520-567 52-100 (127)
362 PF02050 FliJ: Flagellar FliJ 28.8 6.1E+02 0.013 25.4 16.4 53 504-556 45-97 (123)
363 smart00806 AIP3 Actin interact 28.5 1.4E+03 0.03 29.5 24.6 40 530-573 284-323 (426)
364 PRK02793 phi X174 lysis protei 28.3 1.5E+02 0.0033 28.7 6.0 49 1456-1504 6-54 (72)
365 TIGR02231 conserved hypothetic 28.3 5.2E+02 0.011 34.0 12.9 33 519-551 72-104 (525)
366 KOG2751|consensus 28.1 1.3E+03 0.029 29.7 15.3 11 396-406 114-124 (447)
367 COG1382 GimC Prefoldin, chaper 28.1 7.8E+02 0.017 26.5 13.3 36 598-633 9-44 (119)
368 PF07106 TBPIP: Tat binding pr 28.1 1.7E+02 0.0038 32.5 7.4 64 1270-1345 73-136 (169)
369 KOG0243|consensus 28.0 2E+03 0.044 31.3 55.4 448 405-872 433-918 (1041)
370 KOG0992|consensus 28.0 1.5E+03 0.033 29.8 51.3 211 425-661 113-332 (613)
371 PRK02793 phi X174 lysis protei 27.9 2.9E+02 0.0063 26.9 7.8 52 1559-1610 4-55 (72)
372 PF08826 DMPK_coil: DMPK coile 27.7 5.4E+02 0.012 24.5 9.3 23 518-540 32-54 (61)
373 PF05276 SH3BP5: SH3 domain-bi 27.5 1.1E+03 0.024 28.1 27.4 186 818-1014 9-221 (239)
374 COG4985 ABC-type phosphate tra 27.5 5.6E+02 0.012 30.2 11.1 83 571-661 161-245 (289)
375 KOG1760|consensus 27.4 7.9E+02 0.017 26.5 11.2 68 562-629 25-115 (131)
376 PF03915 AIP3: Actin interacti 27.4 1.5E+03 0.032 29.4 19.4 85 465-551 216-301 (424)
377 PF10234 Cluap1: Clusterin-ass 26.9 1.2E+03 0.026 28.3 18.9 129 399-527 117-255 (267)
378 PF06156 DUF972: Protein of un 26.9 2E+02 0.0044 30.0 7.0 50 1437-1486 8-57 (107)
379 PRK00295 hypothetical protein; 26.7 1.6E+02 0.0035 28.2 5.8 52 1455-1506 2-53 (68)
380 TIGR03752 conj_TIGR03752 integ 26.1 6.1E+02 0.013 33.0 12.2 32 399-430 59-90 (472)
381 PF12761 End3: Actin cytoskele 26.0 5.9E+02 0.013 29.5 11.0 29 396-424 93-121 (195)
382 PF04201 TPD52: Tumour protein 26.0 1.6E+02 0.0035 32.9 6.4 59 1656-1722 27-91 (162)
383 PF06810 Phage_GP20: Phage min 25.9 5.8E+02 0.013 28.4 10.8 54 440-493 12-68 (155)
384 PRK14127 cell division protein 25.6 1.7E+02 0.0037 30.8 6.1 48 1268-1315 22-69 (109)
385 PF15456 Uds1: Up-regulated Du 25.5 6.9E+02 0.015 26.9 10.8 36 884-920 22-57 (124)
386 PF08172 CASP_C: CASP C termin 25.3 7.9E+02 0.017 29.5 12.4 59 469-527 79-137 (248)
387 PRK00846 hypothetical protein; 25.3 4.5E+02 0.0097 26.1 8.5 56 544-599 4-59 (77)
388 PF01920 Prefoldin_2: Prefoldi 25.2 7E+02 0.015 25.0 11.4 85 416-500 1-100 (106)
389 PF07798 DUF1640: Protein of u 24.9 1E+03 0.022 26.8 20.4 134 486-625 19-154 (177)
390 PRK00736 hypothetical protein; 24.8 1.7E+02 0.0038 28.0 5.7 48 1457-1504 4-51 (68)
391 PF02403 Seryl_tRNA_N: Seryl-t 24.8 4.1E+02 0.0089 27.2 8.9 74 528-605 25-98 (108)
392 PF12329 TMF_DNA_bd: TATA elem 24.7 6.7E+02 0.014 24.5 10.5 55 609-663 12-66 (74)
393 PRK09343 prefoldin subunit bet 24.5 8.7E+02 0.019 25.8 14.2 17 538-554 20-36 (121)
394 PF05791 Bacillus_HBL: Bacillu 24.5 7.7E+02 0.017 28.0 11.8 57 837-893 123-179 (184)
395 COG3206 GumC Uncharacterized p 24.2 1.6E+03 0.035 28.9 24.9 19 657-675 372-390 (458)
396 PRK06568 F0F1 ATP synthase sub 24.2 1E+03 0.022 26.5 13.2 68 763-836 45-112 (154)
397 PF13863 DUF4200: Domain of un 24.2 8.4E+02 0.018 25.5 16.6 73 517-589 31-103 (126)
398 PF02841 GBP_C: Guanylate-bind 24.1 1.4E+03 0.029 27.9 17.9 15 519-533 116-130 (297)
399 KOG4677|consensus 23.7 1.7E+03 0.037 28.9 29.9 91 475-566 258-350 (554)
400 PF11180 DUF2968: Protein of u 23.5 1.2E+03 0.026 27.0 15.6 96 530-639 89-184 (192)
401 TIGR03076 near_not_gcvH Chlamy 23.5 74 0.0016 40.8 3.7 84 132-233 225-311 (686)
402 TIGR03752 conj_TIGR03752 integ 23.4 6.1E+02 0.013 33.1 11.5 35 996-1030 64-98 (472)
403 PRK13169 DNA replication intia 23.3 1.9E+02 0.0041 30.5 6.0 49 1437-1485 8-56 (110)
404 PF10205 KLRAQ: Predicted coil 23.0 8.9E+02 0.019 25.4 10.9 69 474-542 3-71 (102)
405 PRK12704 phosphodiesterase; Pr 23.0 1.9E+03 0.041 29.2 23.6 11 1278-1288 438-448 (520)
406 PF04899 MbeD_MobD: MbeD/MobD 22.9 7.2E+02 0.016 24.3 9.8 42 440-481 27-68 (70)
407 TIGR00618 sbcc exonuclease Sbc 22.6 2.5E+03 0.054 30.4 90.4 62 531-593 436-498 (1042)
408 PF04728 LPP: Lipoprotein leuc 22.5 5.8E+02 0.013 24.0 8.1 44 627-670 7-50 (56)
409 PF05335 DUF745: Protein of un 22.5 1.2E+03 0.027 26.8 18.0 111 396-506 57-167 (188)
410 TIGR02449 conserved hypothetic 22.4 7.1E+02 0.015 24.0 9.0 50 590-639 9-58 (65)
411 KOG2391|consensus 22.4 1.4E+03 0.03 28.7 13.7 47 835-881 232-278 (365)
412 PRK04406 hypothetical protein; 22.4 4.4E+02 0.0096 25.9 8.0 38 550-587 8-45 (75)
413 PRK00736 hypothetical protein; 22.2 3.9E+02 0.0085 25.7 7.5 51 1560-1610 2-52 (68)
414 PF08232 Striatin: Striatin fa 22.2 6E+02 0.013 27.6 9.8 61 446-506 9-69 (134)
415 PF05008 V-SNARE: Vesicle tran 22.0 2.5E+02 0.0054 27.1 6.3 50 1356-1405 28-78 (79)
416 PF06120 Phage_HK97_TLTM: Tail 21.7 1.6E+03 0.034 27.8 19.9 39 465-503 70-108 (301)
417 PLN03229 acetyl-coenzyme A car 21.5 2.3E+03 0.05 29.6 21.1 32 169-200 124-155 (762)
418 PF13094 CENP-Q: CENP-Q, a CEN 21.3 1.1E+03 0.024 25.9 12.3 53 453-505 32-84 (160)
419 PF05529 Bap31: B-cell recepto 21.3 5.2E+02 0.011 29.3 9.7 45 789-833 90-145 (192)
420 PRK15178 Vi polysaccharide exp 21.2 1.9E+03 0.041 28.6 16.0 23 541-563 244-266 (434)
421 COG4985 ABC-type phosphate tra 21.1 1.1E+03 0.023 28.1 11.7 61 869-929 185-245 (289)
422 PF11068 YlqD: YlqD protein; 21.0 7.2E+02 0.016 27.0 10.0 64 626-689 23-87 (131)
423 PF04102 SlyX: SlyX; InterPro 20.9 4.1E+02 0.0088 25.5 7.3 50 855-904 3-52 (69)
424 PRK02119 hypothetical protein; 20.8 4.8E+02 0.01 25.5 7.9 36 551-586 7-42 (73)
425 PF11570 E2R135: Coiled-coil r 20.7 1.1E+03 0.024 25.7 12.3 53 503-555 76-128 (136)
426 cd00632 Prefoldin_beta Prefold 20.6 9.3E+02 0.02 24.7 13.5 27 398-424 5-31 (105)
427 KOG2077|consensus 20.6 2.1E+03 0.046 28.9 15.1 40 839-878 298-337 (832)
428 PF02050 FliJ: Flagellar FliJ 20.4 8.7E+02 0.019 24.3 16.5 18 636-653 72-89 (123)
429 PF02183 HALZ: Homeobox associ 20.1 2.4E+02 0.0052 25.1 5.1 41 1051-1091 3-43 (45)
No 1
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=100.00 E-value=6.7e-53 Score=457.97 Aligned_cols=182 Identities=47% Similarity=0.831 Sum_probs=167.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhHHHHHhhhhHHHhhhcCCCCCCCCCCCCCCCCCCchhhhhHhHHHhhhhhhhhHHH
Q psy11582 54 RKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELEREAPSTSSYLGPLPSTPLPSALDAAQAHLREMREERIQDLNT 133 (1760)
Q Consensus 54 krkl~a~~e~Qq~qA~Lv~~LQaKVlqYr~rc~elE~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~e~~~dle~ 133 (1760)
|+||+||++||++||+||++||+||+|||+||++||+++.+.+... +|.+. +....++++||+.
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~-------~~~~~---------~~~~~e~s~dLe~ 64 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLE-------SPSQR---------RRSEEEHSPDLEE 64 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC-------ccccc---------ccccccCcccHHH
Confidence 6899999999999999999999999999999999999996552221 11111 1123567899999
Q ss_pred HHHhhHHHHHhhHhHHHhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy11582 134 ALRRLDDERRENEKLRKMNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYYSSEHARLL 213 (1760)
Q Consensus 134 aL~rLEeEqqR~e~L~qvN~~LReQLeqa~~~N~aL~~dl~klt~dw~~~r~EL~~KE~~wr~ee~~f~~Y~~~Eh~rlL 213 (1760)
+|+|||||++||++|++||+|||+|||+++.+|++|++||+|||+||.++++||+.||..|++|+++|++||++||+|||
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll 144 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLL 144 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhHhhHhhHHHhHHHHHHHhhHH
Q psy11582 214 ALWRDVVDIKRSFTAMQSATEQDLSKIRSDLNQSTRQM 251 (1760)
Q Consensus 214 ~LWRevv~~Rr~f~E~ksaTeRdL~~~r~E~~r~sr~l 251 (1760)
.|||+||+|||+|+|||++|||||++||+||+|++|+|
T Consensus 145 ~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~~r~~ 182 (182)
T PF15035_consen 145 SLWREVVALRRQFAELRTATERDLSDMRAEFARTSRSV 182 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999975
No 2
>KOG0161|consensus
Probab=99.97 E-value=2.2e-18 Score=233.89 Aligned_cols=916 Identities=19% Similarity=0.234 Sum_probs=449.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQL-------AQVGREKEALVKNIEMLRVEKSALEKNK 464 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l-------~~a~~E~~~l~~~le~L~~Ek~~Le~~r 464 (1760)
.++..-.+.+..++..+...+..+..++....++..+...+..++ .++.-...++......+..+...+...+
T Consensus 838 e~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~ 917 (1930)
T KOG0161|consen 838 EEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERL 917 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888889999999999999999888888766666666665 2333344444444455555555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 465 REINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNA 544 (1760)
Q Consensus 465 ~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~ 544 (1760)
...+.+...++....+++..+.++...++..+..+..+..+.......+.-+...+.++++.++.|-.+--.+.+++..+
T Consensus 918 e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l 997 (1930)
T KOG0161|consen 918 EEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIREL 997 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666666666666666666666666666666666677777777777777777776777777777
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11582 545 KLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAI 624 (1760)
Q Consensus 545 ~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~ 624 (1760)
...+...+.+...+.....+++..+.+++..+++-+....++....-|+.-++..+...+..+..+...+..+....+..
T Consensus 998 ~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~E 1077 (1930)
T KOG0161|consen 998 QDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESE 1077 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777666666655555555555555555554445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy11582 625 LFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNE 704 (1760)
Q Consensus 625 Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~ 704 (1760)
|..++..+......+.++.+.+.++...+..+..+++-- .+..+++...+..|...+....-+....+ ..+...
T Consensus 1078 l~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e----r~~r~K~ek~r~dL~~ele~l~~~Lee~~--~~t~~q 1151 (1930)
T KOG0161|consen 1078 LSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE----RASRAKAERQRRDLSEELEELKEELEEQG--GTTAAQ 1151 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 555554444444445555555544444444444443311 11222333333333333332222211110 011111
Q ss_pred HHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy11582 705 ECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALL 784 (1760)
Q Consensus 705 E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll 784 (1760)
.+ +.+....++.+|.+..+..... .+..+.++..++...+.+|..-+..+++.+-.
T Consensus 1152 ~e----------~~~k~e~e~~~l~~~leee~~~-----------~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~--- 1207 (1930)
T KOG0161|consen 1152 LE----------LNKKREAEVQKLRRDLEEETLD-----------HEAQIEELRKKHADSLAELQEQLEQLQKDKAK--- 1207 (1930)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 11 1111122244444333333222 22222233333333333333333333332222
Q ss_pred hhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHhhccHHhHHHHHHHHHHHHHHH
Q psy11582 785 RAEGDKQQ----------ALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKR---ESAGRSEQDRNTINTLREQLNRTV 851 (1760)
Q Consensus 785 ~aE~ekqQ----------aL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rr---ea~~~~e~er~~i~~l~eEL~~~~ 851 (1760)
.+.+|+. .+......+..+.-+.-.+...|.+++..++.+.+ +... -...++.++..+-
T Consensus 1208 -lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~-------q~~~l~~E~~~l~ 1279 (1930)
T KOG0161|consen 1208 -LEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTA-------KRSRLQNENEELS 1279 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHh
Confidence 1111111 00001111111111112222333333333333222 2211 1122222222222
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 852 AKL---EELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDL 928 (1760)
Q Consensus 852 ~~l---eea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL 928 (1760)
.++ +..+..+......+..+++.++.++..-.+....+...+ .++..+...+...+.+..+....+.+.+
T Consensus 1280 ~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l-------~~l~~e~~~l~e~leee~e~~~~l~r~l 1352 (1930)
T KOG0161|consen 1280 RQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENAL-------RQLEHELDLLREQLEEEQEAKNELERKL 1352 (1930)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 223333334444444444444444444444444444443 3333444444444444444444444444
Q ss_pred HHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh----h-hHHHHHHHHHHHHHHHHHHHH
Q psy11582 929 LDTKTHLADSNFEKDKYAKS-NKDLREMVKKVESEKRDQARTIDEGLQKIAVR----F-GDDEKQALRNQLNDQSNDVAS 1002 (1760)
Q Consensus 929 ~elrr~Ladle~Eke~lq~s-l~ELre~Lkk~Ese~~eler~iEe~~qkl~~L----~-l~qE~aeLrnqLrelE~e~~e 1002 (1760)
..+.....+-....+..... ..++.+..+++..........++.+......| . +.++...+...+.........
T Consensus 1353 sk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~ 1432 (1930)
T KOG0161|consen 1353 SKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAA 1432 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44433333333333333222 33333333333333344444444444444222 1 233333333333333333333
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHH
Q psy11582 1003 LKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVED 1082 (1760)
Q Consensus 1003 lr~eLqeLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~l~r~~~~~~~E 1082 (1760)
+.......+.-..+.......+...+...+.+-.. ...+++.+.....++.+++++ ++.+
T Consensus 1433 le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~-------------~~tel~kl~~~lee~~e~~e~-------l~re 1492 (1930)
T KOG0161|consen 1433 LEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQ-------------LSTELQKLKNALEELLEQLEE-------LRRE 1492 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 33333333333333333333333333331111111 455555555555555555555 6666
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHhhhhHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhHHHHH
Q psy11582 1083 LARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRR 1162 (1760)
Q Consensus 1083 L~~lr~kl~~~~e~~r~~~r~lee~~Ke~~~L~v~L~~l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s~Lrr 1162 (1760)
...+..++..-.......++++.++-|.++.+++...+|+..|..++.-+++.|..-.+++.. ++.+.|-.-|
T Consensus 1493 nk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~-------~~~~r~e~er 1565 (1930)
T KOG0161|consen 1493 NKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLE-------LQQLRSEIER 1565 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-------HHHHHHHHHH
Confidence 666666666666666667777777777777777777777777777776655555444333322 3333333333
Q ss_pred HHhhhccccccCChHHHHHHH-HH-hhhhhccccccCCCCCCchhhhhHHhhhHHHHHHHHhhhhhhhhhhhccccCCCC
Q psy11582 1163 IAALRYHAFYTLSEKEAELAR-IR-AQYDAYKSMDCHTDRSSDLERYRAAQLHAESLLEAREKSHRQQVNRLENQLDGRA 1240 (1760)
Q Consensus 1163 ~lg~~~~~~~~~sp~~~~~~~-~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~le~~~~~~~~~~~r~~~~~~~~~ 1240 (1760)
.+.-.. -+++..| -+ ...+.+.+.+ |. |+|.+ +.. -|++.-..|..
T Consensus 1566 ~l~ek~--------Ee~E~~rk~~~~~i~~~q~~L-------------e~--------E~r~k--~e~-~r~KKkle~di 1613 (1930)
T KOG0161|consen 1566 RLQEKD--------EEIEELRKNLQRQLESLQAEL-------------EA--------ETRSK--SEA-LRSKKKLEGDI 1613 (1930)
T ss_pred HHHhhh--------HHHHHHHHHHHHHHHHHHHhh-------------hH--------HHHHH--HHH-Hhhhhhhhcch
Confidence 333211 1112222 00 1222222111 00 11110 000 00000000111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy11582 1241 SHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKM 1320 (1760)
Q Consensus 1241 ~~~~~~~~sp~r~~sp~~~~~~~~~~~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~ 1320 (1760)
++....+. . +.- =...+.+.++.+...+.+++++.||.+.+...+.-++..++....-.++-+
T Consensus 1614 ~elE~~ld-~------------ank----~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ 1676 (1930)
T KOG0161|consen 1614 NELEIQLD-H------------ANK----ANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAEL 1676 (1930)
T ss_pred HHHHHHHH-H------------HHH----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000 0 000 002334445555555555555555555555555555555555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhh
Q psy11582 1321 AQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARL 1400 (1760)
Q Consensus 1321 ~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l 1400 (1760)
.+|...+..++-.|+.+|..+.-+...+..=--..--.-.+.+-|-.+|+.|+-.+.-...+.+...|+.+|..+..+++
T Consensus 1677 eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~ 1756 (1930)
T KOG0161|consen 1677 EELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKL 1756 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66777777777777777777766665555544444455667778888889999899888889999999999988888888
Q ss_pred HHHHHHhHHHhhhhhhhhhhhhhhhccc
Q psy11582 1401 DAEKRALQDELSRTEARVTKLELQRVAL 1428 (1760)
Q Consensus 1401 ~~e~r~L~e~l~~~E~r~~~lel~rr~l 1428 (1760)
-.|.+.=++..-..|.-...||....+|
T Consensus 1757 ~~el~~Eq~~~~~le~~k~~LE~~~kdL 1784 (1930)
T KOG0161|consen 1757 AEELRKEQETSQKLERLKKSLERQVKDL 1784 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776555555555555544433
No 3
>KOG0161|consensus
Probab=99.96 E-value=3e-16 Score=213.57 Aligned_cols=1041 Identities=19% Similarity=0.245 Sum_probs=544.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 397 HREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNS 476 (1760)
Q Consensus 397 tqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~ 476 (1760)
..+.+......+...+..+...+.....+......+.....++.-++..-+............+...+..++..+..+..
T Consensus 836 ~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~ 915 (1930)
T KOG0161|consen 836 TEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKE 915 (1930)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555556666666777777777777766666777777777888888899999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 477 NLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKE 556 (1760)
Q Consensus 477 e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~ 556 (1760)
.++.....+..++++...++++..++...++.....+...+.....++.+++.|.+++....+.+..+..++..++....
T Consensus 916 ~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~ 995 (1930)
T KOG0161|consen 916 RLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIR 995 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHH
Q psy11582 557 EMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDK-------ESLEAILFDTQ 629 (1760)
Q Consensus 557 el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseK-------esLEs~Lfe~Q 629 (1760)
++...+...+.....|.....++-+..+++...+.+.....-.+++....+.-++..+.... +.|...|-...
T Consensus 996 ~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke 1075 (1930)
T KOG0161|consen 996 ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKE 1075 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998886666666655555554444444433 33333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHhhh
Q psy11582 630 SHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTK 709 (1760)
Q Consensus 630 q~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~~~~ 709 (1760)
..+.++..+.+.....+..+...+..++..+..+..+++.+.+.. +.++.. ...-..+
T Consensus 1076 ~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r-----------~K~ek~--------r~dL~~e--- 1133 (1930)
T KOG0161|consen 1076 SELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR-----------AKAERQ--------RRDLSEE--- 1133 (1930)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--------HHHHHHH---
Confidence 333333333333333333333333333333333333333333322 222221 1111222
Q ss_pred hhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy11582 710 LTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVK------QITEEKDCELSRLQANLCQLQSHIDKICQQHEDAL 783 (1760)
Q Consensus 710 ~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~------~l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~l 783 (1760)
+.-|..+ |+.....+.. ..+.+...+.+.++.+.-.....+..+.+.|..++
T Consensus 1134 ---------------le~l~~~-------Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~ 1191 (1930)
T KOG0161|consen 1134 ---------------LEELKEE-------LEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSL 1191 (1930)
T ss_pred ---------------HHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222222 2222111111 12334445555555555666666777777776665
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 784 LRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEE 863 (1760)
Q Consensus 784 l~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~i~~l~eEL~~~~~~leea~~~lq~ 863 (1760)
-.......+ ....+..|.-.-..++.+..+...+++.+-.+.....-.. ..+...+.+++.++.+....
T Consensus 1192 ~el~~qle~----l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~----k~~E~~l~elq~k~~~~~~~--- 1260 (1930)
T KOG0161|consen 1192 AELQEQLEQ----LQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD----KKLEAQLSELQLKLDEQERL--- 1260 (1930)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH----HHHHHHHHHHHHHHHHHHHH---
Confidence 554443222 2222333333333444444555445444433321110000 12222333333333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy11582 864 EKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKD 943 (1760)
Q Consensus 864 El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~elrr~Ladle~Eke 943 (1760)
+..+-.+...++.++..+.+.++.....+.-+......+...++++++.+..-......+...+..+......+...++
T Consensus 1261 -~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~le 1339 (1930)
T KOG0161|consen 1261 -RNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLE 1339 (1930)
T ss_pred -HHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223333333333333334433333333333333333333333333333333333333333333333233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 944 KYAKSNKDLREMVKKVESEKR-----------DQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQ 1012 (1760)
Q Consensus 944 ~lq~sl~ELre~Lkk~Ese~~-----------eler~iEe~~qkl~~L~l~qE~aeLrnqLrelE~e~~elr~eLqeLeq 1012 (1760)
.-.....++.-.++++.++.. .....+++.+.++ ......+...+..+......+.+-...+.+
T Consensus 1340 ee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l-----~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~ 1414 (1930)
T KOG0161|consen 1340 EEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKL-----QQRLQELEEQIEAANAKNASLEKAKNRLQQ 1414 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333332222 2222233322222 333333444444444444444444444444
Q ss_pred HHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy11582 1013 IRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQ 1092 (1760)
Q Consensus 1013 E~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~lr~kl~~ 1092 (1760)
+...+..++.........++ .++.+...-+...++...++...+++-.+.......++.++...+..
T Consensus 1415 el~d~~~d~~~~~~~~~~le-------------~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1415 ELEDLQLDLERSRAAVAALE-------------KKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444444333333322 22233556666666666666666666444444444444444444443
Q ss_pred HHHHHHHhHHhhHHHHHhhhhHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHhhhccccc
Q psy11582 1093 SVEMNNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHAFY 1172 (1760)
Q Consensus 1093 ~~e~~r~~~r~lee~~Ke~~~L~v~L~~l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s~Lrr~lg~~~~~~~ 1172 (1760)
..+ .++.+.+++.++...+.+|...++.+..+++.|+..+...+..+.++..+|.-+-..|+-+-.... +.
T Consensus 1482 ~~e-------~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~l-r~- 1552 (1930)
T KOG0161|consen 1482 LLE-------QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKL-RL- 1552 (1930)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HH-
Confidence 322 555666677788888888888889999999999999999999988888888887776655444321 10
Q ss_pred cCChHHHHHHHHHhhhhhccccccCCCCCCchhhhhHHhhhHHHHHHHHhh----hhhhhhhhhccccCCCCCCCCCCCC
Q psy11582 1173 TLSEKEAELARIRAQYDAYKSMDCHTDRSSDLERYRAAQLHAESLLEAREK----SHRQQVNRLENQLDGRASHAGGKMT 1248 (1760)
Q Consensus 1173 ~~sp~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~le~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~ 1248 (1760)
..++..+.++.+...+. .....|..++ .+..+++.++. ..+..
T Consensus 1553 -----~~~~~~~r~e~er~l~e-------------------k~Ee~E~~rk~~~~~i~~~q~~Le~---------E~r~k 1599 (1930)
T KOG0161|consen 1553 -----QLELQQLRSEIERRLQE-------------------KDEEIEELRKNLQRQLESLQAELEA---------ETRSK 1599 (1930)
T ss_pred -----HHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHHHhhhH---------HHHHH
Confidence 01111222222222111 1112233332 23333333322 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy11582 1249 SPSRRYSPVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMR 1328 (1760)
Q Consensus 1249 sp~r~~sp~~~~~~~~~~~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~ 1328 (1760)
+- + + ..+-...-|+.-+ -..+..+.+...|+.-++..+..++.++....+-+......+...++
T Consensus 1600 ~e-~----~----r~KKkle~di~el-------E~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~ 1663 (1930)
T KOG0161|consen 1600 SE-A----L----RSKKKLEGDINEL-------EIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLA 1663 (1930)
T ss_pred HH-H----H----hhhhhhhcchHHH-------HHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 0000111122333 33446777777777777777777777777777666666666666666
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhH
Q psy11582 1329 ALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQ 1408 (1760)
Q Consensus 1329 ~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~ 1408 (1760)
.++.-=..+.+.+-+.++.+...+-+-++.+.|+-.+.+.|.-+=.+..+..++++.+...|.-+..+++....+.+..-
T Consensus 1664 ~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~ 1743 (1930)
T KOG0161|consen 1664 EAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAE 1743 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 66655555555566666666666666666666666666666555555555555555555555555555544444444443
Q ss_pred HHhhhhhhhhhhhhhhhccchhhHHHHHHhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchh
Q psy11582 1409 DELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGE 1488 (1760)
Q Consensus 1409 e~l~~~E~r~~~lel~rr~legelqR~~l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e 1488 (1760)
|.--.+-.-+.+ +-.|+---+-.....|...++|...+..|+-+|.+.|... +.+-+..+++
T Consensus 1744 Er~kka~~~a~~-------~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a------~~~~k~~i~~----- 1805 (1930)
T KOG0161|consen 1744 ERAKKAQADAAK-------LAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAA------LKGGKKQIAK----- 1805 (1930)
T ss_pred HHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhccHHHHHH-----
Confidence 332222221111 1122222222233334444444444444444444444321 1111222222
Q ss_pred hhhhHhHHHHhHHHHhhhhhhhhhhHHHHHHHHHhhhchhhhhHHHHhHHHHHHHHHHHHHhhhhhccchhhHHHHHHHH
Q psy11582 1489 TELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQAL 1568 (1760)
Q Consensus 1489 ~~Lr~~~~~l~~~l~~~~~~~~~~~~~l~~lqk~l~~~e~~~r~LqerL~~~r~~l~e~k~~~~~~~~~~~~l~~r~q~L 1568 (1760)
|..+|..|...|.. -...-....|.+-..+..-+.|+-.++.=+-.+.-++-..- -+..+|..+
T Consensus 1806 --Learir~LE~~l~~-------E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~d-------kl~~k~~~~ 1869 (1930)
T KOG0161|consen 1806 --LEARIRELESELEG-------EQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVD-------KLQAKIKQY 1869 (1930)
T ss_pred --HHHHHHHHHHHHhH-------hhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HHHHHHHHH
Confidence 23333333322222 11122223444444444445555555555555555555444 788888889
Q ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 1569 KREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQT 1610 (1760)
Q Consensus 1569 q~~l~d~e~~l~q~~~~e~~~~~~~~~lq~e~~~l~~rl~~~ 1610 (1760)
.+|+.++++...+.-.. ...+|.+..+..+|...+
T Consensus 1870 krQleeaE~~~~~~~~k-------~R~~q~ele~a~erad~~ 1904 (1930)
T KOG0161|consen 1870 KRQLEEAEEEANQNLSK-------YRKLQRELEEAEERADTA 1904 (1930)
T ss_pred HHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 98888888544443333 345555566666665544
No 4
>KOG4674|consensus
Probab=99.91 E-value=3.6e-12 Score=171.57 Aligned_cols=70 Identities=20% Similarity=0.125 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhh
Q psy11582 1356 DQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQR 1425 (1760)
Q Consensus 1356 ~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~r 1425 (1760)
...-.|..+.-++|..|.-.+.....++..|+..+.-+++......+++-.|++.-+.|-.|.-.|..+.
T Consensus 1232 ~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~ 1301 (1822)
T KOG4674|consen 1232 KVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKY 1301 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556666666666777777788888888888888888899999999999999999999988883
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.85 E-value=1.1e-12 Score=180.66 Aligned_cols=252 Identities=21% Similarity=0.265 Sum_probs=181.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTS------LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKR 465 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~Qaqk------Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~ 465 (1760)
.++..+..+|.+|.|.+.+++.++..|+.|+.+ +..++..+...+ ...++..+...+..+..+...+...+.
T Consensus 172 ~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 249 (1179)
T TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAEL--RELELALLVLRLEELREELEELQEELK 249 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988 455666666666 556667777777888888888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
.+...+..+..++..++..+.++...+..++.++..+...+.....++......+..++.+...+..++..+...+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 329 (1179)
T TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888777777777777777777777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 546 LAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAIL 625 (1760)
Q Consensus 546 Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~L 625 (1760)
.+++.+......+...+..+...+.+++..+..+......+...+..+...+..+..++..+..++..+..++..+...+
T Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (1179)
T TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666666666666665555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11582 626 FDTQSHLEQSDVKKEQLEHE 645 (1760)
Q Consensus 626 fe~Qq~l~qle~ekeqLE~E 645 (1760)
..++..+..+..++..+..+
T Consensus 410 ~~l~~~~~~l~~~~~~~~~~ 429 (1179)
T TIGR02168 410 ERLEDRRERLQQEIEELLKK 429 (1179)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 55555544444444444333
No 6
>KOG4674|consensus
Probab=99.85 E-value=3.1e-10 Score=153.44 Aligned_cols=911 Identities=18% Similarity=0.201 Sum_probs=440.6
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 474 LNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQ 553 (1760)
Q Consensus 474 Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leq 553 (1760)
+-+.+-+....++++...+..++++++.+..++.++...+...-.++....--...-++++..+.+.+..+.-+++...+
T Consensus 375 ~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q 454 (1822)
T KOG4674|consen 375 LASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQ 454 (1822)
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666677777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH---------------------------------HHH---H
Q psy11582 554 NKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY---------------------------------EIT---I 597 (1760)
Q Consensus 554 ek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km---------------------------------~v~---l 597 (1760)
.+-.+..-+..+.+...++..++..+.....++...+--+ .|. |
T Consensus 455 ~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI 534 (1822)
T KOG4674|consen 455 KIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNI 534 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccH
Confidence 7777777777777777777666666666666666665333 111 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy11582 598 EANDKELQRLQEQLASLRSDKESLEA-----ILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKEL-EDTE 671 (1760)
Q Consensus 598 ~alEre~~~L~eqla~LrseKesLEs-----~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~el-e~~~ 671 (1760)
..++.++..|-+.+-.|--.+++-++ .....+..+.....++.+|+.........++.+-.+...++.-+ +..-
T Consensus 535 ~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~ 614 (1822)
T KOG4674|consen 535 NELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELED 614 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 33333444333333333333333332 33445555666666677777777777777777777766663111 1111
Q ss_pred HH-HH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 672 KR-AQ-----ETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHA 745 (1760)
Q Consensus 672 ~~-~~-----~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~ 745 (1760)
.. .. -+.+......--.-++.+..|+.......+.+.++.+. +..|+.++..++..+++-...
T Consensus 615 ~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~-----------~~~l~~ev~~ir~~l~k~~~~ 683 (1822)
T KOG4674|consen 615 SHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQED-----------FDSLQKEVTAIRSQLEKLKNE 683 (1822)
T ss_pred cccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHH
Confidence 10 00 00000000011112233333444444444444444444 888888888888887666555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy11582 746 TVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQ-ALLIAQQDQKAIQDRLSQVLKELEEEKCTLDR 824 (1760)
Q Consensus 746 a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQ-aL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler 824 (1760)
...+ ..+++-|...|.....+++. |.+-+..=+ .++-.+..-.-+.+.|+.+-..++.+..+++-
T Consensus 684 ~~fA------------~ekle~L~~~ie~~K~e~~t--L~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~ 749 (1822)
T KOG4674|consen 684 LNLA------------KEKLENLEKNLELTKEEVET--LEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSN 749 (1822)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4322 23344566667777777776 444333333 44333333445688999999999999999999
Q ss_pred HHHHHhhccH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q psy11582 825 IKRESAGRSE------QDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSED 898 (1760)
Q Consensus 825 ~rrea~~~~e------~er~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEE 898 (1760)
+|+|-..... ++.+.+......|+-+...++...........+. ...+...+..+..++..++..+ ++
T Consensus 750 LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~---k~~~e~~i~eL~~el~~lk~kl---q~ 823 (1822)
T KOG4674|consen 750 LKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMAT---KDKCESRIKELERELQKLKKKL---QE 823 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 9888654433 3333333333333333333333222222222221 2333355555555555555553 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Q psy11582 899 KVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQART--IDEGLQK 976 (1760)
Q Consensus 899 Rid~lr~ele~LereL~elee~~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~--iEe~~qk 976 (1760)
....++.-.......+..+...++.+..++..+...+......+..+...+.+|...|.........+... +++.-..
T Consensus 824 ~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~ 903 (1822)
T KOG4674|consen 824 KSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATIL 903 (1822)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhh
Confidence 44444444444455555555555555555555555555555555555555555555554444333222210 1111111
Q ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHhhHHHHHHhhhhhhhhhhhhhhH
Q psy11582 977 IAVRF-GDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVT----LQEKCKFLEIEKEKYNFVISYLLCLFQV 1051 (1760)
Q Consensus 977 l~~L~-l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~elesEl~e----Lq~rL~~lE~e~e~~~~~~~~~~~~~~l 1051 (1760)
.-.|- ...+++.|+..+......+.++........+.+......+.+ +.+++..+.. +++.+
T Consensus 904 ~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~-------------k~tsl 970 (1822)
T KOG4674|consen 904 EDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHK-------------KITSL 970 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHH
Confidence 10011 223333333333333333333332222222222221111111 1111111100 11113
Q ss_pred HHHHHHHHhHHhhHH-----------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHhhhhHHHHHHH
Q psy11582 1052 EVELSQVTKDRSDLS-----------HQLSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVLLD 1120 (1760)
Q Consensus 1052 ~~El~~L~~e~~el~-----------~~l~~l~r~~~~~~~EL~~lr~kl~~~~e~~r~~~r~lee~~Ke~~~L~v~L~~ 1120 (1760)
+.++..|..++..+. .++.-+++++.+++.|+..+...+.+.+.....+...+.-.++.........+.
T Consensus 971 E~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~ 1050 (1822)
T KOG4674|consen 971 EEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYES 1050 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333332 334444444555555555555555555544444444444443222222222211
Q ss_pred HhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHhhhccccccCChHHHHHHHHHhhhhhccccccCCCC
Q psy11582 1121 LCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHAFYTLSEKEAELARIRAQYDAYKSMDCHTDR 1200 (1760)
Q Consensus 1121 l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s~Lrr~lg~~~~~~~~~sp~~~~~~~~~~~~d~~~~~~~~~~~ 1200 (1760)
==...+..-.-+..|..+++.+-+.... |+-......+
T Consensus 1051 el~~ha~~~q~l~kl~ee~~~~~~e~~~-----------Lk~~~~~~~~------------------------------- 1088 (1822)
T KOG4674|consen 1051 ELVQHADLTQKLIKLREEFAKCNDELLK-----------LKKSRESRHA------------------------------- 1088 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHh-------------------------------
Confidence 1112222222222233333322222111 1111110000
Q ss_pred CCchhhhhHHhhhHHHHHHHHhhhhhhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHhHHHHHHH
Q psy11582 1201 SSDLERYRAAQLHAESLLEAREKSHRQQVNRLENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEIVRKGVRN 1280 (1760)
Q Consensus 1201 ~~~~~~~~~~~~~a~~~le~~~~~~~~~~~r~~~~~~~~~~~~~~~~~sp~r~~sp~~~~~~~~~~~d~Dp~~vr~~lr~ 1280 (1760)
......++
T Consensus 1089 ------------------------------------------------------------------------~l~e~~~~ 1096 (1822)
T KOG4674|consen 1089 ------------------------------------------------------------------------LLSEQERD 1096 (1822)
T ss_pred ------------------------------------------------------------------------HHhhcccc
Confidence 00000111
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHH------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11582 1281 LMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNK------------MAQAQQTMRALQEEKYALETKLSQTKAAA 1348 (1760)
Q Consensus 1281 l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~------------~~qlq~~l~~~ee~kr~~e~~L~sa~~~l 1348 (1760)
.+-+=..++.|.+.+..++..|..|..=+|+.++..-.. ..+|+.-+.-+-.+|--++.++.-++.-.
T Consensus 1097 w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~ 1176 (1822)
T KOG4674|consen 1097 WSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKREN 1176 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHH
Confidence 112223345666666666666666666666665544333 34577777777777888888887766432
Q ss_pred HHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhc------hhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhh
Q psy11582 1349 NSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQG------DDKLMKCRESGARLDAEKRALQDELSRTEARVTKLE 1422 (1760)
Q Consensus 1349 ~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l------~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~le 1422 (1760)
.. .-..+..+.-.|..|.+++-+.++..... ..-+.+.-..+.-+-.....||+.+++-..+...|.
T Consensus 1177 ~~-------L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~ 1249 (1822)
T KOG4674|consen 1177 AR-------LKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELR 1249 (1822)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 21 11223334444555555665555554211 222333333444444667788888888777777777
Q ss_pred hhhccchhhHHHHHHhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHh-HHHHHHHHHHhhchhhhhhHhHHHHhHH
Q psy11582 1423 LQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTT-IDQLNLTLERASAGETELRGEIQTLQRN 1501 (1760)
Q Consensus 1423 l~rr~legelqR~~l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~-~erL~~~L~kae~~e~~Lr~~~~~l~~~ 1501 (1760)
-....++-++-.++..+.+..++++...-.+..|..-...---|+.+|-.. -+.=..++.|-...-..|++++......
T Consensus 1250 ~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~ 1329 (1822)
T KOG4674|consen 1250 DKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENL 1329 (1822)
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666666665555555544444443333333333333222 0000112222222333344444444555
Q ss_pred HHhhhhhhhhhhHHHHHHHHHhhhchhhhhHHHHhHHHHHHHHHHHHHhhh
Q psy11582 1502 LMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQV 1552 (1760)
Q Consensus 1502 l~~~~~~~~~~~~~l~~lqk~l~~~e~~~r~LqerL~~~r~~l~e~k~~~~ 1552 (1760)
++++..-+..++ ..+++.+-..++.++.+.+++..+...-.-+....+
T Consensus 1330 ~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~ 1377 (1822)
T KOG4674|consen 1330 IAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALS 1377 (1822)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555 333355555555555555555544444333333333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.83 E-value=2.1e-11 Score=168.33 Aligned_cols=270 Identities=18% Similarity=0.267 Sum_probs=130.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLT------SQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKR 465 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk------~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~ 465 (1760)
.++..+..+|.++.+.+.+++..+..|+.|+..+. .++..+...+ ...++..+...+..+..+...+...+.
T Consensus 170 ~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (1164)
T TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK--REYEGYELLKEKEALERQKEAIERQLA 247 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888888888888887777777643 3333444444 333333333444444444444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH---------------HHHHHHHhhhhhhHHHHHHHhhHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKL---------------FLQNELDRINSDMDAREVELRGKEDMNRRL 530 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~---------------el~~el~r~~~E~e~~q~~L~~LEek~S~L 530 (1760)
.+...+..+..++..+...+..++..+..++.++. .+...+......+......+..+..+...+
T Consensus 248 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 327 (1164)
T TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333 333333333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 531 REDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQ 610 (1760)
Q Consensus 531 r~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eq 610 (1760)
..++..+...+..+..+++.+..+...+...+..++..+..+...+..+......+...+..+...+..+..++..+..+
T Consensus 328 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 407 (1164)
T TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 611 LASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRL 663 (1760)
Q Consensus 611 la~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL 663 (1760)
+..+..+.+.++..+...+..+..+..+...+......+...++.++.++..+
T Consensus 408 ~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~ 460 (1164)
T TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555555555555544444444444443
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.4e-09 Score=151.75 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhh--hhhhhhhhhhhccchhhHHHHHHhh
Q psy11582 1362 LQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRT--EARVTKLELQRVALEGDQQRLQMLL 1439 (1760)
Q Consensus 1362 ~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~--E~r~~~lel~rr~legelqR~~l~l 1439 (1760)
...+..++..++.++...++++..+...++.++..+..+...++.+.+.+.-. ......++..+..|+.+.- .+..
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~--~~~~ 1049 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG--QMQV 1049 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccH
Confidence 33444444455556666666777777777777777777777777777766655 4444455555555544322 2344
Q ss_pred chHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHH
Q psy11582 1440 QEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLER 1483 (1760)
Q Consensus 1440 ~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~k 1483 (1760)
..+..+...+.+.+..+.+..+.+-..+..|...+..|...|..
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66777777778888888877777777777777777777777743
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.81 E-value=3.9e-11 Score=165.18 Aligned_cols=248 Identities=24% Similarity=0.315 Sum_probs=167.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTS------LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKR 465 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~Qaqk------Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~ 465 (1760)
.+|+.+++++.++.+.+.+++.++..|+.++.. ++.++..+...+ +..++..+...+..+..+...++....
T Consensus 179 ~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~ 256 (1163)
T COG1196 179 RKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL--LLAKLKELRKELEELEEELSRLEEELE 256 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999987 888888888888 888999999999998888888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
.+...+.....+++.++..+.++...+...+.+...+...+.....++.....++..+......+...+..+.+++....
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1163)
T COG1196 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877777777777777777777777777777776666666666666666655
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11582 546 LAKELLEQNKEEMQTLLAHIEKSKGDVEAEME----RLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESL 621 (1760)
Q Consensus 546 Lere~Leqek~el~~aL~~aE~slaeLE~ele----kLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesL 621 (1760)
-..........++............+++.... .+.+.+..+++.++.+..++..+..++..+..++..+...++.+
T Consensus 337 ~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~ 416 (1163)
T COG1196 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERL 416 (1163)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443344444444433333333333333 23333334444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11582 622 EAILFDTQSHLEQSDVKKEQ 641 (1760)
Q Consensus 622 Es~Lfe~Qq~l~qle~ekeq 641 (1760)
...+.++...+..+..+...
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~ 436 (1163)
T COG1196 417 SERLEDLKEELKELEAELEE 436 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444433333333333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.80 E-value=8.9e-12 Score=171.83 Aligned_cols=168 Identities=21% Similarity=0.231 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11582 858 KTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLAD 937 (1760)
Q Consensus 858 ~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~elrr~Lad 937 (1760)
...++..+..+...+..+...+..+..++..+.+.+.....++..+...+..+...+..+...+..+..++..+...+..
T Consensus 262 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 341 (1179)
T TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666666667777777766666677777666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 938 SNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRF-GDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLD 1016 (1760)
Q Consensus 938 le~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~qkl~~L~-l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~e 1016 (1760)
...++..+...+..+...+.........+...++.....+ . ...+...+.+.+..+...+..+..++..+...+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 418 (1179)
T TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL---ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555544444444555544444 3 45555566666666666555555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy11582 1017 LDSEKVTLQEKC 1028 (1760)
Q Consensus 1017 lesEl~eLq~rL 1028 (1760)
+..++..+...+
T Consensus 419 l~~~~~~~~~~~ 430 (1179)
T TIGR02168 419 LQQEIEELLKKL 430 (1179)
T ss_pred HHHHHHHHhhhh
Confidence 555544444433
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.79 E-value=2.2e-11 Score=168.19 Aligned_cols=208 Identities=19% Similarity=0.324 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q psy11582 1275 RKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEA 1354 (1760)
Q Consensus 1275 r~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeea 1354 (1760)
+..+-++..++..++.+-+++...+..+...+..+...+......+..+...+..++.....+...+......+..-++.
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~ 752 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666655555555555555555555555555555544444444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHh-----hHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhhccch
Q psy11582 1355 MDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKL-----MKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALE 1429 (1760)
Q Consensus 1355 l~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l-----~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~rr~le 1429 (1760)
+.....+...+..++..+...+...+.++..+...+ ..+...+..+..+...++..+...+.....++.....++
T Consensus 753 ~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 832 (1164)
T TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443332221 223333444444555555555555555555554444444
Q ss_pred hhHHHHHHhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHH
Q psy11582 1430 GDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLE 1482 (1760)
Q Consensus 1430 gelqR~~l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~ 1482 (1760)
.++..+.-.+...+.++..+...+..+...+...+..+..++..++.+...+.
