Query psy11582
Match_columns 1760
No_of_seqs 260 out of 298
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:13:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.2 4.7E-07 1.6E-11 101.9 44.6 41 395-435 9-49 (284)
2 1i84_S Smooth muscle myosin he 98.7 1.6E-08 5.5E-13 138.4 11.2 56 392-447 864-919 (1184)
3 1i84_S Smooth muscle myosin he 98.6 4.2E-08 1.4E-12 134.3 11.1 61 1560-1620 1113-1173(1184)
4 3na7_A HP0958; flagellar bioge 97.1 0.053 1.8E-06 62.2 23.3 137 546-682 32-170 (256)
5 2v71_A Nuclear distribution pr 96.9 0.18 6.2E-06 55.1 23.6 166 473-669 14-179 (189)
6 3o0z_A RHO-associated protein 96.7 0.22 7.6E-06 53.2 21.9 25 403-427 10-34 (168)
7 3na7_A HP0958; flagellar bioge 96.6 0.22 7.6E-06 57.1 23.6 32 512-543 91-122 (256)
8 3o0z_A RHO-associated protein 96.5 0.37 1.3E-05 51.5 22.1 135 523-657 4-138 (168)
9 2v71_A Nuclear distribution pr 96.1 0.76 2.6E-05 50.2 22.6 155 525-683 17-175 (189)
10 3vkg_A Dynein heavy chain, cyt 95.6 2.4 8.1E-05 63.4 31.3 79 581-659 2021-2106(3245)
11 2efr_A General control protein 95.4 3.5 0.00012 43.8 24.8 57 559-615 97-153 (155)
12 3vkg_A Dynein heavy chain, cyt 93.9 11 0.00036 56.8 30.5 60 562-621 2030-2089(3245)
13 2efr_A General control protein 93.9 7.9 0.00027 41.2 24.8 125 449-580 29-153 (155)
14 2dfs_A Myosin-5A; myosin-V, in 93.7 1.2 4E-05 60.8 19.0 62 561-625 985-1046(1080)
15 2ocy_A RAB guanine nucleotide 93.6 5.6 0.00019 42.2 19.9 121 519-664 14-142 (154)
16 3q8t_A Beclin-1; autophagy, AT 93.0 1.4 4.6E-05 43.4 13.3 90 986-1088 6-95 (96)
17 2dfs_A Myosin-5A; myosin-V, in 92.4 3 0.0001 56.9 20.1 38 568-605 978-1015(1080)
18 2ocy_A RAB guanine nucleotide 91.3 17 0.00057 38.6 19.9 87 392-478 6-95 (154)
19 2fxo_A Myosin heavy chain, car 91.1 14 0.00047 38.0 19.0 58 917-974 67-124 (129)
20 2fxo_A Myosin heavy chain, car 91.0 14 0.00046 38.1 18.8 9 523-531 67-75 (129)
21 4gkw_A Spindle assembly abnorm 90.2 18 0.0006 36.9 21.6 42 639-680 100-141 (167)
22 3ol1_A Vimentin; structural ge 88.5 13 0.00045 37.8 16.0 84 398-502 19-102 (119)
23 3u1c_A Tropomyosin alpha-1 cha 87.5 16 0.00055 36.1 15.5 67 865-931 4-70 (101)
24 3oja_B Anopheles plasmodium-re 85.6 6.8 0.00023 49.5 15.0 29 594-622 550-578 (597)
25 3u1c_A Tropomyosin alpha-1 cha 85.4 14 0.00048 36.5 13.8 88 1286-1373 12-99 (101)
26 3u59_A Tropomyosin beta chain; 84.0 16 0.00054 36.0 13.5 88 1286-1373 12-99 (101)
27 3u59_A Tropomyosin beta chain; 83.4 28 0.00095 34.3 15.0 63 865-927 4-66 (101)
28 2eqb_B RAB guanine nucleotide 83.3 24 0.00081 34.7 13.9 62 572-633 10-71 (97)
29 2jee_A YIIU; FTSZ, septum, coi 83.2 11 0.00036 36.0 11.1 70 458-527 9-78 (81)
30 3oja_A Leucine-rich immune mol 81.2 21 0.00072 44.0 16.6 114 445-558 357-482 (487)
31 3q8t_A Beclin-1; autophagy, AT 81.0 36 0.0012 33.4 14.5 74 433-506 10-83 (96)
32 3ol1_A Vimentin; structural ge 81.0 31 0.0011 35.0 14.7 47 1051-1097 67-113 (119)
33 2e7s_A RAB guanine nucleotide 80.2 3 0.0001 43.2 6.8 94 425-518 30-124 (135)
34 2no2_A HIP-I, huntingtin-inter 80.1 47 0.0016 33.2 15.2 98 523-623 6-103 (107)
35 3swk_A Vimentin; cytoskeleton, 80.1 19 0.00064 34.6 11.9 43 460-502 40-82 (86)
36 2v4h_A NF-kappa-B essential mo 79.9 19 0.00064 36.0 12.0 75 392-470 31-105 (110)
37 3swk_A Vimentin; cytoskeleton, 79.1 14 0.00049 35.4 10.8 69 1006-1087 15-83 (86)
38 3a7p_A Autophagy protein 16; c 78.2 21 0.00073 37.6 12.5 75 584-658 64-138 (152)
39 3tnu_B Keratin, type II cytosk 78.2 29 0.001 35.5 13.7 71 464-551 38-108 (129)
40 4gkw_A Spindle assembly abnorm 77.6 66 0.0023 32.8 23.2 55 551-605 103-157 (167)
41 2eqb_B RAB guanine nucleotide 77.3 44 0.0015 32.8 13.6 57 533-589 6-62 (97)
42 2e7s_A RAB guanine nucleotide 76.9 9.2 0.00032 39.6 9.3 113 1427-1552 5-120 (135)
43 2v66_B Nuclear distribution pr 76.6 67 0.0023 32.3 15.6 62 438-502 14-75 (111)
44 2b9c_A Striated-muscle alpha t 75.1 42 0.0014 35.3 14.0 84 392-475 17-100 (147)
45 3tnu_A Keratin, type I cytoske 74.4 32 0.0011 35.3 12.8 34 464-497 40-73 (131)
46 3s4r_A Vimentin; alpha-helix, 72.7 66 0.0023 31.3 13.7 82 399-482 9-90 (93)
47 2v66_B Nuclear distribution pr 72.6 84 0.0029 31.6 17.0 100 517-640 2-101 (111)
48 3mq7_A Bone marrow stromal ant 72.2 83 0.0028 31.7 14.2 11 381-391 6-16 (121)
49 3hnw_A Uncharacterized protein 72.0 58 0.002 33.9 14.0 66 441-506 68-133 (138)
50 3hnw_A Uncharacterized protein 71.6 25 0.00086 36.6 11.2 67 602-668 68-134 (138)
51 3bas_A Myosin heavy chain, str 69.4 55 0.0019 31.5 12.3 48 606-653 39-86 (89)
52 1x79_B RAB GTPase binding effe 69.1 89 0.0031 31.5 13.9 72 454-528 37-108 (112)
53 3tnu_B Keratin, type II cytosk 67.9 72 0.0025 32.6 13.6 36 432-467 34-69 (129)
54 3cvf_A Homer-3, homer protein 67.6 6.9 0.00024 37.1 5.3 53 1108-1160 5-57 (79)
55 1ic2_A Tropomyosin alpha chain 67.1 33 0.0011 32.4 10.0 68 1283-1350 6-73 (81)
56 1ic2_A Tropomyosin alpha chain 66.5 67 0.0023 30.3 12.0 68 608-675 5-72 (81)
57 3tnu_A Keratin, type I cytoske 66.5 72 0.0025 32.7 13.3 29 522-550 81-109 (131)
58 3ghg_A Fibrinogen alpha chain; 66.0 99 0.0034 38.4 16.1 49 1051-1099 115-163 (562)
59 2b9c_A Striated-muscle alpha t 65.0 83 0.0028 33.1 13.5 79 466-551 49-127 (147)
60 3mq7_A Bone marrow stromal ant 64.4 75 0.0026 32.0 12.1 81 410-490 22-106 (121)
61 3s4r_A Vimentin; alpha-helix, 64.4 78 0.0027 30.8 12.3 80 584-665 12-91 (93)
62 1f5n_A Interferon-induced guan 61.1 74 0.0025 40.7 14.8 78 683-778 504-582 (592)
63 3cve_A Homer protein homolog 1 60.6 18 0.00063 33.7 6.6 50 1111-1160 2-51 (72)
64 4f61_I Stathmin-like domain R4 60.0 1.9E+02 0.0067 32.6 15.9 15 1465-1479 210-224 (240)
65 2w83_C C-JUN-amino-terminal ki 59.7 62 0.0021 30.4 9.8 69 439-507 7-75 (77)
66 3cvf_A Homer-3, homer protein 58.6 21 0.00073 33.8 6.8 67 1452-1518 7-73 (79)
67 2jee_A YIIU; FTSZ, septum, coi 58.2 1.3E+02 0.0044 28.7 12.3 40 594-633 26-65 (81)
68 1d7m_A Cortexillin I; coiled-c 58.2 1.3E+02 0.0046 28.8 14.6 57 530-586 2-58 (101)
69 1deq_A Fibrinogen (alpha chain 57.9 1.4E+02 0.005 35.7 15.1 35 404-441 54-88 (390)
70 4h22_A Leucine-rich repeat fli 55.1 77 0.0026 31.4 10.2 72 429-500 11-82 (103)
71 3cve_A Homer protein homolog 1 53.3 44 0.0015 31.2 7.8 63 1455-1517 4-66 (72)
72 2v4h_A NF-kappa-B essential mo 53.3 1.9E+02 0.0064 29.0 12.9 32 400-431 25-56 (110)
73 1deq_A Fibrinogen (alpha chain 52.9 3.2E+02 0.011 32.8 16.9 16 839-854 68-83 (390)
74 3nmd_A CGMP dependent protein 52.2 17 0.00057 33.9 4.9 48 1348-1395 21-68 (72)
75 2yy0_A C-MYC-binding protein; 48.7 20 0.00068 31.5 4.6 36 1647-1682 15-50 (53)
76 3i00_A HIP-I, huntingtin-inter 48.2 1.1E+02 0.0037 31.2 10.6 70 517-586 39-118 (120)
77 3oja_A Leucine-rich immune mol 47.6 3.9E+02 0.013 32.6 18.0 33 861-893 365-397 (487)
78 2i1j_A Moesin; FERM, coiled-co 47.1 20 0.0007 45.6 6.4 69 408-476 330-398 (575)