T Consensus 833 ~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 885 (1164)
T TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333333333333333333333333333333333333333
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.4e-08 Score=141.83 Aligned_cols=117 Identities=9% Similarity=0.141 Sum_probs=69.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy11582 1272 EIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQA--QQTMRALQEEKYALETKLSQTKAAAN 1349 (1760)
Q Consensus 1272 ~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~ql--q~~l~~~ee~kr~~e~~L~sa~~~l~ 1349 (1760)
+.+...|...-..+.+++.+.+.+...+..+++.+.+...........+..+ +..+.+.+..=..++...+.+.-
T Consensus 973 ~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~--- 1049 (1311)
T TIGR00606 973 KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQV--- 1049 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH---
Confidence 4555566555666667777777776666666666666665555544444444 44444444444444444443322
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhh
Q psy11582 1350 SQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESG 1397 (1760)
Q Consensus 1350 ~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~ 1397 (1760)
.....|+..+.+++..|-..-....++++.++++|..++..+
T Consensus 1050 ------~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1050 ------LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777776666666677777666666666555
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.77 E-value=9.3e-11 Score=161.55 Aligned_cols=268 Identities=21% Similarity=0.297 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 737 AALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELE 816 (1760)
Q Consensus 737 ~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~ 816 (1760)
..+..+++.+...|+.=.+. +.+....+.++...+..|..+.+. |+.-+..-=-+...+...+.-++.....++.
T Consensus 168 ~~y~~r~~ea~~~L~~~~~n-l~~~~~~~~el~~~l~~L~~q~~~----a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~ 242 (1163)
T COG1196 168 SKYKERKEEAERKLERTEEN-LERLEDLLEELEKQLEKLERQAEK----AERYQELKAELRELELALLLAKLKELRKELE 242 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655543222 334567777777788888877776 2211111000233344455666666666666
Q ss_pred HHHhhHHHHHHHHhhccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11582 817 EEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLS 896 (1760)
Q Consensus 817 ~a~~eler~rrea~~~~e~er~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~Ll 896 (1760)
.+..++..+..+. +++.............+..++..+...+..++.....+...+..+...+...
T Consensus 243 ~~~~~l~~~~~~~---------------~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 307 (1163)
T COG1196 243 ELEEELSRLEEEL---------------EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLL 307 (1163)
T ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555553 3444455555666677778888888888888888888888999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11582 897 EDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQK 976 (1760)
Q Consensus 897 EERid~lr~ele~LereL~elee~~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~qk 976 (1760)
.+++.........+...+..+...+......+.........+......+.....++........ .+....++..+..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~ 384 (1163)
T COG1196 308 RERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALL---EELEELFEALREE 384 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Confidence 9999999999888888888888888888888777654344444444444444444444333111 2233333444444
Q ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy11582 977 IAVRF-GDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKF 1030 (1760)
Q Consensus 977 l~~L~-l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~ 1030 (1760)
+ . ...+.+.+.+.+..+...+..+..++..+......+..++..+...+..
T Consensus 385 ~---~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1163)
T COG1196 385 L---AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436 (1163)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 3 4555666666666666666666666666555555555555555555554
No 14
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.69 E-value=4.6e-09 Score=136.42 Aligned_cols=77 Identities=23% Similarity=0.263 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHhhhhHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhh
Q psy11582 1079 VVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSS 1155 (1760)
Q Consensus 1079 ~~~EL~~lr~kl~~~~e~~r~~~r~lee~~Ke~~~L~v~L~~l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~ 1155 (1760)
...+|....+.+.........+++.++++.-+...+...+..|+++|..+.+.+...+.+|...++.|+---..+-.
T Consensus 641 ~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~ 717 (775)
T PF10174_consen 641 EERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLE 717 (775)
T ss_pred HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666678888888888888888999999999999999999999999999987654444433
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.68 E-value=1.4e-08 Score=132.12 Aligned_cols=370 Identities=14% Similarity=0.212 Sum_probs=181.5
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhh-----hhhH-------HHHHHHHHHHHHHHHHHHHHH
Q psy11582 282 LKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEA-----DQNV-------LLVEEMQQELELLQNTLRDIA 349 (1760)
Q Consensus 282 Lq~rl~el~~~~e~l~~q~~eke~~i~~L~~~l~~LEs~~~~~-----~~~~-------~~~~~~~~~~~~lq~~l~dia 349 (1760)
|++++..+...++.|+..++.+...+...+.+|..+=|.-..- .-.. ++++....+...++..+..+.
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq 80 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ 80 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5778888999999999999999888888888876632211100 0001 233333333333333333221
Q ss_pred HHHHhccCCCC-CCCCCCCCCCCCCCCCCCCCCCCCcchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 350 RAVIQDAEGKD-IPSRPAPLKRHATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQ 428 (1760)
Q Consensus 350 ~~~~~d~~~~~-~~~~~~~~~~~~sp~~~~~~~r~~s~a~~~~~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~E 428 (1760)
-.+-...+... ......+++...+|. . |+-++.++.||..-.+..-.++..|..-+.++...
T Consensus 81 eELr~q~e~~rL~~~~e~~~~e~e~l~----------------~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~ 143 (775)
T PF10174_consen 81 EELRAQRELNRLQQELEKAQYEFESLQ----------------E-LDKAQEQFERLQAERERLQRELERLRKTLEELQLR 143 (775)
T ss_pred HHHHHhhHHHHHHHHhhhcccccchhh----------------h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000 000000111111110 2 77888888888877777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH------
Q psy11582 429 LDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFL------ 502 (1760)
Q Consensus 429 l~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el------ 502 (1760)
+..+...++.+.-+++.|...+..-+.....-... ......+...+..+..+.......+.....+.+++.-.
T Consensus 144 ~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~-~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~ 222 (775)
T PF10174_consen 144 IETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED-NEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERD 222 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCC
Confidence 77777777777777777777664322111111111 11222344444444444444444444443332211100
Q ss_pred HHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhH
Q psy11582 503 QNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLD 582 (1760)
Q Consensus 503 ~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE 582 (1760)
-..-..+++.++.....+..+|.-+..+..|+..++..+.-+...++.+..+..........+...+..+...|.+-.+|
T Consensus 223 ~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E 302 (775)
T PF10174_consen 223 DAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSE 302 (775)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00001234444555555555555555566666666666665566666666666665555555555555555555555555
Q ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 583 RSDMNEQISKY--------------EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQE 648 (1760)
Q Consensus 583 ~a~lrdsL~Km--------------~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~ 648 (1760)
+..++..|..+ ...+.+.+.....|.-++..|+...+.-.+.+...+..+..+..++..+.+++..
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~ 382 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED 382 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444 4444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11582 649 LLVKQESLKGQVVRLNKELED 669 (1760)
Q Consensus 649 l~~~~E~Lq~el~rL~~ele~ 669 (1760)
+....+....+|..|+..+|+
T Consensus 383 l~d~~d~~e~ki~~Lq~kie~ 403 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKKIEN 403 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=99.61 E-value=1.7e-08 Score=136.38 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=69.2
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHH
Q psy11582 511 SDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQI 590 (1760)
Q Consensus 511 ~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL 590 (1760)
.+++..+..+..++.+...+..++..+...+..+..+++.+..++.......+.++....++...+..+......+++.+
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l 337 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA 337 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555554444444444444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 591 SKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQ 653 (1760)
Q Consensus 591 ~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~ 653 (1760)
..+......+...+..+...+..++.....+.+.+..+...+...+..+..++.+...+...+
T Consensus 338 ~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444444444444444444444444444444444444444444444443333
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=99.56 E-value=4.7e-08 Score=132.25 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 592 KYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELL 650 (1760)
Q Consensus 592 Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~ 650 (1760)
.+...+..+++....+.++++.+..+...++..+......+..++.+++.+...+..+.
T Consensus 346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~ 404 (880)
T PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 33444444444444455555555555555555555555555555555555544444333
No 18
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.52 E-value=1.5e-15 Score=200.89 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---
Q psy11582 1272 EIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAA--- 1348 (1760)
Q Consensus 1272 ~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l--- 1348 (1760)
.-+...|.+|...|.+..+.+++++.++..+.+++.-+......+... +..++-.|+.++..+.-+..-+
T Consensus 577 kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~-------~~~a~r~rk~aE~el~e~~~~~~~l 649 (859)
T PF01576_consen 577 KKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREA-------LEQAERARKQAESELDELQERLNEL 649 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777778888888888887777777776665444 4444555555555554444322
Q ss_pred HHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhhccc
Q psy11582 1349 NSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVAL 1428 (1760)
Q Consensus 1349 ~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~rr~l 1428 (1760)
..+-.+ ...+.+.|-.+|.+|+..+--...+...+.++.++..+..+.+..+++.-++.....|+-...||.+
T Consensus 650 ~~~~~~---l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q---- 722 (859)
T PF01576_consen 650 TSQNSS---LSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQ---- 722 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 222222 3567788889999999999999999999999999999888888888888887655555554444444
Q ss_pred hhhHHHHHHhhchHHH
Q psy11582 1429 EGDQQRLQMLLQEKET 1444 (1760)
Q Consensus 1429 egelqR~~l~l~~~E~ 1444 (1760)
+.-++..|.+.|+
T Consensus 723 ---~keLq~rl~e~E~ 735 (859)
T PF01576_consen 723 ---VKELQARLEEAEQ 735 (859)
T ss_dssp ----------------
T ss_pred ---HHHHHHHHHHHHH
Confidence 4444444444444
No 19
>KOG0996|consensus
Probab=99.49 E-value=1e-06 Score=114.59 Aligned_cols=642 Identities=19% Similarity=0.232 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHH
Q psy11582 837 RNTINTLREQLNRTVAKLE----ELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETAR 912 (1760)
Q Consensus 837 r~~i~~l~eEL~~~~~~le----ea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~Ler 912 (1760)
.+.+..+.++|+.....|. +-..+.......+.+....+.+....+..+...+..+-.-.++...++...+..+..
T Consensus 340 ~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKlek 419 (1293)
T KOG0996|consen 340 QEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEK 419 (1293)
T ss_pred HHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555 122223333333444455555566677777777777766667777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHH
Q psy11582 913 RLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRF-GDDEKQALRN 991 (1760)
Q Consensus 913 eL~elee~~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~qkl~~L~-l~qE~aeLrn 991 (1760)
++.....+...+.+.....+..+.+++.+.+.+.......+..+.... .++...-+....++ . ...+...+..
T Consensus 420 e~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~---~~l~~~t~~~~~e~---~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 420 EIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL---DSLKQETEGIREEI---EKLEKELMPLLK 493 (1293)
T ss_pred HHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhHHHH---HHHHHHHHHHHH
Confidence 666666666666666666666666666655555555544444443333 23322222223333 2 3445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHH
Q psy11582 992 QLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSL 1071 (1760)
Q Consensus 992 qLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~ 1071 (1760)
++..+.....-++.++.-+............+++.++........+. -+-+..+..++..++.++.+....+..
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~------~~~l~~~k~~l~~~k~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEK------KTELDDLKEELPSLKQELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhHHHHHHHHHHhHHH
Confidence 55555555555555666666666666666666666666654444441 011222555666666666666666666
Q ss_pred HHhhhhhhHHHHHHHHHHHH---HHHHHHHHhHHhhHHHHHhhhhHHHHHHHHhhhhhhhhhhHHhH---HHHHHHHHhh
Q psy11582 1072 LQRKKENVVEDLARLKQKYE---QSVEMNNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERVRAS---SAHLLQLEAS 1145 (1760)
Q Consensus 1072 l~r~~~~~~~EL~~lr~kl~---~~~e~~r~~~r~lee~~Ke~~~L~v~L~~l~~rl~~a~~r~~~l---e~eL~~~e~~ 1145 (1760)
+..+...+..-+..+++++. .++..++...+-|..+.+.+. ..++.|.-||+-+| +..+..|=+.
T Consensus 568 ~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~ke---------sG~i~Gf~GRLGDLg~Id~kYDvAIsT 638 (1293)
T KOG0996|consen 568 LRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKE---------SGRIPGFYGRLGDLGAIDEKYDVAIST 638 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH---------cCCCCccccccccccccchHHHHHHHH
Confidence 55555556666666666666 334444444444443331111 14455555665433 3333322211
Q ss_pred HHHHHHHhhhh----------hHHHHHHHhhhccccccCChHHHHHHHHHhhhhhccccccCCCCCCch----------h
Q psy11582 1146 KKDVEHKLSSI----------GSTLRRIAALRYHAFYTLSEKEAELARIRAQYDAYKSMDCHTDRSSDL----------E 1205 (1760)
Q Consensus 1146 rr~~e~~L~~l----------~s~Lrr~lg~~~~~~~~~sp~~~~~~~~~~~~d~~~~~~~~~~~~~~~----------~ 1205 (1760)
+=+.|..| |=.+.+..++++..|+. |.++. -+.+.-+. +-.|.+.| .
T Consensus 639 ---ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~-------LDki~--~~~~~l~~-i~tpenvPRLfDLv~~~d~ 705 (1293)
T KOG0996|consen 639 ---ACARLDYIVVDTIETAQECINFLKKNNLGRATFII-------LDKIK--DHQKKLAP-ITTPENVPRLFDLVKCKDE 705 (1293)
T ss_pred ---hccccceEEeccHHHHHHHHHHHHHcCCCceeEEe-------hHhhh--hhhhccCC-CCCCCCcchHhhhhccCCH
Confidence 22233221 11122333443333310 22210 00010000 11111111 1
Q ss_pred hhhHHhhhHHHH------HHH-----HhhhhhhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCChHh
Q psy11582 1206 RYRAAQLHAESL------LEA-----REKSHRQQVNRLENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEG-LIDVDPEI 1273 (1760)
Q Consensus 1206 ~~~~~~~~a~~~------le~-----~~~~~~~~~~r~~~~~~~~~~~~~~~~~sp~r~~sp~~~~~~~~~-~~d~Dp~~ 1273 (1760)
+..|+=-.|+.- |+- |.+..+--+=.|.| +.-+....|+ .++-.|.+|..+.+- ..+++|++
T Consensus 706 ~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G----~lIe~SGtmt--GGG~~v~~g~mg~~~~~t~~s~~~ 779 (1293)
T KOG0996|consen 706 KFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDG----SLIEKSGTMT--GGGKKVKGGRMGTSIRVTGVSKES 779 (1293)
T ss_pred HHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecc----eeeccccccc--CCCCcCCCCCCCCccccCCCCHHH
Confidence 111211111111 110 11111000112222 2111111111 011123333333332 35778887
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q psy11582 1274 VRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSE 1353 (1760)
Q Consensus 1274 vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qee 1353 (1760)
|.+. -++|..+...-..+...+..++..++++.+.=..++.+|+-..+....+
T Consensus 780 v~~l-------------------------e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~-- 832 (1293)
T KOG0996|consen 780 VEKL-------------------------ERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRL-- 832 (1293)
T ss_pred HHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHH--
Confidence 7542 2333333333333333444445555555544445555555444443333
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhhccchhhHH
Q psy11582 1354 AMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQ 1433 (1760)
Q Consensus 1354 al~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~rr~legelq 1433 (1760)
..+...|...|+.+|.........+..+ +.++...+.++.+.-.+++.-.. .++...|-..+..+=|+
T Consensus 833 -----~~~~~~l~~~i~~~E~~~~k~~~d~~~l----~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e-- 900 (1293)
T KOG0996|consen 833 -----AELIEYLESQIAELEAAVLKKVVDKKRL----KELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGE-- 900 (1293)
T ss_pred -----HHHHHHHHHHHHHHHHHhhhccCcHHHH----HHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhch--
Confidence 3356667777777777655544444433 33444455555555555532111 35666666666666666
Q ss_pred HHHHhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhhhhhhh
Q psy11582 1434 RLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNC 1513 (1760)
Q Consensus 1434 R~~l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~~~~~~ 1513 (1760)
.++.-++.++.+..++..++...+.+..-+.-=...++|+....+.|...+..+...+..+.....++.
T Consensus 901 -----------~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~ 969 (1293)
T KOG0996|consen 901 -----------KVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLE 969 (1293)
T ss_pred -----------hhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 466668889999999999999999988888888888999999999999999999998888888999999
Q ss_pred HHHHHHHHHhhhchhhhhHHHHhHHHHHHHHHHHHHhhhhhccchhhHHH-HHHHHHHHHHhhh
Q psy11582 1514 EKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKA-MTQALKREIKDLS 1576 (1760)
Q Consensus 1514 ~~l~~lqk~l~~~e~~~r~LqerL~~~r~~l~e~k~~~~~~~~~~~~l~~-r~q~Lq~~l~d~e 1576 (1760)
+++..+.+.+..|++...-+.+.+..+...+.+.++..+ ++.. ||- ++..+.++.
T Consensus 970 ~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~-------~lk~~rId-~~~K~e~~~ 1025 (1293)
T KOG0996|consen 970 EKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSEN-------ELKAERID-IENKLEAIN 1025 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcc-HHHHHHHHH
Confidence 999999999999999999999999999999999998888 6665 433 554444433
No 20
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.47 E-value=7.1e-15 Score=194.70 Aligned_cols=671 Identities=20% Similarity=0.289 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 394 LATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVES 473 (1760)
Q Consensus 394 Lestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~ 473 (1760)
+.....++..+.+.....++.++.++.++..++..++.....+.++.....++...+..|.......+.....+......
T Consensus 161 ~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~ 240 (859)
T PF01576_consen 161 LDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSS 240 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555544444444444444444444444
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy11582 474 LNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLA------ 547 (1760)
Q Consensus 474 Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Le------ 547 (1760)
|...++.++..+.+-.+....+...+..+..++..+...++--......++...+.+..++...+.++..-...
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE 320 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE 320 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence 44444444444444444444444444444444444444444444444455555555556666655555443222
Q ss_pred --HHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 548 --KELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAIL 625 (1760)
Q Consensus 548 --re~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~L 625 (1760)
+--+...+.++...+..+......++....+|..++.+++..|++.......+++....+..+++..+...+.+...+
T Consensus 321 eaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~ 400 (859)
T PF01576_consen 321 EAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAER 400 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 233344555556666666666666666666677777777777776666666666666666666666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhH
Q psy11582 626 FDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEE 705 (1760)
Q Consensus 626 fe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E 705 (1760)
..++.....+.+++-.|...+..+...++.+..+...|..+++.-.. ++.. ...
T Consensus 401 d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~-----------q~~~---------------~~k 454 (859)
T PF01576_consen 401 DAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTS-----------QLDD---------------AGK 454 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchh-----------hhhh---------------hcc
Confidence 55555555555555555555544444444444333333322221111 1100 011
Q ss_pred HhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy11582 706 CVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLR 785 (1760)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll~ 785 (1760)
.|..|.-. ..+|..+++.+...| .+.+.++ .-.+..+-.|+.+|..+.++|+..+-.
T Consensus 455 ~v~eLek~-----------kr~LE~e~~El~~~l-eE~E~~l-----------~~~E~~~lRl~~el~~~r~e~er~l~e 511 (859)
T PF01576_consen 455 SVHELEKA-----------KRRLEQEKEELQEQL-EEAEDAL-----------EAEEQKKLRLQVELQQLRQEIERELQE 511 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chHHHHHH-----------HHHHHHHHHHHHHHH-HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10000000 122222222111111 0111111 112233344445555555555442222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHhhccHHhHHHHHHHHHHHHHHHHHHHHH---HH
Q psy11582 786 AEGDKQQALLIAQQDQKAIQDRLSQVLKELEEE---KCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEEL---KT 859 (1760)
Q Consensus 786 aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a---~~eler~rrea~~~~e~er~~i~~l~eEL~~~~~~leea---~~ 859 (1760)
-|-+ ++.-|..+.-.|..++.+|... +..+-|.|..+ ..++..+..+|+.+ ..
T Consensus 512 KeeE-------~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKL--------------E~~l~eLe~~ld~~n~~~~ 570 (859)
T PF01576_consen 512 KEEE-------FEETRRNHQRQLESLEAELEEERKERAEALREKKKL--------------ESDLNELEIQLDHANRANE 570 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhH-------HHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHhHH
Confidence 1211 2233555555555555555332 22233333333 33444444444333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy11582 860 RTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSN 939 (1760)
Q Consensus 860 ~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~elrr~Ladle 939 (1760)
.....+..+...+..++..++......+.+..++.+.+-++..+..++.++...+..+......+..++.++...+..+.
T Consensus 571 e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~ 650 (859)
T PF01576_consen 571 EAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELT 650 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777778888888888888888888888888888888888888888877777777777777766655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy11582 940 FEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDS 1019 (1760)
Q Consensus 940 ~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~qkl~~L~l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~eles 1019 (1760)
.....+......+...| ..+...+++..+.... ..........++..+...+..-+.....++.....++.
T Consensus 651 ~~~~~l~~~kr~le~~i-------~~l~~eleE~~~~~~~--~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~ 721 (859)
T PF01576_consen 651 SQNSSLSEEKRKLEAEI-------QQLEEELEEEQSEAEA--AEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALER 721 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333333 3444444444433311 22233333333444444444444455556777777788
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHH
Q psy11582 1020 EKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYE---QSVEM 1096 (1760)
Q Consensus 1020 El~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~lr~kl~---~~~e~ 1096 (1760)
.+.+++.++..+|..--.- ...-+..|-..+.+|+.+++.=++....+..-+-++-+++. -.++.
T Consensus 722 q~keLq~rl~e~E~~~~~~------------~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee 789 (859)
T PF01576_consen 722 QVKELQARLEEAEQSALKG------------GKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEE 789 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhcc------------cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 8888888888866654442 45566777778888888888877777777777777766665 55556
Q ss_pred HHHhHHhhHHHHHhhhhHHHHHHHHhhhhhhhhhhH-------HhHHHHHHHHHhhHHHHHHHhhhhhH
Q psy11582 1097 NNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERV-------RASSAHLLQLEASKKDVEHKLSSIGS 1158 (1760)
Q Consensus 1097 ~r~~~r~lee~~Ke~~~L~v~L~~l~~rl~~a~~r~-------~~le~eL~~~e~~rr~~e~~L~~l~s 1158 (1760)
-++..-.+.|++ .-+..+|..++-.++.|+..+ +-+.-+|-.++-.-..++..|++|.+
T Consensus 790 ~~k~~~~~~d~~---~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~e~~~~~e~~l~~lr~ 855 (859)
T PF01576_consen 790 ERKNAERLQDLV---DKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAEERAEAAERELNKLRA 855 (859)
T ss_dssp --------------------------------------------SSSSHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666667777 666666666666666665443 33334444444444445555555443
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=1.1e-05 Score=109.68 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy11582 926 KDLLDTKTHLADSNFEKDKYAKSNKDLREMV 956 (1760)
Q Consensus 926 kEL~elrr~Ladle~Eke~lq~sl~ELre~L 956 (1760)
..+..+...+..+...+..+...+..+...+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i 696 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTL 696 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=1e-05 Score=109.71 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 755 DCELSRLQANLCQLQSHIDKICQQHED 781 (1760)
Q Consensus 755 ~el~~~~~~e~~~L~~ei~~l~qe~de 781 (1760)
.+++.++..++..+..+|..+..+...
T Consensus 451 ~el~~~~~~ei~~l~~~~~~l~~~~~~ 477 (880)
T PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERK 477 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 23
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.36 E-value=3.7e-05 Score=107.36 Aligned_cols=298 Identities=16% Similarity=0.135 Sum_probs=135.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMV 471 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~ev 471 (1760)
.+|..++.++.+|.+.+.+++..+..|+.++.+++.-..... ....+..++..+...++.+..........+.++..++
T Consensus 300 kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeel 378 (1486)
T PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQ 378 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998544333222 2112234444444444444444444444443333333
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 472 ESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELL 551 (1760)
Q Consensus 472 e~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~L 551 (1760)
..++.++..+...+..++.++..++..+..++.++..+ +..+ ..+..+++-..-..+..+.|
T Consensus 379 eeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~-------qq~i-----------~~Le~~~~~~~~~~~SdEeL 440 (1486)
T PRK04863 379 EENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQY-------QQAV-----------QALERAKQLCGLPDLTADNA 440 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----------HHHHHHHHHhCCCCCCHHHH
Confidence 33333333333333333333322222222222222111 1111 22222332222222333333
Q ss_pred HHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 552 EQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY---------------EITIEANDKELQRLQEQLASLRS 616 (1760)
Q Consensus 552 eqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km---------------~v~l~alEre~~~L~eqla~Lrs 616 (1760)
......+...+..++..+.+++..++.+......++..+..+ -..+-..-++...+..++..++.
T Consensus 441 e~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRM 520 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH
Confidence 333333333333344444444444444444333333333333 11112222344455566666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy11582 617 DKESLEAILFDTQSHLEQSDVKKEQL------EHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDA 690 (1760)
Q Consensus 617 eKesLEs~Lfe~Qq~l~qle~ekeqL------E~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~ 690 (1760)
..-.|+..|..-+.....+..-...+ +..+..+....+.....+..-....-.....+++..+.|.+++.+.+.
T Consensus 521 ~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~ 600 (1486)
T PRK04863 521 RLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665544322221111111111 111222222222222222222223333445566666677777777777
Q ss_pred HHHHHHHHHHHHhhHHhhhhhHH
Q psy11582 691 DYQNQISNLKKQNEECVTKLTEE 713 (1760)
Q Consensus 691 e~q~~L~~~~~ah~E~~~~~~~~ 713 (1760)
-|..++.. .+.+++|.|+
T Consensus 601 ~ap~W~~a-----~~al~~L~eq 618 (1486)
T PRK04863 601 RAPAWLAA-----QDALARLREQ 618 (1486)
T ss_pred hChHHHhh-----HHHHHHHHHh
Confidence 77776543 4555556655
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.31 E-value=6.6e-05 Score=104.85 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHH
Q psy11582 846 QLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKE 916 (1760)
Q Consensus 846 EL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~e 916 (1760)
+|..-...++.....+......++..+...+..+..+..++......+...+..+..+......+..++..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 674 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEE 674 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555556666666666555555555555555555554444444443
No 25
>KOG0250|consensus
Probab=99.15 E-value=0.00013 Score=96.03 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=34.0
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy11582 1267 IDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQ 1331 (1760)
Q Consensus 1267 ~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~e 1331 (1760)
|++|-.+++..+ .++++|..+...++..+..+..+.+..++..+..+.++.......+
T Consensus 652 ~~~~~~s~d~~i-------e~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~ 709 (1074)
T KOG0250|consen 652 PGVDEFSFDDEI-------EDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIK 709 (1074)
T ss_pred ccccchhHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888777 5555555555555555555555555555555555555554444444
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.12 E-value=0.00048 Score=96.46 Aligned_cols=192 Identities=22% Similarity=0.331 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11582 617 DKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQI 696 (1760)
Q Consensus 617 eKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~e~q~~L 696 (1760)
..+.|+..+..+...+.....+.++++..+..+...++.++.++......++.. +.+...+.....+.+.....++
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQA----EQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666666655544433332 3333444445555555555555
Q ss_pred HHHHHHhhHHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 697 SNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKIC 776 (1760)
Q Consensus 697 ~~~~~ah~E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~ 776 (1760)
+.....++..+..+... +..+..+++.....+...+....-.+.....++.......++.+..+|....
T Consensus 677 ~~~~~~~~~~l~~l~~~-----------l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~ 745 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEE-----------LKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAK 745 (1201)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444 6666666666665555555555444445555666666777888888888888
Q ss_pred HHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy11582 777 QQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKR 827 (1760)
Q Consensus 777 qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rr 827 (1760)
+++++-+-..+....+.|..+-.+- .+|..+..+++.+..+|.++..
T Consensus 746 ~~~~~~~~~le~~~~~eL~~~GvD~----~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 746 QEAKEQLKELEQQYNQELAGKGVDP----ERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777666775554443 2334444444444444444433
No 27
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=99.08 E-value=1.7e-05 Score=102.52 Aligned_cols=349 Identities=19% Similarity=0.214 Sum_probs=189.7
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH-H
Q psy11582 1267 IDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQT-K 1345 (1760)
Q Consensus 1267 ~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa-~ 1345 (1760)
+|+=-+.==.-+++|=|+|.+++||+..+-..|....++|.-+.........++..|-..|..+..-....+..-..- .
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~ 335 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE 335 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 355444445678999999999999999999999999999988888777777777777777766654211111100000 0
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhh--
Q psy11582 1346 AAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLEL-- 1423 (1760)
Q Consensus 1346 ~~l~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel-- 1423 (1760)
....++++ -...+.... .+-.|+.....+..|...|...|+.++.....++. +-.+....|++....|.-
T Consensus 336 ~~~~s~~d---~~~ye~Di~--~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl 407 (717)
T PF09730_consen 336 KERDSHED---GDYYEVDIN--GLEILECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKL 407 (717)
T ss_pred cccccccc---cchhhhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 00001111 000111111 12224555555555666666666666555555444 333333444444444433
Q ss_pred ------------hhccchhhHHHHHHhhchHHHHhHHhHHHHHHHhhhhhhhHHhh-hhHHHh-----HHHHHHHHHHhh
Q psy11582 1424 ------------QRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERC-TSLKTT-----IDQLNLTLERAS 1485 (1760)
Q Consensus 1424 ------------~rr~legelqR~~l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~-~~L~~~-----~erL~~~L~kae 1485 (1760)
....|+.||+-+....++....+...|+-+-.....|+.+--.+ ..-..| .|..+..-.-..
T Consensus 408 ~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~ 487 (717)
T PF09730_consen 408 MSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRR 487 (717)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhc
Confidence 45555666666666666666666666666666666666554432 211111 122222111000
Q ss_pred c---hh-----------------------------hhhhHh----HHHHhHHHHhhhhhhhhhhHHHHHHHHHhh-----
Q psy11582 1486 A---GE-----------------------------TELRGE----IQTLQRNLMDTSLNSQSNCEKLKQLQKLLH----- 1524 (1760)
Q Consensus 1486 ~---~e-----------------------------~~Lr~~----~~~l~~~l~~~~~~~~~~~~~l~~lqk~l~----- 1524 (1760)
. .+ +-.... +..+....+..........|++++|+.++.
T Consensus 488 ~~~~~e~~~~~s~~~~~~~~~~~e~~~~~~~~~~~s~~~s~~~S~~~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~ 567 (717)
T PF09730_consen 488 ESSSVEERGLSSPILTDRGASSREMITSESGESSPSPSSSCPGSPVSDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTEL 567 (717)
T ss_pred cCCCcccccccCcccccccccccccccCCCCCCCCCCCCCCCCCccchhccCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000000 001111222344556678899999998774
Q ss_pred ------------hchhhhhHHHHhHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH----hhh---HHHHHHhHH
Q psy11582 1525 ------------SAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIK----DLS---DAHTQESNK 1585 (1760)
Q Consensus 1525 ------------~~e~~~r~LqerL~~~r~~l~e~k~~~~~~~~~~~~l~~r~q~Lq~~l~----d~e---~~l~q~~~~ 1585 (1760)
.++.|+..|++....+++-|+==+-|.+ +|.--|. -+| -.|+..=+.
T Consensus 568 srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQIa--------------TLRTVLKANKqTAEvALanLKsKYE~ 633 (717)
T PF09730_consen 568 SRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQIA--------------TLRTVLKANKQTAEVALANLKSKYEN 633 (717)
T ss_pred HhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1367888899999999988886666665 5552221 111 112222222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHH-----h----------hhhHHhHHHHHHhhhHHhhhhc
Q psy11582 1586 MAQA-QQTMRALQEEKYALETKLSQTKAAA-----N----------SQNELEVKEVARAGLESQLRMS 1637 (1760)
Q Consensus 1586 e~~~-~~~~~~lq~e~~~l~~rl~~~~~~~-----~----------~~~~l~~~ev~rs~le~~lr~~ 1637 (1760)
|... -.++.+|.+|++.|.+--+.|=+-. | +|++|+-.|-++..|-+=|||+
T Consensus 634 EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmA 701 (717)
T PF09730_consen 634 EKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMA 701 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222 2346889999999998875332211 1 7888888888888887777765
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.90 E-value=7.4e-05 Score=93.76 Aligned_cols=102 Identities=17% Similarity=0.332 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 393 KLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVE 472 (1760)
Q Consensus 393 KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve 472 (1760)
+|+.++.-...|.+.....+++...|+.++.++..++.......+.+....+.+....+.+..+.+.|.....+....|.
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~ 223 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIR 223 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444445555555555555555555555
Q ss_pred HHHHhHHHHHHHhHHHHHHHHH
Q psy11582 473 SLNSNLDKVQKNNSRLSKINES 494 (1760)
Q Consensus 473 ~Le~e~ekLk~~~~eLqrq~d~ 494 (1760)
.|+.++..+.....+.++..+.
T Consensus 224 ~LEedi~~l~qk~~E~e~~~~~ 245 (546)
T PF07888_consen 224 ELEEDIKTLTQKEKEQEKELDK 245 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444433333333
No 29
>KOG0996|consensus
Probab=98.90 E-value=0.0016 Score=86.27 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=77.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 519 ELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIE 598 (1760)
Q Consensus 519 ~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~ 598 (1760)
..+-.+.....+++--..+++....+...+..++.+-....+.|.++-+.+..|+.++++.+.+..+++....+....+.
T Consensus 364 ~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~ 443 (1293)
T KOG0996|consen 364 EVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQ 443 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHH
Confidence 33444444444554445555555555556666666666667777777777777777777777777777666666655555
Q ss_pred HHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 599 ANDKELQRLQEQLASLRSD----KESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKE 666 (1760)
Q Consensus 599 alEre~~~L~eqla~Lrse----KesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~e 666 (1760)
.+..++..|.+.+...+.+ ++++...-.-....+..++.+...+...+..+.........++.-|..-
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444333332 2222222222333333334444444444444444444444444433333
No 30
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.87 E-value=0.0016 Score=84.83 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=88.2
Q ss_pred ChHhHHHHHHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy11582 1270 DPEIVRKGVRNLMQQVAQ-----------------IERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQE 1332 (1760)
Q Consensus 1270 Dp~~vr~~lr~l~q~l~~-----------------~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee 1332 (1760)
-+.+|++.|+-|..=|.. +.++..++..++..|+.=|+-=.++|.-..|-++ -
T Consensus 546 l~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLK----------A 615 (717)
T PF09730_consen 546 LVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQIATLRTVLK----------A 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 357888888886655531 1355556777888888888776666655444332 2
Q ss_pred HHHHHHHHhhhHHHHH----HHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhh-hchhHhhHhHhhhhhhHHHHHHh
Q psy11582 1333 EKYALETKLSQTKAAA----NSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKS-QGDDKLMKCRESGARLDAEKRAL 1407 (1760)
Q Consensus 1333 ~kr~~e~~L~sa~~~l----~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r-~l~e~l~klra~~~~l~~e~r~L 1407 (1760)
-|.-+|..|++.+.-+ ....|++-+.-.|.+++++-.|+| -|+++.=+-++ .+--+|..|+..++-++.|++-|
T Consensus 616 NKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATF-sSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTL 694 (717)
T PF09730_consen 616 NKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATF-SSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTL 694 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3667888888888655 456789999999999999999888 35555555544 24446667777777777777665
Q ss_pred H
Q psy11582 1408 Q 1408 (1760)
Q Consensus 1408 ~ 1408 (1760)
-
T Consensus 695 N 695 (717)
T PF09730_consen 695 N 695 (717)
T ss_pred H
Confidence 4
No 31
>KOG0250|consensus
Probab=98.84 E-value=0.0024 Score=84.65 Aligned_cols=297 Identities=19% Similarity=0.277 Sum_probs=167.0
Q ss_pred HhhHhhHHHhHHHHHHHhhHHHhhhhhc-ccccccCccchhhhHHHHHHHH-------------------HhhhhHHHHH
Q psy11582 231 SATEQDLSKIRSDLNQSTRQMSGACNGL-VALSAGSSATNAEKDKLVKENS-------------------ELKSQVTVLK 290 (1760)
Q Consensus 231 saTeRdL~~~r~E~~r~sr~l~~ac~~L-s~l~~~~s~~~~qL~ekv~e~~-------------------eLq~rl~el~ 290 (1760)
+++.|-.+.=|.|+-++.-++.--..|- +-|. | |+.++|+ ....-++.-.
T Consensus 151 ~~~grvVStKk~dl~~vv~~f~I~veNP~~~ls--------Q--D~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~ 220 (1074)
T KOG0250|consen 151 SANGRVVSTKKEDLDTVVDHFNIQVENPMFVLS--------Q--DAARSFLANSNPKDKYKLFMKATQLEQITESYSEIM 220 (1074)
T ss_pred hccCccccccHHHHHHHHHHhCcCCCCcchhhc--------H--HHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7788888888888877655433222222 1111 1 3333333 1122344555
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q psy11582 291 SENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQDAEGKDIPSRPAPLKR 370 (1760)
Q Consensus 291 ~~~e~l~~q~~eke~~i~~L~~~l~~LEs~~~~~~~~~~~~~~~~~~~~~lq~~l~dia~~~~~d~~~~~~~~~~~~~~~ 370 (1760)
..+++.+..+..++.+|..+...+...+...+. +.++..+.+ -+++....++-+++.+.+
T Consensus 221 ~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~----~~~~e~~~~---~l~~Lk~k~~W~~V~~~~------------- 280 (1074)
T KOG0250|consen 221 ESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDN----LEQLEDLKE---NLEQLKAKMAWAWVNEVE------------- 280 (1074)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHH-------------
Confidence 667777777778888887776666555544443 122222222 333333444444444432
Q ss_pred CCCCCCCCCCCCCCcchhhhhchhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 371 HATFSARPSTSIKPSVTFRKETKLATH-------REQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREK 443 (1760)
Q Consensus 371 ~~sp~~~~~~~r~~s~a~~~~~KLest-------qe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~ 443 (1760)
..|... ++-+..+.+-+.+......++...+.....++..+....+....++
T Consensus 281 ---------------------~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei 339 (1074)
T KOG0250|consen 281 ---------------------RQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEI 339 (1074)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHH
Confidence 223333 3333333333334334444444444444444455555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhH
Q psy11582 444 EALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGK 523 (1760)
Q Consensus 444 ~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~L 523 (1760)
+.++..+..+.++...++....+....+..+...++.+.+.+..++++. -..+..++.....+++.+....+.+
T Consensus 340 ~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 340 EEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666667777776666666666655555555555555555544444 1555555555556666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHH
Q psy11582 524 EDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRS 584 (1760)
Q Consensus 524 Eek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a 584 (1760)
+.-.++|+.++..+++++....-+.+.++..+..+...+......+.+|..--+.-.+-|.
T Consensus 414 e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 414 EEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 7777888888888888888888888777777777777777666666666555444333333
No 32
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.78 E-value=0.0062 Score=85.97 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q psy11582 1293 DDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLT 1371 (1760)
Q Consensus 1293 dd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~~~ki~~ 1371 (1760)
|++...|..-..+.+.++.++...+..|.+|.+.+...+..-..++....+++..+-.=-...+..+.|++-++..++-
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~~~~ 1141 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAY 1141 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhhhhc
Confidence 4444444444444444444444444444444444444444444444444444444444444444555555554444443
No 33
>PRK01156 chromosome segregation protein; Provisional
Probab=98.78 E-value=0.0049 Score=84.44 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=6.0
Q ss_pred CCChHhHHH
Q psy11582 1268 DVDPEIVRK 1276 (1760)
Q Consensus 1268 d~Dp~~vr~ 1276 (1760)
.+||..+..
T Consensus 837 ~lD~~~~~~ 845 (895)
T PRK01156 837 FLDEDRRTN 845 (895)
T ss_pred cCCHHHHHH
Confidence 567777664
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.74 E-value=0.00052 Score=86.37 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=50.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 577 ERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQL 642 (1760)
Q Consensus 577 ekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqL 642 (1760)
.....+...+++.|-.+...+.+.+.+...|.++++++.+.++..-+.|..+.-+.+++...+...
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~ 344 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA 344 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 445566667777777888888999999999999999999998888888888776666665544433
No 35
>KOG0933|consensus
Probab=98.70 E-value=0.0051 Score=80.42 Aligned_cols=170 Identities=12% Similarity=0.189 Sum_probs=120.9
Q ss_pred HhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhhhhhhhHHHHHHHHHhh
Q psy11582 1445 NLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLH 1524 (1760)
Q Consensus 1445 e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~~~~~~~~l~~lqk~l~ 1524 (1760)
+...++..+....+++..++..|.+|+.+++-|...+.+++..-..+-.+|.....-+.+.......+--.........+
T Consensus 823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~ 902 (1174)
T KOG0933|consen 823 EHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKS 902 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhh
Confidence 34456677788888899999999999999999999999998888888888888887777766656555555556666777
Q ss_pred hchhhhhHHHHhHHHHHHHHHHHHHhhhhh------------------------ccchhhHHHHHHHHHHHHHhhh----
Q psy11582 1525 SAENEKRVLQERLDTCQASLAELRRQQVNR------------------------LENQDDLKAMTQALKREIKDLS---- 1576 (1760)
Q Consensus 1525 ~~e~~~r~LqerL~~~r~~l~e~k~~~~~~------------------------~~~~~~l~~r~q~Lq~~l~d~e---- 1576 (1760)
..+-.+.-|..++....+.-.+.+.-.-+- ..|.-...+++..||.-...++
T Consensus 903 ~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn 982 (1174)
T KOG0933|consen 903 DGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVN 982 (1174)
T ss_pred cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcC
Confidence 777778888877777666555544433210 1122245667777776666666
Q ss_pred ----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy11582 1577 ----DAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAA 1614 (1760)
Q Consensus 1577 ----~~l~q~~~~e~~~~~~~~~lq~e~~~l~~rl~~~~~~~ 1614 (1760)
.++..-...++++..-...+.+.+..++.=|..|+-.+
T Consensus 983 ~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k 1024 (1174)
T KOG0933|consen 983 PKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKK 1024 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56666667777777777777777777777777776666
No 36
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.68 E-value=0.0051 Score=79.21 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy11582 763 ANLCQLQSHIDKICQQHEDALL---RAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTL 822 (1760)
Q Consensus 763 ~e~~~L~~ei~~l~qe~de~ll---~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~el 822 (1760)
...+.|..+|..+...++-+.+ .|+.+.-.+...++.+...+...|.....++..+..++
T Consensus 172 ~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444221 14444334455555556666666666555555555555
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.61 E-value=0.0077 Score=77.59 Aligned_cols=139 Identities=24% Similarity=0.331 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 797 AQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLK 876 (1760)
Q Consensus 797 ~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq 876 (1760)
...|-..|...+..+..+|...+.++.+++.... .....|..|..+|...+.+++.+...-.. ....+..+.
T Consensus 300 ~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~----~a~~~v~~L~~eL~~~r~eLea~~~~e~~----~k~~~~~l~ 371 (522)
T PF05701_consen 300 AKEEASSLRASVESLRSELEKEKEELERLKEREK----EASSEVSSLEAELNKTRSELEAAKAEEEK----AKEAMSELP 371 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHhhHHHHHHHHHHHHHHHHhhhcc----hhhhHHHHH
Confidence 4455556666676677777777777777766432 33457788888888888888655443322 222334444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy11582 877 SEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKD 943 (1760)
Q Consensus 877 ~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~elrr~Ladle~Eke 943 (1760)
..+..+..+.+..+.......+....+..++..+...+...+.++....+++...+..-.-.-.++.
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555566666666666666777777766666666666544433333333
No 38
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.52 E-value=0.011 Score=74.83 Aligned_cols=109 Identities=15% Similarity=0.244 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 840 INTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAEN 919 (1760)
Q Consensus 840 i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee 919 (1760)
|..|.+.-..++..++..+..+......+.-.+..-......+.-++.....++..++.++.+++..+......|.+++.
T Consensus 536 ie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqq 615 (786)
T PF05483_consen 536 IENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQ 615 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444455666666666565555555555555555555666677777777788888888888777766666666655
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy11582 920 VGESLRKDLLDTKTHLADSNFEKDKYAKS 948 (1760)
Q Consensus 920 ~~e~LrkEL~elrr~Ladle~Eke~lq~s 948 (1760)
....+.+.+..--..+......+..+..+
T Consensus 616 eNk~LKKk~~aE~kq~~~~eikVn~L~~E 644 (786)
T PF05483_consen 616 ENKALKKKITAESKQSNVYEIKVNKLQEE 644 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444444443333333
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.43 E-value=0.0028 Score=76.29 Aligned_cols=287 Identities=18% Similarity=0.219 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 398 REQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQL--------AQVGREKEALVKNIEMLRVEKSALEKNKREINE 469 (1760)
Q Consensus 398 qe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l--------~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~ 469 (1760)
+..|..|.|.|...=..++.|+.+-..|..++..+.... ..+..++..++..++.+..++..++..+..+..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 457888899999888888999988888888888776662 223444444444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 470 MVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKE 549 (1760)
Q Consensus 470 eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere 549 (1760)
+++.+...++........++..+..+. ++++-.....-.|+.+...|++||..++..+.. ++.
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lr--------------k~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee---Ei~ 145 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLR--------------KDLDEETLARVDLENQIQSLKEELEFLKQNHEE---EIE 145 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh---hhh
Confidence 444444444444444444444444333 444444444455555555555555554443332 222
Q ss_pred HHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy11582 550 LLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITI-EANDKELQRLQEQLASLRSDKESLEAILFDT 628 (1760)
Q Consensus 550 ~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l-~alEre~~~L~eqla~LrseKesLEs~Lfe~ 628 (1760)
.|..+.. ......--.....+|...+..++.+++..= .+....+ .....++..+.............+...+..+
T Consensus 146 ~L~~~~~-~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~---~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~ 221 (312)
T PF00038_consen 146 ELREQIQ-SSVTVEVDQFRSSDLSAALREIRAQYEEIA---QKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKEL 221 (312)
T ss_dssp TTSTT-----------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccc-cccceeecccccccchhhhhhHHHHHHHHH---hhhhhhhhhhcccccccccccccccccccchhHhHHHHH
Confidence 2222221 011111111234456666666666655331 1111111 1112222222233333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q psy11582 629 QSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEEC 706 (1760)
Q Consensus 629 Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~ 706 (1760)
...+..+..++..|...+..+...+..+...+..-...+...+..++.++..+...++++..+|+. |-+.+.+-+-+
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~-Ll~~K~~Ld~E 298 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE-LLDVKLALDAE 298 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH-HHHHHHhHHHH
Confidence 444444444445555555555555555555555556666666777777777777788888888877 66666665555
No 40
>KOG0964|consensus
Probab=98.34 E-value=0.036 Score=72.61 Aligned_cols=211 Identities=18% Similarity=0.312 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
...+.....+...|.+.++..|++++...+....+..++.+.+..+..+..+...+....-+++++...++..++--...
T Consensus 670 ~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~ 749 (1200)
T KOG0964|consen 670 LKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKE 749 (1200)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH
Confidence 34555566677777788888888888888888888888888888888888888888888888888888888887775555
Q ss_pred HHHHH---HHHHHHHhhHHHHHHHHHHHHHHHhh-HHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 674 AQETK---ASLVQQASGLDADYQNQISNLKKQNE-ECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQ 749 (1760)
Q Consensus 674 ~~~~~---~~l~~ql~q~E~e~q~~L~~~~~ah~-E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~ 749 (1760)
++.-+ ..+..++.--|.+.-.-|-.+...-+ |.+.+|+-. |+.|..+...+...-.. +.-..-.
T Consensus 750 Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~e-----------I~~l~~kl~~~~~er~~-~~~rk~~ 817 (1200)
T KOG0964|consen 750 LEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKE-----------INKLSVKLRALREERID-IETRKTA 817 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44433 34444555555555444433333222 222222222 44444444333322110 1111112
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 750 ITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRES 829 (1760)
Q Consensus 750 l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea 829 (1760)
|+. +|..++...+..|..+|..+.. +..+=.|-...++..++.-++..+..+|++.+..++..+.+.
T Consensus 818 le~---~l~~kL~~r~~~l~~ei~~~~d----------~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~ 884 (1200)
T KOG0964|consen 818 LEA---NLNTKLYKRVNELEQEIGDLND----------SSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEI 884 (1200)
T ss_pred HHH---HHHHHHHhhhhHHHHHhhhccc----------ccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222 3344455555666555544432 222223333444455556667777777777777777777665
No 41
>KOG4673|consensus
Probab=98.31 E-value=0.032 Score=70.52 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy11582 1277 GVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQE----------SNKMAQAQQTMRALQEEKYALETKLSQTKA 1346 (1760)
Q Consensus 1277 ~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~----------~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~ 1346 (1760)
-|--|+-+|.-++-.|+-+-..++.|.-++..+....+.. ..||..+-+...+.-|+--.+..-|.-.++
T Consensus 867 Elthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~ 946 (961)
T KOG4673|consen 867 ELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKE 946 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHH
Confidence 3456788899999999999999999999988887665432 334444444555555555555556666666
Q ss_pred HHHHhHH
Q psy11582 1347 AANSQSE 1353 (1760)
Q Consensus 1347 ~l~~qee 1353 (1760)
++..|-.
T Consensus 947 mYk~QId 953 (961)
T KOG4673|consen 947 MYKEQID 953 (961)
T ss_pred HHHHHHH
Confidence 6666643
No 42
>KOG4643|consensus
Probab=98.26 E-value=0.056 Score=71.14 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 839 TINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKV 891 (1760)
Q Consensus 839 ~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqs 891 (1760)
......+++.+.+..+..........+..|...+..+..+...+..+|..|..
T Consensus 506 rl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 506 RLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444445555555555555555555555444
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.25 E-value=0.0016 Score=75.74 Aligned_cols=217 Identities=10% Similarity=0.115 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy11582 437 AQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAR 516 (1760)
Q Consensus 437 ~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~ 516 (1760)
+.+...+..+...+..........+..+..++..+..++.++++...-+......++.+.....+....+..+.......
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ 90 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSD 90 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333444444444444444445555555555556666666655555555555555555555555554444444444455
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEIT 596 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~ 596 (1760)
..+|..|+......+.-...+-.++..+.-...+++..+......+..++..+.+|+..+..+......+..+..++...
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 55556666665555555555555555555555555555555555555555555555555555544444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 597 IEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQV 660 (1760)
Q Consensus 597 l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el 660 (1760)
....+..+. .|.......+.+...+...+..|+..+..|+.++.........++.++
T Consensus 171 e~~~e~~i~-------~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 171 EDEYEEKIR-------DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 333333333444444444444444444444444444433333333333
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.22 E-value=0.033 Score=67.12 Aligned_cols=89 Identities=20% Similarity=0.343 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 582 DRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDK-ESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQV 660 (1760)
Q Consensus 582 E~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseK-esLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el 660 (1760)
+...|-|-|+.....+-.++.++..|..+|..++..+ ......-......+..+...+..+-.+...+...+.+++.++
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 4445555566667888888888888888888887773 222222233344455555555555555555555555556665
Q ss_pred HHHHHHHHHH
Q psy11582 661 VRLNKELEDT 670 (1760)
Q Consensus 661 ~rL~~ele~~ 670 (1760)
..++..++..
T Consensus 85 ~~~r~k~e~e 94 (312)
T PF00038_consen 85 EDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 45
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.21 E-value=0.0017 Score=75.37 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHH
Q psy11582 450 IEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRR 529 (1760)
Q Consensus 450 le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~ 529 (1760)
++........++..+......+...+.++..+..-+..++..++..+..+......+..+....+-..+.+..|+.+...
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~ 89 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS 89 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333333333333344444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 530 LREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQE 609 (1760)
Q Consensus 530 Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~e 609 (1760)
.-+-+..+...|..+....+.......++...|..++..+...+.-++..-+.+..+...|..+...+.+++-..-...+
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~ 169 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASE 169 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 44444444444444444444444444444444444444444444444444444444444444445555555555555556
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 610 QLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEK 672 (1760)
Q Consensus 610 qla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~ 672 (1760)
....+...+..|...|.++.......+.....|+..+..+...+...+..+..+..+++....
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666665443
No 46
>KOG0994|consensus
Probab=98.16 E-value=0.088 Score=69.78 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHH
Q psy11582 551 LEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSD 585 (1760)
Q Consensus 551 Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~ 585 (1760)
.+........+|+....+. ..+..+++.++.+.+
T Consensus 1315 a~~r~~~s~~~l~s~~~~s-R~e~l~~k~k~~f~~ 1348 (1758)
T KOG0994|consen 1315 AERRVDASSRELASLVDQS-RVEELLVKQKGDFGG 1348 (1758)
T ss_pred HHHhhhhhhhcccchhhhh-HHHHHHHHhhhcccc
Confidence 3444445554555554444 445555555555554
No 47
>KOG0976|consensus
Probab=98.14 E-value=0.077 Score=68.00 Aligned_cols=331 Identities=19% Similarity=0.223 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHH
Q psy11582 454 RVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLRED 533 (1760)
Q Consensus 454 ~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~E 533 (1760)
++....++..+.+++.+|..|+..+..+......||.-+..+++++.+-.. +++-...++..+++..+.-..|
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~et-------elE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEI-------EIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHhhhhHH
Confidence 344444455555555555555554444444444444444444444444333 3344455556666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHH-------------HHHHHHHHH----H---
Q psy11582 534 LLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDR-------------SDMNEQISK----Y--- 593 (1760)
Q Consensus 534 L~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~-------------a~lrdsL~K----m--- 593 (1760)
|-.+-+.|..-...+..++.+...+... +-..+..++..+.+++... +..+..+-+ +
T Consensus 164 If~~~~~L~nk~~~lt~~~~q~~tkl~e---~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~ 240 (1265)
T KOG0976|consen 164 IFMIGEDLHDKNEELNEFNMEFQTKLAE---ANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQ 240 (1265)
T ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776666666665555554443333322 2222333333333333221 111111111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
..-++.+.+.-..+.++...+..--+-++....+..-..+.|..++++.+.-+..+....++++.-..+.-.+.+...+=
T Consensus 241 ~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatky 320 (1265)
T KOG0976|consen 241 KQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKY 320 (1265)
T ss_pred HhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 11222233333333344433333333333333333333444444444444444444444444444333333333332222
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHhhhhhHHHHhhhhcc---HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 674 AQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQN---EECVTKLTEEKEQVRAALEKKLHATVKQI 750 (1760)
Q Consensus 674 ~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~~~~~~~~~~~~~~~~---~~~~~rL~~EKe~~~~~l~~e~~~a~~~l 750 (1760)
+..+.-.++.+ ..+.+.+|..+..-.+-=++|++|+ ++.- ..++.+++.-|+..+..++ .|
T Consensus 321 lh~enmkltrq----kadirc~LlEarrk~egfddk~~eL----EKkrd~al~dvr~i~e~k~nve~elq--------sL 384 (1265)
T KOG0976|consen 321 LHLENMKLTRQ----KADIRCALLEARRKAEGFDDKLNEL----EKKRDMALMDVRSIQEKKENVEEELQ--------SL 384 (1265)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhhcchhHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH--------HH
Confidence 32222222222 2233333333333222222333333 1111 1134444444444433321 11
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11582 751 TEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIK 826 (1760)
Q Consensus 751 ~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~r 826 (1760)
-++-++.+..+++|+.+|-.+.+=+-. .-.+-|+.|.|+ ||+..+-..+.++..+++-.+
T Consensus 385 ----~~l~aerqeQidelKn~if~~e~~~~d-he~~kneL~~a~-----------ekld~mgthl~mad~Q~s~fk 444 (1265)
T KOG0976|consen 385 ----LELQAERQEQIDELKNHIFRLEQGKKD-HEAAKNELQEAL-----------EKLDLMGTHLSMADYQLSNFK 444 (1265)
T ss_pred ----HHHHHHHHHHHHHHHHhhhhhhhccch-hHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHhhHH
Confidence 133344466777777777776654111 012455555554 677777777777777776654
No 48
>KOG4673|consensus
Probab=98.10 E-value=0.08 Score=67.09 Aligned_cols=117 Identities=22% Similarity=0.268 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhH
Q psy11582 758 LSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDR 837 (1760)
Q Consensus 758 ~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er 837 (1760)
...+....++|+....+++.-.|++. .+.|.+=-++ ...+.++-..+-..+.+++..|-+.-+-+..+...=|
T Consensus 539 ~~~sr~~~~~le~~~~a~qat~d~a~----~Dlqk~nrlk---Qdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R 611 (961)
T KOG4673|consen 539 YSNSRALAAALEAQALAEQATNDEAR----SDLQKENRLK---QDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFR 611 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhh----hhHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888833 2222211112 2233344444445555666666655555544444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 838 NTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREA 881 (1760)
Q Consensus 838 ~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~ 881 (1760)
..|..|+--|...-.+.++.....-.-..=|-.+|+.++.-+..
T Consensus 612 ~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~ 655 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSK 655 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhh
Confidence 55555555555544444444444333333334444444444333
No 49
>KOG0977|consensus
Probab=98.08 E-value=0.018 Score=73.14 Aligned_cols=153 Identities=12% Similarity=0.178 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 397 HREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQL-AQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLN 475 (1760)
Q Consensus 397 tqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l-~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le 475 (1760)
=+..|.-|.|.|...=.-++.|+.|-..|.-+++.+.... -+...=...|...+-.+..-.+.....+..+..+|..|.
T Consensus 40 EK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~ 119 (546)
T KOG0977|consen 40 EKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLR 119 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3567889999999999999999999999998888887764 111222444555666677777777777888888888888
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 476 SNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKE 549 (1760)
Q Consensus 476 ~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere 549 (1760)
.++..++..+.+.++......+.+.+...-+...+.++.....++..+++....|+.|...++..|..+..++|
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888777765443
No 50
>KOG4643|consensus
Probab=98.05 E-value=0.13 Score=67.81 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 598 EANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNK 665 (1760)
Q Consensus 598 ~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ 665 (1760)
..++.+|-.+.+++++++.+.+...+.+.++. .+++.+....+.|.+.+..++.
T Consensus 297 ~tleseiiqlkqkl~dm~~erdtdr~kteeL~--------------eEnstLq~q~eqL~~~~ellq~ 350 (1195)
T KOG4643|consen 297 ATLESEIIQLKQKLDDMRSERDTDRHKTEELH--------------EENSTLQVQKEQLDGQMELLQI 350 (1195)
T ss_pred CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhHhhh
Confidence 44555555555666666665555555444444 4444444444555555444443
No 51
>KOG0977|consensus
Probab=98.00 E-value=0.02 Score=72.58 Aligned_cols=138 Identities=18% Similarity=0.290 Sum_probs=102.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 520 LRGKEDMNRRLREDLLIANEDLKNA-KLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIE 598 (1760)
Q Consensus 520 L~~LEek~S~Lr~EL~~lrE~L~~~-~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~ 598 (1760)
.++||..++.|.-+|..++.....- .-=+..++.++..+...+....+..+.++.++.+++.++++++.-+.+.
T Consensus 58 VR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~----- 132 (546)
T KOG0977|consen 58 VRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA----- 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----
Confidence 4899999999999999999887654 3335677888888888888888888888888888888888775555443
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 599 ANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTE 671 (1760)
Q Consensus 599 alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~ 671 (1760)
.+.+...+..++.....|.+++..+..+-..+..++.++..+......+..+|.++++.++.+.
T Consensus 133 ---------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 133 ---------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred ---------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666666777777777777777777777777777777777655
No 52
>KOG0978|consensus
Probab=97.93 E-value=0.2 Score=65.49 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhH
Q psy11582 982 GDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKD 1061 (1760)
Q Consensus 982 l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e 1061 (1760)
+...+..+.+....+...+..+......+......+..++..+...+....---.. +...+..|+-+
T Consensus 508 l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e-------------~~~~~~~Lq~~ 574 (698)
T KOG0978|consen 508 LEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQE-------------AKQSLEDLQIE 574 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554444432111111 44445555555
Q ss_pred HhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q psy11582 1062 RSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLV 1108 (1760)
Q Consensus 1062 ~~el~~~l~~l~r~~~~~~~EL~~lr~kl~~~~e~~r~~~r~lee~~ 1108 (1760)
.....+.+..+......+..||+-.+.+...--+++..+.++++...
T Consensus 575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555555666666666665555555555555555555
No 53
>KOG0978|consensus
Probab=97.93 E-value=0.2 Score=65.44 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH---
Q psy11582 425 LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLF--- 501 (1760)
Q Consensus 425 Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~e--- 501 (1760)
|..++..+....+.+......+...+..+-......+....++..+++.+..++++.+.....+.+.+....+....
T Consensus 53 L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~ 132 (698)
T KOG0978|consen 53 LAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN 132 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 44444444444444444444444455555555555566666666666666666666666666666666555544433
Q ss_pred ----HHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 502 ----LQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQ 553 (1760)
Q Consensus 502 ----l~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leq 553 (1760)
+-..+--...+...+...|..+-.-.+....+|.+++..+-.+.-+.+.+..
T Consensus 133 ~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~ 188 (698)
T KOG0978|consen 133 GNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRV 188 (698)
T ss_pred cccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111123444444445554444555555555555444444444444433
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.92 E-value=0.21 Score=65.38 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=100.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEM----LRVEKSALEKNKREI 467 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~----L~~Ek~~Le~~r~eL 467 (1760)
-++..+...+..+...+..++..+..+...+..|...-..-...+..+...|+.+++.+-. .+.-...|+..+..+
T Consensus 98 ~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~ 177 (569)
T PRK04778 98 FRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENL 177 (569)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 5677888888888888888888877777777775555555555555555555555554433 111122222222222
Q ss_pred HHH-------------------HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---------HHHH
Q psy11582 468 NEM-------------------VESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDA---------REVE 519 (1760)
Q Consensus 468 ~~e-------------------ve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~---------~q~~ 519 (1760)
... +..+......+...+...=.-+..++..+-....++..+-+++.. ....
T Consensus 178 e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~ 257 (569)
T PRK04778 178 EEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKE 257 (569)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHH
Confidence 222 222222222222222222222222233332333333322222221 2233
Q ss_pred HhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHH
Q psy11582 520 LRGKEDMNRRLR-----EDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYE 594 (1760)
Q Consensus 520 L~~LEek~S~Lr-----~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~ 594 (1760)
+..+.+...... -+|..+.+.+..+.-.+|.|-......-.|-..++.....+...++.++.....+...++.+.
T Consensus 258 i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 258 IQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333311 144555666666666666666666666666666666666666666666666666666665553
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.90 E-value=0.22 Score=65.24 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 602 KELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKE 666 (1760)
Q Consensus 602 re~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~e 666 (1760)
.++..+.+-...|.+++-.|.+.|.--++-...+..++.+++..+..+...++.-..++..|...
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333334444445455555555555555555555555555555555555444444444443
No 56
>KOG0995|consensus
Probab=97.89 E-value=0.18 Score=63.77 Aligned_cols=245 Identities=16% Similarity=0.225 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy11582 404 MKKQYESADESQYNMSQQVTS---LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDK 480 (1760)
Q Consensus 404 LrdqL~EvE~e~r~Le~Qaqk---Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ek 480 (1760)
+-..++.+++..+.|+.+++. .......+.....++..++..+++-...+...+..+++.+..+..+++.-+.+++.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555443 33444555555666777888888888888888888999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11582 481 VQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQT 560 (1760)
Q Consensus 481 Lk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~ 560 (1760)
++..+.+|..+++.. .--..+..+...|++-+.+.+.-+.....+|.+++=..+-.+..
T Consensus 313 lq~~~d~Lk~~Ie~Q----~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~----------------- 371 (581)
T KOG0995|consen 313 LQKENDELKKQIELQ----GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED----------------- 371 (581)
T ss_pred HHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------------
Confidence 999888888887654 12222333333333333333333333333333332222221111
Q ss_pred HHHHHHHhHhhHHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11582 561 LLAHIEKSKGDVEAEMERLLLD------------------RSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLE 622 (1760)
Q Consensus 561 aL~~aE~slaeLE~elekLrsE------------------~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLE 622 (1760)
-+..++....++...+.++..- ..++++.+ .+.+..+-..+. .++.....++..|+
T Consensus 372 ~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V---~~~l~el~~ei~---~~~~~~~~~~~tLq 445 (581)
T KOG0995|consen 372 FFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYV---KPLLKELLDEIS---EELHEAENELETLQ 445 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHh---HHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 1222222233333333333222 22333332 444444444444 66666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 623 AILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQ 675 (1760)
Q Consensus 623 s~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~ 675 (1760)
..+-.....++-+......++-++..+...-+-.+.+-+.....-..+..++.
T Consensus 446 ~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le 498 (581)
T KOG0995|consen 446 EHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLE 498 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665556666655555555554444444444333333333333
No 57
>PF13514 AAA_27: AAA domain
Probab=97.87 E-value=0.43 Score=67.32 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy11582 722 EECVTKLTEEKEQVRAA 738 (1760)
Q Consensus 722 ~~~~~rL~~EKe~~~~~ 738 (1760)
.+++.......+..|..
T Consensus 501 ~~~l~~aR~~Rd~~W~~ 517 (1111)
T PF13514_consen 501 EEELAAARARRDAAWQL 517 (1111)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44588888888888865
No 58
>KOG0018|consensus
Probab=97.85 E-value=0.31 Score=65.25 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=90.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy11582 514 DAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY 593 (1760)
Q Consensus 514 e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km 593 (1760)
=..+..++-+-+..+++..++..+....+....++.+...+.......+......+.+.+..+.+ +-+.=......+.+
T Consensus 223 fhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~ 301 (1141)
T KOG0018|consen 223 FHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHL 301 (1141)
T ss_pred hhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccc
Confidence 33567778888999999999999999999999999999888888888888888888888888887 44444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLV 651 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~ 651 (1760)
...+...++.+.............. .....++..++..++.++++.+...+
T Consensus 302 k~rl~~~~k~i~~~kk~~~~~~~~i-------e~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 302 KKRLEEIEKDIETAKKDYRALKETI-------ERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555544444444444 44444455566666666666666555
No 59
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.85 E-value=0.43 Score=66.81 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=21.8
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 779 HEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLK 813 (1760)
Q Consensus 779 ~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~ 813 (1760)
+-.+.+-.-.+--.-|.....||..++++|-.+..
T Consensus 147 F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~ 181 (1047)
T PRK10246 147 FTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEI 181 (1047)
T ss_pred hhhheeeccccHHHHHhCChHHHHHHHHHHhCcHH
Confidence 44444445555444555677788888888876553
No 60
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.41 Score=66.14 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=9.2
Q ss_pred CCCChHhHHHHH
Q psy11582 1267 IDVDPEIVRKGV 1278 (1760)
Q Consensus 1267 ~d~Dp~~vr~~l 1278 (1760)
+.+||+.++..+
T Consensus 852 ~~LD~e~l~~l~ 863 (908)
T COG0419 852 GTLDEERLEKLA 863 (908)
T ss_pred CCCCHHHHHHHH
Confidence 478999887665
No 61
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.81 E-value=0.28 Score=63.35 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 797 AQQDQKAIQDRLSQVLKELEEEKCTLDRIKRES 829 (1760)
Q Consensus 797 ~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea 829 (1760)
...|...|.+-|+.++.+|..--..++++|+-.
T Consensus 195 ~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 195 AQREADLLREQLSKTQEELEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555444455555443
No 62
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.76 E-value=7.2e-05 Score=99.51 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDK 618 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseK 618 (1760)
...+..+++.+..+..++..|+.-+
T Consensus 256 l~~i~~LE~en~~l~~Elk~Lr~~~ 280 (722)
T PF05557_consen 256 LAHIRELEKENRRLREELKHLRQSQ 280 (722)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655543
No 63
>PRK11637 AmiB activator; Provisional
Probab=97.75 E-value=0.024 Score=71.47 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11582 463 NKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQ 503 (1760)
Q Consensus 463 ~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~ 503 (1760)
.+..++.++..++.++..++..+.+++..++..++.+..+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444443333
No 64
>PF13514 AAA_27: AAA domain
Probab=97.75 E-value=0.63 Score=65.68 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSL---------TSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEK 462 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkL---------k~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~ 462 (1760)
.++......+..+...+......+..+..++..+ ...++.+ ......|......+..+..+...+..
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L----~~~~~~~~~~~~dl~~~~~e~~~~~~ 317 (1111)
T PF13514_consen 242 ERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEAL----EEQRGEYRKARQDLPRLEAELAELEA 317 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888887777662 2222222 22334444444455555555555544
Q ss_pred HHHHHHHHHH
Q psy11582 463 NKREINEMVE 472 (1760)
Q Consensus 463 ~r~eL~~eve 472 (1760)
.+..+...+.
T Consensus 318 ~~~~~~~~lg 327 (1111)
T PF13514_consen 318 ELRALLAQLG 327 (1111)
T ss_pred HHHHHHHhcC
Confidence 4444444433
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.72 E-value=0.41 Score=62.78 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHH
Q psy11582 760 RLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNT 839 (1760)
Q Consensus 760 ~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~ 839 (1760)
......+.+.+.|..|..-.+. |-. |--..+.....+.+.|..+......+..++++++... .-.+.+-..
T Consensus 279 ~~~~~~~~i~~~Id~Lyd~lek-----E~~---A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY-~l~~~e~~~ 349 (569)
T PRK04778 279 EAEEKNEEIQERIDQLYDILER-----EVK---ARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSY-TLNESELES 349 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCchhHHH
Confidence 3355666677777777666444 222 3333455567789999999999999999999998886 344666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 840 INTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQ 892 (1760)
Q Consensus 840 i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsq 892 (1760)
+..+..++..+...+...... +......+..+...+..+...++.+...
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~----i~~~~~~ysel~e~leel~e~leeie~e 398 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITER----IAEQEIAYSELQEELEEILKQLEEIEKE 398 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777644332 2222222344444444444444444444
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.71 E-value=0.42 Score=62.72 Aligned_cols=132 Identities=12% Similarity=0.193 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 528 RRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRL 607 (1760)
Q Consensus 528 S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L 607 (1760)
.+|...+.+.+..++.+--+.-.|.+++.++..++..+...+.++...+.--.--...+...|..+...+..+...+..-
T Consensus 142 ~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 142 QKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555556666666666666666666666666666666665555444444444444444444444444444433
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 608 QEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQ 659 (1760)
Q Consensus 608 ~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~e 659 (1760)
..++..+..+.+.+-.-|......-.++-.+++.|-+++--...-.+.++.+
T Consensus 222 ~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~e 273 (617)
T PF15070_consen 222 SQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHE 273 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444344444455555554443333333444333
No 67
>KOG0964|consensus
Probab=97.67 E-value=0.51 Score=62.55 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHH
Q psy11582 450 IEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRR 529 (1760)
Q Consensus 450 le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~ 529 (1760)
+.....+...+...+.+|...+..|..+.+.++..-++.-+..-.++=+..+++.+|..........-..+..++++...
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e 339 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEE 339 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 530 LREDLLIANEDLKNAKLAKELLEQN 554 (1760)
Q Consensus 530 Lr~EL~~lrE~L~~~~Lere~Leqe 554 (1760)
-+.||..+.=+.+.+..+-+.+...
T Consensus 340 ~~~EL~~I~Pky~~l~~ee~~~~~r 364 (1200)
T KOG0964|consen 340 KKDELSKIEPKYNSLVDEEKRLKKR 364 (1200)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 5555555555555554444444333
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.66 E-value=0.022 Score=74.01 Aligned_cols=30 Identities=7% Similarity=0.194 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 404 MKKQYESADESQYNMSQQVTSLTSQLDQTK 433 (1760)
Q Consensus 404 LrdqL~EvE~e~r~Le~QaqkLk~El~~l~ 433 (1760)
+.+.+.+++.+...+..++..+..++..+.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~ 201 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYN 201 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.64 E-value=0.077 Score=69.00 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 584 SDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEV 646 (1760)
Q Consensus 584 a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~ 646 (1760)
..++..+......+..+.+++..+..++..+......++..|..+...+..+...+..++++.
T Consensus 340 ~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 340 LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444444444444444444444443
No 70
>KOG1029|consensus
Probab=97.61 E-value=0.37 Score=62.20 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHHHHH-HHHhhccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 798 QQDQKAIQDRLSQVLKELEEE-KCTLDRIK-RESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDL 875 (1760)
Q Consensus 798 e~Ek~~L~ekL~~~q~eL~~a-~~eler~r-rea~~~~e~er~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeL 875 (1760)
|.|+.-=+++-....+||+.- +.+.||.| +++.++..+++..|--+.+-...+.-+++ ++.-.+..|...+.+.
T Consensus 388 EEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~ele----tLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 388 EEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELE----TLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhh
Confidence 334444455555555555443 44566664 36667777777766665444444444443 3334444555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11582 876 KSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLAD 937 (1760)
Q Consensus 876 q~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~elrr~Lad 937 (1760)
.-.+.....+|+.+..+ ++....++..++.+|+++++.+..+.-|-..+...+..
T Consensus 464 r~~~tt~kt~ie~~~~q-------~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 464 RVDITTQKTEIEEVTKQ-------RELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred eeccchHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55555555556655555 44445555555555555555555555554444444433
No 71
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.60 E-value=0.51 Score=60.69 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHH
Q psy11582 454 RVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLRED 533 (1760)
Q Consensus 454 ~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~E 533 (1760)
.++...-+..+++-..-|+..+.-+..|+-.|..+--.+..--.+-.++..+....+.-=.++-..-....+|....-.|
T Consensus 98 esd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~E 177 (786)
T PF05483_consen 98 ESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEYE 177 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666677777777777777777777666666666666666666555544444444444444444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 534 LLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLAS 613 (1760)
Q Consensus 534 L~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~ 613 (1760)
-...+.-+-.....++.+ ...+...=..++.+..+.-..|-+-...++++.+.. ...+...+++...|.-++..
T Consensus 178 REET~qly~~l~~niekM---i~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey---~~E~n~kEkqvs~L~~q~~e 251 (786)
T PF05483_consen 178 REETRQLYMDLNENIEKM---IAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEY---KKEVNDKEKQVSLLQTQLKE 251 (786)
T ss_pred HHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHh
Confidence 222222222222222222 222222222344444444333333334444443333 55566666666666666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 614 LRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVR 662 (1760)
Q Consensus 614 LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~r 662 (1760)
-......+--.|.+++..+.+++........-+.......+.+..++..
T Consensus 252 Ken~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~ 300 (786)
T PF05483_consen 252 KENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELED 300 (786)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 6666666666666677777776666555555555555555555555553
No 72
>KOG0933|consensus
Probab=97.60 E-value=0.65 Score=61.92 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHH---hhhhhhhhhhhh-hhHHHHHHHHHhHHhhHHHHHHH-HHh
Q psy11582 1000 VASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKE---KYNFVISYLLCL-FQVEVELSQVTKDRSDLSHQLSL-LQR 1074 (1760)
Q Consensus 1000 ~~elr~eLqeLeqE~~elesEl~eLq~rL~~lE~e~e---~~~~~~~~~~~~-~~l~~El~~L~~e~~el~~~l~~-l~r 1074 (1760)
+..+..++..++.+.......+..+.....-+..++. +.|-..-|.++= .+.+.++..|+.....+....+- .-.
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~ 987 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMD 987 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHH
Confidence 3334444444555555555555555555555443332 112122222221 12667777777777777554433 112
Q ss_pred hhhhhHHHHHHHHHHH---HHHHHHHHHhHHhhHHHH
Q psy11582 1075 KKENVVEDLARLKQKY---EQSVEMNNRVNKNLEDLV 1108 (1760)
Q Consensus 1075 ~~~~~~~EL~~lr~kl---~~~~e~~r~~~r~lee~~ 1108 (1760)
-++.++.....++.+. +..-.+...+-.++.+..
T Consensus 988 mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k 1024 (1174)
T KOG0933|consen 988 MLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKK 1024 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2334444444443333 333344444444444444
No 73
>KOG0995|consensus
Probab=97.50 E-value=0.63 Score=59.16 Aligned_cols=139 Identities=16% Similarity=0.300 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
.+...+...-.+++.++..|.++..++...+ ..-.+++.|+++.+.|+.+....+.-.+
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~e------------------k~~~~~eslre~~~~L~~D~nK~~~y~~--- 283 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINERE------------------KDPGKEESLREKKARLQDDVNKFQAYVS--- 283 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCcchHHHHHHHHHHHHhHHHHHHHHHH---
Confidence 4555555566666677766666666655222 2233344444444444444433333332
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11582 546 LAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY---EITIEANDKELQRLQEQLASLRSDKESLE 622 (1760)
Q Consensus 546 Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km---~v~l~alEre~~~L~eqla~LrseKesLE 622 (1760)
-+.+......+.|+.+...+..-+.+++.++.+.++|+..+.+- ...++..-.++..+...++.+.++++.|.
T Consensus 284 ----~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 284 ----QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred ----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555566666666666666666666666555 44444555555566666666666666666
Q ss_pred HHHHHHH
Q psy11582 623 AILFDTQ 629 (1760)
Q Consensus 623 s~Lfe~Q 629 (1760)
+.+++..
T Consensus 360 k~vw~~~ 366 (581)
T KOG0995|consen 360 KEVWELK 366 (581)
T ss_pred HHHHhHH
Confidence 6666543
No 74
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.43 E-value=0.49 Score=56.27 Aligned_cols=94 Identities=16% Similarity=0.309 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 393 KLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVE 472 (1760)
Q Consensus 393 KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve 472 (1760)
++..-..-..-++..+.+..+-+..|..++..+..+++.+...+-.+...++.++...+.+..+...+...+.+++..+.
T Consensus 7 ~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 7 KLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556677778888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhH
Q psy11582 473 SLNSNLDKVQKNNS 486 (1760)
Q Consensus 473 ~Le~e~ekLk~~~~ 486 (1760)
.|-.++..++....
T Consensus 87 eL~~~~~~l~e~~~ 100 (294)
T COG1340 87 ELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988888777
No 75
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.42 E-value=1.1 Score=60.07 Aligned_cols=171 Identities=21% Similarity=0.258 Sum_probs=115.5
Q ss_pred cchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhhccchhhHHHHHHhhchHHHHhHHhHHHHHHHh
Q psy11582 1378 NVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQC 1457 (1760)
Q Consensus 1378 ~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~rr~legelqR~~l~l~~~E~e~q~l~er~~~l~ 1457 (1760)
+.......+.+++.++.+.-..++.+.-...+.++..-.+.-.+|.....|.++|.-++-.-+-.|+++....+....+.
T Consensus 586 a~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le 665 (769)
T PF05911_consen 586 ADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLE 665 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666777777877777777777777777788777888888888888888888777777777888877777777777
Q ss_pred hhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhhhhhhhHHHHHHHHHhhh---chhhhhHHH
Q psy11582 1458 RNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHS---AENEKRVLQ 1534 (1760)
Q Consensus 1458 ~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~~~~~~~~l~~lqk~l~~---~e~~~r~Lq 1534 (1760)
.++.+.+.....|..-+..|...|.+--..=. +..+-+..++++|...-+.... ++.+..+-+
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~--------------e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kq 731 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKERALSE--------------ELEAKCRELEEELERMKKEESLQQLANEDKKIKQ 731 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcch--------------hhhhHHHHHHHHHHhhhcccchhhccccccccch
Confidence 77777666666666666666555544322222 2222244444444444332221 156677777
Q ss_pred H-hHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH
Q psy11582 1535 E-RLDTCQASLAELRRQQVNRLENQDDLKAMTQALK 1569 (1760)
Q Consensus 1535 e-rL~~~r~~l~e~k~~~~~~~~~~~~l~~r~q~Lq 1569 (1760)
+ .|.+|=.-|+|...... .|.-++++|.
T Consensus 732 e~EiaaAA~KLAECQeTI~-------sLGkQLksLa 760 (769)
T PF05911_consen 732 EKEIAAAAEKLAECQETIA-------SLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhcC
Confidence 7 77777777888888888 7877777775
No 76
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.40 E-value=0.0004 Score=92.58 Aligned_cols=131 Identities=24% Similarity=0.360 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhH
Q psy11582 1280 NLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKN 1359 (1760)
Q Consensus 1280 ~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~ 1359 (1760)
.+=.++.=+-+|||-+|.+|.++......+... +....++..+...+..++..+..++..+......+..+.......+
T Consensus 403 RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~ 481 (722)
T PF05557_consen 403 RLERQKALATKERDYLRAQLKSYDKEETTMNPS-EQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLE 481 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc-hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 333444456788888888888887765544322 2334666777787888888888888888888888888877767777
Q ss_pred HHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhh
Q psy11582 1360 EELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARV 1418 (1760)
Q Consensus 1360 ~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~ 1418 (1760)
.+...++.....-+.++.....+...|+.++. .|+.+...|+..+...+.+.
T Consensus 482 ~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~-------~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 482 AELKSLKEQLSSNDRSLSSLSEELNELQKEIE-------ELERENERLRQELEELESEL 533 (722)
T ss_dssp ------------HHCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccchhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 77777776665554444444444444444444 45555555555544444443
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.36 E-value=0.18 Score=66.95 Aligned_cols=227 Identities=16% Similarity=0.205 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH
Q psy11582 416 YNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESL 495 (1760)
Q Consensus 416 r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~l 495 (1760)
..|+.-+++|+.++......=.++...+..+...-..+..+...+......|+..+-.|....+.-+..+..+++.+...
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777776666666666666666665667777777777777888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11582 496 QSEKLFLQNELDRINSDMDAREVELRGKEDMNRRL--------REDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEK 567 (1760)
Q Consensus 496 eeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~L--------r~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~ 567 (1760)
++.+..++.++..-++.+..-+ ++..+- -+--+..|.+...++. |...+...|...|.
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee-------~~aar~~~~~~~~r~e~~e~~r~r~~~lE~-------E~~~lr~elk~kee 566 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEE-------EKAARALAQAQATRQECAESCRQRRRQLES-------ELKKLRRELKQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH-------HhhhhccccchhccchhHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 7777777777633322222111 110000 0111123333333333 33333333334444
Q ss_pred hHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 568 SKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQ 647 (1760)
Q Consensus 568 slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q 647 (1760)
.+..++.++..++.-..+-....+-+...+.+++.+...|++-|+.=--=|-.|=+.|=++..+++..+..+-.-+.|+.
T Consensus 567 ~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~ 646 (697)
T PF09726_consen 567 QIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIE 646 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333211122234444666667777777777766555555666666677777777666666666666666
Q ss_pred HHHHHHHHH
Q psy11582 648 ELLVKQESL 656 (1760)
Q Consensus 648 ~l~~~~E~L 656 (1760)
++..++..+
T Consensus 647 ~lk~ki~~~ 655 (697)
T PF09726_consen 647 ELKAKIAQL 655 (697)
T ss_pred HHHHHHHHH
Confidence 665555443
No 78
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.35 E-value=1.3 Score=59.40 Aligned_cols=244 Identities=22% Similarity=0.248 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 394 LATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVES 473 (1760)
Q Consensus 394 Lestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~ 473 (1760)
-+-++.-+..|+.+|+.+-...-+++.++.-|-+-++.+-.++-.+.-+ .-+.-.+.+-..-...++.+.+|+..+..
T Consensus 19 wekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree--~eq~i~~~~~~~s~e~e~~~~~le~~l~e 96 (769)
T PF05911_consen 19 WEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREE--QEQKIHEAVAKKSKEWEKIKSELEAKLAE 96 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3557777888888998888888888888887777777666666222222 22223344455556677778888999999
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 474 LNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQ 553 (1760)
Q Consensus 474 Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leq 553 (1760)
+...+.+....|.-+-+.+.....-..++......+..++..+..+|+..|..++.|+=|+-.+.+.|.--..+++.-.+
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~ 176 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR 176 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999998888888899999999999999999999999999999999999998888777777776543
Q ss_pred hHHHHHHHHHHHHHhHhhHHHHHHHHHh----------HHHHHHHHHHHH------------------------------
Q psy11582 554 NKEEMQTLLAHIEKSKGDVEAEMERLLL----------DRSDMNEQISKY------------------------------ 593 (1760)
Q Consensus 554 ek~el~~aL~~aE~slaeLE~elekLrs----------E~a~lrdsL~Km------------------------------ 593 (1760)
--+-....--.--+.++.|+.+=.+||. -.+.++.+++-+
T Consensus 177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~ 256 (769)
T PF05911_consen 177 AAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKR 256 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccc
Confidence 3222222222222445555555555442 222333333333
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 -------EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKK 639 (1760)
Q Consensus 594 -------~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ek 639 (1760)
.+++.+++.++..|-+=++.-.++...--.-+-++-..+.+++...
T Consensus 257 ~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 257 SKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666555555544444444444444444
No 79
>KOG1029|consensus
Probab=97.35 E-value=1.1 Score=58.26 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 526 MNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ 605 (1760)
Q Consensus 526 k~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~ 605 (1760)
..-+-++.++-++.+...+..+.+-|.-.+.. +...+.|....+...+.+++.++...+-|..++..+...++
T Consensus 424 Qk~reqe~iv~~nak~~ql~~eletLn~k~qq-------ls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 424 QKNREQEWIVYLNAKKKQLQQELETLNFKLQQ-------LSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344556666666666666666665444444 44456666677777788888888888888888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 606 RLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELE 668 (1760)
Q Consensus 606 ~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele 668 (1760)
.+++.+-.|--++..|...|...|.....-..+++.|+.....-..-+..++-.+..+.++.+
T Consensus 497 E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~e 559 (1118)
T KOG1029|consen 497 ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETE 559 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888988888888766666666666666655555555555555544444443
No 80
>PRK11637 AmiB activator; Provisional
Probab=97.34 E-value=0.35 Score=61.18 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=5.8
Q ss_pred HHHHHHHhhHHHHHHH
Q psy11582 609 EQLASLRSDKESLEAI 624 (1760)
Q Consensus 609 eqla~LrseKesLEs~ 624 (1760)
..++.+..++..|+..
T Consensus 198 ~~~~e~~~~k~~L~~~ 213 (428)
T PRK11637 198 TLLYEQQAQQQKLEQA 213 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 81
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.2 Score=66.64 Aligned_cols=107 Identities=24% Similarity=0.277 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHH
Q psy11582 989 LRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQ 1068 (1760)
Q Consensus 989 LrnqLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~ 1068 (1760)
++...++++.++..++.++...+..+..++.++.++..-...-+...+. |-..|..++.+-..|++.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~-------------L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEV-------------LMSALSAMQDKNQHLENS 609 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-------------HHHHHHHHHHHHHHHHHh
Confidence 6677777888888888888877777777777776555432111222333 777788888888888988
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q psy11582 1069 LSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLV 1108 (1760)
Q Consensus 1069 l~~l~r~~~~~~~EL~~lr~kl~~~~e~~r~~~r~lee~~ 1108 (1760)
|++=.|=|-.+=.-|+.+++.++-....++.-++.+.|++
T Consensus 610 LsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 610 LSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776777777777777777766666666666666666
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.96 E-value=1.7 Score=54.20 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=51.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKN 463 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~ 463 (1760)
.+|+.++.++..+.+-+.++......|+.++++++.++..+..++-+...+++.+...+..++..++.++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 788888888888888888888888888888888888887777777555555555555555554444444433
No 83
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.95 E-value=0.00052 Score=91.39 Aligned_cols=49 Identities=35% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 625 LFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 625 Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
+..++..+......+..|+.++......+..++.+++.+++.+..+-.+
T Consensus 483 ~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~ 531 (713)
T PF05622_consen 483 LEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSK 531 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344455555555566677777766666667777776666655444333
No 84
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.87 E-value=5.3 Score=57.73 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=10.6
Q ss_pred CCCChHhHHHHHHHH
Q psy11582 1267 IDVDPEIVRKGVRNL 1281 (1760)
Q Consensus 1267 ~d~Dp~~vr~~lr~l 1281 (1760)
+.|.|+.|...|..+
T Consensus 680 ~~~~~~~v~~~L~~i 694 (1353)
T TIGR02680 680 PEVDPAAVTRVLEGI 694 (1353)
T ss_pred ccCcHHHHHHHHhhc
Confidence 466777887777665
No 85
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.81 E-value=3.1 Score=54.29 Aligned_cols=356 Identities=16% Similarity=0.170 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHH
Q psy11582 448 KNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLS---KINESLQSEKLFLQNELDRINSDMDAREVELRGKE 524 (1760)
Q Consensus 448 ~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLq---rq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LE 524 (1760)
..+.....+.+.|.+.+...+..++....-++.|++-+.+.- .....++.++..+...+.....|++.++-.++-|.
T Consensus 190 ~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLq 269 (739)
T PF07111_consen 190 KELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQ 269 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555566666665542 33445677778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHH
Q psy11582 525 DMNRRLREDLLIANEDLKN------------AKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISK 592 (1760)
Q Consensus 525 ek~S~Lr~EL~~lrE~L~~------------~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~K 592 (1760)
-+...|..=|.--.+.|-. ...-.-+|.-=++.+=..+-.+...-.++...+.+++..++.+...+..
T Consensus 270 VRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~s 349 (739)
T PF07111_consen 270 VRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVAS 349 (739)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 8888765444333333321 1111233433344444555566777777778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 593 YEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEK 672 (1760)
Q Consensus 593 m~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~ 672 (1760)
-..+...+.+.+++=+-++..=|.....|...|..++.....+.....-.+..+..+...+-..+.-+..--..++...+
T Consensus 350 q~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~a 429 (739)
T PF07111_consen 350 QQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALA 429 (739)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777775555555556666677777777776666655555555555555544444444332222222222211
Q ss_pred HHH----------HHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHH
Q psy11582 673 RAQ----------ETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKK 742 (1760)
Q Consensus 673 ~~~----------~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e 742 (1760)
++. ..+.++.-.++.--.=++...+..-.+. =.+|.| .-++..|..|. ..+..+
T Consensus 430 RL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~p-p~~~dL-----------~~ELqqLReER----dRl~ae 493 (739)
T PF07111_consen 430 RLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSP-PSVTDL-----------SLELQQLREER----DRLDAE 493 (739)
T ss_pred HHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCC-CchhhH-----------HHHHHHHHHHH----HHHHHH
Confidence 111 1111111111111111111111100000 000001 11244444443 344444
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy11582 743 LHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTL 822 (1760)
Q Consensus 743 ~~~a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~el 822 (1760)
++-..+=+.++.-+-.-+..+++..|.+....|.+.... +...-..+-+.|..+.+.+.....+.
T Consensus 494 LqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~---------------~qe~la~l~~QL~~Ar~~lqes~eea 558 (739)
T PF07111_consen 494 LQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQE---------------KQESLAELEEQLEAARKSLQESTEEA 558 (739)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444554444445566666666666555554333 33334566777888888888888888
Q ss_pred HHHHHHHhhccH
Q psy11582 823 DRIKRESAGRSE 834 (1760)
Q Consensus 823 er~rrea~~~~e 834 (1760)
..++++...+++
T Consensus 559 ~~lR~EL~~QQ~ 570 (739)
T PF07111_consen 559 AELRRELTQQQE 570 (739)
T ss_pred HHHHHHHHHHHH
Confidence 888888876663
No 86
>KOG0999|consensus
Probab=96.80 E-value=2.6 Score=53.16 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH
Q psy11582 419 SQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESL 495 (1760)
Q Consensus 419 e~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~l 495 (1760)
+..+++|+.++.-+...+++...+.-..-.--=.+-.+|..|+....+++..++....+++.++.++.+..-+-...
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~ 83 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKV 83 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666555555443332222335678888889999999999999999999988888776554443
No 87
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.72 E-value=1.5 Score=49.27 Aligned_cols=178 Identities=17% Similarity=0.221 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
+|...|+.|+..-.+|...|..+++.+..+++--..+..++..+...+... .++-.+.+.+.+||..++.-+..+.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~----Qqal~~aK~l~eEledLk~~~~~lE 80 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL----QQALQKAKALEEELEDLKTLAKSLE 80 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666777777777776666666555555554444444433 3555566677777777777776666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 546 LAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAIL 625 (1760)
Q Consensus 546 Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~L 625 (1760)
-+...|-.+ ...++.+-..|-++...+++.-.++.+...-+.++...|..+.+.|..++-..++-+
T Consensus 81 E~~~~L~aq--------------~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~ 146 (193)
T PF14662_consen 81 EENRSLLAQ--------------ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLI 146 (193)
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 665555322 233444444555555556555556666666666666655554444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 626 FDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVV 661 (1760)
Q Consensus 626 fe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~ 661 (1760)
......+.......+.|..-+.++..-.+.++.++.