79 3ghg_A Fibrinogen alpha chain; 46.6 1.8E+02 0.0063 36.2 14.0 49 924-975 115-163 (562)
80 1wt6_A Myotonin-protein kinase 44.8 1.1E+02 0.0037 29.1 9.1 47 1516-1569 12-58 (81)
81 2i1j_A Moesin; FERM, coiled-co 43.8 43 0.0015 42.6 8.6 57 522-578 339-395 (575)
82 3jsv_C NF-kappa-B essential mo 43.6 1.9E+02 0.0065 28.3 10.8 21 464-484 42-62 (94)
83 3mq9_A Bone marrow stromal ant 43.0 3.5E+02 0.012 32.9 16.5 27 637-663 443-469 (471)
84 1go4_E MAD1 (mitotic arrest de 42.5 50 0.0017 32.6 6.8 80 1526-1612 3-96 (100)
85 3ghg_B Fibrinogen beta chain; 41.5 1.6E+02 0.0054 36.3 12.5 96 392-487 88-188 (461)
86 3qh9_A Liprin-beta-2; coiled-c 41.3 1.4E+02 0.0049 28.3 9.3 51 1319-1369 27-77 (81)
87 2no2_A HIP-I, huntingtin-inter 41.2 2.8E+02 0.0096 27.6 14.7 35 392-426 8-42 (107)
88 1f5n_A Interferon-induced guan 40.2 2.9E+02 0.01 35.2 15.4 30 709-738 553-582 (592)
89 3jsv_C NF-kappa-B essential mo 39.9 2E+02 0.0067 28.1 10.3 24 404-427 7-30 (94)
90 3iv1_A Tumor susceptibility ge 39.3 2.4E+02 0.0082 26.7 10.5 46 837-882 27-72 (78)
91 2xnx_M M protein, M1-BC1; cell 38.3 50 0.0017 34.5 6.4 78 549-626 62-139 (146)
92 3qh9_A Liprin-beta-2; coiled-c 37.1 72 0.0025 30.2 6.6 73 1377-1453 5-77 (81)
93 3s9g_A Protein hexim1; cyclin 35.9 2.5E+02 0.0086 27.5 10.2 60 438-497 34-93 (104)
94 3i00_A HIP-I, huntingtin-inter 35.7 2.4E+02 0.0081 28.7 10.8 26 463-488 93-118 (120)
95 3nmd_A CGMP dependent protein 35.3 56 0.0019 30.4 5.5 49 1430-1478 19-67 (72)
96 1x79_B RAB GTPase binding effe 35.1 3.7E+02 0.012 27.1 13.3 19 681-699 64-82 (112)
97 4h22_A Leucine-rich repeat fli 34.2 2.4E+02 0.0083 27.9 10.1 67 563-629 12-78 (103)
98 1l8d_A DNA double-strand break 33.5 3.5E+02 0.012 26.4 13.1 30 466-495 68-97 (112)
99 2w83_C C-JUN-amino-terminal ki 32.7 3.2E+02 0.011 25.7 10.1 65 435-499 10-74 (77)
100 2xdj_A Uncharacterized protein 32.4 3.1E+02 0.011 26.2 10.4 46 462-507 20-65 (83)
101 3trt_A Vimentin; cytoskeleton, 32.0 3E+02 0.01 25.3 10.7 25 844-868 8-32 (77)
102 2xdj_A Uncharacterized protein 31.0 3.3E+02 0.011 25.9 10.3 46 623-668 20-65 (83)
103 3a7p_A Autophagy protein 16; c 30.9 4.8E+02 0.016 27.6 12.3 27 475-501 102-128 (152)
104 3mq9_A Bone marrow stromal ant 29.7 4.9E+02 0.017 31.6 14.7 10 211-220 204-213 (471)
105 3efg_A Protein SLYX homolog; x 29.5 1.3E+02 0.0044 28.4 7.1 57 1555-1611 6-62 (78)
106 1ik9_A DNA repair protein XRCC 28.8 6.4E+02 0.022 28.0 13.9 66 839-904 122-192 (213)
107 1go4_E MAD1 (mitotic arrest de 28.4 2.1E+02 0.007 28.4 8.6 33 532-564 12-44 (100)
108 1gd2_E Transcription factor PA 28.3 83 0.0028 29.2 5.5 34 125-161 28-61 (70)
109 3iv1_A Tumor susceptibility ge 26.7 3.5E+02 0.012 25.6 9.4 37 445-481 22-58 (78)
110 3vem_A Helicase protein MOM1; 26.4 3.3E+02 0.011 27.4 9.7 47 722-768 38-84 (115)
111 4fla_A Regulation of nuclear P 25.6 3.9E+02 0.013 28.2 10.8 78 1079-1156 66-147 (152)
112 1gk4_A Vimentin; intermediate 24.7 4.5E+02 0.015 24.8 10.8 79 547-625 2-84 (84)
113 3cl3_D NF-kappa-B essential mo 23.8 1.9E+02 0.0065 29.6 7.5 113 794-919 18-130 (130)
114 3ghg_C Fibrinogen gamma chain; 23.1 4.9E+02 0.017 31.7 12.4 102 222-323 25-137 (411)
115 3vmx_A Voltage-gated hydrogen 22.5 1.6E+02 0.0056 25.3 5.7 40 1443-1482 3-42 (48)
116 3kbt_A Beta-I spectrin, spectr 22.3 8.8E+02 0.03 27.4 28.4 99 1270-1376 35-133 (326)
117 3l4q_C Phosphatidylinositol 3- 22.2 7.6E+02 0.026 26.6 17.9 17 522-538 128-144 (170)
118 2yy0_A C-MYC-binding protein; 20.2 1.3E+02 0.0044 26.4 4.8 31 476-506 19-49 (53)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.19 E-value=4.7e-07 Score=101.87 Aligned_cols=41 Identities=7% Similarity=0.095 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 395 ATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQ 435 (1760)
Q Consensus 395 estqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~ 435 (1760)
.+.+..+..+...+.+++..+..+...+..+...+..+...
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 49 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKK 49 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.74 E-value=1.6e-08 Score=138.43 Aligned_cols=56 Identities=11% Similarity=0.218 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALV 447 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~ 447 (1760)
.+|...+..+..+.+.+.+++..+..|+.++..+..++......+.++..++..+.
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~ 919 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666655555544444444444444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.64 E-value=4.2e-08 Score=134.29 Aligned_cols=61 Identities=30% Similarity=0.354 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Q psy11582 1560 DLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQNEL 1620 (1760)
Q Consensus 1560 ~l~~r~q~Lq~~l~d~e~~l~q~~~~e~~~~~~~~~lq~e~~~l~~rl~~~~~~~~~~~~l 1620 (1760)
.+...+..|+.++.++.+.+.........+..+...++.++..|+.+|..+......+.+|
T Consensus 1113 ~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn~aq~el 1173 (1184)
T 1i84_S 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173 (1184)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333344444444444333322222233333444566666666666666655544444443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.08 E-value=0.053 Score=62.21 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=79.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHH
Q psy11582 546 LAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEA--NDKELQRLQEQLASLRSDKESLEA 623 (1760)
Q Consensus 546 Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~a--lEre~~~L~eqla~LrseKesLEs 623 (1760)
.+++.++.++.++...+..+...+.+++..+.++..+.++++..+.+...++.+ ..+++..+..++..+...+..++.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444555555555555555555555555444433 456677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 624 ILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLV 682 (1760)
Q Consensus 624 ~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~l~ 682 (1760)
.+.++...+..+......++..+..+.......+.++.....+++.+...+...+..+.
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~ 170 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLV 170 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666666666666666666666666555555555555555555443
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.86 E-value=0.18 Score=55.07 Aligned_cols=166 Identities=15% Similarity=0.123 Sum_probs=88.6
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 473 SLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLE 552 (1760)
Q Consensus 473 ~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Le 552 (1760)
-....+...+..+.+++..++..+..=.+++.++ ..+++..++++..|..++.+|..|+...|.++..+..+...