T Consensus 147 ~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s 182 (193)
T PF14662_consen 147 CQRDAILSERTQQIEELKKTIEEYRSITEELRLEKS 182 (193)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444433
No 88
>KOG0980|consensus
Probab=96.70 E-value=4.1 Score=54.17 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11582 169 LTNDLEKLTTDWTHLREEMAMK 190 (1760)
Q Consensus 169 L~~dl~klt~dw~~~r~EL~~K 190 (1760)
|..+...+-.++.++ |..|
T Consensus 98 ls~~Yg~lI~~Y~kl---L~~K 116 (980)
T KOG0980|consen 98 LSDGYGPLIRAYVKL---LHDK 116 (980)
T ss_pred ccccchHHHHHHHHH---HHHH
Confidence 666777777777766 5554
No 89
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.65 E-value=2.1 Score=55.61 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HH---------
Q psy11582 398 REQLHTMKKQYESADESQYNMSQQVTSL-TSQLDQTKAQL---AQVGREKEALVKNIEMLRVEKS----AL--------- 460 (1760)
Q Consensus 398 qe~L~rLrdqL~EvE~e~r~Le~QaqkL-k~El~~l~~~l---~~a~~E~~~l~~~le~L~~Ek~----~L--------- 460 (1760)
...+..++-.+.+++.+++.+..+++.+ ..+...+.... .-..+.++.+++.+..+..... ..
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~ 187 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLK 187 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 3466677777888888888888888876 33333332222 0022223555555555443222 11
Q ss_pred -----HHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHhhHHHH-----
Q psy11582 461 -----EKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRIN----SDMDAREVELRGKEDM----- 526 (1760)
Q Consensus 461 -----e~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~----~E~e~~q~~L~~LEek----- 526 (1760)
+.-+..|..... ....|-.......+++..++.+....+....++..+. +-+...++.|.+|...
T Consensus 188 rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~ 266 (511)
T PF09787_consen 188 RTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEG 266 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 111222222222 1133444555555666666555555544444443333 3333344445555541
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 527 ---------NRRLREDLLIANEDLKNAKLAKELLE 552 (1760)
Q Consensus 527 ---------~S~Lr~EL~~lrE~L~~~~Lere~Le 552 (1760)
...++.|...+++.+..+..+++.+.
T Consensus 267 ~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~ 301 (511)
T PF09787_consen 267 FDSSTNSIELEELKQERDHLQEEIQLLERQIEQLR 301 (511)
T ss_pred cccccchhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344455555555555555544443
No 90
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.64 E-value=2.2 Score=51.28 Aligned_cols=213 Identities=13% Similarity=0.188 Sum_probs=98.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQ-------YNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEM-------LRVEK 457 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~-------r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~-------L~~Ek 457 (1760)
.+.--|-.++..|...|.+-++-+ ++|-.+-..|......+...+.++...+..++..+.. ..+.-
T Consensus 55 ~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ 134 (306)
T PF04849_consen 55 SQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDD 134 (306)
T ss_pred hhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHh
Confidence 555558888889988888877654 3444444445555555555554444444444333322 11111
Q ss_pred HHHH---------------------HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy11582 458 SALE---------------------KNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAR 516 (1760)
Q Consensus 458 ~~Le---------------------~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~ 516 (1760)
+..+ .....|+..+..|+.+-..|+...+.|...-..++++-..++.+.
T Consensus 135 ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---------- 204 (306)
T PF04849_consen 135 EESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---------- 204 (306)
T ss_pred hhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH----------
Confidence 1000 112444445555555555555544444444444443333333222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEIT 596 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~ 596 (1760)
-+.+.........|..||+.-.+....-+-++..|-.++..+...+...-..+.+|..-+...+.-...+...|..++..
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555444444444444444444433333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11582 597 IEANDKELQRLQEQLASL 614 (1760)
Q Consensus 597 l~alEre~~~L~eqla~L 614 (1760)
...+..=+...++++..+
T Consensus 285 Y~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 285 YAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333343333
No 91
>KOG0980|consensus
Probab=96.58 E-value=4.9 Score=53.53 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11582 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLE 622 (1760)
Q Consensus 543 ~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLE 622 (1760)
.+..+...|...++++..+...++..-.+..+.++.++.|.+.+.-.+..++..+..+.........++.++-.+||.+-
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444444455555555555555666666666666666666666666666655555555555566666666666665
Q ss_pred HHH
Q psy11582 623 AIL 625 (1760)
Q Consensus 623 s~L 625 (1760)
..+
T Consensus 543 ~~~ 545 (980)
T KOG0980|consen 543 AEL 545 (980)
T ss_pred HHH
Confidence 544
No 92
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.55 E-value=6.6 Score=54.64 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy11582 410 SADESQYNMSQ 420 (1760)
Q Consensus 410 EvE~e~r~Le~ 420 (1760)
.++.....|+.
T Consensus 182 ~~~~~~e~l~~ 192 (908)
T COG0419 182 EAKAKIEELEG 192 (908)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 93
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.55 E-value=0.42 Score=57.71 Aligned_cols=221 Identities=15% Similarity=0.156 Sum_probs=132.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMV 471 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~ev 471 (1760)
+||++--++|.-|..-|+.|..++.-...-|..|+..+..+...+.+....+.++-+..-...+....|...+.+...+.
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 58899999999999999999999999999998899888888888866665555443222222335555556666666666
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 472 ESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRIN-----SDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKL 546 (1760)
Q Consensus 472 e~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~-----~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~L 546 (1760)
..|..++..|+..+.+++..+..+......+...-.... .+.+.+-..|+.+..++..|..++-++-.....+..
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666655544433221111 223333333344444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11582 547 AKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILF 626 (1760)
Q Consensus 547 ere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lf 626 (1760)
++|.+..... -|..+++-+..-... -.+.|.++--++.-|.+.+..+..+++.+.+.+.
T Consensus 162 ERD~yk~K~~--------------RLN~ELn~~L~g~~~-------rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 162 ERDAYKCKAH--------------RLNHELNYILNGDEN-------RIVDIDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHH--------------HHHHHHHHHhCCCCC-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444422211 112222211111111 0456788888888888888888888888888888
Q ss_pred HHHHHHH
Q psy11582 627 DTQSHLE 633 (1760)
Q Consensus 627 e~Qq~l~ 633 (1760)
.....+.
T Consensus 221 KYK~~le 227 (319)
T PF09789_consen 221 KYKSALE 227 (319)
T ss_pred HHHHHHH
Confidence 8876554
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.53 E-value=1.6 Score=54.38 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=38.0
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 476 SNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAK 548 (1760)
Q Consensus 476 ~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Ler 548 (1760)
..+...+..+..+++.+....++...++.+|...+.++......|.........+...|......|+.+..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555555555555555555555555444444
No 95
>KOG0962|consensus
Probab=96.48 E-value=7.5 Score=54.40 Aligned_cols=262 Identities=15% Similarity=0.140 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 403 TMKKQYESADESQYNMSQQVTS---LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLD 479 (1760)
Q Consensus 403 rLrdqL~EvE~e~r~Le~Qaqk---Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~e 479 (1760)
.+.+...+...+.+....-++- +++.-..+..........++..+...+.+..++...+..+.++...+ .+++
T Consensus 189 ~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~----~el~ 264 (1294)
T KOG0962|consen 189 SLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSL----KELE 264 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHH
Confidence 3334444444444444433332 33333333333333333444434444444444433333333322222 2233
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy11582 480 KVQKNNSRLSKINESLQSEKLFLQNELD-RINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEM 558 (1760)
Q Consensus 480 kLk~~~~eLqrq~d~leeEk~el~~el~-r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el 558 (1760)
++...+..|+-+...+.+++..+-..+. -..-....+..-+...+++.-.....+..+.-.++.+..+...+.+.+.++
T Consensus 265 k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~ 344 (1294)
T KOG0962|consen 265 KLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTEL 344 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555554 233334445555666666666666666777777777777777777777777
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHH------------------H-HHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy11582 559 QTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISK------------------Y-EITIEANDKELQRLQEQLASLRSDKE 619 (1760)
Q Consensus 559 ~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~K------------------m-~v~l~alEre~~~L~eqla~LrseKe 619 (1760)
......+.....-+........+-...+.-.+.. + ...+..+...+..+.+-.+.+.+.+.
T Consensus 345 ~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~ 424 (1294)
T KOG0962|consen 345 DLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNAL 424 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHH
Confidence 7777776665555444444333222211111111 0 23334444455555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 620 SLEAILFDTQSHLEQSDVKKEQLEH-EVQELLVKQESLKGQVVRLNKELE 668 (1760)
Q Consensus 620 sLEs~Lfe~Qq~l~qle~ekeqLE~-E~q~l~~~~E~Lq~el~rL~~ele 668 (1760)
.+...+.+....+......+..+.+ +...+.............+...++
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~~E~k~l~~~~~~~e~s~~~~~~~~~ 474 (1294)
T KOG0962|consen 425 DLIKEITDREVSLEAQKRIKDEIKKLESKGLKDKSFQYEDSTDDLKKLDE 474 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhHHHHHH
Confidence 6655555555555555444444444 333333333333333333444333
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.33 E-value=1.3 Score=53.31 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=73.6
Q ss_pred hchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhhhhhhhHHHHH
Q psy11582 1439 LQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQ 1518 (1760)
Q Consensus 1439 l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~~~~~~~~l~~ 1518 (1760)
|+.+--+.-..++.|..|..++.+++.||..+-.+.+.|..-|.-+-..-..|..++..+..-.++....+...++.++.
T Consensus 222 La~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 222 LARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677889999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q psy11582 1519 LQK 1521 (1760)
Q Consensus 1519 lqk 1521 (1760)
+.+
T Consensus 302 lR~ 304 (306)
T PF04849_consen 302 LRK 304 (306)
T ss_pred hhC
Confidence 754
No 97
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.31 E-value=3.6 Score=49.00 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=66.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEIT 596 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~ 596 (1760)
.++|..|-..+..|..+|..-+..-..+..+++.+...++..-.....-..+..+++.++.+-+-|-.-+++.+ -..
T Consensus 62 ~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm---n~d 138 (305)
T PF14915_consen 62 NGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM---NSD 138 (305)
T ss_pred hhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh---cch
Confidence 56677777777777777777666666666666666666555555555566777888888888887666666543 444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 597 IEANDKELQRLQEQLASLRSDKESLEAIL 625 (1760)
Q Consensus 597 l~alEre~~~L~eqla~LrseKesLEs~L 625 (1760)
+..+.-.+..|.+++....+...+|+..|
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~el 167 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIEL 167 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555544444444433
No 98
>KOG0976|consensus
Probab=96.26 E-value=6.6 Score=51.49 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=60.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 477 NLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKE 556 (1760)
Q Consensus 477 e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~ 556 (1760)
+--.++...+.++-.+-..+.++..++....+.+.++..+|..+.++++....-.-||....-.+.....+.---..++-
T Consensus 86 etriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 86 ETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 33455666666666666666666666666666666666666666666666666666666666555554444333333333
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHhHHHHHH
Q psy11582 557 EMQTLLAHIEKSKGDVEAEMERLLLDRSDMN 587 (1760)
Q Consensus 557 el~~aL~~aE~slaeLE~elekLrsE~a~lr 587 (1760)
-+-.+|-.--..+.+++..++.+.++.+...
T Consensus 166 ~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 166 MIGEDLHDKNEELNEFNMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 3334444333444444444444444444433
No 99
>KOG0994|consensus
Probab=96.25 E-value=8.3 Score=52.53 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy11582 497 SEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIE 566 (1760)
Q Consensus 497 eEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE 566 (1760)
+....+.....-+++.+.-.+..|-++|.+.|.+...+...--.|..++.+.+.|..-..++...+.++.
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555566666677777777777777766666666666666666666555555555555543
No 100
>KOG0946|consensus
Probab=96.24 E-value=6.2 Score=52.19 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11582 584 SDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAI 624 (1760)
Q Consensus 584 a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~ 624 (1760)
++....+....+++...+.+++.+-..+...-..++.+...
T Consensus 802 ~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~ 842 (970)
T KOG0946|consen 802 SEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGST 842 (970)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcc
Confidence 33333344445555555555555555544444444444433
No 101
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.24 E-value=0.0021 Score=85.68 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQ 647 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q 647 (1760)
..++..+.+++..+...++......+.++-.+..++..+..++.+++.+..+..
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~ 415 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERD 415 (713)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555544444444444444444444433333
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.20 E-value=1.1 Score=52.29 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11582 595 ITIEANDKELQRLQEQLASL 614 (1760)
Q Consensus 595 v~l~alEre~~~L~eqla~L 614 (1760)
..+..+.+++..+..+.+.|
T Consensus 149 ~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 149 EEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 103
>KOG0018|consensus
Probab=96.17 E-value=9 Score=52.25 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11582 425 LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQN 504 (1760)
Q Consensus 425 Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~ 504 (1760)
++.+.......+ +.+++-.+....+.+..+...+...+..+....+.-+.++...+......-+++..+.....+...
T Consensus 206 lkde~~~~q~e~--~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~ 283 (1141)
T KOG0018|consen 206 LKDEKGKAQKEQ--FLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEE 283 (1141)
T ss_pred HHHHHHHHHHHH--HHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776 888888888888888888888888888887777777777777776665555555555544444444
Q ss_pred HHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11582 505 ELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEK 567 (1760)
Q Consensus 505 el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~ 567 (1760)
.+.. +.++=..-......-.+.+.+...+.+.+..+....-.++.++.++..+..+-...++
T Consensus 284 ~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fek 345 (1141)
T KOG0018|consen 284 KLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEK 345 (1141)
T ss_pred HHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 1011111111122223333344444444444444444444444444444444443333
No 104
>KOG1003|consensus
Probab=96.13 E-value=3.2 Score=46.65 Aligned_cols=98 Identities=22% Similarity=0.364 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 458 SALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIA 537 (1760)
Q Consensus 458 ~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~l 537 (1760)
..++..-..+...++.++..+..-+.--.+..+.++..-..+-.+..++ ++...+.+.-+.++..|-.++-.+
T Consensus 49 Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dL-------E~~eeraE~~Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 49 KVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGEL-------ERAEERAEAAESQSEELEEDLRIL 121 (205)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444444444444444 444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11582 538 NEDLKNAKLAKELLEQNKEEMQTLL 562 (1760)
Q Consensus 538 rE~L~~~~Lere~Leqek~el~~aL 562 (1760)
...|..+...-+-+.+..+.....+
T Consensus 122 ~~nlk~l~~~ee~~~q~~d~~e~~i 146 (205)
T KOG1003|consen 122 DSNLKSLSAKEEKLEQKEEKYEEEL 146 (205)
T ss_pred HhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444444444444433333333
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.11 E-value=3.3 Score=46.62 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy11582 484 NNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLA 563 (1760)
Q Consensus 484 ~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~ 563 (1760)
.+.+|.-....++++...+...-...+++...+...|..|.+.+..+..+...++.+...+.-...-|..++......+.
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~ 147 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLIC 147 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444555555555555566666666666677777788888888888888888888887777777777777777777
Q ss_pred HHHHhHhhHHHHHHHHHhHHHHH
Q psy11582 564 HIEKSKGDVEAEMERLLLDRSDM 586 (1760)
Q Consensus 564 ~aE~slaeLE~elekLrsE~a~l 586 (1760)
.-++.+.+-...++.+..-++.+
T Consensus 148 ~~da~l~e~t~~i~eL~~~ieEy 170 (193)
T PF14662_consen 148 QRDAILSERTQQIEELKKTIEEY 170 (193)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 76666666555555555444444
No 106
>KOG0963|consensus
Probab=96.08 E-value=7.4 Score=50.43 Aligned_cols=120 Identities=22% Similarity=0.202 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy11582 880 EALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENV----GESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREM 955 (1760)
Q Consensus 880 ~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~----~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~ 955 (1760)
-.+..+-..+..++..++.++..+...+.....++..+... ......++.-+-..+.+.+.-+..++..+..|+..
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666666666666655554 44444555555666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHH
Q psy11582 956 VKKVESEKRDQARTIDEGLQKIAVRF-GDDEKQALRNQLNDQSNDVA 1001 (1760)
Q Consensus 956 Lkk~Ese~~eler~iEe~~qkl~~L~-l~qE~aeLrnqLrelE~e~~ 1001 (1760)
+..+......- .++.......+|+ ...+++.|.+.+..++.+..
T Consensus 265 l~~~N~~~~~~--~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 265 LAKANSSKKLA--KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred HHhhhhhhhhc--cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 65554322111 1122222222224 45566666666655555443
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.01 E-value=0.27 Score=53.42 Aligned_cols=119 Identities=21% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy11582 1265 GLIDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQT 1344 (1760)
Q Consensus 1265 ~~~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa 1344 (1760)
+++..|+..|=..|-+||+....--.-|.++-..+.++.. ++.+..+.+..|...+.+++-+-..++.+...+
T Consensus 27 ~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~-------d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRS-------DIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888988888765555555555555555544 455555555555555555555555555555666
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHH----HHHHHhhhcchHhhhhchhHh
Q psy11582 1345 KAAANSQSEAMDQKNEELQHLREKV----LTLELTLSNVSEEKSQGDDKL 1390 (1760)
Q Consensus 1345 ~~~l~~qeeal~~~~~E~~~~~~ki----~~le~~~~~~e~e~r~l~e~l 1390 (1760)
+..+.....+++.--+|..-++..+ +++...++-.+-|+-.|.++|
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666566666665544 455555555555555555443
No 108
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.95 E-value=10 Score=50.88 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 408 YESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVK 448 (1760)
Q Consensus 408 L~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~ 448 (1760)
+.+.+..+..+..+...+..++..+...++.+...+..+..
T Consensus 211 ~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 211 IEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333343333333333333333
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.94 E-value=0.87 Score=49.33 Aligned_cols=128 Identities=23% Similarity=0.336 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy11582 529 RLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY---EITIEANDKELQ 605 (1760)
Q Consensus 529 ~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km---~v~l~alEre~~ 605 (1760)
.|+-|...+......+.-....+++....+...+..+...+..++..|+++........+.+... ....+++.|.+.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 44555555555555555555555555555555555555555555555555555555555555444 233446677777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 606 RLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRL 663 (1760)
Q Consensus 606 ~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL 663 (1760)
.|++++ +..+..|..+...+.....+-+.++..++.+.......-..+..+
T Consensus 84 ~LEeel-------e~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 84 LLEEEL-------EEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777666 455555666666666666666666666666655555544444433
No 110
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.92 E-value=0.98 Score=48.69 Aligned_cols=110 Identities=25% Similarity=0.303 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 536 IANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLR 615 (1760)
Q Consensus 536 ~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~Lr 615 (1760)
.+-+.|+.+.-..+.|+.....+...|...+.....+....+.-+.+...+ ..++..+-..+..+.-++..++
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L-------~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETL-------EEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666665555 5555556666677777788888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 616 SDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVK 652 (1760)
Q Consensus 616 seKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~ 652 (1760)
++|+.|...|...+..+..|+.-...+..-++.+...
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888887777777777666666555544443
No 111
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.92 E-value=6.2 Score=48.16 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 434 AQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEM 470 (1760)
Q Consensus 434 ~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~e 470 (1760)
.+++|..-.+.-++..+.....+|...+..+...+++
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~E 110 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSE 110 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333
No 112
>PRK09039 hypothetical protein; Validated
Probab=95.89 E-value=0.94 Score=55.80 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11582 521 RGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEAN 600 (1760)
Q Consensus 521 ~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~al 600 (1760)
..-..+...+..++..++..+..+.-++..++....+.......++...+.+..+ |+...+.....
T Consensus 70 ~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~--------------L~~~k~~~se~ 135 (343)
T PRK09039 70 SLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE--------------LDSEKQVSARA 135 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH--------------HHHHHHHHHHh
Confidence 3333444555555555555555555555555554444433333444444444433 44444445555
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 601 DKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQEL 649 (1760)
Q Consensus 601 Ere~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l 649 (1760)
..++..|..||+.|+.+..+|+..|..++........+++.|...++.+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555656665555555555555555555555555554444444
No 113
>KOG1003|consensus
Probab=95.88 E-value=4.1 Score=45.82 Aligned_cols=194 Identities=19% Similarity=0.225 Sum_probs=98.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy11582 480 KVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQ 559 (1760)
Q Consensus 480 kLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~ 559 (1760)
.+...+.-++..++.+++.+..+...+..+.....-..+.+..++.+.-.+.+....+.-.|+.+..=-+--....+++.
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVa 87 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVA 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555444444444444333334444444444444444444444444333333333333444
Q ss_pred HHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 560 TLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKK 639 (1760)
Q Consensus 560 ~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ek 639 (1760)
..|.-++..+...+.-.+---+....+-..+-.|..-+.++......+.+....+..++-.+...|-++.......+-..
T Consensus 88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsV 167 (205)
T KOG1003|consen 88 RKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRV 167 (205)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 44444443333332222222223333333444445555555555555556666666666666666666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 640 EQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 640 eqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
..|++++..+.......+.+...+.++++....-
T Consensus 168 akLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~ 201 (205)
T KOG1003|consen 168 AKLEKERDDLEEKLEEAKEKYEEAKKELDETLQE 201 (205)
T ss_pred HHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777665443
No 114
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.80 E-value=7.1 Score=47.92 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTS 424 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~Qaqk 424 (1760)
-.|+--+-....|..-+.+...-.+.++.++-.
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~ 100 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEETYE 100 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666667788888888888888877766
No 115
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.77 E-value=3.9 Score=46.58 Aligned_cols=103 Identities=14% Similarity=0.219 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11582 521 RGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEAN 600 (1760)
Q Consensus 521 ~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~al 600 (1760)
..=-.+...|+.++..+...+..+..+-.+|..-..--..||.+.+.+-++|-.-+.....++-.++..+-+......++
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q psy11582 601 DKELQRLQEQLASLRSDKESLEA 623 (1760)
Q Consensus 601 Ere~~~L~eqla~LrseKesLEs 623 (1760)
++.+.....++-.+......|..
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877776665554
No 116
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.74 E-value=8.2 Score=48.19 Aligned_cols=124 Identities=13% Similarity=0.265 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
.+.+.+..|+..+-.++...+.++.-...++....+.-+.+.+...+++..+..|..|..+.++|+..+..-.=. .
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is----~ 367 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIS----T 367 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCC----H
Confidence 445556666666666666667777777777777777777777788888888888888888888877766543221 2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy11582 546 LAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY 593 (1760)
Q Consensus 546 Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km 593 (1760)
-+.+...++++.+...|.++-.....|...+-...-+...-=++|.|.
T Consensus 368 e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~ 415 (622)
T COG5185 368 EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKT 415 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 234556677777777787777777777777766666666665666655
No 117
>KOG4593|consensus
Probab=95.72 E-value=11 Score=49.49 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 594 EITIEANDKELQRLQEQLASLRS 616 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~Lrs 616 (1760)
.+.+..+++......++++.++.
T Consensus 250 lqel~~l~~a~~q~~ee~~~~re 272 (716)
T KOG4593|consen 250 LQELEELERALSQLREELATLRE 272 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665543
No 118
>PRK09039 hypothetical protein; Validated
Probab=95.69 E-value=0.98 Score=55.65 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHH
Q psy11582 522 GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQI 590 (1760)
Q Consensus 522 ~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL 590 (1760)
.++.+...+..+|...+.......-+...|.++++.+...|+.++..++..+......+..++++...|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666666666666666666655555555555555444444444443333
No 119
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.68 E-value=6.9 Score=46.93 Aligned_cols=69 Identities=16% Similarity=0.314 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Q psy11582 425 LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINE 493 (1760)
Q Consensus 425 Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d 493 (1760)
+..+...+....+++...+..+......+..+.+.+...+.++...-..+...++.|...+.++-...+
T Consensus 32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 32 LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444555555555555555555555555555555555444444444444444444433333
No 120
>KOG0946|consensus
Probab=95.56 E-value=13 Score=49.37 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 410 SADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNS 476 (1760)
Q Consensus 410 EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~ 476 (1760)
.+++....+....+++++.+..+..+.+.+......++...+.+..+..........+..+++.|..
T Consensus 647 ~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 647 LAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666666654444444443333333333333333333333333333333
No 121
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.55 E-value=1.8 Score=46.96 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHH
Q psy11582 515 AREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEME 577 (1760)
Q Consensus 515 ~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~ele 577 (1760)
-++++|..||+.....-.-|....++|..+...-+.++..+..+......++..+.++...+.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777766666666666666666555555443
No 122
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.48 E-value=13 Score=48.90 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHHHH
Q psy11582 762 QANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTIN 841 (1760)
Q Consensus 762 ~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~i~ 841 (1760)
....+.+..+|..|..-.+. |-+ |=-..+.-...+.+.|..+...-.....++++++.-. .-...+-+.+.
T Consensus 277 ~~~~~~i~~~Id~lYd~le~-----E~~---Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY-~L~~~e~~~~~ 347 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEK-----EVE---AKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY-TLNHNELEIVR 347 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHH
Confidence 45566666677766665444 111 2222444566788899999999999999999999887 55566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11582 842 TLREQLNRTVAKLEELKTRT 861 (1760)
Q Consensus 842 ~l~eEL~~~~~~leea~~~l 861 (1760)
.+..++..+...+......+
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i 367 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERI 367 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766554433
No 123
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.40 E-value=14 Score=48.67 Aligned_cols=387 Identities=16% Similarity=0.218 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 595 ITIEANDKELQRLQEQLASL-----RSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELED 669 (1760)
Q Consensus 595 v~l~alEre~~~L~eqla~L-----rseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~ 669 (1760)
..+..++..+..+.+.+..+ +.....++..|..+..++..+...+..|...-.....++..++.....+++.+-.
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~ 154 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLA 154 (560)
T ss_pred HhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544433 3345555666666666666666666666666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHhhhhhHHHHhhhhcc----HHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 670 TEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQN----EECVTKLTEEKEQVRAALEKKLHA 745 (1760)
Q Consensus 670 ~~~~~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~~~~~~~~~~~~~~~~----~~~~~rL~~EKe~~~~~l~~e~~~ 745 (1760)
..-....-...|..++...+.+|...-.-.. .|| ++-+..+..+-..+... ++.
T Consensus 155 ~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~------------------~GD~~~A~eil~~l~~~~~~l~~~----~e~ 212 (560)
T PF06160_consen 155 HSFSYGPAIEELEKQLENIEEEFSEFEELTE------------------NGDYLEAREILEKLKEETDELEEI----MED 212 (560)
T ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 7777777777877888888777766422211 122 11133333332222211 111
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11582 746 TVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRI 825 (1760)
Q Consensus 746 a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~ 825 (1760)
+=.=..++...+-..+++|+.-+..|..+. -..++ ..+-+.+..+...+..+...|..+
T Consensus 213 ----IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g----y~l~~-------------~~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 213 ----IPKLYKELQKEFPDQLEELKEGYREMEEEG----YYLEH-------------LDIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred ----hHHHHHHHHHHhHHHHHHHHHHHHHHHHCC----CCCCC-------------CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 001011112222344555555555554442 11111 112222222222223322222222
Q ss_pred HHHHhhccHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH---
Q psy11582 826 KRESAGRSEQDRNTINTLREQLNRTVAKLE---ELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDK--- 899 (1760)
Q Consensus 826 rrea~~~~e~er~~i~~l~eEL~~~~~~le---ea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEER--- 899 (1760)
.=+. -...+..+.+.+..++..|+ .|..........+...+..+......+..+++.+...-.+.+..
T Consensus 272 ~l~~------~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~ 345 (560)
T PF06160_consen 272 ELDE------VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEI 345 (560)
T ss_pred CHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 2111 11122223333333333222 34444455555555555666666666666666665555443322
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 900 -------VDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDE 972 (1760)
Q Consensus 900 -------id~lr~ele~LereL~elee~~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe 972 (1760)
+..+......+...+.+...--+.+...+.++...+..+..+...+...+..++..-..+...+..+...+-.
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333333333334445555555555555555555555555555555555555444444444444
Q ss_pred HHhhHhhh-------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy11582 973 GLQKIAVR-------------F-GDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKF 1030 (1760)
Q Consensus 973 ~~qkl~~L-------------~-l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~ 1030 (1760)
.+..+... + +..++..+...+...--++..+...+..+......+......+-.....
T Consensus 426 ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L 497 (560)
T PF06160_consen 426 IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATL 497 (560)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433111 2 3455555555555555555555555555555555555555554444433
No 124
>KOG4807|consensus
Probab=95.40 E-value=7.4 Score=47.36 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHhhhhhHHH
Q psy11582 639 KEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQ----ETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEK 714 (1760)
Q Consensus 639 keqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~----~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~~~~~~~~~ 714 (1760)
.+.|++++|.+....++...+.+.++.++-+++..-. --+.+-.+-++.+|..+|..|+.....|+-+
T Consensus 293 ~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRE-------- 364 (593)
T KOG4807|consen 293 HEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRE-------- 364 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4566667777766666666666666666655554421 1233445678899999999999999999999
Q ss_pred HhhhhccHHHHHHhHHHHHHHH
Q psy11582 715 INLKKQNEECVTKLTEEKEQVR 736 (1760)
Q Consensus 715 ~~~~~~~~~~~~rL~~EKe~~~ 736 (1760)
++||+.||+.+-
T Consensus 365 ----------LekLreEKdrLL 376 (593)
T KOG4807|consen 365 ----------LEKLREEKDRLL 376 (593)
T ss_pred ----------HHHHHHHHHhhh
Confidence 888888888764
No 125
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.33 E-value=8.8 Score=45.90 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHL 632 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l 632 (1760)
..++..++.+..-|.+|+.+..+.-+.-+...-++|..+
T Consensus 220 eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 220 EERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 555566666666666666666666666666666666544
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.17 E-value=7.7 Score=44.29 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 532 EDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEME-RLLLDRSDMNEQISKYEITIEANDKELQRLQEQ 610 (1760)
Q Consensus 532 ~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~ele-kLrsE~a~lrdsL~Km~v~l~alEre~~~L~eq 610 (1760)
+|+-.+++.|..+....-.++...-+.+..|-++...+..|...+. +=..+...+...|+.+...+...++.+..|..+
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444443333322 222233444444444444444444444444443
No 127
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.13 E-value=13 Score=46.62 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy11582 552 EQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY---EITIEANDKELQRLQEQLASLRSDKESLEAILFD 627 (1760)
Q Consensus 552 eqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km---~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe 627 (1760)
++...+-.+++.++...+..-|.++.-|++..+.++..+.|. ..+++..-.+.-.|..++.-+..+++.|-++.|+
T Consensus 322 k~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 322 KQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 333344444555555555555555555555555555444444 2223333333334445555555555555555554
No 128
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=95.11 E-value=14 Score=47.11 Aligned_cols=370 Identities=17% Similarity=0.165 Sum_probs=175.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 274 KLVKENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVI 353 (1760)
Q Consensus 274 ekv~e~~eLq~rl~el~~~~e~l~~q~~eke~~i~~L~~~l~~LEs~~~~~~~~~~~~~~~~~~~~~lq~~l~dia~~~~ 353 (1760)
|..+.-..|..++++|...+..+++.....+...-.|..+|-.+-++-+- -.- -|..|-+.|.
T Consensus 10 d~~k~~~Ql~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~----------Q~s-------eL~~l~~ev~ 72 (531)
T PF15450_consen 10 DTLKRWKQLEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQL----------QDS-------ELMQLRQEVK 72 (531)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-------HHHHHHHHHH
Confidence 44444446778899999999999999999998888877777543332221 011 1222322222
Q ss_pred hccCCCCCCCCCCCCCC-CCCCCCCCCCCCCCcchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q psy11582 354 QDAEGKDIPSRPAPLKR-HATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVTS----LTSQ 428 (1760)
Q Consensus 354 ~d~~~~~~~~~~~~~~~-~~sp~~~~~~~r~~s~a~~~~~KLestqe~L~rLrdqL~EvE~e~r~Le~Qaqk----Lk~E 428 (1760)
+-+.. |-. ..-|+.+ .+......-..+|-...++|..|+....--+.+++.-++.+.. |.+-
T Consensus 73 ~~~~~---------peke~~~~~~~----~~~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~ 139 (531)
T PF15450_consen 73 QRAQV---------PEKEACEPSSI----QNQNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDM 139 (531)
T ss_pred hhccC---------ccccccCCCCc----cchhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22211 110 1111100 0000111112678888888888888887777777766665543 4444
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 429 LDQTKAQLAQVGREKEALV-KNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELD 507 (1760)
Q Consensus 429 l~~l~~~l~~a~~E~~~l~-~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~ 507 (1760)
+..-....+++-.-+..-+ .+...+..+...+...+..+..++..--. .+--+.-..+++.+-.++.-....+...-
T Consensus 140 Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l--~reakl~~~lqk~f~alEk~mka~e~~rl 217 (531)
T PF15450_consen 140 LRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFL--KREAKLCSFLQKSFLALEKRMKAQESSRL 217 (531)
T ss_pred HHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333332221 12233344444444333333333322111 11111222333333333333333322222
Q ss_pred hhhhhh-HHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHH
Q psy11582 508 RINSDM-DAREVELRGKEDMNRRLREDLLIANE-DLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSD 585 (1760)
Q Consensus 508 r~~~E~-e~~q~~L~~LEek~S~Lr~EL~~lrE-~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~ 585 (1760)
+.++-+ +.++.+...|.......-.-|-.-.+ .+.....+.--+..+.-+++.|+..++.-.......++++-.-...
T Consensus 218 ~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~k 297 (531)
T PF15450_consen 218 RTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQK 297 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 222222 22222222222222111111111122 3445566677778888899999999999888888888886544444
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 586 MNEQISKY-EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLN 664 (1760)
Q Consensus 586 lrdsL~Km-~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~ 664 (1760)
.+++=.++ ...+..++-..+ +-|..+... -...-.++...+..+.....-++..+..+...+-.|-+.+-.|+
T Consensus 298 aR~~k~~~e~sk~eeL~~~L~---~~lea~q~a---gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs 371 (531)
T PF15450_consen 298 ARDAKEKLEESKAEELATKLQ---ENLEAMQLA---GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALS 371 (531)
T ss_pred HHHHHhHHHHhhHHHHHHHHH---HHHHHHHHh---hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43333332 122222222221 222222211 22222233334445554455555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11582 665 KELEDTEKRAQETKASL 681 (1760)
Q Consensus 665 ~ele~~~~~~~~~~~~l 681 (1760)
..++.++..+...+..+
T Consensus 372 ~rld~qEqtL~~rL~e~ 388 (531)
T PF15450_consen 372 WRLDLQEQTLNLRLSEA 388 (531)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 66666666655555443
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.09 E-value=5.4 Score=48.55 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 465 REINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRIN-------SDMDAREVELRGKEDMNRRLREDLLIA 537 (1760)
Q Consensus 465 ~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~-------~E~e~~q~~L~~LEek~S~Lr~EL~~l 537 (1760)
.-+..+++....+.+..+.....++..+..++....++.......- ++..-+..-+...-+.+..|..|+..+
T Consensus 12 ~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~L 91 (319)
T PF09789_consen 12 LILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEEL 91 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777777777777776664433221 233334455666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11582 538 NEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSD 617 (1760)
Q Consensus 538 rE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~Lrse 617 (1760)
+.+|..+.-++.+|...................- .+..++=..|.++..++..++++++.+..+..++-.+
T Consensus 92 rqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---------~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~E 162 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---------HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTE 162 (319)
T ss_pred HHHHHHHhchHHHHHHHHHhhhhhhccccccccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766555444333222221111 4445555556666777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11582 618 KESLEAILFDTQSHLE 633 (1760)
Q Consensus 618 KesLEs~Lfe~Qq~l~ 633 (1760)
+|....-...+.+.+.
T Consensus 163 RD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 163 RDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666655555544443
No 130
>KOG0612|consensus
Probab=95.01 E-value=24 Score=49.09 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11582 595 ITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLE 633 (1760)
Q Consensus 595 v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~ 633 (1760)
......-+....+.+.++.++....+|++.+......+.
T Consensus 609 ~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~ 647 (1317)
T KOG0612|consen 609 SELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELL 647 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHH
Confidence 333444445555555555555555555555555444433
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.89 E-value=3.3 Score=44.75 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=63.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11582 516 REVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEI 595 (1760)
Q Consensus 516 ~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v 595 (1760)
.+..-..|+++.-.|-.+|..+.+.+..+.++.+.-..++..+...+..+...+..|+.++..++++...+-..+.+++.
T Consensus 15 ~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 15 SESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE 94 (140)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555666677777777777777777766666777777777777777777777777777777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11582 596 TIEANDKELQRLQEQLASL 614 (1760)
Q Consensus 596 ~l~alEre~~~L~eqla~L 614 (1760)
++..++.-...+..-|...
T Consensus 95 kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 95 KVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 6666655555444444433
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.69 E-value=31 Score=48.81 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 488 LSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKN 543 (1760)
Q Consensus 488 Lqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~ 543 (1760)
++.+...+..+...++.++....+-.+..+.+.+.+..+...+..++..+++.++.
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555544444444555555555555555555555555444444
No 133
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.54 E-value=24 Score=46.84 Aligned_cols=120 Identities=17% Similarity=0.275 Sum_probs=68.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 576 MERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRS--DKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQ 653 (1760)
Q Consensus 576 lekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~Lrs--eKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~ 653 (1760)
..+...+...++..+..+...+..-+..+..|..++..+-. .+...-.+.+++-.++..-...+..+-.+...+...+
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444422 3566677777777777777777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q psy11582 654 ESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEEC 706 (1760)
Q Consensus 654 E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~ 706 (1760)
..+.|.+.|...-.|.-+=+-.. ++ --++.+.+....-|..+
T Consensus 522 N~l~gkL~RtF~v~dElifrdAK-kD----------e~~rkaYK~La~lh~~c 563 (594)
T PF05667_consen 522 NSLTGKLDRTFTVTDELIFRDAK-KD----------EAARKAYKLLASLHENC 563 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhh-cC----------HHHHHHHHHHHHHHHHH
Confidence 88888777765555543333111 22 23455566666666665
No 134
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.42 E-value=17 Score=44.66 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 581 LDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELL 650 (1760)
Q Consensus 581 sE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~ 650 (1760)
.+++.....+......+.....++.....+|+.-...+-.=+..|..+.+...-++.+..+||.-+|.+.
T Consensus 217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~ 286 (499)
T COG4372 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYV 286 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444566666677777777777777777777777777777777777777777777777654
No 135
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.40 E-value=17 Score=44.52 Aligned_cols=143 Identities=21% Similarity=0.256 Sum_probs=87.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMV 471 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~ev 471 (1760)
.++.+..+-+..|.+.+.+.....+.+.+++..+......+....+.+..+... ...-+..|+.-..+|+.+-
T Consensus 15 ~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k-------~~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 15 NKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK-------AILAKSKLESLCRELQKQN 87 (309)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888888888888888877776666666666555555444 3333444444444444444
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 472 ESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELL 551 (1760)
Q Consensus 472 e~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~L 551 (1760)
..+..+. .....+.+..+..+.+.+.....+| +..++.-.+.+..+..+-..++++|..+.-+++.=
T Consensus 88 k~lkeE~---~~~~~eee~kR~el~~kFq~~L~dI----------q~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r 154 (309)
T PF09728_consen 88 KKLKEES---KRRAREEEEKRKELSEKFQATLKDI----------QAQMEEQSERNIKLREENEELREKLKSLIEQYELR 154 (309)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 2223344444445555555555555 66666667777778888888888888887777744
Q ss_pred HHh
Q psy11582 552 EQN 554 (1760)
Q Consensus 552 eqe 554 (1760)
+.-
T Consensus 155 E~~ 157 (309)
T PF09728_consen 155 EEH 157 (309)
T ss_pred HHH
Confidence 333
No 136
>PLN02939 transferase, transferring glycosyl groups
Probab=94.35 E-value=20 Score=49.50 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11582 488 LSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEK 567 (1760)
Q Consensus 488 Lqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~ 567 (1760)
.++.+-.+..-......+++....+++.+|..+.-|+-+.+.--..+...-+ ....-++++.+.+.+...|..-..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 215 (977)
T PLN02939 140 AEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQ----EKIHVEILEEQLEKLRNELLIRGA 215 (977)
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhh----ccccchhhHHHHHHHhhhhhcccc
Confidence 3444445555555555566666667777777777777666653222222111 112223444444444444433221
Q ss_pred ----hHhhHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 568 ----SKGDVEAEMERLLLDRSDMNEQISKY---EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKE 640 (1760)
Q Consensus 568 ----slaeLE~elekLrsE~a~lrdsL~Km---~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~eke 640 (1760)
...-|..+++-++.|-..+++.+.-+ ...+..++.-+..|.++.+.|.+-.-.||+.+-.+|.+...+-.-+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (977)
T PLN02939 216 TEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQ- 294 (977)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchh-
Confidence 12236778888888888888877766 4556677888999999999999999999999999998887765533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 641 QLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQ 675 (1760)
Q Consensus 641 qLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~ 675 (1760)
-+ -+..++|+++.-+.+.....|.....++
T Consensus 295 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (977)
T PLN02939 295 ---YD--CWWEKVENLQDLLDRATNQVEKAALVLD 324 (977)
T ss_pred ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 3788888888888877776666554444
No 137
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.21 E-value=14 Score=42.73 Aligned_cols=115 Identities=13% Similarity=0.225 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHH
Q psy11582 559 QTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ-----------RLQEQLASLRSDKESLEAILFD 627 (1760)
Q Consensus 559 ~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~-----------~L~eqla~LrseKesLEs~Lfe 627 (1760)
+.++..+.......+.....++..+..+......|..-+...++-+. ....++..+..+++.+-..|..
T Consensus 8 d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s 87 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNS 87 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 33344444444444444444444444444444444333333333332 2233344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 628 TQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 628 ~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
+...++.+-.+.+.+...+..+...-++|+.-+......+.....+
T Consensus 88 ~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqr 133 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQR 133 (207)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333333333333
No 138
>KOG1853|consensus
Probab=94.14 E-value=14 Score=42.83 Aligned_cols=89 Identities=22% Similarity=0.187 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHhhhhHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhH
Q psy11582 1079 VVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGS 1158 (1760)
Q Consensus 1079 ~~~EL~~lr~kl~~~~e~~r~~~r~lee~~Ke~~~L~v~L~~l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s 1158 (1760)
++-+++.++---++.-.-.|.+++.-.++-..+++..+-+.|+..||+.|=.|+.=||.+|-.-+..=-. -++|.-=.-
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~lles-vqRLkdEar 174 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLES-VQRLKDEAR 174 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHH
Confidence 4444444332222222334444555555555567888899999999999999999999999854433111 122333233
Q ss_pred HHHHHHhhhc
Q psy11582 1159 TLRRIAALRY 1168 (1760)
Q Consensus 1159 ~Lrr~lg~~~ 1168 (1760)
-||.+|.++.
T Consensus 175 dlrqelavr~ 184 (333)
T KOG1853|consen 175 DLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHH
Confidence 4888888864
No 139
>KOG0979|consensus
Probab=94.14 E-value=33 Score=46.97 Aligned_cols=152 Identities=13% Similarity=0.210 Sum_probs=115.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQ------------LDQTKAQLAQVGREKEALVKNIEMLRVEKSA 459 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~E------------l~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~ 459 (1760)
.++..+.+.+.+|++.++..++....+...-.. ++. |......+..+...+++++..+..+..+...
T Consensus 195 ~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~-~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~p 273 (1072)
T KOG0979|consen 195 DKLTTKTEKLNRLEDEIDKLEKDVERVRERERK-KSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKP 273 (1072)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 566777777777777777777776666554332 222 3444556677888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy11582 460 LEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANE 539 (1760)
Q Consensus 460 Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE 539 (1760)
++..+.+|..+...+..++......+.+.-..+...-+.+.+...++....+..+.+.+.-...+.+.-..++.|..++.
T Consensus 274 i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~ 353 (1072)
T KOG0979|consen 274 IEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQA 353 (1072)
T ss_pred hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888777777777777777777777777777777777777778888888888777
Q ss_pred HHHHH
Q psy11582 540 DLKNA 544 (1760)
Q Consensus 540 ~L~~~ 544 (1760)
.|..+
T Consensus 354 el~~~ 358 (1072)
T KOG0979|consen 354 ELQET 358 (1072)
T ss_pred hhhhc
Confidence 76554
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.10 E-value=17 Score=43.35 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q psy11582 520 LRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEI 595 (1760)
Q Consensus 520 L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v 595 (1760)
+..+=.|...+..=....+.-|+...-+...|+.....+...+..+..-..+++..+..|......+.+-++.+..
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa 204 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA 204 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555555555555555555555555555555555555555444444333
No 141
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.03 E-value=19 Score=43.69 Aligned_cols=217 Identities=16% Similarity=0.242 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q psy11582 403 TMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVE-KSALEKNKREINEMVESLNSNLDKV 481 (1760)
Q Consensus 403 rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~E-k~~Le~~r~eL~~eve~Le~e~ekL 481 (1760)
.++.-++....+.+.|+..+.-++..-..+...+..+....-.+....+.=..- -+.|-+.+..++.+-+.|-..|++-
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~E 103 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQE 103 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544444333333333333322222222222222221111 1233344445555555554444332
Q ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy11582 482 -QKNNSRLSKINESLQSEKLFLQNELDR-INSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQ 559 (1760)
Q Consensus 482 -k~~~~eLqrq~d~leeEk~el~~el~r-~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~ 559 (1760)
..--+.|.+.+..+..++-++.+.+.. ....+..++..|..|+ .+.......| +.|..++.++.
T Consensus 104 EE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le-------~e~~~~q~~l-------e~Lr~EKVdlE 169 (310)
T PF09755_consen 104 EEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE-------KEKSAKQEEL-------ERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHhHHHH-------HHHHHHHHhHH
Confidence 223356777777777777777766644 2222334444444333 2222222222 23444444455
Q ss_pred HHHHHHHHhHh-hHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11582 560 TLLAHIEKSKG-DVEAEMERLLLDRSDMNEQISKY---------EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQ 629 (1760)
Q Consensus 560 ~aL~~aE~sla-eLE~elekLrsE~a~lrdsL~Km---------~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Q 629 (1760)
.+|..-...+. -|-+-+++|-++...++..|+.- .+......--...+...|..|+.+...|-..|+.++
T Consensus 170 n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq 249 (310)
T PF09755_consen 170 NTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQ 249 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543322222 24444444555555554444432 000000000112344556666666666666666665
Q ss_pred HHHH
Q psy11582 630 SHLE 633 (1760)
Q Consensus 630 q~l~ 633 (1760)
....