T Consensus 14 ywk~~~~~~~q~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~-- 88 (189)
T 2v71_A 14 YWKELSMKYKQSFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK-- 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3333444445555555555555555555555554 45666678888888888888888888888777655443222
Q ss_pred HhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11582 553 QNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHL 632 (1760)
Q Consensus 553 qek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l 632 (1760)
.+..|..++..++.....++.-+-.+.+....+++... ...+-.+.+++.|..+-..+
T Consensus 89 ---------------~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R-------~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 89 ---------------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR-------ATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHhhHHHHHHHHHHHHHHH
Confidence 24444445555555555554444444555555555444 44555577777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 633 EQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELED 669 (1760)
Q Consensus 633 ~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~ 669 (1760)
+-++.++.. ...+...++.|+-++..|+.++.+
T Consensus 147 alLE~El~E----Ke~l~~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 147 AFLESELDE----KESLLVSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp HHHHHHHHH----HHHHHCCC----------------
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777662 334455555556666666555544
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.67 E-value=0.22 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 403 TMKKQYESADESQYNMSQQVTSLTS 427 (1760)
Q Consensus 403 rLrdqL~EvE~e~r~Le~QaqkLk~ 427 (1760)
.|.+|+.++..-+++--.-+.+++.
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK 34 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRK 34 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444333333333
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.62 E-value=0.22 Score=57.08 Aligned_cols=32 Identities=6% Similarity=0.183 Sum_probs=12.9
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 512 DMDAREVELRGKEDMNRRLREDLLIANEDLKN 543 (1760)
Q Consensus 512 E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~ 543 (1760)
+.+.++..|.+++.+.+.+.+++..+-+.+..
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333333
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.47 E-value=0.37 Score=51.52 Aligned_cols=135 Identities=15% Similarity=0.215 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 523 KEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDK 602 (1760)
Q Consensus 523 LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEr 602 (1760)
..+|+..|...|..+.++|..-...-..+.....++..+++.+|....+|...+..+....+.+...+..|+.++..--+
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 603 ELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLK 657 (1760)
Q Consensus 603 e~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq 657 (1760)
.....++-++++..-+.+|...+..+............+|-..+..+.....++.
T Consensus 84 ~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 84 DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888888888888877777777777777776666666666666655555
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.12 E-value=0.76 Score=50.23 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH----HHHH
Q psy11582 525 DMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEIT----IEAN 600 (1760)
Q Consensus 525 ek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~----l~al 600 (1760)
.....++..+..++..|+...-.--.|+. ++...|..+++.+.+|...+.++..++...++.+.....+ +..+
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~L 93 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVL 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433 3566777888888888888888888888888888777555 6666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 601 DKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKAS 680 (1760)
Q Consensus 601 Ere~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~ 680 (1760)
++++..+......+...+-.||..-.++........+..+.++..+..+.-.+.=+..++.. +..+.....++..+.-.
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 77776666666666666667777777777777777777777777777777777767777664 44444445555555555
Q ss_pred HHH
Q psy11582 681 LVQ 683 (1760)
Q Consensus 681 l~~ 683 (1760)
|.+
T Consensus 173 Lk~ 175 (189)
T 2v71_A 173 LRQ 175 (189)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.65 E-value=2.4 Score=63.38 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 581 LDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQS-------HLEQSDVKKEQLEHEVQELLVKQ 653 (1760)
Q Consensus 581 sE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq-------~l~qle~ekeqLE~E~q~l~~~~ 653 (1760)
.+.+..+..|...+..+..++.++..+..+.+..-.+|+.|+.....++. .+..|..++......+..+....
T Consensus 2021 ~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2021 NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444444444 44444444444444444444444
Q ss_pred HHHHHH
Q psy11582 654 ESLKGQ 659 (1760)
Q Consensus 654 E~Lq~e 659 (1760)
..+-|.
T Consensus 2101 ~~L~GD 2106 (3245)
T 3vkg_A 2101 STVVGD 2106 (3245)
T ss_dssp HHHHHH
T ss_pred HhccHH
Confidence 444443
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.37 E-value=3.5 Score=43.80 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 559 QTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLR 615 (1760)
Q Consensus 559 ~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~Lr 615 (1760)
...+.+++..+.+|+..+..-+..+..+.+.|+.....+..+.-.+..|.++++.+.
T Consensus 97 ERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 97 ERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 444555556666666666666666666666666666666666666666666665543
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.90 E-value=11 Score=56.77 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy11582 562 LAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESL 621 (1760)
Q Consensus 562 L~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesL 621 (1760)
|..++..+++++..+..++.+++....+-..+..+++.+++++.....=+.+|..|+..=
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 333333333333333333333333333333334444444444444444444444444433
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.89 E-value=7.9 Score=41.16 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHH
Q psy11582 449 NIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNR 528 (1760)
Q Consensus 449 ~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S 528 (1760)
.++....-....+..+.+|..++......+-.|...-......-+.+++++..+...+.-+....+...+.+..|+....
T Consensus 29 dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id 108 (155)
T 2efr_A 29 LLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 108 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444455555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy11582 529 RLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL 580 (1760)
Q Consensus 529 ~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLr 580 (1760)
.+-.+|...++++..+.-+.+.+-.+..++ ......|+.++++++
T Consensus 109 ~lEd~L~~~Kek~~~i~~eLd~tl~el~~~-------~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 109 DLEDELYAQKLKYKAISEEMKQLEDKVEEL-------LSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHhh
Confidence 666666666666666666666554443333 444555555555543
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.65 E-value=1.2 Score=60.81 Aligned_cols=62 Identities=18% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11582 561 LLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAIL 625 (1760)
Q Consensus 561 aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~L 625 (1760)
.+..++..+++++.++.++..+...+.....++.. .++.++..|.++.+.|+.+++.|+..+
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333332 333444444555555555555555433
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.60 E-value=5.6 Score=42.16 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=71.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 519 ELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIE 598 (1760)
Q Consensus 519 ~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~ 598 (1760)
+.-.|++..+..+.+|...+..+..+...++.+. .+..+.......+.++...+.
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~-------------------------~l~~~~~~~~~e~~~L~~~l~ 68 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYN-------------------------TLKRELSDRDDEVKRLREDIA 68 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-------------------------HHHTHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHhhhhHHHHHHHHHHH
Confidence 3456777777777777776666555544333221 112223345555555666666
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 599 ANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQ--------SDVKKEQLEHEVQELLVKQESLKGQVVRLN 664 (1760)
Q Consensus 599 alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~q--------le~ekeqLE~E~q~l~~~~E~Lq~el~rL~ 664 (1760)
.-.......+.....+..+.+.|-.+||+=-+.+.. ++.+-.+|+....+....++.++.++..|+
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777788888888999999999985443322 233344444555555555555555555443
No 16
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=93.02 E-value=1.4 Score=43.38 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhH
Q psy11582 986 KQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDL 1065 (1760)
Q Consensus 986 ~aeLrnqLrelE~e~~elr~eLqeLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el 1065 (1760)
+..+...+..+...-..+-.++..++.+...+..++..+......++.+.+. ...+.+..+....++
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~-------------~w~eyn~~~~ql~e~ 72 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ-------------YQREYSEFKRQQLEL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH-------------HHHHHHHHHHHHHHH
Confidence 3456666777777777788888888888888889999999888887777777 788999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHH
Q psy11582 1066 SHQLSLLQRKKENVVEDLARLKQ 1088 (1760)
Q Consensus 1066 ~~~l~~l~r~~~~~~~EL~~lr~ 1088 (1760)
...+.+|.++..-....|.+|++
T Consensus 73 ~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 73 DDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999988888888888888875
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.37 E-value=3 Score=56.88 Aligned_cols=38 Identities=3% Similarity=0.060 Sum_probs=18.0
Q ss_pred hHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 568 SKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ 605 (1760)
Q Consensus 568 slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~ 605 (1760)
.+..++..+..+..+.+.++..+.+...+...++....
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~ 1015 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555554444444444443
No 18
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.33 E-value=17 Score=38.61 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=57.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTS---LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREIN 468 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~Qaqk---Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~ 468 (1760)
.||=.+=+.-+.|.|.|.....++..+...+.. ++.+++.+...+.....++..+...+..-..-....+..+..+.
T Consensus 6 tKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie 85 (154)
T 2ocy_A 6 TQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777777777777666555544 56666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhH
Q psy11582 469 EMVESLNSNL 478 (1760)
Q Consensus 469 ~eve~Le~e~ 478 (1760)
.+++.|...+
T Consensus 86 ~ElEeLTasL 95 (154)
T 2ocy_A 86 KEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.15 E-value=14 Score=38.02 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 917 AENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGL 974 (1760)
Q Consensus 917 lee~~e~LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~ 974 (1760)
.++....+...-.++...+.++...++.....+..+...-++++.++..+...+++..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444445555555555555555555555554443
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.04 E-value=14 Score=38.07 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy11582 523 KEDMNRRLR 531 (1760)
Q Consensus 523 LEek~S~Lr 531 (1760)
.++++.+|.
T Consensus 67 ~EE~~~~L~ 75 (129)
T 2fxo_A 67 AEERCDQLI 75 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 21
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.19 E-value=18 Score=36.88 Aligned_cols=42 Identities=33% Similarity=0.328 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 639 KEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKAS 680 (1760)
Q Consensus 639 keqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~~~~~~ 680 (1760)
+-.||..+.+.-.-++++.+-|.-|++++|.+.-+++...++
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdS 141 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDS 141 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888889999999999999999998888877666
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.46 E-value=13 Score=37.76 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 398 REQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSN 477 (1760)
Q Consensus 398 qe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e 477 (1760)
...|..++.+++.+..+.-.|.-++..++...+.+...+++-....... ...+..+..+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~---------------------E~di~~lrK~ 77 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA---------------------ENTLQSFRQD 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------------------HHHHHHhhhc
Confidence 3457777888877777777777666666666666655554433333333 3344444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 478 LDKVQKNNSRLSKINESLQSEKLFL 502 (1760)
Q Consensus 478 ~ekLk~~~~eLqrq~d~leeEk~el 502 (1760)
++..-..-.+|+.+++.+.+++.++
T Consensus 78 lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 78 VDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555444
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.46 E-value=16 Score=36.06 Aligned_cols=67 Identities=13% Similarity=0.346 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 865 KAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDT 931 (1760)
Q Consensus 865 l~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkEL~el 931 (1760)
++.+...+..+..+.+.+...++.++..+...+++......++..+++++..++..++.....+...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777777776677777666666666666666666555444444443
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.58 E-value=6.8 Score=49.53 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLE 622 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLE 622 (1760)
...++...+....+.++.+.++.++..|+
T Consensus 550 e~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 550 EKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444443333333
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.37 E-value=14 Score=36.49 Aligned_cols=88 Identities=10% Similarity=0.217 Sum_probs=75.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHH
Q psy11582 1286 AQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHL 1365 (1760)
Q Consensus 1286 ~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~ 1365 (1760)
.-+.-+.|++-+.+..+..++.+.+....+.+.-|..|++.+..++++--.+..+|..++..|..=+...-..+.+.-+|
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566889999999999999999999999999999999999999999999999999999988887777777777777777
Q ss_pred HHHHHHHH
Q psy11582 1366 REKVLTLE 1373 (1760)
Q Consensus 1366 ~~ki~~le 1373 (1760)
.-+|.-||
T Consensus 92 ~RriqllE 99 (101)
T 3u1c_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77776665
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.97 E-value=16 Score=36.05 Aligned_cols=88 Identities=9% Similarity=0.190 Sum_probs=77.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHH
Q psy11582 1286 AQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHL 1365 (1760)
Q Consensus 1286 ~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~ 1365 (1760)
.-+.-+.|++-+.+..+..++.+++....+.+..+..|++.+..++++--.+..+|..++..|..-+......+.|.-+|
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHH
Q psy11582 1366 REKVLTLE 1373 (1760)
Q Consensus 1366 ~~ki~~le 1373 (1760)
.-+|--||
T Consensus 92 nRriqllE 99 (101)
T 3u59_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77776665
No 27
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.36 E-value=28 Score=34.28 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 865 KAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKD 927 (1760)
Q Consensus 865 l~~LeeqleeLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee~~e~LrkE 927 (1760)
++.+...+..+..+.+.+...++.++..+...+++......++..+++.+..++...+.....
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~ 66 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSES 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777777777777777776666666666666666666666555554433333
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.25 E-value=24 Score=34.67 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11582 572 VEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLE 633 (1760)
Q Consensus 572 LE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~ 633 (1760)
+...+..+..+..+....+.++...+..-.......+.....+..+.+.|..+||+=-+.+.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MV 71 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMV 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555556666666666777777788888888999999998554443
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.19 E-value=11 Score=35.95 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHH
Q psy11582 458 SALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMN 527 (1760)
Q Consensus 458 ~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~ 527 (1760)
+.|+..++.+-..|..|+.+++.||..|..+..+...+......+..+..+...+...-+.+|++|-.|.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567778888888888999999999999999988888888888888888888888888888887776653
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.18 E-value=21 Score=44.04 Aligned_cols=114 Identities=16% Similarity=0.072 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11582 445 ALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNS------------RLSKINESLQSEKLFLQNELDRINSD 512 (1760)
Q Consensus 445 ~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~------------eLqrq~d~leeEk~el~~el~r~~~E 512 (1760)
.+++....+..++..++..+...+.........+........ .+.+.++..+.-..+.+.++.+..++
T Consensus 357 ~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (487)
T 3oja_A 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 333333345555555555555555555555544444433333 35666666777777777777778888
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy11582 513 MDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEM 558 (1760)
Q Consensus 513 ~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el 558 (1760)
.+..+..++.+.++..+++.++..+..++..+..-+.-+.....-+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 8888888888888888888887777777777666665554444333
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.03 E-value=36 Score=33.36 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 433 KAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506 (1760)
Q Consensus 433 ~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el 506 (1760)
...+..+..+-..+-..+..+..++..+...+..+..+...+..+-+..-...+....+.-..+++...+...+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444455555555544444444444444444444444444444444444444444444
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.99 E-value=31 Score=34.96 Aligned_cols=47 Identities=28% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy11582 1051 VEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMN 1097 (1760)
Q Consensus 1051 l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~lr~kl~~~~e~~ 1097 (1760)
++.++..+++.+.+.--.+..|..+++++..||.=+++--+..+..+
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999888888889999999999998877655544443
No 33
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.21 E-value=3 Score=43.22 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11582 425 LTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNL-DKVQKNNSRLSKINESLQSEKLFLQ 503 (1760)
Q Consensus 425 Lk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~-ekLk~~~~eLqrq~d~leeEk~el~ 503 (1760)
++.+|+.+...+.+...++..+...+..-..-....+..+..+..+++.|...+ +.--..+....+....++.....+.
T Consensus 30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~ 109 (135)
T 2e7s_A 30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLT 109 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666667777777777776654 3333333333444444444334444
Q ss_pred HHHHhhhhhhHHHHH
Q psy11582 504 NELDRINSDMDAREV 518 (1760)
Q Consensus 504 ~el~r~~~E~e~~q~ 518 (1760)
..+.....-++..+.
T Consensus 110 ~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 110 EQLREKDMLLDTLTL 124 (135)
T ss_dssp HTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 34
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=80.11 E-value=47 Score=33.20 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 523 KEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDK 602 (1760)
Q Consensus 523 LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEr 602 (1760)
|--+++...+.|...+..-..+...+..|..+..++. ........+-...++.++.+.+.-.+.|..+...+...+.
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666666666666666555 2334444455556677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q psy11582 603 ELQRLQEQLASLRSDKESLEA 623 (1760)
Q Consensus 603 e~~~L~eqla~LrseKesLEs 623 (1760)
..-.+...++.+.++++.|..
T Consensus 83 ~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 83 SEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777888888888777765
No 35
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=80.05 E-value=19 Score=34.64 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 460 LEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFL 502 (1760)
Q Consensus 460 Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el 502 (1760)
--..+......+..|..+++..-..-.+|+.+++++.+++.++
T Consensus 40 E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 40 EMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666666666666666666554
No 36
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.91 E-value=19 Score=36.02 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEM 470 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~e 470 (1760)
.+|..+++.|......|.+...++-.+..-+ +.+.-|..+.+-+..+|..-+..-+.+..+|..|...+..|+.+
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 6777777777777776666666544432211 23334444444444444444444444444444444444443333
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=79.11 E-value=14 Score=35.41 Aligned_cols=69 Identities=28% Similarity=0.276 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHH
Q psy11582 1006 ELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLAR 1085 (1760)
Q Consensus 1006 eLqeLeqE~~elesEl~eLq~rL~~lE~e~e~~~~~~~~~~~~~~l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~ 1085 (1760)
+...+..++.........+..+... |...... ++.++..|++.+.++-=....|..+++++..||.=
T Consensus 15 e~~~l~~e~dn~~~~~edfk~KyE~-E~~~R~~------------~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMRLREKLQE-EMLQREE------------AENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555 4444444 99999999999999999999999999999999986
Q ss_pred HH
Q psy11582 1086 LK 1087 (1760)
Q Consensus 1086 lr 1087 (1760)
++
T Consensus 82 Lk 83 (86)
T 3swk_A 82 LK 83 (86)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.22 E-value=21 Score=37.58 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 584 SDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKG 658 (1760)
Q Consensus 584 a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~ 658 (1760)
+...+.+..+..++..++.++..+.+++.......+.+.-.+..++-++..++.+...|+.++..+..++=..++
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777788888888888888888888888888888888888888888888888889999888776644443
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.19 E-value=29 Score=35.54 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 464 KREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKN 543 (1760)
Q Consensus 464 r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~ 543 (1760)
+.+++..|..|+.+++.++..+..|+..+...+..+ ...+..+..+...+..+|..++..+..
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~-----------------~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG-----------------ELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444444444444444444444443322 223334444444444455555544444
Q ss_pred HHHHHHHH
Q psy11582 544 AKLAKELL 551 (1760)
Q Consensus 544 ~~Lere~L 551 (1760)
.-.++..|
T Consensus 101 ql~EYq~L 108 (129)
T 3tnu_B 101 LLREYQEL 108 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 40
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=77.62 E-value=66 Score=32.82 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 551 LEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ 605 (1760)
Q Consensus 551 Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~ 605 (1760)
|+..+.+.+.....+...+.-|-.+++.-+-...+.-+++.++.|+.+++-..+.
T Consensus 103 LEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 103 LEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIA 157 (167)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 3444555566666666777777777777777778888899998888777655443
No 41
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.29 E-value=44 Score=32.81 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHH
Q psy11582 533 DLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQ 589 (1760)
Q Consensus 533 EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrds 589 (1760)
++..+++.|..+.-+...+..++..+...|..-.......+....++-.|..+|..+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444555555555554444433
No 42
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.86 E-value=9.2 Score=39.62 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=73.1
Q ss_pred cchhhHHHHHHhhchH---HHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHH
Q psy11582 1427 ALEGDQQRLQMLLQEK---ETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLM 1503 (1760)
Q Consensus 1427 ~legelqR~~l~l~~~---E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~ 1503 (1760)
+||.+|..++..++.. ..+...+...++.+...+...+..|..|...+..=...-..|+..-..+-..+..||.+|=
T Consensus 5 ~LEd~L~~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF 84 (135)
T 2e7s_A 5 SLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 84 (135)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544333 2333344456666666666666666666666655555566666666777777777777665
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhchhhhhHHHHhHHHHHHHHHHHHHhhh
Q psy11582 1504 DTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQV 1552 (1760)
Q Consensus 1504 ~~~~~~~~~~~~l~~lqk~l~~~e~~~r~LqerL~~~r~~l~e~k~~~~ 1552 (1760)
+ ..-++.+++...+-.++.+.+.++..|.|...-+.