T Consensus 250 ~e~~ 253 (310)
T PF09755_consen 250 QEHS 253 (310)
T ss_pred HHHH
Confidence 5443
No 142
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.90 E-value=21 Score=43.86 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 595 ITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVK 652 (1760)
Q Consensus 595 v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~ 652 (1760)
.++.++..++..+..++..++.....++..+......+..+..++..+..++.++...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444333
No 143
>KOG4593|consensus
Probab=93.89 E-value=30 Score=45.65 Aligned_cols=198 Identities=23% Similarity=0.237 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy11582 624 ILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEK---RAQETKASLVQQASGLDADYQNQISNLK 700 (1760)
Q Consensus 624 ~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~---~~~~~~~~l~~ql~q~E~e~q~~L~~~~ 700 (1760)
....+...+.+.-.+++++++-++.+....-...+-+..+...+..... ++......|..+|...++.+-..
T Consensus 420 ~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~q----- 494 (716)
T KOG4593|consen 420 DEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQ----- 494 (716)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3344444555555556666665555544433333334444444444333 34566666777777777664443
Q ss_pred HHhhHHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHH
Q psy11582 701 KQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDC---------------ELSRLQANL 765 (1760)
Q Consensus 701 ~ah~E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~e---------------l~~~~~~e~ 765 (1760)
+++.+.+ ..||. .-..++..|..|...++..++-.. ++..-++ -.......+
T Consensus 495 ---r~e~~~~-~e~i~---~~~ke~~~Le~En~rLr~~~e~~~------l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~ 561 (716)
T KOG4593|consen 495 ---REESELL-REKIE---QYLKELELLEEENDRLRAQLERRL------LQGDYEENITRVLHMSTNPTSKARQIKKNRL 561 (716)
T ss_pred ---HHHhhhh-hhHHH---HHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhccceeeecCCchHHHHHHHHHHH
Confidence 2221111 11110 002236667777766663322111 1111100 011223455
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHHHHHH
Q psy11582 766 CQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQ--DRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTL 843 (1760)
Q Consensus 766 ~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~--ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~i~~l 843 (1760)
..|+.++++|..-... .+-.+-+-....-.....+. ..+.+++++...+..-..|+|.=.+..-.-=++++.++
T Consensus 562 e~LqaE~~~lk~~l~~----le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL 637 (716)
T KOG4593|consen 562 EELQAELERLKERLTA----LEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSL 637 (716)
T ss_pred HHHHHHHHHHHHHHHH----HhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666655542222 33333344444445555554 78889999998888888888887765555444444444
No 144
>KOG0962|consensus
Probab=93.73 E-value=46 Score=47.17 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11582 425 LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALE---KNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLF 501 (1760)
Q Consensus 425 Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le---~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~e 501 (1760)
+..-++.+..-.-|...++..+...++.+..-|...+ ......+..++.-....+.+...+....+.++.+.....+
T Consensus 183 y~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~e 262 (1294)
T KOG0962|consen 183 YTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKE 262 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344455666666677777777777777665555433 3334444444444444455544444444444443333333
Q ss_pred HHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy11582 502 LQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLK-NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL 580 (1760)
Q Consensus 502 l~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~-~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLr 580 (1760)
++-...+...|+..+..+.+++..++.++. -.....+.+........+.+...+....+++..+..+.
T Consensus 263 -----------l~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~ 331 (1294)
T KOG0962|consen 263 -----------LEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLN 331 (1294)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333344556666666666777766666665 33334445555566666666666666677777777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 581 LDRSDMNEQISKYEITIEANDKE 603 (1760)
Q Consensus 581 sE~a~lrdsL~Km~v~l~alEre 603 (1760)
.+...+...-.++..++..++.+
T Consensus 332 ~e~~~l~~~k~~~~~~~~~lq~e 354 (1294)
T KOG0962|consen 332 EERSSLIQLKTELDLEQSELQAE 354 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555554444444433
No 145
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.67 E-value=26 Score=44.15 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11582 854 LEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQL 893 (1760)
Q Consensus 854 leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL 893 (1760)
|.++..+++......+..|..|+-...-+.+.++.|+..+
T Consensus 315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~ 354 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKI 354 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 4456666666666666777777777777777777777665
No 146
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.63 E-value=16 Score=41.95 Aligned_cols=110 Identities=14% Similarity=0.231 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy11582 399 EQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNK---REINEMVESLN 475 (1760)
Q Consensus 399 e~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r---~eL~~eve~Le 475 (1760)
+-+.+|++++.+..+.-...++.+..+..+...+..-+..+..++..++..+....+.+..|.... ..+..++..|.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888887778888888888888888888888888888777665543 45577777777
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 476 SNLDKVQKNNSRLSKINESLQSEKLFLQNELDR 508 (1760)
Q Consensus 476 ~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r 508 (1760)
-+.+-|...+..++..++.+...++..+.++..
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888777777743
No 147
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.57 E-value=17 Score=41.79 Aligned_cols=105 Identities=22% Similarity=0.232 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Q psy11582 920 VGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSND 999 (1760)
Q Consensus 920 ~~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~qkl~~L~l~qE~aeLrnqLrelE~e 999 (1760)
-+.++..++.+.+.........+..+..+|..+.+-|..+..+...+...+.....+- .....+++.+..++..
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK------~~L~~~k~rl~~~ek~ 101 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK------QSLQNLKARLKELEKE 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3445666666666666666667777777777777777777766666666665544333 1223344445555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy11582 1000 VASLKKELLQAEQIRLDLDSEKVTLQEKCKF 1030 (1760)
Q Consensus 1000 ~~elr~eLqeLeqE~~elesEl~eLq~rL~~ 1030 (1760)
+..+.-+-.-+.+....+..+..++..+...
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666666655555544
No 148
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.54 E-value=24 Score=43.24 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 428 QLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELD 507 (1760)
Q Consensus 428 El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~ 507 (1760)
.++.+-..+.++..+..++...+..+......+...+..+..+......-..+|..---+|+++...+.++...+..+-.
T Consensus 23 K~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee 102 (309)
T PF09728_consen 23 KLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEE 102 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555566666666665555555544
Q ss_pred hhhhhh
Q psy11582 508 RINSDM 513 (1760)
Q Consensus 508 r~~~E~ 513 (1760)
..+.++
T Consensus 103 ~kR~el 108 (309)
T PF09728_consen 103 EKRKEL 108 (309)
T ss_pred HHHHHH
Confidence 444333
No 149
>KOG0999|consensus
Probab=93.54 E-value=29 Score=44.34 Aligned_cols=120 Identities=25% Similarity=0.317 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH----------------------
Q psy11582 536 IANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY---------------------- 593 (1760)
Q Consensus 536 ~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km---------------------- 593 (1760)
.++=.++.++.+.+.|.++.++....-.-++.++.+.-..+..-|...-.++.+|+..
T Consensus 198 glkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~e 277 (772)
T KOG0999|consen 198 GLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGE 277 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheeccccccc
Confidence 3444466666777777777777776666667666664444444444445666666554
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 --------------------------------EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQ 641 (1760)
Q Consensus 594 --------------------------------~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeq 641 (1760)
.+...-+..+++.|.+++-....+|--|-+.|.++|..+..-+.....
T Consensus 278 Dga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~ 357 (772)
T KOG0999|consen 278 DGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLME 357 (772)
T ss_pred ccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHH
Confidence 455666778888899999999999999999999998777665444443
Q ss_pred HHHHHHHHHHHHHH
Q psy11582 642 LEHEVQELLVKQES 655 (1760)
Q Consensus 642 LE~E~q~l~~~~E~ 655 (1760)
.-..+..+...+.+
T Consensus 358 ~~er~~~l~e~v~a 371 (772)
T KOG0999|consen 358 QRERVDRLTEHVQA 371 (772)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 150
>KOG0612|consensus
Probab=93.40 E-value=48 Score=46.37 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 464 KREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKN 543 (1760)
Q Consensus 464 r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~ 543 (1760)
.......++.+......+. ...++-++++..-.++.....++.+ .++.+.+..+...+++.+.....+..+...++.
T Consensus 443 l~~~~~~~~~~~~~~~~~~-~~~~~~keL~e~i~~lk~~~~el~~--~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~ 519 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA-ELEEMDKELEETIEKLKSEESELQR--EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQ 519 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566665555554 2223333333333333333333333 455556666666666666666666666666666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHH
Q psy11582 544 AKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDR 583 (1760)
Q Consensus 544 ~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~ 583 (1760)
.+-+.+.+.+........+.++.+-...|+.....++++.
T Consensus 520 ~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~ 559 (1317)
T KOG0612|consen 520 LEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAES 559 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhH
Confidence 5555555544444444444444444444444433333333
No 151
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.33 E-value=1 Score=51.16 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMV 471 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~ev 471 (1760)
.++...++.+..+..-..+....+..+...+.++..++......+ ..+...+..|......++..+.+...-+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l-------~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL-------AELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ----------------------------------------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444444444444444 4444444445555555555555555556
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11582 472 ESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNE 505 (1760)
Q Consensus 472 e~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~e 505 (1760)
+.+.-++..|+..++-++..+..++.+-.+++..
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666677777777777777666643
No 152
>KOG0971|consensus
Probab=93.31 E-value=41 Score=45.38 Aligned_cols=238 Identities=19% Similarity=0.268 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHH
Q psy11582 418 MSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQS 497 (1760)
Q Consensus 418 Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~lee 497 (1760)
|..|+.+|++++..+.....+=.-.+ ..++.+.-+...++.-+..+..+...|+.++-+-+.+..+++.--+....
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl----~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKL----KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554441111111 12333555555666666666667777776666666666555555555555
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHhH
Q psy11582 498 EKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEM--------QTLLAHIEKSK 569 (1760)
Q Consensus 498 Ek~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el--------~~aL~~aE~sl 569 (1760)
++-+...-+.-+ .-.-+-.|++...|.-|+.+++|++..+....++|..+.++. ...+.++|..+
T Consensus 305 emad~ad~iEma-------TldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN 377 (1243)
T KOG0971|consen 305 EMADTADAIEMA-------TLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQN 377 (1243)
T ss_pred HHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHH
Confidence 555554444332 333344577777888999999999999999999998887654 22344555555
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 570 GDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQEL 649 (1760)
Q Consensus 570 aeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l 649 (1760)
+.| +|.|.+|..-...--.+++.+.+++.-++++...|...-..++..+.+.+..+..|...+...
T Consensus 378 ~rL--------------KdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 378 ARL--------------KDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHH--------------HHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544 444555544444444556666677777777777776666666667777777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 650 LVKQESLKGQVVRLNKELEDTEKRAQETKASL 681 (1760)
Q Consensus 650 ~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l 681 (1760)
+++ |..-.++...+-++|.-...++.+++.|
T Consensus 444 lGA-E~MV~qLtdknlnlEekVklLeetv~dl 474 (1243)
T KOG0971|consen 444 LGA-EEMVEQLTDKNLNLEEKVKLLEETVGDL 474 (1243)
T ss_pred hcH-HHHHHHHHhhccCHHHHHHHHHHHHHHH
Confidence 554 4555667778888888888888888774
No 153
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.06 E-value=41 Score=44.66 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRV---EKSALEKNKREIN 468 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~---Ek~~Le~~r~eL~ 468 (1760)
..|..-+..|..|...+.+++.+++.+...+..+..+..........+..++.-....++.|.. -...|+..+..-.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666666666666665555555555555554444444432 2334455555555
Q ss_pred HHHHHHHHhHHHHHHH
Q psy11582 469 EMVESLNSNLDKVQKN 484 (1760)
Q Consensus 469 ~eve~Le~e~ekLk~~ 484 (1760)
..+..|..+|++.+.-
T Consensus 408 ~rl~~L~~qWe~~R~p 423 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAP 423 (594)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 5555555555555543
No 154
>KOG1853|consensus
Probab=92.98 E-value=20 Score=41.70 Aligned_cols=117 Identities=23% Similarity=0.243 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 840 INTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAEN 919 (1760)
Q Consensus 840 i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee 919 (1760)
...+.+||++|++--.+.-..+..+++.++.....+......+..+.+.++-.. +......-.....++..+.....
T Consensus 29 f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~---e~q~~q~y~q~s~Leddlsqt~a 105 (333)
T KOG1853|consen 29 FLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ---EDQRVQFYQQESQLEDDLSQTHA 105 (333)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888777777777788888888888888887777777777666553 22233333444555556666655
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 920 VGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKV 959 (1760)
Q Consensus 920 ~~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~ 959 (1760)
-.+.+++-+.++...-.+++.-+-...-++.++...|..+
T Consensus 106 ikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqA 145 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQA 145 (333)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHH
Confidence 5555555555555554454444444444444444444333
No 155
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.85 E-value=15 Score=46.04 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy11582 439 VGREKEAL 446 (1760)
Q Consensus 439 a~~E~~~l 446 (1760)
+...+..+
T Consensus 86 l~~~~~~l 93 (423)
T TIGR01843 86 LESQVLRL 93 (423)
T ss_pred HHHHHHHH
Confidence 33333333
No 156
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.79 E-value=19 Score=40.21 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=42.4
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11582 476 SNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNK 555 (1760)
Q Consensus 476 ~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek 555 (1760)
.+|+.|+-.|..+...++.-..++..+.........-+.-..+.+.++......++.+|....+.+..+..+...+..++
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555554444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q psy11582 556 EEMQTLLAHI 565 (1760)
Q Consensus 556 ~el~~aL~~a 565 (1760)
..+......+
T Consensus 122 ~k~~~~~~~l 131 (177)
T PF13870_consen 122 DKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.74 E-value=29 Score=42.10 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11582 908 LETARRLKEAENVGESLRKDLL 929 (1760)
Q Consensus 908 e~LereL~elee~~e~LrkEL~ 929 (1760)
.++++.|.---++++.+-+.+.
T Consensus 271 ~rLqr~L~~E~erreal~R~ls 292 (310)
T PF09755_consen 271 RRLQRKLQREVERREALCRHLS 292 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 158
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=92.54 E-value=29 Score=41.59 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhH-----hHhhhhhhHHHHHHhHHHhhhhhhhhh
Q psy11582 1345 KAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMK-----CRESGARLDAEKRALQDELSRTEARVT 1419 (1760)
Q Consensus 1345 ~~~l~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~k-----lra~~~~l~~e~r~L~e~l~~~E~r~~ 1419 (1760)
...+..|||.+.+-+.-|+..-++|-...+..--.++++++=.+..+- -++...+...|++.=.=.+.+.+.|.|
T Consensus 132 ~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t 211 (276)
T PF12037_consen 132 EELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAEAEGRAKEERENEDINLEQLRLKAEEERET 211 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999888888888888887775554 344555555555544444566677777
Q ss_pred hhhhhhccc
Q psy11582 1420 KLELQRVAL 1428 (1760)
Q Consensus 1420 ~lel~rr~l 1428 (1760)
-|++..-.+
T Consensus 212 ~lesI~t~f 220 (276)
T PF12037_consen 212 VLESINTTF 220 (276)
T ss_pred HHHHHHHHH
Confidence 776655443
No 159
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.38 E-value=23 Score=43.45 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy11582 847 LNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQ----AQLLETARRLKEAENVGE 922 (1760)
Q Consensus 847 L~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr----~ele~LereL~elee~~e 922 (1760)
+..+...+......++.+...|......++.-+..+......++..+..+....+.+. .++..+..+|......+.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM 221 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555444444444432 345555555555555555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 923 SLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVE 960 (1760)
Q Consensus 923 ~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~E 960 (1760)
..+.++.+++..+..+...++.......++...+..++
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555444444
No 160
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.27 E-value=6.5 Score=40.44 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHH
Q psy11582 524 EDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDM 586 (1760)
Q Consensus 524 Eek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~l 586 (1760)
+...+.+...|.++...|.....+++.|..+++++..++..+..+......-++.|.+.+++.
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444444333
No 161
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.99 E-value=28 Score=40.20 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=97.2
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 470 MVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKE 549 (1760)
Q Consensus 470 eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere 549 (1760)
++..|...++.+...+.++..-++.++.-...++.+. .+........+..+-.....+..+|.++...+..+.-.++
T Consensus 24 e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~---~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 24 EEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEK---QKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444445555555555555555555555444444332 2334444555555555666666666666666666666666
Q ss_pred HHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHH
Q psy11582 550 LLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRS----DKESLEAIL 625 (1760)
Q Consensus 550 ~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~Lrs----eKesLEs~L 625 (1760)
-+..-..+...--..+.+.+.+....+......+..++... +.++....++|+.+++ +.-.|...|
T Consensus 101 k~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA----------eekL~~ANeei~~v~~~~~~e~~aLqa~l 170 (207)
T PF05010_consen 101 KQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA----------EEKLEKANEEIAQVRSKHQAELLALQASL 170 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66555555544444444455555555554444444443333 2344444455555544 344566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 626 FDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQ 659 (1760)
Q Consensus 626 fe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~e 659 (1760)
-..+-.+..++..+++-.+++.+|..=++.|-..
T Consensus 171 kk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 171 KKEEMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777777776666655443
No 162
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.85 E-value=18 Score=38.72 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 525 DMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKEL 604 (1760)
Q Consensus 525 ek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~ 604 (1760)
.+|+..-..|..+|+.++.+...+..+..+.......|...+.+-. .+...+...+..+..++..+..++
T Consensus 52 ~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~----------~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 52 VKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWE----------EQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666555554444444443333322 222233333333444455555555
Q ss_pred HHHHHHHH
Q psy11582 605 QRLQEQLA 612 (1760)
Q Consensus 605 ~~L~eqla 612 (1760)
..|-.+|.
T Consensus 122 ~lLh~QlE 129 (132)
T PF07926_consen 122 KLLHDQLE 129 (132)
T ss_pred HHHHHHHh
Confidence 55555554
No 163
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.79 E-value=39 Score=41.43 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 393 KLATHREQLHTMKKQYESADESQYNMSQQVTS 424 (1760)
Q Consensus 393 KLestqe~L~rLrdqL~EvE~e~r~Le~Qaqk 424 (1760)
-|+-=+=....|.+-+.+...-.+.++...-.
T Consensus 64 ~LElY~~sC~EL~~~I~egr~~~~~~E~et~~ 95 (312)
T smart00787 64 LLELYQFSCKELKKYISEGRDLFKEIEEETLI 95 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555667777788877777777777664
No 164
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.75 E-value=21 Score=38.22 Aligned_cols=58 Identities=34% Similarity=0.444 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 607 LQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKEL 667 (1760)
Q Consensus 607 L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~el 667 (1760)
+..++..++.+.++....|.... ..++.++..|++++..+..+++.|..+-.-|...+
T Consensus 71 ~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 71 LQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333332 33455555555555555555555555544444433
No 165
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.58 E-value=84 Score=44.80 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=11.0
Q ss_pred CCCChHhHHHHHHHHHHHH
Q psy11582 1267 IDVDPEIVRKGVRNLMQQV 1285 (1760)
Q Consensus 1267 ~d~Dp~~vr~~lr~l~q~l 1285 (1760)
..+||...+..+ ++|..|
T Consensus 986 ~~lD~~~~~~~~-~~l~~l 1003 (1047)
T PRK10246 986 GTLDSETLDTAL-DALDAL 1003 (1047)
T ss_pred CcCCHHHHHHHH-HHHHHH
Confidence 368888776655 344444
No 166
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.97 E-value=39 Score=42.26 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=6.2
Q ss_pred HHHHHHHhHHHHHHHh
Q psy11582 470 MVESLNSNLDKVQKNN 485 (1760)
Q Consensus 470 eve~Le~e~ekLk~~~ 485 (1760)
++..++.++..++...
T Consensus 82 ~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 82 DAAELESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444333333333
No 167
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.95 E-value=8.5 Score=45.48 Aligned_cols=98 Identities=18% Similarity=0.346 Sum_probs=67.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHH
Q psy11582 1286 AQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHL 1365 (1760)
Q Consensus 1286 ~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~ 1365 (1760)
..++|++.+|...|..+.-+...+..........+..|...+..+++++..++.+-.-+.....--+...-....|+..|
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999887766665554444444445555555
Q ss_pred HHHHHHHHHhhhcchHhh
Q psy11582 1366 REKVLTLELTLSNVSEEK 1383 (1760)
Q Consensus 1366 ~~ki~~le~~~~~~e~e~ 1383 (1760)
..+|..++..+.....++
T Consensus 81 e~e~~e~~~~i~~l~ee~ 98 (246)
T PF00769_consen 81 EQELREAEAEIARLEEES 98 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555444444333333
No 168
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.61 E-value=43 Score=44.26 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy11582 441 REKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNN 485 (1760)
Q Consensus 441 ~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~ 485 (1760)
.++..+...+..+..+...+......+..+++.++..++.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 161 KAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 333333333333444444444444445555555555555555444
No 169
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.20 E-value=9.3 Score=39.37 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=68.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11582 547 AKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILF 626 (1760)
Q Consensus 547 ere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lf 626 (1760)
++..|+..+.++..-|+.++.++.+...+...+..+.++++..+..+..+..+....+..|..+|++++...+.-...-.
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~ 82 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKL 82 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999888888888888888888888887776444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11582 627 DTQSHLEQSDVKKEQLEHE 645 (1760)
Q Consensus 627 e~Qq~l~qle~ekeqLE~E 645 (1760)
+++..+...+..+..+|-.
T Consensus 83 ~l~~r~~k~~~dka~lel~ 101 (107)
T PF09304_consen 83 ELESRLLKAQKDKAILELK 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 5555555555555544433
No 170
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.12 E-value=48 Score=39.53 Aligned_cols=181 Identities=15% Similarity=0.182 Sum_probs=101.0
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 470 MVESLNSNLDKVQKNNSRLSKINES-LQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAK 548 (1760)
Q Consensus 470 eve~Le~e~ekLk~~~~eLqrq~d~-leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Ler 548 (1760)
.|..+=..++.+..++.-++..... ++.-+.+++..-......+..++.++..|+.+.....+|+..+.-=-. -++
T Consensus 39 ~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EY 115 (258)
T PF15397_consen 39 KVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD---HEY 115 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhh
Confidence 4555555666777777666665554 555566666666667777777788888888888888777776654222 222
Q ss_pred HHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHH
Q psy11582 549 ELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY-EITIEANDKELQRLQEQLAS--LRSDKESLEAIL 625 (1760)
Q Consensus 549 e~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km-~v~l~alEre~~~L~eqla~--LrseKesLEs~L 625 (1760)
-+-.=+ +++|.-.+..++....+=.+.|..| ...+..+.+++..-.+++.. ...-.......+
T Consensus 116 PvK~vq--------------Ia~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l 181 (258)
T PF15397_consen 116 PVKAVQ--------------IANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPAL 181 (258)
T ss_pred hHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 222222 3333333333333333333333333 44455555555544444432 222345566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 626 FDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKEL 667 (1760)
Q Consensus 626 fe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~el 667 (1760)
+........+..+.......+.++...+..|+.+|..|..+.
T Consensus 182 ~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 182 LQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666566666666666666666666666666666666555443
No 171
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.12 E-value=48 Score=39.51 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=11.0
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHH
Q psy11582 563 AHIEKSKGDVEAEMERLLLDRSDM 586 (1760)
Q Consensus 563 ~~aE~slaeLE~elekLrsE~a~l 586 (1760)
..++..+...+..+++++..+...
T Consensus 149 ~~Ae~El~~A~~LL~~v~~~~~~~ 172 (264)
T PF06008_consen 149 QNAEDELKEAEDLLSRVQKWFQKP 172 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444555554444433
No 172
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.08 E-value=28 Score=44.98 Aligned_cols=38 Identities=5% Similarity=0.094 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQL 429 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El 429 (1760)
.+-..+......+.+++.+.+.++...+..+...+.+.
T Consensus 154 ~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 154 SKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455556677777777777777777777776654443
No 173
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.87 E-value=15 Score=43.55 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Q psy11582 410 SADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLS 489 (1760)
Q Consensus 410 EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLq 489 (1760)
++++...-|+.++..+..+.......+..+...+..|......+..+...|+..+.++......|.... ....
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~-------~~~~ 74 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEA-------EMQE 74 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 567777888888888888888877777666666666666666666666665555555554444444444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy11582 490 KINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDL 541 (1760)
Q Consensus 490 rq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L 541 (1760)
.....+..+..++...+.+...+.......-..|..+....+..+...++.|
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444443
No 174
>KOG0993|consensus
Probab=89.64 E-value=63 Score=40.20 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHhHHhhHHHHHhhhhHHHHHHHHhhhhhhhhhhHHhHHHHH
Q psy11582 1079 VVEDLARLKQKYE---------QSVEMNNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERVRASSAHL 1139 (1760)
Q Consensus 1079 ~~~EL~~lr~kl~---------~~~e~~r~~~r~lee~~Ke~~~L~v~L~~l~~rl~~a~~r~~~le~eL 1139 (1760)
+..||.++++.+. ...+.......++.+++ -..+-.+..|+..|..|+.+|..|+..+
T Consensus 119 ~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv---~pmekeI~elk~kl~~aE~~i~El~k~~ 185 (542)
T KOG0993|consen 119 LEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELV---TPMEKEINELKKKLAKAEQRIDELSKAK 185 (542)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 5556666655555 33334455666777777 6777788889999999999999988433
No 175
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=89.59 E-value=15 Score=41.31 Aligned_cols=143 Identities=19% Similarity=0.273 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q psy11582 1273 IVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQS 1352 (1760)
Q Consensus 1273 ~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qe 1352 (1760)
+|=.||++|-.+|+.+|-||-.+...+.+|++.+..-...... ....-..+-.++-.....+..+|++|.+--.+.|
T Consensus 1 AvisALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~---~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLE 77 (178)
T PF14073_consen 1 AVISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQS---EQNERERAHQELSKQNQDLSSQLSAAETRCSLLE 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHH---HhhhhhcccchhhhccHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999988764432211 1110111111112226678888888887766665
Q ss_pred H-------HhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhh
Q psy11582 1353 E-------AMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQR 1425 (1760)
Q Consensus 1353 e-------al~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~r 1425 (1760)
. .|...+.|+....++=+.++..-.. ...+++.+++| +..|+.+.-+|.-.-.-+|++.-.||.+.
T Consensus 78 KQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~---~~~~~~~klek----Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 78 KQLEYMRKMVESAEKERNAVLEQQVSLQRERQQ---DQSELQAKLEK----LEKLEKEYLRLTATQSLAETKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc---chhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3445566777776666666654332 23334444444 33467777777776666666666665554
No 176
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.51 E-value=52 Score=42.62 Aligned_cols=32 Identities=6% Similarity=0.076 Sum_probs=19.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11582 479 DKVQKNNSRLSKINESLQSEKLFLQNELDRIN 510 (1760)
Q Consensus 479 ekLk~~~~eLqrq~d~leeEk~el~~el~r~~ 510 (1760)
........-++.++..++.++...+..+..+.
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666665554
No 177
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.49 E-value=20 Score=41.69 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=38.9
Q ss_pred CChH-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy11582 1269 VDPE-IVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKM 1320 (1760)
Q Consensus 1269 ~Dp~-~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~ 1320 (1760)
.||. +++-.+|+.=..|.++.+.=-...+.-..+.+++.+....+..++.+.
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888 899888888887777777777777777777777777777666666544
No 178
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.29 E-value=4 Score=49.85 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHh
Q psy11582 984 DEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRS 1063 (1760)
Q Consensus 984 qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~ 1063 (1760)
.....+...+..++.+...+..++..++.+...+..++..++.....++.+... ...+.+.+..+..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~-------------~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE-------------YWREYNELQLELI 109 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 344555666666777777777788888888888888888888888777666555 6777777777777
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHH
Q psy11582 1064 DLSHQLSLLQRKKENVVEDLARLKQ 1088 (1760)
Q Consensus 1064 el~~~l~~l~r~~~~~~~EL~~lr~ 1088 (1760)
++...++.+..+...+...|.+|++
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777667777776654
No 179
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=88.87 E-value=55 Score=38.48 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=25.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 609 EQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVR 662 (1760)
Q Consensus 609 eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~r 662 (1760)
-+++.+..+.+-|+..|-.......-...++.-+...++.+...+..|+..+..
T Consensus 157 ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 157 AELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444555555555555555555555443
No 180
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.61 E-value=45 Score=37.11 Aligned_cols=145 Identities=16% Similarity=0.235 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHhhHHHHH
Q psy11582 449 NIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMD-AREVELRGKEDMN 527 (1760)
Q Consensus 449 ~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e-~~q~~L~~LEek~ 527 (1760)
.+.++.+-|..+=.-......+++.+..+++.++..+.+.-...|.++......-..+.-..+... ..+..++..=+..
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A 86 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEA 86 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 344444444444444444444444555555555555554444555554444444444433333332 2455667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy11582 528 RRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY 593 (1760)
Q Consensus 528 S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km 593 (1760)
..+.-.|...+++-..+...+|.|+..+..+...+.+++.-.....-.++=|.+.+..+-..+..+
T Consensus 87 ~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 87 HELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888888999999999999999999888888888888888877777777776666666665544433
No 181
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.33 E-value=1.6e+02 Score=43.21 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=53.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTS-----------LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSAL 460 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~Qaqk-----------Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~L 460 (1760)
..|..+-+++.++++.+...++....|+.=... ...++-.....++.+..++..+...++....+...+
T Consensus 223 ~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1353)
T TIGR02680 223 TDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEEREL 302 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777666554332 233334444444555555555555556566666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q psy11582 461 EKNKREINEMVESLNSNLDKVQ 482 (1760)
Q Consensus 461 e~~r~eL~~eve~Le~e~ekLk 482 (1760)
+..+..+..+++.+..+++.++
T Consensus 303 ~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 303 DARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6656666656666655555554
No 182
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.22 E-value=19 Score=39.28 Aligned_cols=92 Identities=16% Similarity=0.324 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHhHHH
Q psy11582 1279 RNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKA----AANSQSEA 1354 (1760)
Q Consensus 1279 r~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~----~l~~qeea 1354 (1760)
.+|...+..+.-+-+-....+.+|+.++.+++.....++.+..+++..+..++..-...-..+...+. .-....-.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666667777777777777777777777777777777777666555444444444443 33455667
Q ss_pred hhhhHHHHHHHHHHHH
Q psy11582 1355 MDQKNEELQHLREKVL 1370 (1760)
Q Consensus 1355 l~~~~~E~~~~~~ki~ 1370 (1760)
+++++.|...|++++.
T Consensus 135 ~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 135 LRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 183
>KOG0982|consensus
Probab=88.19 E-value=41 Score=42.06 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=113.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHhHHHhhhhH
Q psy11582 1288 IERERDDLKAMTQALKREIKDLSDA-------HTQESNKMAQAQQTMRALQEEKYALETKLSQTKA-AANSQSEAMDQKN 1359 (1760)
Q Consensus 1288 ~eRERdd~r~q~~~l~~ql~e~~~~-------~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~-~l~~qeeal~~~~ 1359 (1760)
++-+|.||-.+|.-|+++..+.+++ ..+..+-+.+|+.....+||-.|..|.+-..+-. .-.-|.|.+-+.+
T Consensus 213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~e 292 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKE 292 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999998874 4456677888999999999999998887654432 2345677777777
Q ss_pred HHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhhccchhhHHHHHHhh
Q psy11582 1360 EELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLL 1439 (1760)
Q Consensus 1360 ~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~rr~legelqR~~l~l 1439 (1760)
+|...+.++ +.+.++..+.+.-.|-.-+-.+++...++..++.++-+.|+.+--+ .|+.|..+..|
T Consensus 293 Reasle~En---lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlq-----------l~~eq~l~~rm 358 (502)
T KOG0982|consen 293 REASLEKEN---LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQ-----------LICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 777766654 4456666777777777777888888888888888887777765333 34444333333
Q ss_pred ----chHHHHhHHhHHHHHHHhhhhhh
Q psy11582 1440 ----QEKETNLHKLQERCEHQCRNITG 1462 (1760)
Q Consensus 1440 ----~~~E~e~q~l~er~~~l~~ql~~ 1462 (1760)
.-|..+.-+.++=+..|.+++.-
T Consensus 359 ~d~Lrrfq~ekeatqELieelrkeleh 385 (502)
T KOG0982|consen 359 NDILRRFQEEKEATQELIEELRKELEH 385 (502)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33566666666767777766543
No 184
>KOG4360|consensus
Probab=87.98 E-value=92 Score=40.00 Aligned_cols=182 Identities=13% Similarity=0.184 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhH---HHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHH
Q psy11582 457 KSALEKNKREINEMVESLNSNLDKVQKNNS---RLS-KINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLRE 532 (1760)
Q Consensus 457 k~~Le~~r~eL~~eve~Le~e~ekLk~~~~---eLq-rq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~ 532 (1760)
.+.|...+..+..+...|..+..-++.+-. +.+ .-+..+.+++.+....+.....++.-+...+....+.++.|-.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777777777766555432 222 2344677777888888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH-------------------
Q psy11582 533 DLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY------------------- 593 (1760)
Q Consensus 533 EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km------------------- 593 (1760)
+|+.++.++.-+..+++.+..-+.....+-..++....+++...-+.-..+.+-...|.++
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~ 320 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHGHH 320 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhhhh
Confidence 9999999999999998888666666555555556666666555555555555555566555
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 -------EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVK 638 (1760)
Q Consensus 594 -------~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~e 638 (1760)
...+.-+.|+...+.+++..+..--++-....|++-..+.....+
T Consensus 321 fp~~~~aae~i~lt~r~~~qldee~s~~~t~~~~eq~~I~e~ve~i~~ts~q 372 (596)
T KOG4360|consen 321 FPQLSLAAEKIELTMRKNLQLDEEASQLDTLEDEEQKRIFETVEQINETSQQ 372 (596)
T ss_pred CChhhHHHHHHHHhhhhhhccccccccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 333777888888888887776665456666777776655544443
No 185
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.77 E-value=1.2e+02 Score=41.00 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 633 EQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELE 668 (1760)
Q Consensus 633 ~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele 668 (1760)
..+..++..++.++..+...++.+++++..+...++
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~ 459 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIE 459 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443333333
No 186
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.90 E-value=78 Score=43.36 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=28.6
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy11582 473 SLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDA 515 (1760)
Q Consensus 473 ~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~ 515 (1760)
.++...+....+..-+..++..+..+....+.++..+..+-..
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444556666677777777777777777777777666655433
No 187
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=86.87 E-value=0.8 Score=55.32 Aligned_cols=127 Identities=16% Similarity=0.252 Sum_probs=17.9
Q ss_pred hhhHHHHHHhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhh
Q psy11582 1429 EGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLN 1508 (1760)
Q Consensus 1429 egelqR~~l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~ 1508 (1760)
-|||--+.-.|...|+-...|++.+..+...+.+++..+.++...+..++..|..-...-..|+..|..+...+++++..
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ 106 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSST 106 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Confidence 57888888888888888889999999999999999999999999999888888888888888888888888777777777
Q ss_pred hhhhhHHHHHHHHHhhhchhhhhHHHHhHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH
Q psy11582 1509 SQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALK 1569 (1760)
Q Consensus 1509 ~~~~~~~l~~lqk~l~~~e~~~r~LqerL~~~r~~l~e~k~~~~~~~~~~~~l~~r~q~Lq 1569 (1760)
+......+..||..+.+-. -.+.+++..++-.--+.. +|..|+..|+
T Consensus 107 ls~h~ssIS~Lqs~v~~ls-------TdvsNLksdVSt~aL~It-------dLe~RV~~LE 153 (326)
T PF04582_consen 107 LSDHSSSISDLQSSVSALS-------TDVSNLKSDVSTQALNIT-------DLESRVKALE 153 (326)
T ss_dssp -----------HHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhhhhh-------hhhhhhhhhhhhhcchHh-------hHHHHHHHHh
Confidence 7777666666666555433 335555555554444444 5555554444
No 188
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.67 E-value=79 Score=37.86 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11582 492 NESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLL 562 (1760)
Q Consensus 492 ~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL 562 (1760)
+...+.++.++..+...++++++.+...+..+..+...+++++......+..+.-+++.++..+.+-...|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555555555555555555555555555555555555544444444333
No 189
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.55 E-value=63 Score=44.20 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=14.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 518 VELRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 518 ~~L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
.+|..++...+..+.++...+-.++.+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444443
No 190
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.43 E-value=8.8 Score=46.95 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 400 QLHTMKKQYESADESQYNMSQQVTSLT------SQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVES 473 (1760)
Q Consensus 400 ~L~rLrdqL~EvE~e~r~Le~QaqkLk------~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~ 473 (1760)
-+..+.+++....+++.....=+.++. ..++.+..++..+..+...+...+..+..+...+...+..+..+...
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666555555444433 22333333333333333443333344444444444433333333333
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11582 474 LNSNLDKVQKNNSRLSKINESLQSEKLFLQ 503 (1760)
Q Consensus 474 Le~e~ekLk~~~~eLqrq~d~leeEk~el~ 503 (1760)
+..+....-..++.++.++...+++...+.
T Consensus 90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 191
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.27 E-value=62 Score=36.24 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHH
Q psy11582 498 EKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEME 577 (1760)
Q Consensus 498 Ek~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~ele 577 (1760)
.++.+..+-..+...++-....|..|-.+...--.-|...++++..+..+...+..+.......+..+...+......-+
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555666666666666666677777777777766666666655555555555554444444444
Q ss_pred HHHhHHHHHH
Q psy11582 578 RLLLDRSDMN 587 (1760)
Q Consensus 578 kLrsE~a~lr 587 (1760)
+++.....++
T Consensus 123 k~~~~~~~l~ 132 (177)
T PF13870_consen 123 KLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 192
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.71 E-value=28 Score=39.24 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=25.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAE 575 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~e 575 (1760)
..++..++.....+.+++..+...+.......+.+......+...+..+...+.+++..
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444433
No 193
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.38 E-value=42 Score=37.79 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 393 KLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSA 459 (1760)
Q Consensus 393 KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~ 459 (1760)
.+...+..+..+.+.+.+.++....+...+..++..+......+......++.+...+..+..+...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444444444444444444433333333333333333333333333
No 194
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.30 E-value=59 Score=38.69 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 488 LSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKL 546 (1760)
Q Consensus 488 Lqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~L 546 (1760)
|.+....+-+.-..++.....+..++...+..+.+||...+..+..|..+...++...-
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~Ks 123 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKS 123 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444455555555444444444444433333333
No 195
>PRK10698 phage shock protein PspA; Provisional
Probab=85.20 E-value=58 Score=38.10 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=72.0
Q ss_pred ChH-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11582 1270 DPE-IVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAA 1348 (1760)
Q Consensus 1270 Dp~-~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l 1348 (1760)
||+ +|+-.+|+.-..+.++...--.+-+.--.+.+++.+....+..++.+- ..+|..-.|+ =|+.+
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA---~~Al~~G~Ed---------LAr~A- 90 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA---ELALRKEKED---------LARAA- 90 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHH---------HHHHH-
Confidence 888 888888877777777644433444444444444444444444433322 1111111111 12222
Q ss_pred HHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhh
Q psy11582 1349 NSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEAR 1417 (1760)
Q Consensus 1349 ~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r 1417 (1760)
=.++.....++..|+.++.......-.|...+.+|+..+..+.+-+..|.-....++++
T Consensus 91 ----------L~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 91 ----------LIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566777888887777777777777777777777777777776666666555554
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.14 E-value=78 Score=37.74 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q psy11582 470 MVESLNSNLDKVQKNNSRLSKINESLQSEK 499 (1760)
Q Consensus 470 eve~Le~e~ekLk~~~~eLqrq~d~leeEk 499 (1760)
.|..|+..+++|+++.-.-+=+++.++.-+
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaL 48 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAAL 48 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555555566665555555555555443
No 197
>KOG0971|consensus
Probab=84.88 E-value=1.7e+02 Score=40.07 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=83.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH---
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY--- 593 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km--- 593 (1760)
.-.+.+||..+.+|++=|+.+|.-.......+.-+..+.+-....+..+......|.-.++.+-+.++++++.+|..
T Consensus 367 s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA 446 (1243)
T KOG0971|consen 367 SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA 446 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Confidence 44577788888888888888887766666666666666666666666666666666666666666666666665543
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 -------EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKG 658 (1760)
Q Consensus 594 -------~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~ 658 (1760)
...-..++..+..|++.+.+|..-.+-.|+-....++.---|..+++.+.+-+.++...+++.+.
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqe 518 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQE 518 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22223455666666666666655433333333333333334444555555555555555544443
No 198
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=84.67 E-value=1.4e+02 Score=39.06 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=8.8
Q ss_pred HHHhHhhHHHHHHHHHh
Q psy11582 565 IEKSKGDVEAEMERLLL 581 (1760)
Q Consensus 565 aE~slaeLE~elekLrs 581 (1760)
+-..+.+-+..++.|+.
T Consensus 244 A~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 244 AQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHhcCHHHHHHHHHh
Confidence 33445555555555555
No 199
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.48 E-value=56 Score=44.43 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHH
Q psy11582 466 EINEMVESLNSNL-DKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKED 525 (1760)
Q Consensus 466 eL~~eve~Le~e~-ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEe 525 (1760)
-+..-+..+..+| .+...+-.++++....+..++.....++..+..+++.++..-..|.+
T Consensus 540 lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 540 LLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566663 66666777777777777777776666665555554444433333333
No 200
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.25 E-value=31 Score=36.59 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=11.4
Q ss_pred HhhHHHHHHHHHhHHHHHHHHH
Q psy11582 569 KGDVEAEMERLLLDRSDMNEQI 590 (1760)
Q Consensus 569 laeLE~elekLrsE~a~lrdsL 590 (1760)
+.+-...++.|+..+.++++-+
T Consensus 91 lGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred hcchHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555443
No 201
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.03 E-value=2.2e+02 Score=40.73 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHH
Q psy11582 760 RLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNT 839 (1760)
Q Consensus 760 ~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~ 839 (1760)
.++++...+..++..++++ .+-+.+.|.|. ...++.+..++..++..+...+..+-..|+.-....- ..
T Consensus 177 ~lqae~~~l~~~~~~l~~~------l~s~~~~~~L~--~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~---~~ 245 (1109)
T PRK10929 177 ALQAESAALKALVDELELA------QLSANNRQELA--RLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERAL---ES 245 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH------HhccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 3345555555555555544 22344445552 3333445666666666666666666655544321111 01
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHH
Q psy11582 840 INTLREQ---LNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTV 903 (1760)
Q Consensus 840 i~~l~eE---L~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~l 903 (1760)
.....++ +...-.+.-+....+-..+......++.+..+.......++.+....+-.+|.++-+
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 246 TELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111011 111111222334444455555555555555555555555554444444444444433
No 202
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.67 E-value=91 Score=35.97 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 532 EDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQL 611 (1760)
Q Consensus 532 ~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eql 611 (1760)
+||.-++..|+.+..+...-..++..+... +.++...++........+++++......++..+.+++....++
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q-------l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQ-------LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence 344555555555544444443333333322 2222233333333333444444444445555555555444444
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q psy11582 612 ASLRSDKESLEAILFDTQSHLEQ 634 (1760)
Q Consensus 612 a~LrseKesLEs~Lfe~Qq~l~q 634 (1760)
.-++-....|+..+..+...+..
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHh
Confidence 44444444444444444444433
No 203
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.16 E-value=95 Score=35.82 Aligned_cols=47 Identities=28% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 491 INESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIA 537 (1760)
Q Consensus 491 q~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~l 537 (1760)
.+....-+++-..+++.+..++...+...+..++.....|+..+..+
T Consensus 60 ~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 60 SLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 33444445555555666666666666666666666666666666554
No 204
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.62 E-value=32 Score=40.42 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 597 IEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 597 l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
++..+.-+..+.+++..|..|+......|..+.+++..++....+.+.+.......+..+.+++..|..+++.-+..
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888888999999999999999999999988888888888888888888888887777765443
No 205
>KOG0804|consensus
Probab=82.56 E-value=51 Score=41.60 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
...++.+-.+...+..+..++.+.+...+..+...+..+..+..++..+...+..+...+.+..+.+..+..........
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s 432 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGS 432 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555667777888888888888888888888888888888888888888888888888777777777777
Q ss_pred HHHHHHHHHHHHhh
Q psy11582 674 AQETKASLVQQASG 687 (1760)
Q Consensus 674 ~~~~~~~l~~ql~q 687 (1760)
....++.|..|+..
T Consensus 433 ~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 433 KDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777666643
No 206
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.55 E-value=43 Score=39.62 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=86.7
Q ss_pred HHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 1023 TLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNK 1102 (1760)
Q Consensus 1023 eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~lr~kl~~~~e~~r~~~r 1102 (1760)
..+.++.....++.. +..++..+.+++..++.....+.+.+.+.++++..+.+++..-....+.+.-
T Consensus 39 ~sQ~~id~~~~e~~~-------------L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQE-------------LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555 7777777777777777777787777888888888888887766666666666
Q ss_pred hhHHHHHhhhhHHHHHHH-HhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHhhh
Q psy11582 1103 NLEDLVKECEEKEVVLLD-LCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALR 1167 (1760)
Q Consensus 1103 ~lee~~Ke~~~L~v~L~~-l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s~Lrr~lg~~ 1167 (1760)
-+.... ..|..-+.. +=-....=..||..|.+-+..++.. +-.++.+|..++.-+..++
T Consensus 106 ~m~~m~---~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~---~~ek~r~vlea~~~E~~yg 165 (251)
T PF11932_consen 106 LMEQMI---DELEQFVELDLPFLLEERQERLARLRAMLDDADVS---LAEKFRRVLEAYQIEMEYG 165 (251)
T ss_pred HHHHHH---HHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHHHHHhC
Confidence 666666 555554442 2223334457788888888877665 4567888888888888863
No 207
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=82.37 E-value=1.7e+02 Score=38.07 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 803 AIQDRLSQVLKELEEEKCTLDRIKRES 829 (1760)
Q Consensus 803 ~L~ekL~~~q~eL~~a~~eler~rrea 829 (1760)
+|-+.+..+-+.+.++..-+..+.-..