T Consensus 85 e-------------EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~ 120 (135)
T 2e7s_A 85 D-------------EANNLVADARMEKYAIEILNKRLTEQLREKDMLLD 120 (135)
T ss_dssp H-------------HHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 56678888888888888888888887777777666
No 43
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.57 E-value=67 Score=32.34 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11582 438 QVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFL 502 (1760)
Q Consensus 438 ~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el 502 (1760)
-+..+++.++..+.....+.. .....|+.++..|....+.++.-+-+|+...|.++......
T Consensus 14 ~L~~E~e~~k~K~~~~~~e~~---~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 14 RLKYEVEALKEKLEHQYAQSY---KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 344444555544444333322 22334444444444444444444444444444444443333
No 44
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=75.13 E-value=42 Score=35.35 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=58.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMV 471 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~ev 471 (1760)
.+|..+..-|....+-.++++..++.|+.+...--..++.+..++..+.+-...--..++.+.+....++..+......+
T Consensus 17 erl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRa 96 (147)
T 2b9c_A 17 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 96 (147)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888899999999999999999999988877777777777766666666555555555444444444444433333
Q ss_pred HHHH
Q psy11582 472 ESLN 475 (1760)
Q Consensus 472 e~Le 475 (1760)
+..+
T Consensus 97 e~aE 100 (147)
T 2b9c_A 97 ELSE 100 (147)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.37 E-value=32 Score=35.32 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHH
Q psy11582 464 KREINEMVESLNSNLDKVQKNNSRLSKINESLQS 497 (1760)
Q Consensus 464 r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~lee 497 (1760)
+.+++..|..|+.+++.++..+..|+..+...+.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444444445555554444444444444443
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.69 E-value=66 Score=31.27 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11582 399 EQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNL 478 (1760)
Q Consensus 399 e~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ 478 (1760)
+.|..|.|.|..-=...+.|+.+-+.|..++..+...- ...-...|...+..|+.....+......+..+++.+..++
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888887888888888887777766555432 2223333334444444444444444444444444444444
Q ss_pred HHHH
Q psy11582 479 DKVQ 482 (1760)
Q Consensus 479 ekLk 482 (1760)
+.++
T Consensus 87 ~~~k 90 (93)
T 3s4r_A 87 MRLR 90 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 47
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.63 E-value=84 Score=31.64 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEIT 596 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~ 596 (1760)
+++.+.|..++.+|..|....+.++....-+-. +.+..|..++..++.....+..-+-.+.+.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~-----------------~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY-----------------KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677778888888888888877776443322 224445555555555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 597 IEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKE 640 (1760)
Q Consensus 597 l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~eke 640 (1760)
...++|... ...+-.+.+++.|..+-....-|+.++.
T Consensus 65 NDDLER~~R-------~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 65 NDDLERAKR-------ATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 3344456666677777666666666654
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.24 E-value=83 Score=31.69 Aligned_cols=11 Identities=18% Similarity=0.006 Sum_probs=4.3
Q ss_pred CCCCcchhhhh
Q psy11582 381 SIKPSVTFRKE 391 (1760)
Q Consensus 381 ~r~~s~a~~~~ 391 (1760)
.+.-|+||.|+
T Consensus 6 vkANSeAC~dG 16 (121)
T 3mq7_A 6 DKANSEAARDG 16 (121)
T ss_dssp -----CHHHHH
T ss_pred hhhccHHHHHH
Confidence 34557777766
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.03 E-value=58 Score=33.95 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 441 REKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506 (1760)
Q Consensus 441 ~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el 506 (1760)
.++-.++...+.|..+...+.+....+..++-.+...++.+...+.++++.+..++++...++.++
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444333
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.57 E-value=25 Score=36.63 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 602 KELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELE 668 (1760)
Q Consensus 602 re~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele 668 (1760)
-+++.+..+...+..+.+.++..++++.+.+....-+.+.+..++..+...+..++.++.+|..+++
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666777777777777777777777776655544
No 51
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=69.40 E-value=55 Score=31.48 Aligned_cols=48 Identities=27% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 606 RLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQ 653 (1760)
Q Consensus 606 ~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~ 653 (1760)
.+......+-.++..|...+.++......+.+.+.+|+..+..+...+
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333377777777777777777777777665544
No 52
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=69.14 E-value=89 Score=31.48 Aligned_cols=72 Identities=7% Similarity=0.082 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHH
Q psy11582 454 RVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNR 528 (1760)
Q Consensus 454 ~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S 528 (1760)
..........+..|...+...+..+..++.+++..+.. .++++..+.....+...++.+++..=.+|-.|++
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 44455556667777777777777777777777765543 3444444555554555555555555455544443
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.87 E-value=72 Score=32.59 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 432 TKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREI 467 (1760)
Q Consensus 432 l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL 467 (1760)
...++.++.+.+.++...++.+.+.+..|+..+.+.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 54
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.64 E-value=6.9 Score=37.06 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=44.2
Q ss_pred HHhhhhHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhHHH
Q psy11582 1108 VKECEEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTL 1160 (1760)
Q Consensus 1108 ~Ke~~~L~v~L~~l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s~L 1160 (1760)
..+++.+..+|+++..+=...+++|++|+..|..+...+.-+...|.+|...|
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568889999999999999999999999999999999999999999866654
No 55
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.11 E-value=33 Score=32.44 Aligned_cols=68 Identities=7% Similarity=0.185 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy11582 1283 QQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANS 1350 (1760)
Q Consensus 1283 q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~ 1350 (1760)
-++..+..+-|.+...+..+..++.+.+....+.+.-|..|++.+..++++--.++.+|..++.-|..
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999998887754
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.53 E-value=67 Score=30.27 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=42.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 608 QEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQ 675 (1760)
Q Consensus 608 ~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele~~~~~~~ 675 (1760)
.+.+..++.+++.....+..++..+...+.+..+++.++..+..++..+..++......+.....++.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666666666666666666666666655555554444443
No 57
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.51 E-value=72 Score=32.73 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 522 GKEDMNRRLREDLLIANEDLKNAKLAKEL 550 (1760)
Q Consensus 522 ~LEek~S~Lr~EL~~lrE~L~~~~Lere~ 550 (1760)
.+..+...+..+|..++..+...-.++..
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333333333
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.03 E-value=99 Score=38.43 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=38.8
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy11582 1051 VEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNNR 1099 (1760)
Q Consensus 1051 l~~El~~L~~e~~el~~~l~~l~r~~~~~~~EL~~lr~kl~~~~e~~r~ 1099 (1760)
|+.-+.-|+.++..--..+.+|+..+..+..+|.+|--.+.-+++.|++
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5556666666666666777777788888999999999999999999888
No 59
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=64.99 E-value=83 Score=33.12 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAK 545 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~r~~~E~e~~q~~L~~LEek~S~Lr~EL~~lrE~L~~~~ 545 (1760)
.-...++.|+..+...+....+.. ..|.+....+.-...++++...+....+.++..|..+|..+-+.|+.+.
T Consensus 49 ~deEr~~~lE~qLkeak~~aeead-------rKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDAD-------RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333344444444444444444444 4445555555555666677778888888888888888888888888766
Q ss_pred HHHHHH
Q psy11582 546 LAKELL 551 (1760)
Q Consensus 546 Lere~L 551 (1760)
..-+-.
T Consensus 122 ~~eeka 127 (147)
T 2b9c_A 122 DKVEEL 127 (147)
T ss_dssp HTTTTH
T ss_pred HhHHHH
Confidence 554444
No 60
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.40 E-value=75 Score=32.02 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy11582 410 SADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVE----KSALEKNKREINEMVESLNSNLDKVQKNN 485 (1760)
Q Consensus 410 EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~E----k~~Le~~r~eL~~eve~Le~e~ekLk~~~ 485 (1760)
||.+--+-|+.|+-...+-+.....+-....+-+..|.++++..... ...|+..+..|+.++.....++++|++.+
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555544444444444334455555555555544443 33444444444444445555555555555
Q ss_pred HHHHH
Q psy11582 486 SRLSK 490 (1760)
Q Consensus 486 ~eLqr 490 (1760)
..+..
T Consensus 102 ~~~~~ 106 (121)
T 3mq7_A 102 QVLSV 106 (121)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 54443
No 61
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.37 E-value=78 Score=30.76 Aligned_cols=80 Identities=15% Similarity=0.303 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 584 SDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRL 663 (1760)
Q Consensus 584 a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL 663 (1760)
..|-|-|+.....+-.+|.++..|+.++..++....+--..+|+ ..+..+...+..+..+...+...+..+..++.++
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye--~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYE--EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666777777766666665443332222222 2245555555555555555555555555555544
Q ss_pred HH
Q psy11582 664 NK 665 (1760)
Q Consensus 664 ~~ 665 (1760)
+.
T Consensus 90 k~ 91 (93)
T 3s4r_A 90 RE 91 (93)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 62
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.15 E-value=74 Score=40.68 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=54.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhHHhhhhhHHHHhhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHH
Q psy11582 683 QQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQ-ITEEKDCELSRL 761 (1760)
Q Consensus 683 ~ql~q~E~e~q~~L~~~~~ah~E~~~~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~l~~e~~~a~~~-l~~ek~el~~~~ 761 (1760)
+.+.+...+.++.++.+..+++|. +..|...-+.-+..+..|.+.++.. |....+=+..-+
T Consensus 504 ~~l~~~~~~~~~~~~~~~~~~~e~------------------~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 565 (592)
T 1f5n_A 504 KMLHEMQRKNEQMMEQKERSYQEH------------------LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF 565 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677788888889998 6666666666666666777776655 333344555667
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11582 762 QANLCQLQSHIDKICQQ 778 (1760)
Q Consensus 762 ~~e~~~L~~ei~~l~qe 778 (1760)
..+.+.|+.+|..|+..
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888899999888876
No 63
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=60.55 E-value=18 Score=33.66 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhhhhhHHH
Q psy11582 1111 CEEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTL 1160 (1760)
Q Consensus 1111 ~~~L~v~L~~l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~~l~s~L 1160 (1760)
.+++..+|+++..+=...+++|++|+..|..+...+.-+...|..|...|
T Consensus 2 ~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 2 SHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788899999999999999999999999999999999999998866654
No 64
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=59.95 E-value=1.9e+02 Score=32.57 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=8.0
Q ss_pred HhhhhHHHhHHHHHH
Q psy11582 1465 ERCTSLKTTIDQLNL 1479 (1760)
Q Consensus 1465 ~k~~~L~~~~erL~~ 1479 (1760)
.+-+.+..-.++|..
T Consensus 210 nRea~~~a~~ErL~e 224 (240)
T 4f61_I 210 NREAHFAAMLERLQE 224 (240)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 444555555555554
No 65
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=59.69 E-value=62 Score=30.36 Aligned_cols=69 Identities=26% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 439 VGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELD 507 (1760)
Q Consensus 439 a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~ 507 (1760)
.++++..+-.....|-.-|++|...+..|-..++.|..+.+-++.++..++.-...++....+++.++.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555556666666666666666666666666666666666666666666665555555543
No 66
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.59 E-value=21 Score=33.78 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhhhhhhhHHHHH
Q psy11582 1452 RCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQ 1518 (1760)
Q Consensus 1452 r~~~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~~~~~~~~l~~ 1518 (1760)
.++.+..+|+++|.+++.|...|..|...|..+...-..++..+..+-..|.--=..+..++..|..
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3666777788888888888888888888888777666666666655554443322335555555544
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.21 E-value=1.3e+02 Score=28.67 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLE 633 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Qq~l~ 633 (1760)
+-+++.+..++..+..+...+++.++.|......+++...
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333333333
No 68
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=58.17 E-value=1.3e+02 Score=28.81 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHH
Q psy11582 530 LREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDM 586 (1760)
Q Consensus 530 Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~l 586 (1760)
+..-|..+...|..-...++.|-.++.++..+|+.++...+.-+.-+..+.+.+++.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577778888888889999999999999999999999888888877777666543
No 69
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.92 E-value=1.4e+02 Score=35.67 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 404 MKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGR 441 (1760)
Q Consensus 404 LrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~ 441 (1760)
|++.|.+.+ +.+..++.+|+..++.+.....+...
T Consensus 54 Lqg~Ldk~e---r~~~~rIe~L~~~L~~~s~s~~~~~~ 88 (390)
T 1deq_A 54 MKGLIDEVD---QDFTSRINKLRDSLFNYQKNSKDSNT 88 (390)
T ss_pred HHHHHHHhh---hhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 888888887 55667777777777666665533333
No 70
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.11 E-value=77 Score=31.41 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy11582 429 LDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKL 500 (1760)
Q Consensus 429 l~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~ 500 (1760)
++.+-+...++-.+...+.=.++.|......++.....++.+......+++.++..+..|+..++.+++.+.
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334433344444444444455555555666666667777777777777777777777777777766554
No 71
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.30 E-value=44 Score=31.17 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHhhhhhhhHHhhhhHHHhHHHHHHHHHHhhchhhhhhHhHHHHhHHHHhhhhhhhhhhHHHH
Q psy11582 1455 HQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLK 1517 (1760)
Q Consensus 1455 ~l~~ql~~~E~k~~~L~~~~erL~~~L~kae~~e~~Lr~~~~~l~~~l~~~~~~~~~~~~~l~ 1517 (1760)
.+..+|+++|.++..|...|..|...|..+...-..++..+..+-..|.--=..+..+++.|.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345566777777777777777777777777666666655555554444332222444444444
No 72
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.30 E-value=1.9e+02 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 400 QLHTMKKQYESADESQYNMSQQVTSLTSQLDQ 431 (1760)
Q Consensus 400 ~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~ 431 (1760)
.+.-|.-+|..+++.+..-.....+++.++..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666665555555555555554444
No 73
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.87 E-value=3.2e+02 Score=32.84 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11582 839 TINTLREQLNRTVAKL 854 (1760)
Q Consensus 839 ~i~~l~eEL~~~~~~l 854 (1760)
.|..|...|..+..-.
T Consensus 68 rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 68 RINKLRDSLFNYQKNS 83 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333333333
No 74
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.19 E-value=17 Score=33.88 Aligned_cols=48 Identities=27% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHhhhcchHhhhhchhHhhHhHh
Q psy11582 1348 ANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRE 1395 (1760)
Q Consensus 1348 l~~qeeal~~~~~E~~~~~~ki~~le~~~~~~e~e~r~l~e~l~klra 1395 (1760)
+.--+++|+.+++|.+.--+.|..+|..+..++++++.|+..+.|+++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455568888899999998899999999999999999999999888765
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.74 E-value=20 Score=31.49 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q psy11582 1647 GGDSEEITKLCRERSELRNKLENLHDKIQMLRDQLN 1682 (1760)
Q Consensus 1647 ~~~~~~~~~~q~e~~~~r~~~~~l~~~~~~l~~ql~ 1682 (1760)
|....++-.++.|+.+|+.|+..|..++..|+.+|.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678889999999999999999999999999886
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.20 E-value=1.1e+02 Score=31.22 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=24.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHhHhhHHHHHHHHHhHHHHH
Q psy11582 517 EVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEM----------QTLLAHIEKSKGDVEAEMERLLLDRSDM 586 (1760)
Q Consensus 517 q~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el----------~~aL~~aE~slaeLE~elekLrsE~a~l 586 (1760)
+..+..|..++..|..||..-+-....+..+.+.|..+.+.+ ..-+..+|..-...+.-..+|+.-+..+
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666655555555555555555443 2223334443334455555555554444
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.63 E-value=3.9e+02 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11582 861 TEEEKAILERKISDLKSEREALVTESEELKVQL 893 (1760)
Q Consensus 861 lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL 893 (1760)
+..+...++..+...+...............++
T Consensus 365 l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~ 397 (487)
T 3oja_A 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchh
Confidence 333344444444444444444444444443333
No 78
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=47.06 E-value=20 Score=45.57 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 408 YESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNS 476 (1760)
Q Consensus 408 L~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~ 476 (1760)
-.++++....|+.++..+.++.+.....|..+...+..|.........+...|+....++..+...|..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777776666666666665555555555555555555555554444444444444433
No 79
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.60 E-value=1.8e+02 Score=36.17 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11582 924 LRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQ 975 (1760)
Q Consensus 924 LrkEL~elrr~Ladle~Eke~lq~sl~ELre~Lkk~Ese~~eler~iEe~~q 975 (1760)
|++.+..++..+...-..+..|+..+.++...++++| ..+..+|+.++.
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE---vDIdiqirsCKg 163 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE---VDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccc
Confidence 4444444444444444556677777777777788888 444555555553
No 80
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.79 E-value=1.1e+02 Score=29.10 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=34.0
Q ss_pred HHHHHHHhhhchhhhhHHHHhHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH
Q psy11582 1516 LKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALK 1569 (1760)
Q Consensus 1516 l~~lqk~l~~~e~~~r~LqerL~~~r~~l~e~k~~~~~~~~~~~~l~~r~q~Lq 1569 (1760)
+..||.+|.+==..|+.++|+|..+|+++--.-..+. +...+.+.|.
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~-------eae~rn~eL~ 58 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLR-------EAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3467888877778899999999999887765555555 5555555555
No 81
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.82 E-value=43 Score=42.64 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHH
Q psy11582 522 GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMER 578 (1760)
Q Consensus 522 ~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elek 578 (1760)
.++.+...+.++.....++|....--...|..+......+-..++....+++.+..+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~ 395 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQR 395 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444433444333333333333333333333333333
No 82
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.56 E-value=1.9e+02 Score=28.26 Aligned_cols=21 Identities=0% Similarity=0.091 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q psy11582 464 KREINEMVESLNSNLDKVQKN 484 (1760)
Q Consensus 464 r~eL~~eve~Le~e~ekLk~~ 484 (1760)
+.-|..+++.-..+|...|.+
T Consensus 42 i~vLk~Qv~IY~~DF~aERad 62 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHA 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.02 E-value=3.5e+02 Score=32.85 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 637 VKKEQLEHEVQELLVKQESLKGQVVRL 663 (1760)
Q Consensus 637 ~ekeqLE~E~q~l~~~~E~Lq~el~rL 663 (1760)
++.+.+|+++..+...++.+..+|+++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555544444444444444443
No 84
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.46 E-value=50 Score=32.63 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=53.9
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHhhh----------HHHHH----HhHHHHHHHH
Q psy11582 1526 AENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDLS----------DAHTQ----ESNKMAQAQQ 1591 (1760)
Q Consensus 1526 ~e~~~r~LqerL~~~r~~l~e~k~~~~~~~~~~~~l~~r~q~Lq~~l~d~e----------~~l~q----~~~~e~~~~~ 1591 (1760)
|++.--.--|.+++++..+..+++-+. .|.+++..|..+|.... ++|.= -......+..