T Consensus 348 ile~sv~~l~~~lkDLd~~~~aLs~rl 374 (531)
T PF15450_consen 348 ILEDSVAELMRQLKDLDDHILALSWRL 374 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345556666666777766666666554
No 208
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.35 E-value=1.6e+02 Score=37.71 Aligned_cols=30 Identities=3% Similarity=0.106 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 573 EAEMERLLLDRSDMNEQISKYEITIEANDK 602 (1760)
Q Consensus 573 E~elekLrsE~a~lrdsL~Km~v~l~alEr 602 (1760)
...|.+-+.+...++-.|.|+.+..-.++.
T Consensus 403 qk~LqEsr~eKetLqlelkK~k~nyv~LQE 432 (527)
T PF15066_consen 403 QKHLQESRNEKETLQLELKKIKANYVHLQE 432 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHH
Confidence 333333344444444444444444333333
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.35 E-value=36 Score=39.96 Aligned_cols=99 Identities=28% Similarity=0.274 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHH
Q psy11582 452 MLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLR 531 (1760)
Q Consensus 452 ~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr 531 (1760)
.++.....+++....+..+++.++.+- .-+.++.++.+.+..|+.....+|.....|+...+.-|.+++.......
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee----~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEE----KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666555433 5566777777777777777777777777777766666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 532 EDLLIANEDLKNAKLAKELLEQN 554 (1760)
Q Consensus 532 ~EL~~lrE~L~~~~Lere~Leqe 554 (1760)
..+..+-+.+..+..++|.+..+
T Consensus 81 ~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 81 EKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555433
No 210
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.26 E-value=71 Score=38.94 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=100.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMV 471 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~ev 471 (1760)
+|+-...+-|..++.-+.+-..+...|.-|-++|+.++-....-.-..+.+.+++...+..+..+..-++.++..+..+.
T Consensus 78 rk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 78 RKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444555555555566777777777888887777777667778888888888888888888888888888888
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 472 ESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIA 537 (1760)
Q Consensus 472 e~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~l 537 (1760)
...+.+-..|-++..+.-+-...+.+++.. .+-.-.+-++..|--|-.||.|+..|--|+.++
T Consensus 158 ~Ekeeesq~LnrELaE~layqq~L~~eyQa---tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 158 GEKEEESQTLNRELAEALAYQQELNDEYQA---TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777766666665555555554433 333345667777888888888888877776554
No 211
>KOG0963|consensus
Probab=82.21 E-value=1.8e+02 Score=38.43 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q psy11582 758 LSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGR 832 (1760)
Q Consensus 758 ~~~~~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~ 832 (1760)
+..++..+..|+.-|...+.+.-. +++.-++-...+.+|=..++..|.-+++-+-.+..+.+.++......
T Consensus 198 ~~~le~ki~~lq~a~~~t~~el~~----~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 198 LEELEKKISSLQSAIEDTQNELFD----LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555665555555555444 55555566777888888888888888888888887888777766543
No 212
>KOG4360|consensus
Probab=82.20 E-value=1.7e+02 Score=37.89 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=54.3
Q ss_pred HHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 565 IEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEH 644 (1760)
Q Consensus 565 aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~ 644 (1760)
..+.+.++...+..+..+...+.+.+.....++.-+..++-.+.+++--++-+|+-+..-|......-.++.++...++.
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444444445555555444555555555555555555555666666666666655555566666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11582 645 EVQELLVKQESLKGQVVRLN 664 (1760)
Q Consensus 645 E~q~l~~~~E~Lq~el~rL~ 664 (1760)
.+.+.....+.-+.++.+|+
T Consensus 283 kyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 283 KYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555443
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.81 E-value=45 Score=40.56 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHh
Q psy11582 1276 KGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAM 1355 (1760)
Q Consensus 1276 ~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal 1355 (1760)
.|||+.---|.+-|-|=+.++.|...|+.+|.-+.+-..+..+++++|+.-++-+.|+...++..|...+.....=+|.-
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 46666666777888888999999999999999999999999999999999999999999999999999888877777777
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcch
Q psy11582 1356 DQKNEELQHLREKVLTLELTLSNVS 1380 (1760)
Q Consensus 1356 ~~~~~E~~~~~~ki~~le~~~~~~e 1380 (1760)
....+|...+..-+.+|=-.-+++=
T Consensus 165 q~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 165 QTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777777666665555544444443
No 214
>PRK11281 hypothetical protein; Provisional
Probab=81.73 E-value=2.7e+02 Score=40.02 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHH
Q psy11582 449 NIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNR 528 (1760)
Q Consensus 449 ~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S 528 (1760)
.+..+..+....+.....+++++-.++...++.+....+....+..+...+....... .. ..+.+...|+....
T Consensus 129 ~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~-~~-----l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 129 RLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGG-KA-----LRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCC-Cc-----CCHHHHHHHHHHHH
Confidence 3333444444444444444444444444445555444444444444443332210000 00 11222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHH
Q psy11582 529 RLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDM 586 (1760)
Q Consensus 529 ~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~l 586 (1760)
.+..++...+..|.....-.+.+..+.+.....+...+..+..|...++..|.+.++.
T Consensus 203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~ 260 (1113)
T PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEK 260 (1113)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444555555555556667777777777777777766665555
No 215
>KOG0992|consensus
Probab=80.35 E-value=1.9e+02 Score=37.32 Aligned_cols=90 Identities=22% Similarity=0.235 Sum_probs=58.4
Q ss_pred HHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy11582 550 LLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY--EITIEANDKELQRLQEQLASLRSDKESLEAILFD 627 (1760)
Q Consensus 550 ~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km--~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe 627 (1760)
+..+....+...++-.+..+. -.+++++......-.+|+++ ..++.++.++...+++++..++......+++.-
T Consensus 187 ~~qq~e~~l~t~~a~~e~~nr---h~~erlk~~~~s~~e~l~kl~~EqQlq~~~~ehkllee~~~rl~~~~s~VegS~S- 262 (613)
T KOG0992|consen 187 STQQEENLLTTTLAAVEEENR---HLKERLKIVEESRLESLGKLNSEQQLQALIREHKLLEEHLERLHLQLSDVEGSWS- 262 (613)
T ss_pred HHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-
Confidence 333444444555555554444 56778899988999999988 456888889999999999988887766663321
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11582 628 TQSHLEQSDVKKEQLEHE 645 (1760)
Q Consensus 628 ~Qq~l~qle~ekeqLE~E 645 (1760)
..+..++..+++++..
T Consensus 263 --~~~l~~ek~r~~lee~ 278 (613)
T KOG0992|consen 263 --GQNLALEKQRSRLEEQ 278 (613)
T ss_pred --hhHHHHHHHHHHHHHH
Confidence 2334444444444443
No 216
>KOG0804|consensus
Probab=79.65 E-value=82 Score=39.95 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 393 KLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVE 472 (1760)
Q Consensus 393 KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve 472 (1760)
.|+.+--.-+-|..+-.-++..+-.+++ .++......++....+++.+......+...+..++.....++..+.
T Consensus 319 ~~~~s~ll~sqleSqr~y~e~~~~e~~q------sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~ 392 (493)
T KOG0804|consen 319 ELEYSPLLTSQLESQRKYYEQIMSEYEQ------SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLK 392 (493)
T ss_pred EeecchhhhhhhhHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333344443344444444443 2455555556667777788888888899999999999999999999
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 473 SLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELD 507 (1760)
Q Consensus 473 ~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~ 507 (1760)
.+..++..++-.|.-|.+..+.+.+.+.+++....
T Consensus 393 k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 393 KCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887776553
No 217
>KOG4809|consensus
Probab=79.47 E-value=2.1e+02 Score=37.31 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=46.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy11582 520 LRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY 593 (1760)
Q Consensus 520 L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km 593 (1760)
|++.+..+..|++-+..++-.+....-+.--|...-..+..+..+..+.+.+++..++..+.++.++...|.+.
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444445555555677777778888888888888888888887777665
No 218
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.13 E-value=1.8e+02 Score=36.28 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHH
Q psy11582 1357 QKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEK 1404 (1760)
Q Consensus 1357 ~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~ 1404 (1760)
+.+.+...+..++..-..=+.+...|+-.=.+.+..+......+-+|.
T Consensus 267 ~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 267 ELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHH
Confidence 334444455555555556666777777777777777777777766653
No 219
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.96 E-value=76 Score=33.78 Aligned_cols=34 Identities=9% Similarity=0.301 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 403 TMKKQYESADESQYNMSQQVTSLTSQLDQTKAQL 436 (1760)
Q Consensus 403 rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l 436 (1760)
++...+.-.+.++.++..++..+..+.+.+..++
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444
No 220
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=78.39 E-value=1.6e+02 Score=35.25 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 523 KEDMNRRLREDLLIANEDLKNAKLAK 548 (1760)
Q Consensus 523 LEek~S~Lr~EL~~lrE~L~~~~Ler 548 (1760)
+.......-.|+..+..-|+.+....
T Consensus 144 f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 144 FTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555554443
No 221
>KOG0982|consensus
Probab=78.31 E-value=2e+02 Score=36.45 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=82.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy11582 478 LDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEE 557 (1760)
Q Consensus 478 ~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~e 557 (1760)
-.+++.+|..|...+..+++.+.+..........+-.+.++.|-..-++...+-.|....+ +..+..+...+.....-
T Consensus 245 ~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr--~qqleeentelRs~~ar 322 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMR--DQQLEEENTELRSLIAR 322 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888887777766667777777777777777777666655443 33344444444444444
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11582 558 MQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAI 624 (1760)
Q Consensus 558 l~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~ 624 (1760)
+.....++..........++-++.+.-..++--..|-..+--.+++.-.+.+=+.+++.+++-+.-.
T Consensus 323 lksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 323 LKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333344444444444444443333343333334555555555556666665554433
No 222
>KOG1899|consensus
Probab=77.23 E-value=2.1e+02 Score=37.80 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy11582 872 ISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKD 951 (1760)
Q Consensus 872 leeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~elrr~Ladle~Eke~lq~sl~E 951 (1760)
...+++.+..+..+.|-|.-|..++-+.....-. +|.+++-.++.-+..+....+.+.+
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgE-------KIrDLE~cie~kr~kLnatEEmLQq-------------- 164 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGE-------KIRDLETCIEEKRNKLNATEEMLQQ-------------- 164 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhchHHHHHHH--------------
Confidence 3466777777777777777777777666654443 3444444433333333322211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy11582 952 LREMVKKVESEKRDQARTIDEGLQKIAVRF-GDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKF 1030 (1760)
Q Consensus 952 Lre~Lkk~Ese~~eler~iEe~~qkl~~L~-l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~ 1030 (1760)
.+-. + .++|.. - + ++.++++|+-.+..+|++..+....+...+..+..+. +..+..
T Consensus 165 ---ells----r----tsLETq---K---lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn------~~kv~e 221 (861)
T KOG1899|consen 165 ---ELLS----R----TSLETQ---K---LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN------QSKVGE 221 (861)
T ss_pred ---HHHh----h----hhHHHH---H---hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH------HHHHHH
Confidence 1100 0 111111 1 3 4777777777777777766555555444443333322 111222
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy11582 1031 LEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQS 1093 (1760)
Q Consensus 1031 lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~lr~kl~~~ 1093 (1760)
++.++-. -+.-+..-+.+++.|.++++- -..|++++.+.+.+.
T Consensus 222 ~~~erlq-------------ye~klkstk~e~a~L~Eq~~e-------K~~e~~rl~~~lv~~ 264 (861)
T KOG1899|consen 222 VVQERLQ-------------YETKLKSTKGEMAPLREQRSE-------KNDEEMRLLRTLVQR 264 (861)
T ss_pred HHHHHHH-------------HHhhcccccchhhhHHHHHhh-------hhhHHHHHHHHHHHH
Confidence 1222222 222333344555555556555 777888877777643
No 223
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=77.13 E-value=2.2e+02 Score=36.31 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQ 431 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~ 431 (1760)
.+...+......+.+++.+.+.++...+.++...+.+..-
T Consensus 164 ~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 164 LKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6778888889999999999999999999999886665433
No 224
>KOG0249|consensus
Probab=77.02 E-value=2.7e+02 Score=37.38 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 793 ALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRES 829 (1760)
Q Consensus 793 aL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea 829 (1760)
.|-.+-.|+++-.++.+.+-.++..++..++.++.+.
T Consensus 203 rlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k 239 (916)
T KOG0249|consen 203 RLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDK 239 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667777777888888888888877777777663
No 225
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.62 E-value=28 Score=34.10 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHH
Q psy11582 458 SALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMN 527 (1760)
Q Consensus 458 ~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~ 527 (1760)
..|+..++..-..|.-|..+++.|+..|..+....+.+.....++..+......+...-+.+|++|-.+.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777888888889999999999999999999999998888888888888888888888887776553
No 226
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.07 E-value=1.6e+02 Score=34.10 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=61.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALV-KNIEMLRVEKSALEKNKREINEM 470 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~-~~le~L~~Ek~~Le~~r~eL~~e 470 (1760)
.-+...++++..++..+..+-...+.+++++..+......+......+ +..-. +-....-..+..++..+..+..+
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A---l~~g~edLAr~al~~k~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA---LAAGREDLAREALQRKADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555444444444332111 11111 11122344555666666666667
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 471 VESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDR 508 (1760)
Q Consensus 471 ve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r 508 (1760)
+......+++++..+..++..+..++.++..+......
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766666666655543
No 227
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.72 E-value=1.7e+02 Score=40.16 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11582 857 LKTRTEEEKAILERKIS 873 (1760)
Q Consensus 857 a~~~lq~El~~Leeqle 873 (1760)
+...++.....|..+++
T Consensus 559 ar~ei~~rv~~Lk~~~e 575 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKE 575 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 228
>PRK11281 hypothetical protein; Provisional
Probab=75.64 E-value=3.9e+02 Score=38.49 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=80.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQ-------------LDQTKAQLAQVGREKEALVKNIEMLRVEKS 458 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~E-------------l~~l~~~l~~a~~E~~~l~~~le~L~~Ek~ 458 (1760)
.+.+..+.....+++.+....+..+...+.+..++.. ...+...+.+...+....+..+...+++..
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666654442 122444444455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhH
Q psy11582 459 ALEKNKREINEMVESLNSNLDKVQKN---------------NSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGK 523 (1760)
Q Consensus 459 ~Le~~r~eL~~eve~Le~e~ekLk~~---------------~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~L 523 (1760)
.++...+..+..+..-...+..+++. ...++.+...+.-+......++.....-.+..+.+.+.+
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~ 232 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYL 232 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 55554444444443333333333321 223344444444445555555555555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11582 524 EDMNRRLREDLLIANEDLKN 543 (1760)
Q Consensus 524 Eek~S~Lr~EL~~lrE~L~~ 543 (1760)
..+...+..++..+.+.++.
T Consensus 233 ~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 233 TARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555
No 229
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=74.82 E-value=1.8e+02 Score=34.31 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 570 GDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLA 612 (1760)
Q Consensus 570 aeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla 612 (1760)
.-|+..+.....+....+..+++.......+++++..+.....
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~ 69 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAE 69 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333333
No 230
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.28 E-value=1.7e+02 Score=33.75 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=36.4
Q ss_pred hhHHHHHHHhHHHh-hhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhh
Q psy11582 1342 SQTKAAANSQSEAM-DQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTE 1415 (1760)
Q Consensus 1342 ~sa~~~l~~qeeal-~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E 1415 (1760)
..|..+|..-.|.| +..=.+...+...+..|+.++.........|...+..+...+..+...+..|.-....+.
T Consensus 72 ~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 72 KQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433222 333344444555555555555555555555555555555555555555555544444333
No 231
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=74.23 E-value=1.9e+02 Score=34.10 Aligned_cols=135 Identities=9% Similarity=0.132 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHH
Q psy11582 446 LVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKED 525 (1760)
Q Consensus 446 l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEe 525 (1760)
|...+.........++..+..++..+..+..-.+..+..+.+....+..+...+....... +-....-+.-.|.-
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~-----~~~l~~a~~~~l~a 157 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNG-----ESPLSEAQRWLLQA 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----cchhhHHHHHHHHH
Confidence 3334444444444555555555555555555555555555555555554444433221000 01222333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHH
Q psy11582 526 MNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSD 585 (1760)
Q Consensus 526 k~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~ 585 (1760)
....+..++...+-.+.....-.+++...++.+...+..++..+..|...++..+-..++
T Consensus 158 e~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae 217 (240)
T PF12795_consen 158 ELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAE 217 (240)
T ss_pred HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444555555555555555555556666666666655544443
No 232
>KOG0249|consensus
Probab=72.87 E-value=3.1e+02 Score=36.92 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHH
Q psy11582 644 HEVQELLVKQESLKGQVVRLNKELED---TEKRAQETKASLVQQASGLD 689 (1760)
Q Consensus 644 ~E~q~l~~~~E~Lq~el~rL~~ele~---~~~~~~~~~~~l~~ql~q~E 689 (1760)
++.+..+..++.|-.+++.+.+.+++ ...++..+++.|.+.+.|..
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555556666666666666665554 45667777778877777766
No 233
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.46 E-value=35 Score=39.22 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 436 LAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506 (1760)
Q Consensus 436 l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el 506 (1760)
+.|++..+..|+..++.+-.++..|-+...+++.+++..+..+..+...++.|+..++.+.+++..+....
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 34566666777777777777777777777777777777777777777777777777766666666655444
No 234
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.95 E-value=29 Score=32.62 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=41.1
Q ss_pred HHHHhhhchhhhhHHHHhHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHhhh
Q psy11582 1519 LQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDLS 1576 (1760)
Q Consensus 1519 lqk~l~~~e~~~r~LqerL~~~r~~l~e~k~~~~~~~~~~~~l~~r~q~Lq~~l~d~e 1576 (1760)
||.+|.+==..|+.++++|..++.+.-.....+. +.-.+++.|..++..+.
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLq-------eaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQ-------EAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 6777777777899999999999999988888888 88888888884444433
No 235
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=70.14 E-value=7.6 Score=47.27 Aligned_cols=118 Identities=14% Similarity=0.225 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-------HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 531 REDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKS-------KGDVEAEMERLLLDRSDMNEQISKYEITIEANDKE 603 (1760)
Q Consensus 531 r~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~s-------laeLE~elekLrsE~a~lrdsL~Km~v~l~alEre 603 (1760)
.++|..++++|..++-....|......+...+..++.. +++....++.+...+..++.+++.+...+..+...
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ 106 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSST 106 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Confidence 34555555555555444444444433333333333333 33333333333333333444444433333333333
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 604 LQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQE 648 (1760)
Q Consensus 604 ~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~ 648 (1760)
+......|..|.+....+++.+-.++..+....-.+..|+..+..
T Consensus 107 ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 107 LSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 333444444444444444444444444444444444444443333
No 236
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.91 E-value=64 Score=37.37 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDT 670 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~ 670 (1760)
.+++..+++++..+..+++.++.+-+ +...++++.+.........|+.+++.+....+.++.++..+..+.+..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555556655554422 333344444455555555566666666555555555555554444443
No 237
>KOG2129|consensus
Probab=69.81 E-value=3.1e+02 Score=34.69 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 650 LVKQESLKGQVVRLNKELEDTEKRAQ 675 (1760)
Q Consensus 650 ~~~~E~Lq~el~rL~~ele~~~~~~~ 675 (1760)
...+..|+.+|.|++..+-...+..+
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777776666555444443
No 238
>KOG0993|consensus
Probab=69.32 E-value=3.1e+02 Score=34.57 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~ 673 (1760)
...-+-+.++...|...+..+-..++.|+..+...+.++.. .+.+|-.+.+.-..-..+++++|.+++.++.-+++.
T Consensus 291 dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~---q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma~ 367 (542)
T KOG0993|consen 291 DTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITV---QRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQMAR 367 (542)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888889999999999999999999998888766654 455666777777788889999999999998888888
Q ss_pred HHHHHHHHHHHH
Q psy11582 674 AQETKASLVQQA 685 (1760)
Q Consensus 674 ~~~~~~~l~~ql 685 (1760)
+-.....+.-.+
T Consensus 368 lv~a~e~i~~e~ 379 (542)
T KOG0993|consen 368 LVVASETIADED 379 (542)
T ss_pred HHHHHHHHHHHH
Confidence 776666644433
No 239
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=69.12 E-value=1.9e+02 Score=36.38 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=7.3
Q ss_pred HhhHHHHHHHHh
Q psy11582 819 KCTLDRIKRESA 830 (1760)
Q Consensus 819 ~~eler~rrea~ 830 (1760)
+.|+||+--..+
T Consensus 197 klEvERV~PqLK 208 (359)
T PF10498_consen 197 KLEVERVLPQLK 208 (359)
T ss_pred HHHHHHHhhhhe
Confidence 557777755554
No 240
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.32 E-value=81 Score=41.41 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHHHHHhHHH
Q psy11582 207 SEHARLLALWRDVVDIKRSFTA 228 (1760)
Q Consensus 207 ~Eh~rlL~LWRevv~~Rr~f~E 228 (1760)
+..++..+||+-+ |+|+-.
T Consensus 87 g~~g~~~sL~~lA---rr~G~~ 105 (652)
T COG2433 87 GRPGEQESLWELA---RRHGIR 105 (652)
T ss_pred CCCCCcchHHHHH---HHhCCC
Confidence 3445566677643 444433
No 241
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.22 E-value=58 Score=31.15 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHH
Q psy11582 459 ALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDM 526 (1760)
Q Consensus 459 ~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek 526 (1760)
.|+..++..-.-|.-|+.+++.|+-.|+.|......++...+.+..+-.....+-.--+.+|+.|-.|
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666677778888888888888877777777777777777666666666666666665443
No 242
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.08 E-value=2.8e+02 Score=33.14 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=4.3
Q ss_pred HHHHHHHhh
Q psy11582 1158 STLRRIAAL 1166 (1760)
Q Consensus 1158 s~Lrr~lg~ 1166 (1760)
+.|-..||+
T Consensus 209 ~lls~yL~v 217 (302)
T PF10186_consen 209 SLLSRYLGV 217 (302)
T ss_pred HHHHHHhCC
Confidence 334455554
No 243
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.39 E-value=4.1e+02 Score=34.87 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhh--HHHHHHHHHhHHHHHH-HHHHHH---------------
Q psy11582 532 EDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGD--VEAEMERLLLDRSDMN-EQISKY--------------- 593 (1760)
Q Consensus 532 ~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slae--LE~elekLrsE~a~lr-dsL~Km--------------- 593 (1760)
++-+.-+--|......++-|-++.......++++|..++- |+..+.+++-+....+ ..+.+-
T Consensus 288 ~~a~~n~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~ 367 (518)
T PF10212_consen 288 EEALANRRILLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSV 367 (518)
T ss_pred HHHHhhhHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhh
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11582 594 ----------------------------------------EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLE 633 (1760)
Q Consensus 594 ----------------------------------------~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~ 633 (1760)
..+-.-+..-.. ..|..|-.++.-.++...-......
T Consensus 368 l~~~~e~~se~s~~~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~---~RI~eLt~qlQ~adSKa~~f~~Ec~ 444 (518)
T PF10212_consen 368 LSEASEQQSEASSQSVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYM---SRIEELTSQLQHADSKAVHFYAECR 444 (518)
T ss_pred hcccccccccccccccccccccccccccccccccccCCchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy11582 634 QSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGL 688 (1760)
Q Consensus 634 qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~ 688 (1760)
.+..+....+.+...+...+....+.+.+|++++++...--+..+..|+..++.+
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasm 499 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.03 E-value=99 Score=40.69 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 418 MSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEM 452 (1760)
Q Consensus 418 Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~ 452 (1760)
++..+++|..+...|...++.+.+++..|...++.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 245
>KOG4677|consensus
Probab=65.05 E-value=3.9e+02 Score=34.18 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 585 DMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLN 664 (1760)
Q Consensus 585 ~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~ 664 (1760)
..+.++.++.|+..-.-.++..+.-++.-||+++..+|..--+.+ ++...++-.+--+.+.+..-+..+...++|++
T Consensus 306 as~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~---s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~ 382 (554)
T KOG4677|consen 306 ASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLE---SAGQTQIFRKHPRKASILNMPLVLTLFYECFY 382 (554)
T ss_pred hHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhHHHHHHhhhHhhhhhhchHHHHHHHHHHH
Confidence 345566666777777777777777777778888777777666554 55566666777788888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11582 665 KELEDTEKRAQETKASLVQQ 684 (1760)
Q Consensus 665 ~ele~~~~~~~~~~~~l~~q 684 (1760)
.+.+...+-+-+.....+-+
T Consensus 383 ~e~e~~~~~~~r~~~~~qsk 402 (554)
T KOG4677|consen 383 HETEAEGTFSSRVNLKKQSK 402 (554)
T ss_pred HHHHHhhhhhhhccchhhcc
Confidence 99998888777666654333
No 246
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.45 E-value=3.7e+02 Score=33.73 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEM 576 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~el 576 (1760)
+.+|..+|.+.+.|..+.+.++..-.++..+.+.....++.+...|-.+...+......+
T Consensus 57 e~~lq~~e~ra~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~rrdl~rinasf 116 (442)
T PF06637_consen 57 ESRLQATEQRADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNARRDLDRINASF 116 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 466777777777777777777777666666666666666665555554444444433333
No 247
>KOG1899|consensus
Probab=64.23 E-value=4.7e+02 Score=34.79 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q psy11582 465 REINEMVESLNSNLDKVQKN 484 (1760)
Q Consensus 465 ~eL~~eve~Le~e~ekLk~~ 484 (1760)
..++..+..|+.+.+.|...
T Consensus 107 ~~yQerLaRLe~dkesL~LQ 126 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQ 126 (861)
T ss_pred hHHHHHHHHHhcchhhheeh
Confidence 45566666666666665553
No 248
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.12 E-value=73 Score=35.42 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11582 456 EKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSD 512 (1760)
Q Consensus 456 Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E 512 (1760)
....+......+..++..|...++.|...+..|.+....++++|..+..=++|+.+-
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777777777777788888888899999999999888777653
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.54 E-value=1.9e+02 Score=34.21 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q psy11582 439 VGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSE 498 (1760)
Q Consensus 439 a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeE 498 (1760)
+..+++.+...++.+......++..+...+.++..|+.+++.+.....++.-.+..+-+.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444433333333333
No 250
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.22 E-value=87 Score=36.32 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11582 804 IQDRLSQVLKELEEEKCTLDRIKRE 828 (1760)
Q Consensus 804 L~ekL~~~q~eL~~a~~eler~rre 828 (1760)
+.++|-.++++++.++.++..+..+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455555666666555555554433
No 251
>PF13166 AAA_13: AAA domain
Probab=62.07 E-value=5.5e+02 Score=34.89 Aligned_cols=103 Identities=11% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy11582 557 EMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSD 636 (1760)
Q Consensus 557 el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle 636 (1760)
.+...+..+...+.+....+..+..+...+++.+.... +......+..+...+..+......++..+..++..+..+.
T Consensus 367 ~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 444 (712)
T PF13166_consen 367 ELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHL--IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIE 444 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443332221 1122222222333333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 637 VKKEQLEHEVQELLVKQESLKGQVV 661 (1760)
Q Consensus 637 ~ekeqLE~E~q~l~~~~E~Lq~el~ 661 (1760)
.+...|+..........+.+...+.
T Consensus 445 ~~i~~l~~~~~~~~~~~~~iN~~L~ 469 (712)
T PF13166_consen 445 KEIKELEAQLKNTEPAADRINEELK 469 (712)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 252
>PRK11519 tyrosine kinase; Provisional
Probab=61.88 E-value=1.5e+02 Score=40.50 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLD 430 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~ 430 (1760)
.|...+...+..+.+++.+++.++...+..++..+.+..
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777788888888888888888888888888887666544
No 253
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.45 E-value=69 Score=30.87 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 610 QLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELED 669 (1760)
Q Consensus 610 qla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~ 669 (1760)
+++.|+...+.+...+.-.+..+..+..+++.....+...-..+..|+.+++.+.++++.
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444555555555555555555555555443
No 254
>PRK10869 recombination and repair protein; Provisional
Probab=61.14 E-value=5.3e+02 Score=34.37 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy11582 440 GREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNN 485 (1760)
Q Consensus 440 ~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~ 485 (1760)
..+|..+-..+..+..+...+.....+...+++.++-+++.+...+
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~ 201 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFA 201 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333333344444444444444444555555555555555555443
No 255
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.72 E-value=87 Score=30.19 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHH
Q psy11582 522 GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMN 587 (1760)
Q Consensus 522 ~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lr 587 (1760)
.|+.-++.|+..|..+..++.........|..+++.....|..+=..+.+|..+++.++.+...++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667777777777777777777888888888877777777777777777777776666655443
No 256
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=60.58 E-value=1.5e+02 Score=30.23 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHH
Q psy11582 1281 LMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNE 1360 (1760)
Q Consensus 1281 l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~ 1360 (1760)
|.++|..++.++++...++..+...+..++.-+.+....+.+--+-.-++.-.+..++..+......+.-+-+.+.+...
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35788999999999999999999999998888888888888888888888888888888888877777777777666655
Q ss_pred HHHHHHHHHHHHHHh
Q psy11582 1361 ELQHLREKVLTLELT 1375 (1760)
Q Consensus 1361 E~~~~~~ki~~le~~ 1375 (1760)
=-..+..+|..+|.+
T Consensus 81 ~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 81 TEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHhhcc
Confidence 444444555555543
No 257
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=60.56 E-value=4e+02 Score=32.81 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 400 QLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLD 479 (1760)
Q Consensus 400 ~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~e 479 (1760)
.+.-+++.|.++++-++ .+-+...++-.+...|.=.++.|......++..+..++.++.....+++
T Consensus 78 s~r~lk~~l~evEekyr--------------kAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elE 143 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYR--------------KAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELE 143 (302)
T ss_pred cHHHHHHHHHHHHHHHH--------------HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665543 3333333333333333333444444444455555555555566666667
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11582 480 KVQKNNSRLSKINESLQSEKLFLQN 504 (1760)
Q Consensus 480 kLk~~~~eLqrq~d~leeEk~el~~ 504 (1760)
.+|..+..+..+++.+++++.....
T Consensus 144 r~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 144 RQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766654433
No 258
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.53 E-value=3.2e+02 Score=34.43 Aligned_cols=138 Identities=12% Similarity=0.198 Sum_probs=61.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 929 LDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELL 1008 (1760)
Q Consensus 929 ~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~qkl~~L~l~qE~aeLrnqLrelE~e~~elr~eLq 1008 (1760)
.+|+.-+.....-...+.....+....|.++..++......|...+.-| .+....+....+.+...+..+.....
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i-----N~qle~l~~eYr~~~~~ls~~~~~y~ 290 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI-----NNQLEPLIQEYRSAQDELSEVQEKYK 290 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555443333333333333322 33333333444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHH
Q psy11582 1009 QAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSL 1071 (1760)
Q Consensus 1009 eLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~ 1071 (1760)
.+...+..+..++.++...+.....+=++++-..+=-.-|-++.+=+..|+.++..++=.+-+
T Consensus 291 ~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 291 QASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 445555555555555555444432222222111111122333555566666666665554444
No 259
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.85 E-value=1.5e+02 Score=32.01 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHH
Q psy11582 838 NTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDT 902 (1760)
Q Consensus 838 ~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~ 902 (1760)
+.++.+...|....+.+..++..+...++.+...+++...-...+..++..++..+.-....++.
T Consensus 43 ~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 43 DAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56667777777777777777777777777777777777777666666666666664333333333
No 260
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.52 E-value=3.2e+02 Score=31.38 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHH
Q psy11582 470 MVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKE 524 (1760)
Q Consensus 470 eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LE 524 (1760)
....++..+-.+...+.+++++...+...++....+|.+...+.+.....+...+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566666666666666666555544444444444444333
No 261
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.22 E-value=2.4e+02 Score=30.39 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11582 460 LEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLF 501 (1760)
Q Consensus 460 Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~e 501 (1760)
+...+..+...++.++..++++...+..+..+++.+......
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 262
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.46 E-value=4.9e+02 Score=33.16 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=22.1
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 562 LAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ 605 (1760)
Q Consensus 562 L~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~ 605 (1760)
+..+...+.+++..+..+...+.+-.-.+..+..++..+...+.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444444444555555555443
No 263
>KOG0239|consensus
Probab=58.43 E-value=6.4e+02 Score=34.47 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11582 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLE 622 (1760)
Q Consensus 543 ~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLE 622 (1760)
.+..+.+.+..+...+...|........+....+.....+...+.+.+- .+......+..+.......+..++.|.
T Consensus 172 ~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~ 247 (670)
T KOG0239|consen 172 LALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQ 247 (670)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHH
Confidence 3344444455555555555555555555555554444444444433322 233333333333333333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 623 AILFDTQSHLEQSDVKKEQLEHEVQELLVKQESL 656 (1760)
Q Consensus 623 s~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~L 656 (1760)
..+.........+......+-.++++.....-.+
T Consensus 248 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 248 QELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333334444444444444444433333
No 264
>KOG1850|consensus
Probab=57.97 E-value=4.4e+02 Score=32.41 Aligned_cols=206 Identities=18% Similarity=0.187 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hhHHHHHHHHHHHHHHH
Q psy11582 459 ALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVEL-RGKEDMNRRLREDLLIA 537 (1760)
Q Consensus 459 ~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L-~~LEek~S~Lr~EL~~l 537 (1760)
.++..+.+++..+..-...-++++..|.+|...+..+-++|...+.-|+.....++ ....+ ..-.-...-+...+..+
T Consensus 113 ~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~ 191 (391)
T KOG1850|consen 113 QFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEA 191 (391)
T ss_pred HHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666777888888888888887777777777766555555 22222 22222334444555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 538 NEDLKNAKLAKELLEQNKEEMQ-TLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRS 616 (1760)
Q Consensus 538 rE~L~~~~Lere~Leqek~el~-~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~Lrs 616 (1760)
..+-+...++.+.+-....+-. ..=..+...+.......+.+.+-.+---..|.++.++++-+-+.+..++++....++
T Consensus 192 ~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~ 271 (391)
T KOG1850|consen 192 SIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRT 271 (391)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666665533221111 000111111222222222222222222222333355555555666666666667777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 617 DKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNK 665 (1760)
Q Consensus 617 eKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ 665 (1760)
--++....+.++-.....-....+.|...++.+..-.-+|+-+-..++.
T Consensus 272 K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~ 320 (391)
T KOG1850|consen 272 KWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNK 320 (391)
T ss_pred HHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 6666666666655555444555555555555554444444444333333
No 265
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.74 E-value=1.6e+02 Score=40.29 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLD 430 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~ 430 (1760)
.|...+...+..+.+++.+++.++...+..+...+.+..
T Consensus 260 ~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 260 RQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777788888888888888888888888888887766653
No 266
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.54 E-value=99 Score=32.04 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 467 INEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIA 537 (1760)
Q Consensus 467 L~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~l 537 (1760)
|-.++..|.+...-|++++.+-+.....+.+++..-...|.+...|++.+.=+-.+|..+...|..|+...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777888888888888889999999999999999999999999999999899999999888888743
No 267
>KOG4687|consensus
Probab=56.62 E-value=4.2e+02 Score=31.77 Aligned_cols=95 Identities=13% Similarity=0.275 Sum_probs=53.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLA-------QVGR----EKEALVKNIEMLRVEKSAL 460 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~-------~a~~----E~~~l~~~le~L~~Ek~~L 460 (1760)
+|+.+--+.+.+|..-|...+.+...|.-.+.-|.-.|..+...++ ++.- +...+-..++....+.-.|
T Consensus 23 qK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkL 102 (389)
T KOG4687|consen 23 QKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKL 102 (389)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhh
Confidence 6677777777777777777777777776666655555555544431 1122 2244444555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhH
Q psy11582 461 EKNKREINEMVESLNSNLDKVQKNNS 486 (1760)
Q Consensus 461 e~~r~eL~~eve~Le~e~ekLk~~~~ 486 (1760)
-..++.|..+...|.-+.+-++....
T Consensus 103 rTd~eaL~dq~adLhgD~elfReTeA 128 (389)
T KOG4687|consen 103 RTDREALLDQKADLHGDCELFRETEA 128 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 55555555555555555555544433
No 268
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.25 E-value=92 Score=36.04 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=28.0
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 477 NLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIA 537 (1760)
Q Consensus 477 e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~l 537 (1760)
.++.+...+.+|-+.+..++.++++.+..+.+.+.+..++...++-+..+.+.|+.....+
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 3333444444444444444444444444444444444444444444444444444444333
No 269
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.05 E-value=89 Score=35.66 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=61.1
Q ss_pred hhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhhhhhhhHHHH
Q psy11582 1438 LLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLK 1517 (1760)
Q Consensus 1438 ~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~~~~~~~~l~ 1517 (1760)
.|++-|.-+..|.-....+.|.|+.++.+...|+.+++.-..-=++....=...|.+...|...-..+...+..++.++.
T Consensus 99 ~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 99 RLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566677788888888888888888777766666666667777777777666666666777777777
Q ss_pred HHHHHhhhc
Q psy11582 1518 QLQKLLHSA 1526 (1760)
Q Consensus 1518 ~lqk~l~~~ 1526 (1760)
.||+...+.
T Consensus 179 ~Lq~q~~~~ 187 (192)
T PF11180_consen 179 QLQRQANEP 187 (192)
T ss_pred HHHHHhcCC
Confidence 776665443
No 270
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.73 E-value=1.6e+02 Score=28.71 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 867 ILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENV 920 (1760)
Q Consensus 867 ~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~ 920 (1760)
.|+.+|..+-+.+..+..+++.++.....+.+....+..+...+..+......+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333333333333333333333333
No 271
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=54.19 E-value=5.6e+02 Score=32.51 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH
Q psy11582 845 EQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQ 904 (1760)
Q Consensus 845 eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr 904 (1760)
.-|...-..+.++...++..+...+..+..|......+..+|......|.+-++++-.++
T Consensus 320 ~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R 379 (384)
T PF03148_consen 320 YGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQLR 379 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 334445567778888888888888888888999999999999988888888777777665
No 272
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.04 E-value=1.9e+02 Score=27.93 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 591 SKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQ 659 (1760)
Q Consensus 591 ~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~e 659 (1760)
+|+.+.+.....-|..|+=++..|.....+|...-.+++...+.++.+-++|..+......++-++-|.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444555555555555555555555555555555555555555555555555555544444444443
No 273
>KOG1937|consensus
Probab=53.51 E-value=6.1e+02 Score=32.69 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 401 LHTMKKQYESADESQYNMSQQV-------TSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVES 473 (1760)
Q Consensus 401 L~rLrdqL~EvE~e~r~Le~Qa-------qkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~ 473 (1760)
+..+++++.+. .++.+..+|. +.-..........++-+..-..++-..+..-+.-.+.|...+..++..+..
T Consensus 233 ~eel~eq~een-eel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ 311 (521)
T KOG1937|consen 233 VEELTEQNEEN-EELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEE 311 (521)
T ss_pred HHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHH
Confidence 66677777666 2333333221 112222233333333344444444444444566677778888888888888
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 474 LNSNLDKVQKNNSRLSKINESLQSE----KLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKE 549 (1760)
Q Consensus 474 Le~e~ekLk~~~~eLqrq~d~leeE----k~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere 549 (1760)
|...|+.-+..+...-.++....+- -.+ ...|...+.++.-...+++.=++-...|+++|..+-... .+-
T Consensus 312 ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv-----~rk 385 (521)
T KOG1937|consen 312 LTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDV-----QRK 385 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchh-----HHH
Confidence 8888888888777654443332221 112 344444555555555555555555555555555543322 244
Q ss_pred HHHHhHHHHHHHHHHHHHhH
Q psy11582 550 LLEQNKEEMQTLLAHIEKSK 569 (1760)
Q Consensus 550 ~Leqek~el~~aL~~aE~sl 569 (1760)
++.+-..++.+-+-+.+..+
T Consensus 386 ~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 55555555555544444333
No 274
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.42 E-value=27 Score=43.85 Aligned_cols=21 Identities=10% Similarity=0.117 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy11582 521 RGKEDMNRRLREDLLIANEDL 541 (1760)
Q Consensus 521 ~~LEek~S~Lr~EL~~lrE~L 541 (1760)
..+|++.+.+...+..+...+
T Consensus 147 ~e~Eeris~lEd~~~~i~~~~ 167 (370)
T PF02994_consen 147 DELEERISELEDRIEEIEQAI 167 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhhHH
Confidence 333333333333333333333
No 275
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=53.07 E-value=4e+02 Score=30.42 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11582 515 AREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNK 555 (1760)
Q Consensus 515 ~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek 555 (1760)
-....|...+.+|+.|-+.|.-.|.-+..+..++..+-...
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q 101 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQ 101 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34666788888888888888888888888887777764443
No 276
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.43 E-value=4.9e+02 Score=31.35 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=50.2
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhh-HHHHHHHHHhHHHHHHHHHH
Q psy11582 513 MDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGD-VEAEMERLLLDRSDMNEQIS 591 (1760)
Q Consensus 513 ~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slae-LE~elekLrsE~a~lrdsL~ 591 (1760)
++.+..+..+|-..+..|..++...... ....-..+-++-.-..++.+-++.+... ++.+-..|.+=.......+.
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~s---t~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~ 84 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDS---TALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS 84 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhh---HHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444566666666666666666554432 2222333334444445555555543332 22222222222223333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy11582 592 KYEITIEANDKELQRLQEQLASLRSDKE 619 (1760)
Q Consensus 592 Km~v~l~alEre~~~L~eqla~LrseKe 619 (1760)
.|..++..+...+....+++..|++-+|
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD 112 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYKD 112 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555556666666666666555
No 277
>KOG4514|consensus
Probab=52.37 E-value=4e+02 Score=30.26 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy11582 1250 PSRRYSPVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKD 1308 (1760)
Q Consensus 1250 p~r~~sp~~~~~~~~~~~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e 1308 (1760)
|++++ |+.+|.++|..+.|||+++ .|+|++=-++-..|.+|=+-|.-
T Consensus 104 ~a~pl-ps~~p~~s~~ip~vDp~VL-----------~DlE~~~~el~~~vD~llr~lgg 150 (222)
T KOG4514|consen 104 HATPL-PSMGPIQSRNIPEVDPSVL-----------SDLELEAQELASSVDNLLRNLGG 150 (222)
T ss_pred ccCCC-CCCCCCCCCCCCCCChHHH-----------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33443 4566777788899999986 56777777777777776665443
No 278
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=51.61 E-value=6.1e+02 Score=32.15 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHH
Q psy11582 1281 LMQQVAQIERERDDLKAMTQALKREIKDL---SDAHTQESNKMAQAQQTMRAL 1330 (1760)
Q Consensus 1281 l~q~l~~~eRERdd~r~q~~~l~~ql~e~---~~~~~~~~~~~~qlq~~l~~~ 1330 (1760)
+++++.-++||=.+++..|...+..-.+. ...-......+..|++.|..+
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 55666666666666666666554322222 111122234555555555555
No 279
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=51.20 E-value=8.3e+02 Score=33.59 Aligned_cols=254 Identities=16% Similarity=0.192 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHHhhhhHHHHH--H--HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy11582 270 AEKDKLVKENSELKSQVTVLK--S--ENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQELELLQNTL 345 (1760)
Q Consensus 270 ~qL~ekv~e~~eLq~rl~el~--~--~~e~l~~q~~eke~~i~~L~~~l~~LEs~~~~~~~~~~~~~~~~~~~~~lq~~l 345 (1760)
.+..+.+.|--+++..+.... - .-...-.+..+|-++|+-|.-.|..|-...+. ++..+.--+++.+-..|
T Consensus 298 E~i~e~tSE~kdlni~~~d~~~~kd~qk~~n~~kta~KVrt~KYLLgELkaLVaeq~D-----sE~qRLitEvE~cislL 372 (861)
T PF15254_consen 298 EQIEEATSEGKDLNIQVRDAKTVKDVQKAKNPNKTAEKVRTLKYLLGELKALVAEQED-----SEVQRLITEVEACISLL 372 (861)
T ss_pred HHhhhccchhhhcccccCchhhhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHhccch-----HHHHHHHHHHHHHHHhh
Confidence 555555555555553333322 1 12233347889999999999999988887766 55566655655443333
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 346 RDIARAVIQDAEGKDIPSRPAPLKRHATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVTSL 425 (1760)
Q Consensus 346 ~dia~~~~~d~~~~~~~~~~~~~~~~~sp~~~~~~~r~~s~a~~~~~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkL 425 (1760)
-.+ ...++.. +.+|+ ++.-||--.....+.+|.|.+|+.+-
T Consensus 373 Pav----~g~tniq------------------------~EIAL-----------A~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 373 PAV----SGSTNIQ------------------------VEIAL-----------AMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred hhh----hccccch------------------------hhhHh-----------hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 221 1111110 11111 02223333333445666666665430
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11582 426 TSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNE 505 (1760)
Q Consensus 426 k~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~e 505 (1760)
+.-....+. .+...|+-. |+.---.|+.++.......+-|+..|.+|-+-++...+|..-+...
T Consensus 414 -e~~~k~~~~-~~~n~El~s--------------LqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 414 -EKAEKTSGS-QDCNLELFS--------------LQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKM 477 (861)
T ss_pred -HhhcccCCC-cccchhhHH--------------HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 000000100 112223333 2222233444444444445555555556656666555555554444
Q ss_pred HHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHH
Q psy11582 506 LDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSD 585 (1760)
Q Consensus 506 l~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~ 585 (1760)
+... |.+. -+.-...+....+++-|+..+--..+...+-.+.-+.|..-+.-.|..- ..++++|+.=.-.
T Consensus 478 ~~ek--d~~l-~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQr-------DaEi~RL~eLtR~ 547 (861)
T PF15254_consen 478 FQEK--DQEL-LENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQR-------DAEIERLRELTRT 547 (861)
T ss_pred HHHH--HHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHH-------HHHHHHHHHHHHH
Confidence 4221 1111 2223455666677777776666666666666655555555544444332 2355566666666
Q ss_pred HHHHHHHH
Q psy11582 586 MNEQISKY 593 (1760)
Q Consensus 586 lrdsL~Km 593 (1760)
|+.+++++
T Consensus 548 LQ~Sma~l 555 (861)
T PF15254_consen 548 LQNSMAKL 555 (861)
T ss_pred HHHHHHHH
Confidence 77777666
No 280
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.72 E-value=7.1e+02 Score=32.64 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=11.0
Q ss_pred hhHHhHHHHHHHHHhhHHHHHHHhh
Q psy11582 1130 ERVRASSAHLLQLEASKKDVEHKLS 1154 (1760)
Q Consensus 1130 ~r~~~le~eL~~~e~~rr~~e~~L~ 1154 (1760)
+.+..+-..|..+...-+.+..+|.
T Consensus 387 ~~~~klG~~L~~a~~~y~~A~~~L~ 411 (475)
T PRK10361 387 DDMSAIGQSLDKAQDNYRQAMKKLS 411 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 281
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=49.71 E-value=4.2e+02 Score=29.72 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH
Q psy11582 438 QVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESL 495 (1760)
Q Consensus 438 ~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~l 495 (1760)
+...=.+.++..++.+..+...+...+...-.+++.|+...-..+.-+.+..+..+.+
T Consensus 17 qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y 74 (159)
T PF05384_consen 17 QIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3334444445555556666666666666666677777777766666666666665433
No 282
>PLN02939 transferase, transferring glycosyl groups
Probab=49.34 E-value=1e+03 Score=34.01 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=63.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHh--------HHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKL---AKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLL--------DRSD 585 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~L---ere~Leqek~el~~aL~~aE~slaeLE~elekLrs--------E~a~ 585 (1760)
-..+..|.+.+-.|+..+..++.+|..+.. ..-.|+.++..++..+..+|+........+-++.. .+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVEN 304 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHH
Confidence 455666666777777777777777655433 33456777777788888777777666555555433 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11582 586 MNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQ 629 (1760)
Q Consensus 586 lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Q 629 (1760)
+++-|+++..+.+ +.-..-.+-.+|+...|.|+.+|.++.
T Consensus 305 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (977)
T PLN02939 305 LQDLLDRATNQVE----KAALVLDQNQDLRDKVDKLEASLKEAN 344 (977)
T ss_pred HHHHHHHHHHHHH----HHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 4444444422211 111122344567777788888887764
No 283
>KOG0288|consensus
Probab=49.24 E-value=5.8e+02 Score=32.52 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy11582 465 REINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANED 540 (1760)
Q Consensus 465 ~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~ 540 (1760)
..+..+...+..+++.+++.+.+.+..+..++++...+..+.=+....-+++......++...-+...|+-.++++
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q 105 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444444444444444433333333333333334444444444444444444444433
No 284
>PF15556 Zwint: ZW10 interactor
Probab=49.10 E-value=3.6e+02 Score=31.10 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q psy11582 1295 LKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLEL 1374 (1760)
Q Consensus 1295 ~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~~~ki~~le~ 1374 (1760)
|...|..++.-|..+-.....+..++.+|+.++-.++--|.-++.++.-|+-...+|-|..=+.=.|..+
T Consensus 75 YqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sA---------- 144 (252)
T PF15556_consen 75 YQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSA---------- 144 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred hhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhh
Q psy11582 1375 TLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRT 1414 (1760)
Q Consensus 1375 ~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~ 1414 (1760)
...++....+..+..+..+...|+-.-.++
T Consensus 145 ----------Evrerq~~~qqeLe~l~qeL~~lkqQa~qe 174 (252)
T PF15556_consen 145 ----------EVRERQTGTQQELERLYQELGTLKQQAGQE 174 (252)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=49.04 E-value=6.7e+02 Score=31.86 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Q psy11582 605 QRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVV-------------RLNKELEDTE 671 (1760)
Q Consensus 605 ~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~-------------rL~~ele~~~ 671 (1760)
..+..-+......|..|+..|..+...+...+..+..|+..+..........+..++ ..+.-|-.+.
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev 326 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEV 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHH
Confidence 345577778888888999999999999998888888888888888887776666555 1333444456
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q psy11582 672 KRAQETKASLVQQASGLDADYQNQISNLKKQNEEC 706 (1760)
Q Consensus 672 ~~~~~~~~~l~~ql~q~E~e~q~~L~~~~~ah~E~ 706 (1760)
..+...+..|..+|..++..++. |.+....-+++
T Consensus 327 ~~l~~~i~~L~~~L~~a~~~l~~-L~~~~~~Le~d 360 (384)
T PF03148_consen 327 KELRESIEALQEKLDEAEASLQK-LERTRLRLEED 360 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 77777777888888877777555 33333333333
No 286
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.02 E-value=4.7e+02 Score=30.10 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 434 AQLAQVGREKEALVKNIEMLRVEKS 458 (1760)
Q Consensus 434 ~~l~~a~~E~~~l~~~le~L~~Ek~ 458 (1760)
..++..+..|..++.++..|=+-+.
T Consensus 79 ~~LE~~GFnV~~l~~RL~kLL~lk~ 103 (190)
T PF05266_consen 79 SELEEHGFNVKFLRSRLNKLLSLKD 103 (190)
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHH
Confidence 3344466677777766666544433
No 287
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=48.98 E-value=3.7e+02 Score=28.90 Aligned_cols=40 Identities=30% Similarity=0.322 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy11582 588 EQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFD 627 (1760)
Q Consensus 588 dsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe 627 (1760)
+++.-+...+..+...+..+.+++..++...+.+...+..
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444433
No 288
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.87 E-value=2.5e+02 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Q psy11582 459 ALEKNKREINEMVESLNSNLDKVQKNNSRLS 489 (1760)
Q Consensus 459 ~Le~~r~eL~~eve~Le~e~ekLk~~~~eLq 489 (1760)
.|+..+..+-..|..|+.+++.|+..|..+.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444455555555555555555555555444
No 289
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.77 E-value=5.7e+02 Score=31.14 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHH
Q psy11582 725 VTKLTEEKEQVRAALEKKLHATVKQITEEKDCE-LSRLQANLCQLQSHIDKIC 776 (1760)
Q Consensus 725 ~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~el-~~~~~~e~~~L~~ei~~l~ 776 (1760)
+..|....+..+..+..+.+..+..-.++-..+ ...+..+...++.+|..|+
T Consensus 245 ~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 245 IKQLKEKMEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444443333333344444444444333333222 3335666677777776664
No 290
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.36 E-value=67 Score=39.86 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHH
Q psy11582 453 LRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLRE 532 (1760)
Q Consensus 453 L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~ 532 (1760)
+......++..+...+..+...+..+..+...+..++.+++....++..++.++......+++...=+.+|.+...++..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 45555666666667777777777777777777888888888888888888888888888888888889999999999988
Q ss_pred HHHHHHHHHHHH
Q psy11582 533 DLLIANEDLKNA 544 (1760)
Q Consensus 533 EL~~lrE~L~~~ 544 (1760)
.+..+.+.+..+
T Consensus 299 ~~~~l~~~~~~l 310 (344)
T PF12777_consen 299 QIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 888888877665
No 291
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=47.37 E-value=78 Score=32.44 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHhhhhHHhHHHHHHhhhHHhhhhcC-CCCCCCCC------CCChHHHHHH
Q psy11582 1585 KMAQAQQTMRALQEEKYALETKLSQTKA-AANSQNELEVKEVARAGLESQLRMSQ-WPSESPMN------GGDSEEITKL 1656 (1760)
Q Consensus 1585 ~e~~~~~~~~~lq~e~~~l~~rl~~~~~-~~~~~~~l~~~ev~rs~le~~lr~~~-~~~~~~~~------~~~~~~~~~~ 1656 (1760)
..+++++++|=..+|-.-|+..|+-++. ++.|..+|+. +.+..--.+ |...++.+ .....+|+..
T Consensus 2 ~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k-------yk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a 74 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK-------YKSKYGDLDSLAKLSEGGSPSGREAELQEELKLA 74 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCCCcccccCCCCCCCccccHHHHHHHHHH
Confidence 3578889999999999999999999986 5556665444 332221111 22212111 1122446677
Q ss_pred HHHhHHHHHHHHhHH
Q psy11582 1657 CRERSELRNKLENLH 1671 (1760)
Q Consensus 1657 q~e~~~~r~~~~~l~ 1671 (1760)
..+-++|.+||..|+
T Consensus 75 ~~qi~~Ls~kv~eLq 89 (96)
T PF11365_consen 75 REQINELSGKVMELQ 89 (96)
T ss_pred HHHHHHHhhHHHHHh
Confidence 777788888887775
No 292
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=46.77 E-value=3.1e+02 Score=27.31 Aligned_cols=68 Identities=15% Similarity=0.313 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy11582 444 EALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMD 514 (1760)
Q Consensus 444 ~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e 514 (1760)
+.++..++.+..+.........++...+..--.+++-++..+.+|+..-..+...+++ +|.++..+++
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe---EI~rLr~eLe 74 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE---EIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3344444445555555555555666666666667777777777777777777766643 4444444443
No 293
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.60 E-value=6.1e+02 Score=30.75 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=46.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 480 KVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAK 548 (1760)
Q Consensus 480 kLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Ler 548 (1760)
.+...+..++..++.+..+-..+...|.+...|+++.+++|..|..-.=..-.|...+.+.|+.++..+
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666666777777777777777777777777777777777777777777666554
No 294
>KOG1962|consensus
Probab=46.38 E-value=1.9e+02 Score=33.74 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHH
Q psy11582 464 KREINEMVESLNSNLDKVQKNNSRLS 489 (1760)
Q Consensus 464 r~eL~~eve~Le~e~ekLk~~~~eLq 489 (1760)
+..+..+++.+..+|++|-..++.|+
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 295
>KOG0239|consensus
Probab=45.97 E-value=9.6e+02 Score=32.85 Aligned_cols=25 Identities=0% Similarity=0.045 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 398 REQLHTMKKQYESADESQYNMSQQV 422 (1760)
Q Consensus 398 qe~L~rLrdqL~EvE~e~r~Le~Qa 422 (1760)
..-..++++.+.++......+...+
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~l 123 (670)
T KOG0239|consen 99 EAYNERLRDLLSELQSNLSELNMAL 123 (670)
T ss_pred HHHHHHHhhhccccccchhhhhhhh
Confidence 3444455555555555544444433
No 296
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=45.93 E-value=4.6e+02 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy11582 1258 RGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDA 1312 (1760)
Q Consensus 1258 ~~~~~~~~~~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~ 1312 (1760)
+++.+.|..|.|||.++ .++|++=..+-.+|..|-..|.-.-..
T Consensus 38 ~~~~~~~~~P~id~~~L-----------~~LE~~a~~ia~svd~ll~~L~~~L~~ 81 (149)
T PF10157_consen 38 PRQLPSPSIPPIDPAVL-----------HDLERDAQAIAESVDSLLRSLRSSLHS 81 (149)
T ss_pred cccccCCCCCcccHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566888865 667777777777777777766654433
No 297
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.83 E-value=3.3e+02 Score=32.64 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKE 444 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~ 444 (1760)
.=|.-.-.+-.|.+....|.|++++.+...+..|+.+++.+...-..+...++
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778889999999999999999999999999999888887544444333
No 298
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.79 E-value=4.1e+02 Score=33.06 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 413 ESQYNMSQQVTSLTSQLDQTKAQL 436 (1760)
Q Consensus 413 ~e~r~Le~QaqkLk~El~~l~~~l 436 (1760)
..+.-++.|+.+++.++......+
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l 193 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAEL 193 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 299
>PRK10869 recombination and repair protein; Provisional
Probab=44.77 E-value=9.1e+02 Score=32.22 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 439 VGREKEALVKNIEMLRVEKSALEKNKREINEMVESL 474 (1760)
Q Consensus 439 a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~L 474 (1760)
+..+|..+...++.+..........+.-++-+++.+
T Consensus 162 ~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433444444444333333
No 300
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=44.24 E-value=1e+03 Score=32.74 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=20.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11582 478 LDKVQKNNSRLSKINESLQSEKLFLQN 504 (1760)
Q Consensus 478 ~ekLk~~~~eLqrq~d~leeEk~el~~ 504 (1760)
++-||.+|..|.+++..+..++.+.+.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~ 415 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEK 415 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 577888888888888888887777543
No 301
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=44.19 E-value=5.8e+02 Score=29.75 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11582 456 EKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRIN 510 (1760)
Q Consensus 456 Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~ 510 (1760)
++...+.....+..+++.+...+.+++..+.+|+..+..+...+..+......+.
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666666666666666666655555554444333
No 302
>KOG3850|consensus
Probab=43.30 E-value=7.9e+02 Score=31.08 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhhhccccccCCCCCCc-hhhhhHHhhhHHHHHHHHhhhhhhhhhhhccccCCCCCCCCCCCCCCC----CCCCCCCCC
Q psy11582 1186 AQYDAYKSMDCHTDRSSD-LERYRAAQLHAESLLEAREKSHRQQVNRLENQLDGRASHAGGKMTSPS----RRYSPVRGG 1260 (1760)
Q Consensus 1186 ~~~d~~~~~~~~~~~~~~-~~~~~~~~~~a~~~le~~~~~~~~~~~r~~~~~~~~~~~~~~~~~sp~----r~~sp~~~~ 1260 (1760)
+..++-|...+|+.+.|- -++..|+ .-..++++++. ++|. ++-|...++
T Consensus 190 ~~d~~v~l~~~~~~~~~e~~~~~l~~-------------------------~~tl~~~~~~g-s~~E~~S~~~gSa~~~~ 243 (455)
T KOG3850|consen 190 SADNIVHLKAVLENFGPERNARALPG-------------------------SATLVSPPKYG-SDDECSSSRPGSAADET 243 (455)
T ss_pred cCCCcccccccccccchhhhhccCCC-------------------------cccccCCCCCC-CCcccccCCCCcccccc
Q ss_pred CCCCCCCCCC--------hHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy11582 1261 EGGEGLIDVD--------PEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQE 1332 (1760)
Q Consensus 1261 ~~~~~~~d~D--------p~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee 1332 (1760)
...||+..-. ..+|-..|+...+....+++--+.++.+.. .-+.=-..-++|
T Consensus 244 n~~~g~~~~n~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~k--------------------rdy~fi~etLQE 303 (455)
T KOG3850|consen 244 NNVPGHGGANPYHSQGAALDAILEELREIKETQALLEESYERLKEQIK--------------------RDYKFIAETLQE 303 (455)
T ss_pred CCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHHHHHH--HHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHH
Q psy11582 1333 EKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKV--LTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDE 1410 (1760)
Q Consensus 1333 ~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~~~ki--~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~ 1410 (1760)
+|..-+--=-+.-.+..+|-..+--..-|.-.|.+|| -..|+ -|..+|.
T Consensus 304 ERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyER-----------------------------aRdIqEa 354 (455)
T KOG3850|consen 304 ERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYER-----------------------------ARDIQEA 354 (455)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHH
Q ss_pred hhhhhhhhhhhhhh
Q psy11582 1411 LSRTEARVTKLELQ 1424 (1760)
Q Consensus 1411 l~~~E~r~~~lel~ 1424 (1760)
++.--+|.++||+.
T Consensus 355 lEscqtrisKlEl~ 368 (455)
T KOG3850|consen 355 LESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHH
No 303
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=42.37 E-value=3.6e+02 Score=26.86 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 403 TMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKS 458 (1760)
Q Consensus 403 rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~ 458 (1760)
||.+.|+.+..+..++-..+..++..-+.+...+.....+...++.++-.|.....
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~ 56 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444444444444444444444444444444333
No 304
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.26 E-value=4e+02 Score=32.80 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11582 555 KEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQ 629 (1760)
Q Consensus 555 k~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Q 629 (1760)
+.++...+.++--+++-|-.+-+.+.-+++.|+|.|.-|...+..+.|++..-..++..+.-..+.|...+..++
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555555555554333333333333333333333333
No 305
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.57 E-value=3.9e+02 Score=27.44 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFD 627 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe 627 (1760)
...++.++..+..+.+++..+..+...+...|++
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 306
>PF14992 TMCO5: TMCO5 family
Probab=41.45 E-value=7.4e+02 Score=30.24 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRS---DKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVV 661 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~Lrs---eKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~ 661 (1760)
...|.+.+..++.|..+++...- ..|.......+-+..+-.++.+...||.++..+...+..++.++.
T Consensus 24 L~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~ 94 (280)
T PF14992_consen 24 LQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQD 94 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhc
Confidence 44555555555555555544432 335555555666677777777777777777777666666666654
No 307
>PRK00846 hypothetical protein; Provisional
Probab=41.42 E-value=89 Score=30.84 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhh
Q psy11582 1452 RCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTS 1506 (1760)
Q Consensus 1452 r~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~ 1506 (1760)
|-..+..+|.++|.|.+=...+++.|+..+++-...=..|+.++..+..-|.+..
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456778889999999999999999999999887777777777777776666543
No 308
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.21 E-value=4.4e+02 Score=30.16 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 526 MNRRLREDLLIANEDLKNAKLAKELLE 552 (1760)
Q Consensus 526 k~S~Lr~EL~~lrE~L~~~~Lere~Le 552 (1760)
....++.++..++++.+.-+..+..|.
T Consensus 136 ~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444555555555555555555555553
No 309
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.99 E-value=3.2e+02 Score=27.20 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 587 NEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQL 642 (1760)
Q Consensus 587 rdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqL 642 (1760)
=|.+.-++.+++.+..+...+.+++..+++.++.|......+++.......++..|
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666666666666666666666666666666655555555555444443
No 310
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=40.94 E-value=1e+03 Score=31.59 Aligned_cols=134 Identities=15% Similarity=0.176 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy11582 533 DLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDK---ELQRLQE 609 (1760)
Q Consensus 533 EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEr---e~~~L~e 609 (1760)
||..+.+.+..+...++.+=.-.+..-.|-..++.....|-..+.+++..-..+.+..+-...-.--.+. -.+.+++
T Consensus 275 eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~ 354 (570)
T COG4477 275 ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEK 354 (570)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 4555566666666666666555555666666677777777777777777777776665544111110000 0112223
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 610 QLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKE 666 (1760)
Q Consensus 610 qla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~e 666 (1760)
+|..+.+..+..-..+..-..--+.+....+.+++.+-.+...++.++..+..|+++
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrkd 411 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKD 411 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333333333333222222222333444444455555555555555555555555544
No 311
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.85 E-value=3e+02 Score=26.84 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=26.3
Q ss_pred HhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11582 567 KSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAI 624 (1760)
Q Consensus 567 ~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~ 624 (1760)
..++.|-.+-++|-.........+.++...+..++..+..+...++....+.+.|+..
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444433
No 312
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=40.75 E-value=1.1e+02 Score=30.70 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCChHhHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy11582 1268 DVDPEIVR-KGVRNLMQQVAQIERERDDLKAMTQALK 1303 (1760)
Q Consensus 1268 d~Dp~~vr-~~lr~l~q~l~~~eRERdd~r~q~~~l~ 1303 (1760)
+++..-++ +-+-+|.-+|..+.+|||++|.-|.-+.
T Consensus 10 ~ls~~e~~~k~lE~L~~eL~~it~ERnELr~~L~~~~ 46 (84)
T PF04822_consen 10 NLSKKEKKMKELERLKFELQKITKERNELRDILALYT 46 (84)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56668888 8999999999999999999999888543
No 313
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=40.40 E-value=4.7e+02 Score=33.30 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=40.8
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 1267 IDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETK 1340 (1760)
Q Consensus 1267 ~d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~ 1340 (1760)
+-|||..|-.....+-++=.+..|-= ......+.++-.++...+..-+.++.+|++.=...++.++..+..
T Consensus 53 VmvD~~~v~~q~~~~q~q~~~~~~~e---~~r~~~~~~~aeel~~~~~~eq~rlk~le~er~~~~~~~k~ae~~ 123 (387)
T PRK09510 53 VMVDPGAVVEQYNRQQQQQKSAKRAE---EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123 (387)
T ss_pred eecChHHHHHHHHHHHHhHHhHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888666654444433333221 112445556666666677777777777766655566555555443
No 314
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.21 E-value=2.1e+02 Score=27.45 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHH
Q psy11582 464 KREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKED 525 (1760)
Q Consensus 464 r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEe 525 (1760)
+..|...|+.|=.-++.|+.+|..|..+...+..+...+......+...++..=.+|..+|.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 35677788888888889999999999999999999988888888888888877777777663
No 315
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.61 E-value=3.2e+02 Score=27.64 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHh
Q psy11582 1112 EEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAA 1165 (1760)
Q Consensus 1112 ~~L~v~L~~l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s~Lrr~lg 1165 (1760)
..++..++.|..--+...+++-+.++...+.+..-+++..+|.+..-++|-+|+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555566666666777788889999999988887777665
No 316
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=39.60 E-value=9.6e+02 Score=31.03 Aligned_cols=117 Identities=23% Similarity=0.254 Sum_probs=54.6
Q ss_pred HHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy11582 565 IEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVK-KEQLE 643 (1760)
Q Consensus 565 aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~e-keqLE 643 (1760)
++.....|...-+.+-+.+++|+|.++.|... -+.|...-.-.++..+..++..+...|..++.-+....-- +..+|
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkD--V~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE 281 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKD--VVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWE 281 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 34444444445555555555555555544221 1122222222333333333333333333333222222222 45567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 644 HEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQ 684 (1760)
Q Consensus 644 ~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~q 684 (1760)
.|++.+....+-|+-+ +.|-.++..-..++......+.+-
T Consensus 282 ~EL~~V~eEQqfL~~Q-edL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 282 SELQKVCEEQQFLKLQ-EDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777666 456666666666666655554443
No 317
>PF14992 TMCO5: TMCO5 family
Probab=38.57 E-value=8.2e+02 Score=29.90 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 842 TLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSER 879 (1760)
Q Consensus 842 ~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~ 879 (1760)
+|.-++-..-.++.++...+=..++.-+..+..|..++
T Consensus 4 sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Ei 41 (280)
T PF14992_consen 4 SLNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREI 41 (280)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666555555544443
No 318
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=38.53 E-value=4.5e+02 Score=26.84 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 598 EANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEH 644 (1760)
Q Consensus 598 ~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~ 644 (1760)
.....+...+++.+..+..+|..-...+|.+......+..+.-.|..
T Consensus 20 ~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 20 DKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333344444444444444555555555555555554444443333
No 319
>PRK11519 tyrosine kinase; Provisional
Probab=38.39 E-value=9.5e+02 Score=33.07 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 520 LRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 520 L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
+.+|+++...++.+|..+..+|+...
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 320
>KOG2077|consensus
Probab=38.13 E-value=8.2e+02 Score=32.36 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q psy11582 439 VGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSR 487 (1760)
Q Consensus 439 a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~e 487 (1760)
.++++..|-..-..|-.-|++|......|-.+|+.|.-+.+-|+-++.-
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea 347 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEA 347 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHH
Confidence 3444444444444444445555555555555555544444444444333
No 321
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.12 E-value=3e+02 Score=31.47 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy11582 762 QANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLD 823 (1760)
Q Consensus 762 ~~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~ele 823 (1760)
..++..++..|......+.++ .||..+++++..+..++.....+++
T Consensus 82 ~~~i~~l~~~i~~~~~~r~~~----------------~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 82 EKKIEELEEKIEEAKKGREES----------------EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHhccccc----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444442 6788889999888887776666666
No 322
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.62 E-value=2.9e+02 Score=30.73 Aligned_cols=64 Identities=36% Similarity=0.439 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 595 ITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHL--EQSDVKKEQLEHEVQELLVKQESLKG 658 (1760)
Q Consensus 595 v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l--~qle~ekeqLE~E~q~l~~~~E~Lq~ 658 (1760)
.++..+..++..+.+++..+..+.-.|.+.|..+.... ..+...+.+|+.++..+..+++.+++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555444332 33444455555555555555555443
No 323
>KOG2129|consensus
Probab=37.09 E-value=1e+03 Score=30.48 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=34.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 749 QITEEKDCELSRLQANLCQLQSHIDK----ICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKEL 815 (1760)
Q Consensus 749 ~l~~ek~el~~~~~~e~~~L~~ei~~----l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL 815 (1760)
-++++.+.++.|+-..++.|+.+... |.|=|-+ ..+.||. .|.|.-+|.++|+--...|
T Consensus 151 ~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre-~V~lent-------lEQEqEalvN~LwKrmdkL 213 (552)
T KOG2129|consen 151 LLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRRE-AVQLENT-------LEQEQEALVNSLWKRMDKL 213 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHH-HHHHhhH-------HHHHHHHHHHHHHHHHHHH
Confidence 35666667777777766666654322 2222222 3556666 6777888888776544433
No 324
>PRK04325 hypothetical protein; Provisional
Probab=36.92 E-value=90 Score=30.43 Aligned_cols=52 Identities=25% Similarity=0.276 Sum_probs=38.4
Q ss_pred HHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhh
Q psy11582 1454 EHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDT 1505 (1760)
Q Consensus 1454 ~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~ 1505 (1760)
+.+..+|.++|.|.+=...+|+.|+..+++-...=..|+.++.-|..-+.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455568899999999999999999998877666566666666665555443
No 325
>PRK10698 phage shock protein PspA; Provisional
Probab=36.63 E-value=7.6e+02 Score=28.99 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11582 457 KSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINS 511 (1760)
Q Consensus 457 k~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~ 511 (1760)
+.........+..+++.....+++|+..+..|+..+..+...+..+......+..
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555555555666665555555555544443
No 326
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.24 E-value=1.2e+03 Score=31.01 Aligned_cols=338 Identities=18% Similarity=0.204 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 535 LIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASL 614 (1760)
Q Consensus 535 ~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~L 614 (1760)
...+=.++.+.-.++.+++......+.++.+-..+++|....++=..+....++-..+|...+-+..-..- +=
T Consensus 93 ~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~G---e~---- 165 (570)
T COG4477 93 LADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYG---EA---- 165 (570)
T ss_pred hhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhh---hh----
Confidence 34445566666677777777777677777777777777777777777777777777666555544333222 22
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11582 615 RSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQN 694 (1760)
Q Consensus 615 rseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~e~q~ 694 (1760)
...++..|..++..+++..+..+. |..-+...-+++....+..|..-+| ....-++..+.+...
T Consensus 166 ---~~~lEk~Le~i~~~l~qf~~lt~~--Gd~ieA~evl~~~ee~~~~L~~~~e-----------~IP~L~~e~~~~lP~ 229 (570)
T COG4477 166 ---APELEKKLENIEEELSQFVELTSS--GDYIEAREVLEEAEEHMIALRSIME-----------RIPSLLAELQTELPG 229 (570)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHhccC--CChhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhchH
Confidence 233333333333333333332110 1111111112222222222222211 111112222222222
Q ss_pred HHHHHHHHhhHHh---hhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11582 695 QISNLKKQNEECV---TKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSH 771 (1760)
Q Consensus 695 ~L~~~~~ah~E~~---~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L~~e 771 (1760)
.|.+.+.+-++=+ =.|.+..| ...+.+|. +++. +....+.+|+- -....++...+++
T Consensus 230 ql~~Lk~Gyr~m~~~gY~l~~~~i------d~~~~~L~---~~l~-----~~~~~l~~Lel------d~aeeel~~I~e~ 289 (570)
T COG4477 230 QLQDLKAGYRDMKEEGYHLEHVNI------DSRLERLK---EQLV-----ENSELLTQLEL------DEAEEELGLIQEK 289 (570)
T ss_pred HHHHHHHHHHHHHHccCCcccccH------HHHHHHHH---HHHH-----HHHhHHHHhhh------hhHHHHHHHHHHH
Confidence 2333333322110 00111111 11122222 2221 12222323322 1224566677777
Q ss_pred HHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHHHHHHHHHHHHHH
Q psy11582 772 IDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTV 851 (1760)
Q Consensus 772 i~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~i~~l~eEL~~~~ 851 (1760)
|..+..-.+. |-+ |--..+.=...|.+.|..+.......+.+++++++-. --.+-+...+.....+|..+.
T Consensus 290 ie~lYd~lE~-----Eve---A~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY-~l~e~e~~~vr~~e~eL~el~ 360 (570)
T COG4477 290 IESLYDLLER-----EVE---AKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESY-RLAETELGSVRKFEKELKELE 360 (570)
T ss_pred HHHHHHHHHH-----HHH---HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHHHHH
Confidence 7777765444 222 1111112234567777777788888888999999876 455666667777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 852 AKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDT 931 (1760)
Q Consensus 852 ~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~el 931 (1760)
..+.+....+... ..-+..++..++.+..++...+.........+..+...--++.+....+...+..+
T Consensus 361 ~~~~~i~~~~~~~-----------~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 361 SVLDEILENIEAQ-----------EVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHhhcc-----------cccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544433332 22223333334444444444444444444444444444444444444444444444
Q ss_pred HHHh
Q psy11582 932 KTHL 935 (1760)
Q Consensus 932 rr~L 935 (1760)
.+-+
T Consensus 430 kR~m 433 (570)
T COG4477 430 KRYM 433 (570)
T ss_pred HHHH
Confidence 4433
No 327
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.09 E-value=7.1e+02 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHH
Q psy11582 1051 VEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARL 1086 (1760)
Q Consensus 1051 l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~l 1086 (1760)
++.++..|++..+++..+-+ |.+...+.|+.++
T Consensus 146 LWr~v~~lRr~f~elr~~Te---rdL~~~r~e~~r~ 178 (182)
T PF15035_consen 146 LWREVVALRRQFAELRTATE---RDLSDMRAEFART 178 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHH
Confidence 77888888888887765543 3444466666554
No 328
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.02 E-value=9.5e+02 Score=29.91 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELL 551 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~L 551 (1760)
...+.+++.....++.++..+..+|.........+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~ 203 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVF 203 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455566666666666666665555555544433
No 329
>KOG0288|consensus
Probab=35.77 E-value=1.1e+03 Score=30.38 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy11582 435 QLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMD 514 (1760)
Q Consensus 435 ~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e 514 (1760)
.+.++.+++..+.+....+..++..+...-..+...+...+.++.+|+.+|..+--.+-...-.-+.+...+...+++.=
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~ 93 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRI 93 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666677777777776777777777777777777777776665555544444445555555555555
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 515 AREVELRGKEDMNRRLREDLLIANEDLKN 543 (1760)
Q Consensus 515 ~~q~~L~~LEek~S~Lr~EL~~lrE~L~~ 543 (1760)
+....|..+.++....-.--+.+++...+
T Consensus 94 r~~~eir~~~~q~~e~~n~~~~l~~~~~~ 122 (459)
T KOG0288|consen 94 RSLNEIRELREQKAEFENAELALREMRRK 122 (459)
T ss_pred HHHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 55555555555554444444444444433
No 330
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=35.69 E-value=6.4e+02 Score=27.82 Aligned_cols=112 Identities=14% Similarity=0.241 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhh
Q psy11582 1277 GVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMD 1356 (1760)
Q Consensus 1277 ~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~ 1356 (1760)
+|++||.+... ++...|..|+..|.+....-..+...+..+...++..+.....-+..-+.
T Consensus 22 ~i~~~L~k~~~------~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~------------- 82 (146)
T PF08702_consen 22 GIQDFLDKYER------DVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQ------------- 82 (146)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHcc------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHH-------------
Confidence 45666665432 45555666666666666666666666767776666655443322222222
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHH
Q psy11582 1357 QKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDE 1410 (1760)
Q Consensus 1357 ~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~ 1410 (1760)
-..+.+.|. |.-+|.-.-+....++.|+.-+...+....+|+.+.-.+.+.
T Consensus 83 -~s~~l~~~~--~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~ 133 (146)
T PF08702_consen 83 -YSKSLRKMI--IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERY 133 (146)
T ss_dssp -HHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHH--HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222322222 577788888888888899998888888888888888776653
No 331
>PF13166 AAA_13: AAA domain
Probab=35.48 E-value=1.3e+03 Score=31.36 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=7.2
Q ss_pred CCChHhHHHHHHHH
Q psy11582 1268 DVDPEIVRKGVRNL 1281 (1760)
Q Consensus 1268 d~Dp~~vr~~lr~l 1281 (1760)
++||+.+....+..
T Consensus 697 ~~~~~e~~~~~~~i 710 (712)
T PF13166_consen 697 PIDIEEYKKVFRKI 710 (712)
T ss_pred hhhHHHHHHHHHHH
Confidence 44555555555443
No 332
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.09 E-value=1.3e+02 Score=31.24 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=42.7
Q ss_pred HhHHhHHHHHHHhhhhhhhHHhhhhH--HHhHHHHHHHHHHhhchhhhhhHhHHHHh
Q psy11582 1445 NLHKLQERCEHQCRNITGLEERCTSL--KTTIDQLNLTLERASAGETELRGEIQTLQ 1499 (1760)
Q Consensus 1445 e~q~l~er~~~l~~ql~~~E~k~~~L--~~~~erL~~~L~kae~~e~~Lr~~~~~l~ 1499 (1760)
++..+.+++....++++..|.++..| +.++-.|...++.....=..+..++++++
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56777888888899999999999999 89999998888766655555555555554
No 333
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.92 E-value=1e+02 Score=32.06 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=51.8
Q ss_pred HHHHHHhHHHhhhhhhhhhhhhhhhccc--hhhHHHHHHhhchHHHHhHHhHHHHHHHhhhhhh
Q psy11582 1401 DAEKRALQDELSRTEARVTKLELQRVAL--EGDQQRLQMLLQEKETNLHKLQERCEHQCRNITG 1462 (1760)
Q Consensus 1401 ~~e~r~L~e~l~~~E~r~~~lel~rr~l--egelqR~~l~l~~~E~e~q~l~er~~~l~~ql~~ 1462 (1760)
..+...|.+.+..-+.|.+.+|.....| .+|+.++++.|++..-++..+..+++.+.+++.-
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556667777778899999999999888 8999999999999999999999999888877654
No 334
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.58 E-value=7.2e+02 Score=30.17 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 432 TKAQLAQVGREKEALVKNIEMLRV 455 (1760)
Q Consensus 432 l~~~l~~a~~E~~~l~~~le~L~~ 455 (1760)
.-..++.++-++..|+..+..+-.
T Consensus 157 ~l~DLesa~vkV~WLR~~L~Ei~E 180 (269)
T PF05278_consen 157 TLKDLESAKVKVDWLRSKLEEILE 180 (269)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHH
Confidence 334445566777777777666543
No 335
>PRK02119 hypothetical protein; Provisional
Probab=34.49 E-value=1.1e+02 Score=29.71 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhh
Q psy11582 1455 HQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDT 1505 (1760)
Q Consensus 1455 ~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~ 1505 (1760)
.+..+|.++|.|.+=...+++.|+..+++-...=..|+.++..|..-+.+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456678889999999999999999988877666666666666665555543
No 336
>KOG1937|consensus
Probab=34.47 E-value=1.1e+03 Score=30.39 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 758 LSRLQANLCQLQSHIDKICQQHED 781 (1760)
Q Consensus 758 ~~~~~~e~~~L~~ei~~l~qe~de 781 (1760)
..+.-.-++.+...++++.++-+.
T Consensus 490 ~k~~l~slEkl~~Dyqairqen~~ 513 (521)
T KOG1937|consen 490 QKQYLKSLEKLHQDYQAIRQENDQ 513 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444456666777777777766555
No 337
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=34.19 E-value=1.4e+03 Score=31.22 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy11582 1276 KGVRNLMQQVAQIERERDDLKAMTQALKREIKDL 1309 (1760)
Q Consensus 1276 ~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~ 1309 (1760)
..+..|+-+...+..+..++...+..+-..+...
T Consensus 311 a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~ 344 (632)
T PF14817_consen 311 AHVQQFLAEEDALNKEAQALSQRLQRLLEEIERR 344 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666655555544443
No 338
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=34.17 E-value=6.4e+02 Score=27.38 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 452 MLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506 (1760)
Q Consensus 452 ~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el 506 (1760)
..+.+......-+..++.++++|..+.-.|....+..+-.+..++-...+-..+.
T Consensus 24 k~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~ea 78 (134)
T PF15233_consen 24 KSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEA 78 (134)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444444444444444443333333333
No 339
>PRK04406 hypothetical protein; Provisional
Probab=34.09 E-value=1.2e+02 Score=29.82 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=37.7
Q ss_pred HHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHh
Q psy11582 1454 EHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMD 1504 (1760)
Q Consensus 1454 ~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~ 1504 (1760)
+.+..+|.++|.|.+=...+|+.|+..++.-...=..|+.++.-|..-+.+
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677888999999999999999998887666556666666666554444
No 340
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=34.08 E-value=7.8e+02 Score=28.36 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=14.6
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy11582 511 SDMDAREVELRGKEDMNRRLREDLLIANEDL 541 (1760)
Q Consensus 511 ~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L 541 (1760)
.-++.-..|++.|.......+.++...+..-
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555544443
No 341
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.94 E-value=9.3e+02 Score=33.17 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=14.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 518 VELRGKEDMNRRLREDLLIANEDLKNAKLAK 548 (1760)
Q Consensus 518 ~~L~~LEek~S~Lr~EL~~lrE~L~~~~Ler 548 (1760)
+.+++++++...++.+|..+..+++....+.
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444444444433
No 342
>KOG2991|consensus
Probab=33.85 E-value=9e+02 Score=29.01 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHH-
Q psy11582 527 NRRLREDLLIANEDLKNAKLAK-------------------ELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDM- 586 (1760)
Q Consensus 527 ~S~Lr~EL~~lrE~L~~~~Ler-------------------e~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~l- 586 (1760)
-++|+++|..-+.+|..+..++ -.|.++.+++-...+ +..+++|+.++.=.++.-+++
T Consensus 179 F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s--~Gria~Le~eLAmQKs~seElk 256 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS--EGRIAELEIELAMQKSQSEELK 256 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555555555443 234555555443322 234444444444444443344
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11582 587 ------NEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILF 626 (1760)
Q Consensus 587 ------rdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lf 626 (1760)
-+-+..+...++....-+.-|++++..-|.+++.|+..+.
T Consensus 257 ssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 257 SSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred HhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444433
No 343
>PHA03190 UL14 tegument protein; Provisional
Probab=33.77 E-value=2.6e+02 Score=31.87 Aligned_cols=57 Identities=21% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-----C--------------CCCCCCCCCCCCCCCCCCCCC--CCCCcchhhh
Q psy11582 334 MQQELELLQNTLRDIARAVIQDAEG-----K--------------DIPSRPAPLKRHATFSARPST--SIKPSVTFRK 390 (1760)
Q Consensus 334 ~~~~~~~lq~~l~dia~~~~~d~~~-----~--------------~~~~~~~~~~~~~sp~~~~~~--~r~~s~a~~~ 390 (1760)
.-+.-+.|..++-+|+--+..|.+. + ..++.+++||-.++-+++-|| +.+|||+|.+
T Consensus 113 l~d~E~~L~~a~~ei~l~~~~~~d~~d~ld~ede~LL~kW~Le~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (196)
T PHA03190 113 IADAEIDLECAEAEIALHIPADEDRRDSLDCEEDDLLLKWQLEGANPPSLLPIPHAPSGESRGNSPKSPPGPSPTFQD 190 (196)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcccccccCccHHHHHHHHHHccCCCCccCCCCCCCCccccCCCCCCCCCCCCCccc
Confidence 3444456788888887754443331 0 224455555555444455444 5667888865
No 344
>KOG2751|consensus
Probab=33.50 E-value=8.8e+02 Score=31.22 Aligned_cols=25 Identities=8% Similarity=0.148 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 432 TKAQLAQVGREKEALVKNIEMLRVE 456 (1760)
Q Consensus 432 l~~~l~~a~~E~~~l~~~le~L~~E 456 (1760)
+..+++++..+++.++.-++.|...
T Consensus 148 ld~e~~~~~~e~~~Y~~~l~~Le~~ 172 (447)
T KOG2751|consen 148 LDKEVEDAEDEVDTYKACLQRLEQQ 172 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555555555443
No 345
>KOG4807|consensus
Probab=33.17 E-value=1.1e+03 Score=29.79 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVK 652 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~ 652 (1760)
...+.++.|++..|.++......+.-.|-..+..-.+.+.+...+-..|..-+|++...
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnR 478 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNR 478 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 78899999999999999999998888888887777766666665555555555555443
No 346
>KOG2196|consensus
Probab=32.97 E-value=9.2e+02 Score=28.84 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 464 KREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKN 543 (1760)
Q Consensus 464 r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~ 543 (1760)
...|+.-|.....+++.-.+.+...=.++..+-. .|-...++.+.|..|-+.++-.-+.
T Consensus 73 ~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr---------------------~LI~ngekI~~Ly~e~~~vk~~qkr 131 (254)
T KOG2196|consen 73 YKTLEELINKWSLELEEQERVFLQQATQVNAWDR---------------------TLIENGEKISGLYNEVVKVKLDQKR 131 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------------HHHhCcHHHHHHHHHHHHHHhHHHH
Confidence 4556666777777777777777666655555543 3455667788888888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh--
Q psy11582 544 AKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY----EITIEANDKELQRLQEQLASLRSD-- 617 (1760)
Q Consensus 544 ~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km----~v~l~alEre~~~L~eqla~Lrse-- 617 (1760)
+..+.+.+.++..++..-|..+|.....+....- -...+.-|....+| ..++..+-.++..+-+.+....+-
T Consensus 132 Ldq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~--~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d 209 (254)
T KOG2196|consen 132 LDQELEFILSQQQELEDLLDPLETKLELQSGHTY--LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVD 209 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh--hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccc
Confidence 8888888888888877777777776666544211 22222333333333 555555666666555555555443
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 618 ----KESLEAILFDTQSHLEQSDVKKEQLEHEVQELL 650 (1760)
Q Consensus 618 ----KesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~ 650 (1760)
.-.+...|.-....+..++..-.++++.+..+.
T Consensus 210 ~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~ 246 (254)
T KOG2196|consen 210 KTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIK 246 (254)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334556666655556666666666655555443
No 347
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.67 E-value=1.7e+03 Score=31.96 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=8.5
Q ss_pred CCCChHhHHHHH
Q psy11582 1267 IDVDPEIVRKGV 1278 (1760)
Q Consensus 1267 ~d~Dp~~vr~~l 1278 (1760)
..+||+.....+
T Consensus 989 ~~LD~~~~~~~~ 1000 (1042)
T TIGR00618 989 GSLDEDSLDRAI 1000 (1042)
T ss_pred CCCCHHHHHHHH
Confidence 367998876655
No 348
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.50 E-value=3.2e+02 Score=27.94 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy11582 444 EALVKNIEMLRVEKSALEKNKREINE---MVESLNSNLDKVQKNNSRLSKINESLQSEKL 500 (1760)
Q Consensus 444 ~~l~~~le~L~~Ek~~Le~~r~eL~~---eve~Le~e~ekLk~~~~eLqrq~d~leeEk~ 500 (1760)
..+...++.+..+.+.+.+.+..+.. .++.+-.+...++..+..++.++..++.++.
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444333333 2334444444444444444444444444433
No 349
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=31.85 E-value=7e+02 Score=27.11 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11582 731 EKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHID 773 (1760)
Q Consensus 731 EKe~~~~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L~~ei~ 773 (1760)
.++..+...+.++..+..+++.++..+...+..+...|...|.
T Consensus 93 ~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~ 135 (141)
T PRK08476 93 KIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALN 135 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445556666777777777777777776666666666665553
No 350
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=31.83 E-value=1.2e+03 Score=29.77 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=114.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHH-------
Q psy11582 281 ELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLV----EEMQQELELLQNTLRDIA------- 349 (1760)
Q Consensus 281 eLq~rl~el~~~~e~l~~q~~eke~~i~~L~~~l~~LEs~~~~~~~~~~~~----~~~~~~~~~lq~~l~dia------- 349 (1760)
.||+.-+-+..-++.-..+-++.+.--..|+.+........++++.+..-+ ....+++--||+-|.|=+
T Consensus 143 ~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe~e 222 (558)
T PF15358_consen 143 TLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAE 222 (558)
T ss_pred HHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccCcchhhhh
Confidence 566666666666776666666666666666666655555555544443222 122222222233332110
Q ss_pred -HHHHhccCCCC--CCCC--CCC---CCCCCCCCCCCCCCCCCcchhhhh-----chhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 350 -RAVIQDAEGKD--IPSR--PAP---LKRHATFSARPSTSIKPSVTFRKE-----TKLATHREQLHTMKKQYESADESQY 416 (1760)
Q Consensus 350 -~~~~~d~~~~~--~~~~--~~~---~~~~~sp~~~~~~~r~~s~a~~~~-----~KLestqe~L~rLrdqL~EvE~e~r 416 (1760)
+..-+--+++. ++.+ ..+ ++.+.||. .|+++++..++.+.. -==.-+.+.+..+-.=|+++.+.+.
T Consensus 223 ~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~-~p~~~~~l~~~~~~~~~rage~~~~seq~lqk~~s~LEelRrevs 301 (558)
T PF15358_consen 223 WQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPE-EPPRPRNLAPAGWGGGPRAGEGPELSEQELQKVSSGLEELRREVS 301 (558)
T ss_pred HHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCC-CCCCcccccccccccCCCCCCCccccHHhhcccCccHHHHHHHHH
Confidence 01111111110 0110 000 11112222 223344445554433 0011234456666666678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHH
Q psy11582 417 NMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQ 496 (1760)
Q Consensus 417 ~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~le 496 (1760)
.|-.+-.+-.........-+-.+...++.|--.-+....+.......+++|....+.+-.-+++--..+..|...++-+-
T Consensus 302 sLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~versavs~asLrseLeglg 381 (558)
T PF15358_consen 302 SLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERSAVSVASLRSELEGLG 381 (558)
T ss_pred HHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhccc
Confidence 77766655333333344444456667777777777777888888888888888888888888877777777776666543
No 351
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=31.34 E-value=1.3e+03 Score=30.22 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy11582 651 VKQESLKGQVV 661 (1760)
Q Consensus 651 ~~~E~Lq~el~ 661 (1760)
..++.++..|.
T Consensus 147 e~l~~f~~~v~ 157 (475)
T PRK10361 147 EQLDGFRRQVQ 157 (475)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 352
>KOG4302|consensus
Probab=31.17 E-value=1.5e+03 Score=30.88 Aligned_cols=312 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q psy11582 443 KEALVKNIEMLRVEKSALEKNKREINEMVESLNSNL-DKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELR 521 (1760)
Q Consensus 443 ~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~-ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~ 521 (1760)
+..|+.--+.++...+.-......|..++-..=..+ +.....-..|...+..++.+..++-..++....-..