T Consensus 3 ~~~~~~~~~e~~~~lr~ei~~Le~E~~-------rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~ 75 (100)
T 1go4_E 3 AEQSFLFSREEADTLRLKVEELEGERS-------RLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLRE 75 (100)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHH
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHH
Confidence 344444455689999999999999999 99999999999997733 11111 0111223346
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy11582 1592 TMRALQEEKYALETKLSQTKA 1612 (1760)
Q Consensus 1592 ~~~~lq~e~~~l~~rl~~~~~ 1612 (1760)
.+..||.|...|+++|..|+.
T Consensus 76 ~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 76 DHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999988764
No 85
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=41.52 E-value=1.6e+02 Score=36.33 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKS-----ALEKNKRE 466 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~l~~a~~E~~~l~~~le~L~~Ek~-----~Le~~r~e 466 (1760)
..-..++.+|..|++.+.++...-.....-+..++.-+........+...-+....+.++..-.-.. ..+..+..
T Consensus 88 kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~ 167 (461)
T 3ghg_B 88 QQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRV 167 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 5556778888888888888888888877777777777777666664433333333444443332222 33444444
Q ss_pred HHHHHHHHHHhHHHHHHHhHH
Q psy11582 467 INEMVESLNSNLDKVQKNNSR 487 (1760)
Q Consensus 467 L~~eve~Le~e~ekLk~~~~e 487 (1760)
|+..++.+...+.+|+..+..
T Consensus 168 l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 168 LRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555555555544444444443
No 86
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.34 E-value=1.4e+02 Score=28.28 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHhhhhHHHHHHHHHHH
Q psy11582 1319 KMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKV 1369 (1760)
Q Consensus 1319 ~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~~qeeal~~~~~E~~~~~~ki 1369 (1760)
-|+.|--.|.+++-+|-+-|-+|.++++.+.+-...|--++.|.+-+.+++
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345577788999999999999999999777666666666666665555544
No 87
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=41.23 E-value=2.8e+02 Score=27.60 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLT 426 (1760)
Q Consensus 392 ~KLestqe~L~rLrdqL~EvE~e~r~Le~QaqkLk 426 (1760)
+|...+.-+|+..+.--++++...+.|+.++.+++
T Consensus 8 RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777654
No 88
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.16 E-value=2.9e+02 Score=35.20 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=17.7
Q ss_pred hhhHHHHhhhhccHHHHHHhHHHHHHHHHH
Q psy11582 709 KLTEEKINLKKQNEECVTKLTEEKEQVRAA 738 (1760)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~rL~~EKe~~~~~ 738 (1760)
+|.|.+.+|++|=+.....|+.|...+...
T Consensus 553 ~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 553 KLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666666555443
No 89
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.89 E-value=2e+02 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 404 MKKQYESADESQYNMSQQVTSLTS 427 (1760)
Q Consensus 404 LrdqL~EvE~e~r~Le~QaqkLk~ 427 (1760)
|..+|..+++.+.+-..++.+++.
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke 30 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444433
No 90
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=39.28 E-value=2.4e+02 Score=26.71 Aligned_cols=46 Identities=35% Similarity=0.471 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 837 RNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREAL 882 (1760)
Q Consensus 837 r~~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l 882 (1760)
-+++....++|+.=+.+|++.+..++.+...++..+..+......+
T Consensus 27 l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 27 LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667788888888888888888888887777777666654443
No 91
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=38.34 E-value=50 Score=34.53 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=25.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11582 549 ELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILF 626 (1760)
Q Consensus 549 e~Leqek~el~~aL~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lf 626 (1760)
.+|+..+.++...|.-....+..++..+..+.++...+...+.|+..+..-.+--+..+.-++...|..|..++..|.
T Consensus 62 ~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEadl~ 139 (146)
T 2xnx_M 62 NVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDLL 139 (146)
T ss_dssp HHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------------
T ss_pred hhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555555555444444444445555566666666555555544
No 92
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.08 E-value=72 Score=30.24 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=54.7
Q ss_pred hcchHhhhhchhHhhHhHhhhhhhHHHHHHhHHHhhhhhhhhhhhhhhhccchhhHHHHHHhhchHHHHhHHhHHHH
Q psy11582 1377 SNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERC 1453 (1760)
Q Consensus 1377 ~~~e~e~r~l~e~l~klra~~~~l~~e~r~L~e~l~~~E~r~~~lel~rr~legelqR~~l~l~~~E~e~q~l~er~ 1453 (1760)
.+.+.+.++..++..+ ...+-.+++.|+-.++..|+-..+-|-+..+-..++.-++-.+..+++++..|++.+
T Consensus 5 ~~~Ekd~~~~ee~~~~----~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 5 VGMEKEQREQEEKQRK----AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp ---------CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhhHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555666555443 235888999999999999999999999999999999999999999999999888875
No 93
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.89 E-value=2.5e+02 Score=27.54 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHH
Q psy11582 438 QVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQS 497 (1760)
Q Consensus 438 ~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~lee 497 (1760)
++-++|=.+.+.++.+..+...+.......-..|..|+.++++|+..|..|-++...+..
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 366666667777777777777777777777888999999999999999888877766543
No 94
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.72 E-value=2.4e+02 Score=28.74 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHH
Q psy11582 463 NKREINEMVESLNSNLDKVQKNNSRL 488 (1760)
Q Consensus 463 ~r~eL~~eve~Le~e~ekLk~~~~eL 488 (1760)
.+.++.......+..|.+||..+++|
T Consensus 93 ~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 93 SLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666555544
No 95
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.27 E-value=56 Score=30.45 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=41.6
Q ss_pred hhHHHHHHhhchHHHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHH
Q psy11582 1430 GDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLN 1478 (1760)
Q Consensus 1430 gelqR~~l~l~~~E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~ 1478 (1760)
|-++.++..+..+..+++...+++..+..+|.+.+.-+..|+..+|.+.
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577888888888888999999999999999998888888888888764
No 96
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.13 E-value=3.7e+02 Score=27.12 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=8.3
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q psy11582 681 LVQQASGLDADYQNQISNL 699 (1760)
Q Consensus 681 l~~ql~q~E~e~q~~L~~~ 699 (1760)
|.+...+.-.+.+..|...
T Consensus 64 Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 64 LQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 97
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.20 E-value=2.4e+02 Score=27.93 Aligned_cols=67 Identities=6% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11582 563 AHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQ 629 (1760)
Q Consensus 563 ~~aE~slaeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLEs~Lfe~Q 629 (1760)
.++--+++-|-.+-+.+.-+++-++|.|..+...+..+.|+...-..++..+.-..+.|...+..++
T Consensus 12 rKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 12 KKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555555555555555555555555444444444444444444444433
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.48 E-value=3.5e+02 Score=26.41 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQKNNSRLSKINESL 495 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~~~~eLqrq~d~l 495 (1760)
.+..++..+...++.++..+..+...+..+
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333333333
No 99
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=32.66 E-value=3.2e+02 Score=25.71 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q psy11582 435 QLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEK 499 (1760)
Q Consensus 435 ~l~~a~~E~~~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk 499 (1760)
+++.+-.+...|..+...|+--++.|=..+.+|..+-+.+..++..++.+...++..+..++++.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555555555443
No 100
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.39 E-value=3.1e+02 Score=26.15 Aligned_cols=46 Identities=7% Similarity=0.085 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 462 KNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELD 507 (1760)
Q Consensus 462 ~~r~eL~~eve~Le~e~ekLk~~~~eLqrq~d~leeEk~el~~el~ 507 (1760)
...-++..+++.|..++..|+-.+.++..++..+.+.-.++-.+++
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666666666665555555553
No 101
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.03 E-value=3e+02 Score=25.25 Aligned_cols=25 Identities=8% Similarity=0.128 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 844 REQLNRTVAKLEELKTRTEEEKAIL 868 (1760)
Q Consensus 844 ~eEL~~~~~~leea~~~lq~El~~L 868 (1760)
..-|.+.+++++....+.+.+...+
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~ 32 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEW 32 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3446677778877777777766654
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.98 E-value=3.3e+02 Score=25.93 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 623 AILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELE 668 (1760)
Q Consensus 623 s~Lfe~Qq~l~qle~ekeqLE~E~q~l~~~~E~Lq~el~rL~~ele 668 (1760)
..+.+++.++..+..+...|.+.+..+.-.++.++..-..+..++|
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666555555555555555555555555555445555554
No 103
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.90 E-value=4.8e+02 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=10.5
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11582 475 NSNLDKVQKNNSRLSKINESLQSEKLF 501 (1760)
Q Consensus 475 e~e~ekLk~~~~eLqrq~d~leeEk~e 501 (1760)
..++..|+..++-++..+..++.+-..