T Consensus 20 ~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~------- 92 (660)
T KOG4302|consen 20 LNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE------- 92 (660)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhH---------------HHHHHHHHhHHHHH
Q psy11582 522 GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDV---------------EAEMERLLLDRSDM 586 (1760)
Q Consensus 522 ~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeL---------------E~elekLrsE~a~l 586 (1760)
.++.....|+..|..+...+..+..+++.=..+.-++-..+.++-..++.- -..++.++.....+
T Consensus 93 ~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L 172 (660)
T KOG4302|consen 93 ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNEL 172 (660)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 587 NEQISKYEITIEANDKELQRLQEQL-ASLRSDKESLEAILFDTQS---------HLEQSDVKKEQLEHEVQELLVKQESL 656 (1760)
Q Consensus 587 rdsL~Km~v~l~alEre~~~L~eql-a~LrseKesLEs~Lfe~Qq---------~l~qle~ekeqLE~E~q~l~~~~E~L 656 (1760)
++.-+.=...+......+..+...| ..+..-....+.+|-+.-. .+..+......|..+...-..++..+
T Consensus 173 ~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l 252 (660)
T KOG4302|consen 173 QKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDL 252 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHhhHHhhhhhHHHHhhhhccHHHHHHhH
Q psy11582 657 KGQVVRLNKELEDTEKRAQET-------KASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLT 729 (1760)
Q Consensus 657 q~el~rL~~ele~~~~~~~~~-------~~~l~~ql~q~E~e~q~~L~~~~~ah~E~~~~~~~~~~~~~~~~~~~~~rL~ 729 (1760)
...+-.|=.-+++.......= .+. -...++...... +.+|..|..+|.-. .++=|.+.+
T Consensus 253 ~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~----------~~~ls~d~I~~v-e~Ev~Rl~qlK~s~---mKeli~k~r 318 (660)
T KOG4302|consen 253 RTKLLELWNLLDTSDEERQRFVHVTESEATE----------PNSLSLDIIEQV-EKEVDRLEQLKASN---MKELIEKKR 318 (660)
T ss_pred HHHHHHHHHhccCCHHHHHHHccccHHHhhc----------cccccHHHHHHH-HHHHHHHHHHHHHh---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-----------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 730 EEKEQVRAALEKKL-----------------HATVKQITEEKDCELSRLQANLCQLQSHIDKIC 776 (1760)
Q Consensus 730 ~EKe~~~~~l~~e~-----------------~~a~~~l~~ek~el~~~~~~e~~~L~~ei~~l~ 776 (1760)
.|.+.+|..+...- .+.+.-|.. ++.++.+...+..--+.=|..+.
T Consensus 319 ~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~-~d~~i~k~keea~srk~il~~ve 381 (660)
T KOG4302|consen 319 SELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLEN-IDNLIKKYKEEALSRKEILERVE 381 (660)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
No 353
>KOG2264|consensus
Probab=31.07 E-value=3.1e+02 Score=35.84 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 453 LRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFL 502 (1760)
Q Consensus 453 L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el 502 (1760)
++.|...++..+++|+.+|+.++..++.+|+.+...+..+..++.+.+..
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 44555566666677777776666666666666655555555554444433
No 354
>KOG4403|consensus
Probab=31.02 E-value=1.1e+03 Score=30.19 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=21.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 515 AREVELRGKEDMNRRLREDLLIANEDLKNAKLAKEL 550 (1760)
Q Consensus 515 ~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~ 550 (1760)
++..--++++...++ +||..+|.+|..++.+.+.
T Consensus 294 rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 294 RLSELREGVENETSR--KELEQLRVALEKAEKELEA 327 (575)
T ss_pred hhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 333333455555555 5888888888888776553
No 355
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=30.98 E-value=1.1e+03 Score=29.15 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy11582 557 EMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY 593 (1760)
Q Consensus 557 el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km 593 (1760)
++...+.+++.++.+....++.++.+++++++.+.+.
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777655
No 356
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.46 E-value=1.1e+03 Score=28.85 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 531 REDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ 605 (1760)
Q Consensus 531 r~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~ 605 (1760)
+.-|-...+.|..=.-+++.|..++.-..+.+-.=|....+..++|-+-|-|+..|+.-++.|..-+....+-++
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Confidence 333334444455555566666666666666666666667777777777777777777777766665555555555
No 357
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.43 E-value=29 Score=36.55 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=33.7
Q ss_pred CChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy11582 1269 VDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQ 1315 (1760)
Q Consensus 1269 ~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~ 1315 (1760)
.||+-|+.-|..+...+..+.++.++++.++..|..++.+.......
T Consensus 18 Yd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~ 64 (131)
T PF05103_consen 18 YDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEES 64 (131)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 58899999999999999999999999888888888877776555444
No 358
>KOG3838|consensus
Probab=29.93 E-value=9.2e+02 Score=30.65 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHhHhhHhhHHHhHHH
Q psy11582 172 DLEKLTTDWTHLREEMAMKEKDWI--------EEEQYFNDYYSSEHARLLALWRDVVDIKRSFTAMQSATEQDLSKIRSD 243 (1760)
Q Consensus 172 dl~klt~dw~~~r~EL~~KE~~wr--------~ee~~f~~Y~~~Eh~rlL~LWRevv~~Rr~f~E~ksaTeRdL~~~r~E 243 (1760)
+.+|++..|++++.||+.++++++ +.++-|.-|=+--|++|.-.|+---++-.++.+| +|-|..+-..
T Consensus 273 ek~kyqeEfe~~q~elek~k~efkk~hpd~~~e~ee~~~~yEs~~~Relrqi~egQn~i~~~l~ql----~rql~~il~~ 348 (497)
T KOG3838|consen 273 EKAKYQEEFEWAQLELEKRKDEFKKSHPDAQGEGEELFDLYESLGHRELRQILEGQNAIHKQLAQL----ERQLDKILGP 348 (497)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhccCCchhhcchhhhhhhhhccchHHHHHHHhhhhHHHHHHHHH----HHHHHHHhCc
Confidence 568899999999999999998885 4677777666777999999999877777777665 6667776666
Q ss_pred HHHH
Q psy11582 244 LNQS 247 (1760)
Q Consensus 244 ~~r~ 247 (1760)
.+|.
T Consensus 349 Q~~~ 352 (497)
T KOG3838|consen 349 QARP 352 (497)
T ss_pred cccC
Confidence 5555
No 359
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=7.3e+02 Score=26.64 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy11582 529 RLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKS 568 (1760)
Q Consensus 529 ~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~s 568 (1760)
.....+-.+.+.+..+-.++.-++.++.+...+|..++.-
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455566677777777777777777777777777766643
No 360
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.49 E-value=6.8e+02 Score=26.20 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=7.6
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy11582 813 KELEEEKCTLDRIKRES 829 (1760)
Q Consensus 813 ~eL~~a~~eler~rrea 829 (1760)
+++......|+.-+.+.
T Consensus 7 re~~~~~~~l~~kr~e~ 23 (126)
T PF13863_consen 7 REMFLVQLALDTKREEI 23 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 361
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.99 E-value=6.3e+02 Score=25.70 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=22.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11582 520 LRGKEDMNRRLREDLLIANED-LKNAKLAKELLEQNKEEMQTLLAHIEK 567 (1760)
Q Consensus 520 L~~LEek~S~Lr~EL~~lrE~-L~~~~Lere~Leqek~el~~aL~~aE~ 567 (1760)
+..|+++...+..+|...... ...+...++.++.....+..+...++.
T Consensus 52 ~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 52 RNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554432 334444444444444444444444443
No 362
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=28.76 E-value=6.1e+02 Score=25.42 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=29.4
Q ss_pred HHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy11582 504 NELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKE 556 (1760)
Q Consensus 504 ~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~ 556 (1760)
..+..+..-+..+...+.........+..++...++.+..+..+...++.-++
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e 97 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555566666666666666666666666666544433
No 363
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=28.45 E-value=1.4e+03 Score=29.55 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHH
Q psy11582 530 LREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVE 573 (1760)
Q Consensus 530 Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE 573 (1760)
+..||..+=|.-..+.++-|++. .+..-|.++....+-.+
T Consensus 284 WE~EL~~VcEEqqfL~lQedL~~----DL~dDL~ka~eTf~lVe 323 (426)
T smart00806 284 WEAELDKVCEEQQFLTLQEDLIA----DLKEDLEKAEETFDLVE 323 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44677777777777777777763 33444444444444333
No 364
>PRK02793 phi X174 lysis protein; Provisional
Probab=28.30 E-value=1.5e+02 Score=28.70 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=36.5
Q ss_pred HhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHh
Q psy11582 1456 QCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMD 1504 (1760)
Q Consensus 1456 l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~ 1504 (1760)
+..+|.++|.|.+=...+++.|+..+++-...=..|..++.-|..-+.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567888999999999999999998887766556666666655555544
No 365
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.27 E-value=5.2e+02 Score=34.04 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=15.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 519 ELRGKEDMNRRLREDLLIANEDLKNAKLAKELL 551 (1760)
Q Consensus 519 ~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~L 551 (1760)
.+..|+++...+..++..+..++..+...+..|
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 366
>KOG2751|consensus
Probab=28.10 E-value=1.3e+03 Score=29.66 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy11582 396 THREQLHTMKK 406 (1760)
Q Consensus 396 stqe~L~rLrd 406 (1760)
++=-.+..+.+
T Consensus 114 ~~~~~~~~~f~ 124 (447)
T KOG2751|consen 114 ATINVLTRLFD 124 (447)
T ss_pred HHHHHHHHHHH
Confidence 33333334444
No 367
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.06 E-value=7.8e+02 Score=26.45 Aligned_cols=36 Identities=39% Similarity=0.446 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11582 598 EANDKELQRLQEQLASLRSDKESLEAILFDTQSHLE 633 (1760)
Q Consensus 598 ~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~ 633 (1760)
.+.-.+.+.+.+++..+-.+|..+++.|.++..-+.
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~ 44 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALE 44 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666655544333
No 368
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.06 E-value=1.7e+02 Score=32.48 Aligned_cols=64 Identities=22% Similarity=0.354 Sum_probs=44.6
Q ss_pred ChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy11582 1270 DPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTK 1345 (1760)
Q Consensus 1270 Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~ 1345 (1760)
+...++..+.+|-.++..+..+-..+++.+..|.+.++.. .|...+..++.+...++.+|...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~------------el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE------------ELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888899999999999999999999999998887442 233444444444555555554444
No 369
>KOG0243|consensus
Probab=28.02 E-value=2e+03 Score=31.27 Aligned_cols=448 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy11582 405 KKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKN 484 (1760)
Q Consensus 405 rdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~ 484 (1760)
++.+-+-+.+++....+++++..++..+...+.++.-.+-........|..++..++..+..-..++..+..++.+.+..
T Consensus 433 ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 433 EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Q psy11582 485 NSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELL------------E 552 (1760)
Q Consensus 485 ~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~L------------e 552 (1760)
+.+.+..++.+..--..+...--..++..+..+..+..|=.+.-+....-..-+..+....-+.... .
T Consensus 513 l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s 592 (1041)
T KOG0243|consen 513 LKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSS 592 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q ss_pred HhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Q psy11582 553 QNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY-------------------EITIEANDKELQRLQEQLAS 613 (1760)
Q Consensus 553 qek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km-------------------~v~l~alEre~~~L~eqla~ 613 (1760)
+...-+..-+...+.-+..+....+-++......++-+... .+-....-..+..+...+..
T Consensus 593 ~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~ 672 (1041)
T KOG0243|consen 593 QQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLET 672 (1041)
T ss_pred hHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy11582 614 LRSDKESLEAILFDTQS---HLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDA 690 (1760)
Q Consensus 614 LrseKesLEs~Lfe~Qq---~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E~ 690 (1760)
+.+.-+.+...+...-. .+..+-+. +-........-..+.+..-...+.+.++.+..++.-.......-+.+.-.
T Consensus 673 ~~~~~~~~~~~i~~~l~~q~~~~~l~~~--qe~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1041)
T KOG0243|consen 673 IANTADDLLQNISSRLSNQQEILSLFAN--QELQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLS 750 (1041)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 691 DYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQS 770 (1760)
Q Consensus 691 e~q~~L~~~~~ah~E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L~~ 770 (1760)
+++-..+. .+.+....+.+.+.++-+.++...+-+..-...++.. -...+-.+...-.-...|..
T Consensus 751 ~~~~~~~~---~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~~~------------~~~~~~~~~e~~~~~~~l~~ 815 (1041)
T KOG0243|consen 751 SFQKKFES---IAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLRSA------------VNSRESNLTESVSVMQNLSD 815 (1041)
T ss_pred HHhhhHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hccchhHHHHhhHHHhhhhH
Q ss_pred HHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHHHHHHHHH
Q psy11582 771 HIDKICQQHEDALLRAEGDKQQALLIAQQDQKAI----QDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQ 846 (1760)
Q Consensus 771 ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L----~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~i~~l~eE 846 (1760)
.+....+.+-. +.++.....+...+.=++++ .+-+..+..-....+...+-++..-.....---..+....++
T Consensus 816 ~~k~~~~~~~~---~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~ 892 (1041)
T KOG0243|consen 816 DLKTIWQTLGK---QNENHHNEVLSAIEEKQQAMKSVLKELLENAESQVDECKEAIESLKSLESNHVATLDSLVRGVSEQ 892 (1041)
T ss_pred HHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 847 LNRTVAKLEELKTRTEEEKAILERKI 872 (1760)
Q Consensus 847 L~~~~~~leea~~~lq~El~~Leeql 872 (1760)
-..++.+|-.++..+..-...+...+
T Consensus 893 ~~k~~~e~~s~~~~~~~~~~~~~~~i 918 (1041)
T KOG0243|consen 893 NKKLQDEFLSLLNSKLNSFDVLTNSI 918 (1041)
T ss_pred hHHhhHHHHHHHhHHHhhhhhccccc
No 370
>KOG0992|consensus
Probab=28.01 E-value=1.5e+03 Score=29.76 Aligned_cols=211 Identities=18% Similarity=0.172 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11582 425 LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQN 504 (1760)
Q Consensus 425 Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~ 504 (1760)
++.+..+....+ +..+++.+...+..+..++-.-+.-...-..+++++..+++.++.--.-+.+.+..++......+.
T Consensus 113 ik~E~ea~~k~l--~q~~~d~l~~~~~fle~Ek~d~e~~m~~~~~q~Esls~~le~~~~~~~~~~kl~ie~e~~~h~~qq 190 (613)
T KOG0992|consen 113 IKCEEEAKIKNL--QQIEIDKLKNLLSFLEQEKVDREGLMRQQTQQIESLSEELERLRPIESVAEKLRIELEQLRHSTQQ 190 (613)
T ss_pred HHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777 778888888888888888866666666677778888777776555443344444333333332222
Q ss_pred HHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHH
Q psy11582 505 ELDRINSDMDAREVELRGKEDMNRRLREDLLIANED---------LKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAE 575 (1760)
Q Consensus 505 el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~---------L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~e 575 (1760)
.-.....-....++..+.+- .+|+-...+.-++ |..+.-+...++.+.+.+.+.++.++.+-..-...
T Consensus 191 ~e~~l~t~~a~~e~~nrh~~---erlk~~~~s~~e~l~kl~~EqQlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~ 267 (613)
T KOG0992|consen 191 EENLLTTTLAAVEEENRHLK---ERLKIVEESRLESLGKLNSEQQLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLA 267 (613)
T ss_pred HHHHhccchHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 22222111112222222111 1122222222222 33344444444444444444444444333333333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 576 MERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQES 655 (1760)
Q Consensus 576 lekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~ 655 (1760)
.+++++.....+. ++.++.|.....++.-..+..+....++ +.....+.+.....-++.
T Consensus 268 ~ek~r~~lee~~~--------------------~e~~e~rk~v~k~~~l~q~~~~~~~eL~-K~kde~~~n~~~~~lie~ 326 (613)
T KOG0992|consen 268 LEKQRSRLEEQVA--------------------EETTEKRKAVKKRDDLIQSRKQVSFELE-KAKDEIKQNDDKVKLIEE 326 (613)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchHHHHHHH
Confidence 3333333222211 1344455555555555555555555555 555555666666666666
Q ss_pred HHHHHH
Q psy11582 656 LKGQVV 661 (1760)
Q Consensus 656 Lq~el~ 661 (1760)
++.++.
T Consensus 327 lq~el~ 332 (613)
T KOG0992|consen 327 LQDELS 332 (613)
T ss_pred HHHHHH
Confidence 555544
No 371
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.92 E-value=2.9e+02 Score=26.87 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 1559 DDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQT 1610 (1760)
Q Consensus 1559 ~~l~~r~q~Lq~~l~d~e~~l~q~~~~e~~~~~~~~~lq~e~~~l~~rl~~~ 1610 (1760)
+++.+||-.|+..++-.+.++..-...-.+-++.+..|+.....|.++|..+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888888887777666666666666677766666666666544
No 372
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.75 E-value=5.4e+02 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=8.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q psy11582 518 VELRGKEDMNRRLREDLLIANED 540 (1760)
Q Consensus 518 ~~L~~LEek~S~Lr~EL~~lrE~ 540 (1760)
.+|...+.++..|..++..+++.
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 373
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.53 E-value=1.1e+03 Score=28.13 Aligned_cols=186 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHhhccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Q psy11582 818 EKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKIS-----------------DLKSERE 880 (1760)
Q Consensus 818 a~~eler~rrea~~~~e~er~~i~~l~eEL~~~~~~leea~~~lq~El~~Leeqle-----------------eLq~E~~ 880 (1760)
...+||++..=+ +.||.+.-+|...+..|..+.......+..+-..+. .++.+..
T Consensus 9 Vq~eLe~LN~at--------d~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q 80 (239)
T PF05276_consen 9 VQEELEKLNQAT--------DEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQ 80 (239)
T ss_pred HHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy11582 881 ALVTESEELKVQLHLSEDKVDTVQAQLLETA---------RRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKD 951 (1760)
Q Consensus 881 ~l~~EiEkLqsqL~LlEERid~lr~ele~Le---------reL~elee~~e~LrkEL~elrr~Ladle~Eke~lq~sl~E 951 (1760)
..-...++..+-.....+.+......+..-. +.|+..-.+......+........................
T Consensus 81 ~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~ 160 (239)
T PF05276_consen 81 KAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQ 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 952 LREMVKKVESEKRDQARTIDEGLQKIAVRF-GDDEKQALRNQLNDQSNDVASLKKELLQAEQIR 1014 (1760)
Q Consensus 952 Lre~Lkk~Ese~~eler~iEe~~qkl~~L~-l~qE~aeLrnqLrelE~e~~elr~eLqeLeqE~ 1014 (1760)
|+..++..-....=+-.........+ . ....+..|...+.........+-+.|..+-.++
T Consensus 161 Lek~lkr~I~KSrPYfe~K~~~~~~l---~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 161 LEKKLKRAIKKSRPYFELKAKFNQQL---EEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=27.47 E-value=5.6e+02 Score=30.23 Aligned_cols=83 Identities=22% Similarity=0.396 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 571 DVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLE--AILFDTQSHLEQSDVKKEQLEHEVQE 648 (1760)
Q Consensus 571 eLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLE--s~Lfe~Qq~l~qle~ekeqLE~E~q~ 648 (1760)
.++.++.+---+.+++++.++||. ++++..+..++..||.+|-.|. ..|.+.- ...+-++++.|++..+.
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~------~~qv~~in~qlErLRL~krrlQl~g~Ld~~~--q~~~~ae~seLq~r~~~ 232 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMV------EQQVRVINSQLERLRLEKRRLQLNGQLDDEF--QQHYVAEKSELQKRLAQ 232 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhcccccHHH--HHHHHHHHHHHHHHHHH
Confidence 355566666667778888888874 3455566666666666654432 2333221 23344555666666655
Q ss_pred HHHHHHHHHHHHH
Q psy11582 649 LLVKQESLKGQVV 661 (1760)
Q Consensus 649 l~~~~E~Lq~el~ 661 (1760)
+......++.++.
T Consensus 233 l~~~L~~L~~e~~ 245 (289)
T COG4985 233 LQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHhhhhh
Confidence 5555555555544
No 375
>KOG1760|consensus
Probab=27.39 E-value=7.9e+02 Score=26.52 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=35.1
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy11582 562 LAHIEKSKGDVEAEMERLLLDRSDMNEQISKY-----------------------EITIEANDKELQRLQEQLASLRSDK 618 (1760)
Q Consensus 562 L~~aE~slaeLE~elekLrsE~a~lrdsL~Km-----------------------~v~l~alEre~~~L~eqla~LrseK 618 (1760)
+++.-+...++..++...+.+...+-++...+ .+-...++..-..+.++|+.++++.
T Consensus 25 Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~ 104 (131)
T KOG1760|consen 25 FSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESEL 104 (131)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555554443 3334444444455555555555555
Q ss_pred HHHHHHHHHHH
Q psy11582 619 ESLEAILFDTQ 629 (1760)
Q Consensus 619 esLEs~Lfe~Q 629 (1760)
++..+.+.++.
T Consensus 105 e~I~~~m~~LK 115 (131)
T KOG1760|consen 105 ESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 376
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=27.36 E-value=1.5e+03 Score=29.43 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHH
Q psy11582 465 REINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMN-RRLREDLLIANEDLKN 543 (1760)
Q Consensus 465 ~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~-S~Lr~EL~~lrE~L~~ 543 (1760)
..|-..|+-|+--++.|+... .++-......+++.+..++..+.+++......+..+.--- .-+-.||..+-+.-..
T Consensus 216 d~Ll~kVdDLQD~VE~LRkDV--~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqf 293 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRKDV--VQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQF 293 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333343332 2344455555555666556555555555555554444332 2344566666666666
Q ss_pred HHHHHHHH
Q psy11582 544 AKLAKELL 551 (1760)
Q Consensus 544 ~~Lere~L 551 (1760)
+.++-+++
T Consensus 294 L~~QedL~ 301 (424)
T PF03915_consen 294 LKLQEDLL 301 (424)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 377
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.87 E-value=1.2e+03 Score=28.32 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 399 EQLHTMKKQYESADESQYNMSQQVTS---LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLN 475 (1760)
Q Consensus 399 e~L~rLrdqL~EvE~e~r~Le~Qaqk---Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le 475 (1760)
.++-.++..-+++=...-+|.-.+.+ ++..+......--+...-=..++..+..+..+...++..+..+...-..|+
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le 196 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLE 196 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666667777666665 333322221111111111122334444444455555555555555555555
Q ss_pred HhHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhHHHHHHHhhHHHHH
Q psy11582 476 SNLDKVQKNNSRLSKINESLQ-------SEKLFLQNELDRINSDMDAREVELRGKEDMN 527 (1760)
Q Consensus 476 ~e~ekLk~~~~eLqrq~d~le-------eEk~el~~el~r~~~E~e~~q~~L~~LEek~ 527 (1760)
..+++.+.++...++.+..++ +|++.++.++...=..--..-+++.+|+...
T Consensus 197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555555555555555555544 4444444444333333333344555555443
No 378
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.86 E-value=2e+02 Score=30.05 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=46.0
Q ss_pred HhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhc
Q psy11582 1437 MLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASA 1486 (1760)
Q Consensus 1437 l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~ 1486 (1760)
..+..+|..+..+.+.+..|..++..+...++.|+.+.++|...|.+.+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999999999999999988755
No 379
>PRK00295 hypothetical protein; Provisional
Probab=26.70 E-value=1.6e+02 Score=28.25 Aligned_cols=52 Identities=21% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhh
Q psy11582 1455 HQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTS 1506 (1760)
Q Consensus 1455 ~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~ 1506 (1760)
++..+|.++|.|.+=...+++.|+..+++-...=..|+.++..|..-+.+..
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 380
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.11 E-value=6.1e+02 Score=33.04 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 399 EQLHTMKKQYESADESQYNMSQQVTSLTSQLD 430 (1760)
Q Consensus 399 e~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~ 430 (1760)
+.|..|--++.+++..+..|..+-+.|+.+-+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333
No 381
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.97 E-value=5.9e+02 Score=29.50 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 396 THREQLHTMKKQYESADESQYNMSQQVTS 424 (1760)
Q Consensus 396 stqe~L~rLrdqL~EvE~e~r~Le~Qaqk 424 (1760)
.+.-...+|+.+|.+.+..+...+..+..
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567777777777777777776664
No 382
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.97 E-value=1.6e+02 Score=32.87 Aligned_cols=59 Identities=36% Similarity=0.501 Sum_probs=43.4
Q ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHHHH------HHHhhhhhhcccccccHHHHHHHHHhhhhhhhhccCCCc
Q psy11582 1656 LCRERSELRNKLENLHDKIQMLRDQLNS------EIKRRQLYIYRDTRAGKEMQQLRQALGDSLRTVAHDPAV 1722 (1760)
Q Consensus 1656 ~q~e~~~~r~~~~~l~~~~~~l~~ql~~------e~~r~~~~~~~~~~~~~~~~~l~~~~~~sl~~v~~~~~~ 1722 (1760)
...|+-+||..+--+++.|.+||.=|.. ||| |.++|+. +..|++-|..++++|-.--+|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLK-rkLGit~-------l~elkqnlskg~~~vq~S~aY 91 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELK-RKLGITP-------LSELKQNLSKGWHDVQDSNAY 91 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHCCch-------HHHHHHHHHHHhHhhhchhHH
Confidence 3467888999999999999999877664 666 5566643 456778888888877655444
No 383
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.88 E-value=5.8e+02 Score=28.39 Aligned_cols=54 Identities=19% Similarity=0.385 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHhHHHHHHHH
Q psy11582 440 GREKEALVKNIEMLRVEKSALEKNKREINEMVESLNS---NLDKVQKNNSRLSKINE 493 (1760)
Q Consensus 440 ~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~---e~ekLk~~~~eLqrq~d 493 (1760)
+..|...+..+..+..+...+...+...+.+|..|.. +.+.|+..+.+++..+.
T Consensus 12 gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 12 GKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555544 44444444444444444
No 384
>PRK14127 cell division protein GpsB; Provisional
Probab=25.55 E-value=1.7e+02 Score=30.78 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=42.2
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy11582 1268 DVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQ 1315 (1760)
Q Consensus 1268 d~Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~ 1315 (1760)
..||+-|+.-|-..+..+..+.+|..+++.++.+|+.++.+.+.....
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 358899999999999999999999999999999999999988876654
No 385
>PF15456 Uds1: Up-regulated During Septation
Probab=25.50 E-value=6.9e+02 Score=26.92 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 884 TESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENV 920 (1760)
Q Consensus 884 ~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~ 920 (1760)
.+++.++-++..+..+++.+++.+. ++..+.++-..
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~s 57 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHS 57 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3566666666666666776666665 55555555444
No 386
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.27 E-value=7.9e+02 Score=29.50 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=42.8
Q ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHH
Q psy11582 469 EMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMN 527 (1760)
Q Consensus 469 ~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~ 527 (1760)
.-+.....+-++.|.-|.+|+.++.....+...+..+++.++.|=--+-+.+++|..=.
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34555666667888888888888888888888888888777777666667777765433
No 387
>PRK00846 hypothetical protein; Provisional
Probab=25.25 E-value=4.5e+02 Score=26.13 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11582 544 AKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEA 599 (1760)
Q Consensus 544 ~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~a 599 (1760)
+.+.-+.++..+.++...++-.+..+.+|...+.+....++.++..+..|..++.+
T Consensus 4 ~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 4 LSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777777777766666655555555555444444443
No 388
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.17 E-value=7e+02 Score=24.98 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhHHH
Q psy11582 416 YNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSA---------------LEKNKREINEMVESLNSNLDK 480 (1760)
Q Consensus 416 r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~---------------Le~~r~eL~~eve~Le~e~ek 480 (1760)
..+-.+...+..++..+...+..+...+..+...+..|..-... .......|...++.++.++.+
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy11582 481 VQKNNSRLSKINESLQSEKL 500 (1760)
Q Consensus 481 Lk~~~~eLqrq~d~leeEk~ 500 (1760)
+......+...+..++..+.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 389
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.91 E-value=1e+03 Score=26.79 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy11582 486 SRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIAN-EDLKNAKLAKELLEQNKEEMQTLLAH 564 (1760)
Q Consensus 486 ~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lr-E~L~~~~Lere~Leqek~el~~aL~~ 564 (1760)
...+.....+.+-+.+-...+...---+.-.++..-.+....+.++.|+...+ ..+..+..+.+.|..+.+.+...|..
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 565 -IEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAIL 625 (1760)
Q Consensus 565 -aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~L 625 (1760)
+..-.++...+++--+++..+....+ ...+..+..++. .+++.++++++++...+
T Consensus 99 ei~~l~a~~klD~n~eK~~~r~e~~~~---~~ki~e~~~ki~---~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 99 EINKLRAEVKLDLNLEKGRIREEQAKQ---ELKIQELNNKID---TEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
No 390
>PRK00736 hypothetical protein; Provisional
Probab=24.84 E-value=1.7e+02 Score=28.04 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=34.0
Q ss_pred hhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHh
Q psy11582 1457 CRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMD 1504 (1760)
Q Consensus 1457 ~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~ 1504 (1760)
..+|.++|.|.+=...+++.|+..+++=...=..|..++..|..-+.+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888889999999988877665555566665555554444
No 391
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.78 E-value=4.1e+02 Score=27.21 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 528 RRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ 605 (1760)
Q Consensus 528 S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~ 605 (1760)
...-.++..+-.....+..+.+.+..++..+...+..+.... ...+.+..+...+.+.+..+..++..++.++.
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777777777777766666544 22333344444444444333444444444433
No 392
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.66 E-value=6.7e+02 Score=24.53 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=24.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 609 EQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRL 663 (1760)
Q Consensus 609 eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL 663 (1760)
++|+.|..+=+.|...-......+..|.+....++..+..+...++....++..+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444433
No 393
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.54 E-value=8.7e+02 Score=25.83 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11582 538 NEDLKNAKLAKELLEQN 554 (1760)
Q Consensus 538 rE~L~~~~Lere~Leqe 554 (1760)
...++.+..++..++.+
T Consensus 20 q~~l~~~~~q~~~le~q 36 (121)
T PRK09343 20 QQQLERLLQQKSQIDLE 36 (121)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 394
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=24.53 E-value=7.7e+02 Score=28.05 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11582 837 RNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQL 893 (1760)
Q Consensus 837 r~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL 893 (1760)
++.+..+..+|..|+..+..-...+......+...+..-...+..+..+++.+++.+
T Consensus 123 q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 123 QDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888877777777777777777777776665
No 395
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=24.21 E-value=1.6e+03 Score=28.89 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11582 657 KGQVVRLNKELEDTEKRAQ 675 (1760)
Q Consensus 657 q~el~rL~~ele~~~~~~~ 675 (1760)
+.++.+|..+.++..+-.+
T Consensus 372 ~~~l~~L~Re~~~~r~~ye 390 (458)
T COG3206 372 QVQLRELEREAEAARSLYE 390 (458)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4445555555555444433
No 396
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=24.19 E-value=1e+03 Score=26.55 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHh
Q psy11582 763 ANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQD 836 (1760)
Q Consensus 763 ~e~~~L~~ei~~l~qe~de~ll~aE~ekqQaL~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~e 836 (1760)
.+-+..+++...+..+.+..|-.|..+-++++.........+.+.. ++.+..+.++++.+|...-+++
T Consensus 45 d~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea------~~eA~~ea~r~~~~A~~~Ie~E 112 (154)
T PRK06568 45 LKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEK------TKEIEEFLEHKKSDAIQLIQNQ 112 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777777677777777777755555554444433 3555566666666655433333
No 397
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.18 E-value=8.4e+02 Score=25.50 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQ 589 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrds 589 (1760)
..+-..|..+...|....+....-++.....+.............-......+..|...+..++++...+.+.
T Consensus 31 ~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 31 KQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666555555555555554444444444444444444444444444444444433333
No 398
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=24.06 E-value=1.4e+03 Score=27.91 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.3
Q ss_pred HHhhHHHHHHHHHHH
Q psy11582 519 ELRGKEDMNRRLRED 533 (1760)
Q Consensus 519 ~L~~LEek~S~Lr~E 533 (1760)
+-......|..+-..
T Consensus 116 N~~~s~~~C~~~l~~ 130 (297)
T PF02841_consen 116 NEEASEKKCQALLQE 130 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 399
>KOG4677|consensus
Probab=23.65 E-value=1.7e+03 Score=28.90 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=41.8
Q ss_pred HHhHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 475 NSNLDKVQKNNSRLSKINES--LQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLE 552 (1760)
Q Consensus 475 e~e~ekLk~~~~eLqrq~d~--leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Le 552 (1760)
.-.+..-++.+.+++...+. +..-+++++.-..+...-+..-.. --.+......++-|+..-++.+..+..++-.|+
T Consensus 258 ~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k-stas~~E~ee~rve~~~s~ed~~~~q~q~~~Lr 336 (554)
T KOG4677|consen 258 LRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK-STASRKEFEETRVELPFSAEDSAHIQDQYTLLR 336 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc-chhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 33344455555555555555 444444444433222221111111 000111122334445555677777777777776
Q ss_pred HhHHHHHHHHHHHH
Q psy11582 553 QNKEEMQTLLAHIE 566 (1760)
Q Consensus 553 qek~el~~aL~~aE 566 (1760)
++..++....-.++
T Consensus 337 s~~~d~EAq~r~l~ 350 (554)
T KOG4677|consen 337 SQIIDIEAQDRHLE 350 (554)
T ss_pred HHHHHHHHHHHhHH
Confidence 66665554444333
No 400
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.53 E-value=1.2e+03 Score=27.05 Aligned_cols=96 Identities=16% Similarity=0.279 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 530 LREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQE 609 (1760)
Q Consensus 530 Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~e 609 (1760)
+-...+.--..|..+++.+-.|+.++.-++..++..+.....|..++.-.+...+.+ --.-.....
T Consensus 89 ~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~v--------------a~~Q~q~r~ 154 (192)
T PF11180_consen 89 IYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQV--------------AARQQQARQ 154 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 344445555667778888888888887777777777776666666666555444333 222233346
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 610 QLASLRSDKESLEAILFDTQSHLEQSDVKK 639 (1760)
Q Consensus 610 qla~LrseKesLEs~Lfe~Qq~l~qle~ek 639 (1760)
+...|..++......|..+|.++..|+...
T Consensus 155 ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 155 EAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666677777777777777777766666543
No 401
>TIGR03076 near_not_gcvH Chlamydial GcvH-like protein upstream region protein. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed so far only in the Chlamydiae, always as part of a two-gene operon, upstream of the homolog of GcvH. Its function is unknown.
Probab=23.53 E-value=74 Score=40.84 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=54.5
Q ss_pred HHHHHhhHHHHHhhHhHHHhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hh
Q psy11582 132 NTALRRLDDERRENEKLRKMNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYYS---SE 208 (1760)
Q Consensus 132 e~aL~rLEeEqqR~e~L~qvN~~LReQLeqa~~~N~aL~~dl~klt~dw~~~r~EL~~KE~~wr~ee~~f~~Y~~---~E 208 (1760)
-++|+++=.||+...-. -..-+|.+.=+.+....|.++. ...+--. .=+++||+||. -.
T Consensus 225 ~e~ll~fi~EQkk~v~m--------------ps~~EA~~Df~dkaq~af~~~s---k~~~~~l-s~~e~v~s~~~fmgv~ 286 (686)
T TIGR03076 225 VEALLRFIDEQKKNIAM--------------PSLKEAQQDFYDKAKQAFTKLS---KHAEFNL-TFDQFVSSYFSFMGVS 286 (686)
T ss_pred HHHHHHHHHHhcccccC--------------CcHHHHHHHHHHHHHHHHHHhc---cCCCcCc-CHHHHHHHHHHHhCCc
Confidence 46677788888877621 1123455555556666666551 1122111 33567777765 68
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhHhh
Q psy11582 209 HARLLALWRDVVDIKRSFTAMQSAT 233 (1760)
Q Consensus 209 h~rlL~LWRevv~~Rr~f~E~ksaT 233 (1760)
..+...+||+|.-+||.|..|-.+.
T Consensus 287 esef~~myReiLL~kRafl~legsV 311 (686)
T TIGR03076 287 ESEFFNMYREILLCKRALLALEGAV 311 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCce
Confidence 8899999999999999999887654
No 402
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.37 E-value=6.1e+02 Score=33.06 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy11582 996 QSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKF 1030 (1760)
Q Consensus 996 lE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~ 1030 (1760)
+-....+++.+++.+..++..+..+...|..+...
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333344444444444444444444444444433
No 403
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.27 E-value=1.9e+02 Score=30.47 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=44.9
Q ss_pred HhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhh
Q psy11582 1437 MLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERAS 1485 (1760)
Q Consensus 1437 l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae 1485 (1760)
-.++.+|..+..+...+..|..+++.+-..++.|+.+.++|...|.+.+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999999999999999999753
No 404
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.04 E-value=8.9e+02 Score=25.39 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=37.7
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy11582 474 LNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLK 542 (1760)
Q Consensus 474 Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~ 542 (1760)
|-.+|.+|+..+.-|.+-.-.-+.....+..++......+...+..++.|.=++..|-.....+.+.+.
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655555555555555555555555555555555555555444444444443
No 405
>PRK12704 phosphodiesterase; Provisional
Probab=22.99 E-value=1.9e+03 Score=29.18 Aligned_cols=11 Identities=9% Similarity=0.534 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy11582 1278 VRNLMQQVAQI 1288 (1760)
Q Consensus 1278 lr~l~q~l~~~ 1288 (1760)
+-.|+..+.++
T Consensus 438 ~e~~i~rl~~l 448 (520)
T PRK12704 438 LENYIKRLEKL 448 (520)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 406
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.88 E-value=7.2e+02 Score=24.28 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy11582 440 GREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKV 481 (1760)
Q Consensus 440 ~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekL 481 (1760)
...|..++..+.....+...|...+..|..+|..|....++|
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444555555555555555555555555555555443
No 407
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.65 E-value=2.5e+03 Score=30.45 Aligned_cols=62 Identities=8% Similarity=-0.095 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy11582 531 REDLLIANEDLKNAKL-AKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKY 593 (1760)
Q Consensus 531 r~EL~~lrE~L~~~~L-ere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km 593 (1760)
..++..+......... ....+..+.......+......+.+++..+...+ +...+.+....+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~r~~l 498 (1042)
T TIGR00618 436 QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET-RKKAVVLARLLE 498 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 3334444444444444 4444555555555555555555555555554333 333444443333
No 408
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.50 E-value=5.8e+02 Score=23.97 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 627 DTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDT 670 (1760)
Q Consensus 627 e~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~ 670 (1760)
.+..++..|..+..+|..++..+...+...+.|-.|.+..+++.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555566666666666666666666666666666654
No 409
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.47 E-value=1.2e+03 Score=26.82 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 396 THREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLN 475 (1760)
Q Consensus 396 stqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le 475 (1760)
+++..|..-..+++.++.+++..+.-++..+..+.........+..-.+.....+..|..-.......+..+..-+....
T Consensus 57 aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ 136 (188)
T PF05335_consen 57 AAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ 136 (188)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777777777777776555555555544444444444444444444444444444444444444444
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 476 SNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506 (1760)
Q Consensus 476 ~e~ekLk~~~~eLqrq~d~leeEk~el~~el 506 (1760)
.++..-..-+...++..+.+...+.....++
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~ 167 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADY 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433334444444444444443333333
No 410
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.41 E-value=7.1e+02 Score=24.04 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 590 ISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKK 639 (1760)
Q Consensus 590 L~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ek 639 (1760)
++.+......+..++..|..+.+.+..+...|-.....+...++.+-.++
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444445555555555555555555444444444444443333
No 411
>KOG2391|consensus
Probab=22.41 E-value=1.4e+03 Score=28.67 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 835 QDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREA 881 (1760)
Q Consensus 835 ~er~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~ 881 (1760)
.+++.+....++|+.-..+|+.....++.+...++..++-|..-..+
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33455555666666666666666666666666666666555555444
No 412
>PRK04406 hypothetical protein; Provisional
Probab=22.40 E-value=4.4e+02 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHH
Q psy11582 550 LLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMN 587 (1760)
Q Consensus 550 ~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lr 587 (1760)
.+++.+..+...++..+..+.+|...+.+...+.+.++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444444444443
No 413
>PRK00736 hypothetical protein; Provisional
Probab=22.22 E-value=3.9e+02 Score=25.69 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 1560 DLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQT 1610 (1760)
Q Consensus 1560 ~l~~r~q~Lq~~l~d~e~~l~q~~~~e~~~~~~~~~lq~e~~~l~~rl~~~ 1610 (1760)
++.+||-.|+..++-.+.+|..-...-..-++.+..|+.....|.+|+..+
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777776665555555555555666666666666665543
No 414
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.20 E-value=6e+02 Score=27.58 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 446 LVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506 (1760)
Q Consensus 446 l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el 506 (1760)
|+.....++++++..+..+.+++..|..|+-+.-.++..+.+|-+.+..++-.+..--...
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444889999999999999999999999999999999999999988887765554444
No 415
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.98 E-value=2.5e+02 Score=27.10 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcch-HhhhhchhHhhHhHhhhhhhHHHHH
Q psy11582 1356 DQKNEELQHLREKVLTLELTLSNVS-EEKSQGDDKLMKCRESGARLDAEKR 1405 (1760)
Q Consensus 1356 ~~~~~E~~~~~~ki~~le~~~~~~e-~e~r~l~e~l~klra~~~~l~~e~r 1405 (1760)
+..+.....+.+-|-++|..+++.- .++..++.+|...++.+.++..+.+
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444455556666666665 6777888888888888888876654
No 416
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=21.71 E-value=1.6e+03 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11582 465 REINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQ 503 (1760)
Q Consensus 465 ~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~ 503 (1760)
..+...+..+...+...+..+.+++++++.++..+..+.
T Consensus 70 ~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 70 TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555444333
No 417
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.45 E-value=2.3e+03 Score=29.64 Aligned_cols=32 Identities=3% Similarity=0.078 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 169 LTNDLEKLTTDWTHLREEMAMKEKDWIEEEQY 200 (1760)
Q Consensus 169 L~~dl~klt~dw~~~r~EL~~KE~~wr~ee~~ 200 (1760)
+..+|.+|..-+..++.++-.+=+.|+.=.-+
T Consensus 124 ~~~ei~~Le~k~~~~~~~iy~~LT~werV~~a 155 (762)
T PLN03229 124 FSDQIISLESKYQQALKDLYTHLTPIQRVNIA 155 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66777777766666655555555555544433
No 418
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.32 E-value=1.1e+03 Score=25.91 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11582 453 LRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNE 505 (1760)
Q Consensus 453 L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~e 505 (1760)
++.......+.+..|+.++...+..+++-...+.+|+........+..+....
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333444444444444444444444444444444444444444444333
No 419
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.26 E-value=5.2e+02 Score=29.33 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhHHHHHHHHhhcc
Q psy11582 789 DKQQALLIAQQDQKAI-----------QDRLSQVLKELEEEKCTLDRIKRESAGRS 833 (1760)
Q Consensus 789 ekqQaL~~~e~Ek~~L-----------~ekL~~~q~eL~~a~~eler~rrea~~~~ 833 (1760)
+-|..-...-++|+.+ ..++..+-+++......++..+..+..-.
T Consensus 90 ~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~ 145 (192)
T PF05529_consen 90 EDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESAS 145 (192)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445567777654 78999999999999888888888875443
No 420
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.22 E-value=1.9e+03 Score=28.56 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q psy11582 541 LKNAKLAKELLEQNKEEMQTLLA 563 (1760)
Q Consensus 541 L~~~~Lere~Leqek~el~~aL~ 563 (1760)
+..+..+.+..+........+|.
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~ 266 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELL 266 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 421
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=21.12 E-value=1.1e+03 Score=28.12 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 869 ERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLL 929 (1760)
Q Consensus 869 eeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~ 929 (1760)
..++.-++..++.+.-+.-+++-.-.+..+-.++.-.+..++++++..++.+++.++.++.
T Consensus 185 ~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 185 EQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445666666666665566665555666777777777777788887777777777766653
No 422
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=21.04 E-value=7.2e+02 Score=27.03 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy11582 626 FDTQSHLEQSDVKKEQLEHEVQELLVKQESLK-GQVVRLNKELEDTEKRAQETKASLVQQASGLD 689 (1760)
Q Consensus 626 fe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq-~el~rL~~ele~~~~~~~~~~~~l~~ql~q~E 689 (1760)
.+++..+.+++.++.+|+-+.+.+........ ..+..++..++.+..+....+..+..++.|.+
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677778888888877777766654332 56777778888888888887888777776654
No 423
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.85 E-value=4.1e+02 Score=25.53 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH
Q psy11582 855 EELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQ 904 (1760)
Q Consensus 855 eea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr 904 (1760)
++-+..++..+.-++..++.|+..+.....+|..++.++..+.+++..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555556666666666666666666666666665555555443
No 424
>PRK02119 hypothetical protein; Provisional
Probab=20.79 E-value=4.8e+02 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHH
Q psy11582 551 LEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDM 586 (1760)
Q Consensus 551 Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~l 586 (1760)
++..+..+...++..+..+.+|...+.+...+.+.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333
No 425
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=20.70 E-value=1.1e+03 Score=25.65 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11582 503 QNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNK 555 (1760)
Q Consensus 503 ~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek 555 (1760)
..+..++.+++.-.+..+...+.....+-++|..++..|..+...+..-+..+
T Consensus 76 qlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk 128 (136)
T PF11570_consen 76 QLKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKK 128 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 34555566777777777777777777777777777777777776666554443
No 426
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.61 E-value=9.3e+02 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 398 REQLHTMKKQYESADESQYNMSQQVTS 424 (1760)
Q Consensus 398 qe~L~rLrdqL~EvE~e~r~Le~Qaqk 424 (1760)
...+..++.++..+-.++..|+.+...
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 427
>KOG2077|consensus
Probab=20.60 E-value=2.1e+03 Score=28.87 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 839 TINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSE 878 (1760)
Q Consensus 839 ~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E 878 (1760)
.++.-.+.|--...+|=++++.+.--.+.|-.++++|..+
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E 337 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCE 337 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccH
Confidence 3444444455555555555555544444444444443333
No 428
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.41 E-value=8.7e+02 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11582 636 DVKKEQLEHEVQELLVKQ 653 (1760)
Q Consensus 636 e~ekeqLE~E~q~l~~~~ 653 (1760)
+.+.+.............
T Consensus 72 ~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 72 EQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 429
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.14 E-value=2.4e+02 Score=25.08 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=33.9
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy11582 1051 VEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYE 1091 (1760)
Q Consensus 1051 l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~lr~kl~ 1091 (1760)
++.+...|+..-..|.+..+.|...++.+..||..+..++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888888888888888888888888888888888876653
Done!