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444443333
No 104
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.69 E-value=4.9e+02 Score=31.58 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q psy11582 211 RLLALWRDVV 220 (1760)
Q Consensus 211 rlL~LWRevv 220 (1760)
..|.+|..++
T Consensus 204 ~al~~~~~l~ 213 (471)
T 3mq9_A 204 AGLTFLVDLI 213 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3555555543
No 105
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.50 E-value=1.3e+02 Score=28.42 Aligned_cols=57 Identities=21% Similarity=0.134 Sum_probs=41.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11582 1555 LENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTK 1611 (1760)
Q Consensus 1555 ~~~~~~l~~r~q~Lq~~l~d~e~~l~q~~~~e~~~~~~~~~lq~e~~~l~~rl~~~~ 1611 (1760)
..+.+++.+||-.|+..++-.+.+|..-...-..-++.+..|+.....|.+|+..++
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356678899999999999988888877777777777777778777777777776554
No 106
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.76 E-value=6.4e+02 Score=27.96 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHhHHHHHH
Q psy11582 839 TINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQL-----HLSEDKVDTVQ 904 (1760)
Q Consensus 839 ~i~~l~eEL~~~~~~leea~~~lq~El~~LeeqleeLq~E~~~l~~EiEkLqsqL-----~LlEERid~lr 904 (1760)
.|..+.+-+......++.....+..+...+...++.+..+++.+....+..+.++ .+++++..-++
T Consensus 122 ~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR 192 (213)
T 1ik9_A 122 VIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIR 192 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4567777777777777777888888888888888889999999998888888887 45555554444
No 107
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.40 E-value=2.1e+02 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy11582 532 EDLLIANEDLKNAKLAKELLEQNKEEMQTLLAH 564 (1760)
Q Consensus 532 ~EL~~lrE~L~~~~Lere~Leqek~el~~aL~~ 564 (1760)
+++..++.++..+..+++.|.++++.+...|.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777776666666666554
No 108
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.30 E-value=83 Score=29.15 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=26.7
Q ss_pred hhhhhhHHHHHHhhHHHHHhhHhHHHhHHHHHHHHHH
Q psy11582 125 EERIQDLNTALRRLDDERRENEKLRKMNSVYKEQLDE 161 (1760)
Q Consensus 125 ~e~~~dle~aL~rLEeEqqR~e~L~qvN~~LReQLeq 161 (1760)
..+.-+||.-+..|+.+ +.+|..-|..||.++..
T Consensus 28 ~~~i~~LE~~v~~le~~---~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 28 EDHLKALETQVVTLKEL---HSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 78888999888888765 44577778888888777
No 109
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.75 E-value=3.5e+02 Score=25.62 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy11582 445 ALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKV 481 (1760)
Q Consensus 445 ~l~~~le~L~~Ek~~Le~~r~eL~~eve~Le~e~ekL 481 (1760)
.+++.++.|+.-.+.|......|...|..|..+...+
T Consensus 22 q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l 58 (78)
T 3iv1_A 22 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEV 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 110
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.37 E-value=3.3e+02 Score=27.43 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=33.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy11582 722 EECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQL 768 (1760)
Q Consensus 722 ~~~~~rL~~EKe~~~~~l~~e~~~a~~~l~~ek~el~~~~~~e~~~L 768 (1760)
..+++||+.+.+.+.-.++..+.+.....++|.+++..+++..+.++
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ 84 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999988888877776666666666666655544443
No 111
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.55 E-value=3.9e+02 Score=28.21 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHhhhhHHHHHHH----HhhhhhhhhhhHHhHHHHHHHHHhhHHHHHHHhh
Q psy11582 1079 VVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVLLD----LCARLGGAEERVRASSAHLLQLEASKKDVEHKLS 1154 (1760)
Q Consensus 1079 ~~~EL~~lr~kl~~~~e~~r~~~r~lee~~Ke~~~L~v~L~~----l~~rl~~a~~r~~~le~eL~~~e~~rr~~e~~L~ 1154 (1760)
-+.+...+-..+.+....+..-+..|+...++...|...|.+ .+..+..++-++.+-...+.++-.-|+++...+.
T Consensus 66 Dk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 66 DKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666777777777777888888888888888888877777 7778999999999999999999999988888776
Q ss_pred hh
Q psy11582 1155 SI 1156 (1760)
Q Consensus 1155 ~l 1156 (1760)
+|
T Consensus 146 sL 147 (152)
T 4fla_A 146 SL 147 (152)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 112
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.67 E-value=4.5e+02 Score=24.82 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHh----HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11582 547 AKELLEQNKEEMQTLLAHIEKS----KGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLE 622 (1760)
Q Consensus 547 ere~Leqek~el~~aL~~aE~s----laeLE~elekLrsE~a~lrdsL~Km~v~l~alEre~~~L~eqla~LrseKesLE 622 (1760)
+++.+...+..+...+..++.. +.++...+..+..+...++..+.....+...+-.=-..|.-+|+..|.-.+.-+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEGEe 81 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEE 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Q ss_pred HHH
Q psy11582 623 AIL 625 (1760)
Q Consensus 623 s~L 625 (1760)
++|
T Consensus 82 ~Rl 84 (84)
T 1gk4_A 82 SRI 84 (84)
T ss_dssp ---
T ss_pred ccC
No 113
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=23.81 E-value=1.9e+02 Score=29.65 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 794 LLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKIS 873 (1760)
Q Consensus 794 L~~~e~Ek~~L~ekL~~~q~eL~~a~~eler~rrea~~~~e~er~~i~~l~eEL~~~~~~leea~~~lq~El~~Leeqle 873 (1760)
|..++.+|..|-+|+-.+.+.+.....+++.+++.-...-.+=+--+.++...++-.+..-.+ -+..+..|...+.
T Consensus 18 L~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~e----EKrkLAqLQ~AY~ 93 (130)
T 3cl3_D 18 LEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASE----EKRKLAQLQVAYH 93 (130)
T ss_dssp ---------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 874 DLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAEN 919 (1760)
Q Consensus 874 eLq~E~~~l~~EiEkLqsqL~LlEERid~lr~ele~LereL~elee 919 (1760)
.|-.+++...+-+. ...++..++ .++++...|..+++
T Consensus 94 ~LfqeYd~~lK~~~-------~~~e~~~~~--ql~dL~qqLq~aee 130 (130)
T 3cl3_D 94 QLFQEYDNHIKSSV-------VGSERKRGM--QLEDLKQQLQQAEE 130 (130)
T ss_dssp HHHHHHHHHHHHHH-------CC-----------------------
T ss_pred HHHHHHHHHHHHHH-------Hhhhhhccc--hHHHHHHHHHHhcC
No 114
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.05 E-value=4.9e+02 Score=31.72 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=61.9
Q ss_pred HHHhHHHHhHhhHhhHHHhHHHHHHHhhHHHhhhhhccccc----ccCccch---hhhHHHHHHHH----HhhhhHHHHH
Q psy11582 222 IKRSFTAMQSATEQDLSKIRSDLNQSTRQMSGACNGLVALS----AGSSATN---AEKDKLVKENS----ELKSQVTVLK 290 (1760)
Q Consensus 222 ~Rr~f~E~ksaTeRdL~~~r~E~~r~sr~l~~ac~~Ls~l~----~~~s~~~---~qL~ekv~e~~----eLq~rl~el~ 290 (1760)
|.-.+.-+...++.||.+|...+..+++.-.++-.-+..++ ....... ...-++.+.|+ .+..-|....
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45567788889999999999999999988555533322222 2221111 22234444444 2344455555
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh
Q psy11582 291 SENNAMANESKQKEERVEELLKRIHTLEARVEE 323 (1760)
Q Consensus 291 ~~~e~l~~q~~eke~~i~~L~~~l~~LEs~~~~ 323 (1760)
..+..|+..+.-....|..|+..+..|+..|..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566666666666666677777777666666654
No 115
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.48 E-value=1.6e+02 Score=25.34 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=35.1
Q ss_pred HHHhHHhHHHHHHHhhhhhhhHHhhhhHHHhHHHHHHHHH
Q psy11582 1443 ETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLE 1482 (1760)
Q Consensus 1443 E~e~q~l~er~~~l~~ql~~~E~k~~~L~~~~erL~~~L~ 1482 (1760)
|-.+..|.+-...|.-+++.++..|+.+..+++||+.-|-
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999999998553
No 116
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=22.26 E-value=8.8e+02 Score=27.36 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=61.4
Q ss_pred ChHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy11582 1270 DPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAAN 1349 (1760)
Q Consensus 1270 Dp~~vr~~lr~l~q~l~~~eRERdd~r~q~~~l~~ql~e~~~~~~~~~~~~~qlq~~l~~~ee~kr~~e~~L~sa~~~l~ 1349 (1760)
||..| +.++.+...++.+=+.|+..|..+......+-..-. .-...+...+..+..-+..+-.....-+..|.
T Consensus 35 d~~~~----~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~---~~~~~i~~~l~~l~~~w~~L~~~~~~R~~~Le 107 (326)
T 3kbt_A 35 DEEGA----IVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGH---PEGEQIIRLQGQVDKHYAGLKDVAEERKRKLE 107 (326)
T ss_dssp SHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665 567788888899988899998888876655543210 11234566666677777777666665555554
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHhh
Q psy11582 1350 SQSEAMDQKNEELQHLREKVLTLELTL 1376 (1760)
Q Consensus 1350 ~qeeal~~~~~E~~~~~~ki~~le~~~ 1376 (1760)
..- .+.+-..+...+..=|..-|..+
T Consensus 108 ~~l-~l~~f~~~~~~l~~Wl~~~e~~l 133 (326)
T 3kbt_A 108 NMY-HLFQLKRETDDLEQWISEKELVA 133 (326)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34455566666665555555443
No 117
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=22.17 E-value=7.6e+02 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy11582 522 GKEDMNRRLREDLLIAN 538 (1760)
Q Consensus 522 ~LEek~S~Lr~EL~~lr 538 (1760)
.++....+|+-+|..+.
T Consensus 128 elERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 128 EIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHH
Confidence 44444444444444433
No 118
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.20 E-value=1.3e+02 Score=26.40 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=20.8
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy11582 476 SNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506 (1760)
Q Consensus 476 ~e~ekLk~~~~eLqrq~d~leeEk~el~~el 506 (1760)
.+++.|+..|.+|+..+..+..+..++...+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777766666666554
Done!