Query psy11582
Match_columns 1760
No_of_seqs 260 out of 298
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 22:13:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11582.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11582hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 34.9 1.5E+02 0.011 27.6 11.9 45 518-562 88-132 (133)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 30.1 1.9E+02 0.014 26.1 11.3 30 594-623 71-100 (107)
3 d1seta1 a.2.7.1 (A:1-110) Sery 27.5 1.2E+02 0.0087 27.5 9.4 31 406-436 28-58 (110)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 22.9 2.5E+02 0.018 25.1 11.6 18 466-483 69-86 (107)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 21.2 3E+02 0.022 25.3 13.6 39 541-579 3-41 (133)
6 d1szia_ a.24.23.1 (A:) Mannose 16.8 5.3E+02 0.038 26.4 13.1 52 129-181 48-101 (226)
7 d1f5na1 a.114.1.1 (A:284-583) 13.7 5.9E+02 0.043 25.5 19.7 12 765-776 286-297 (300)
8 d2ca5a1 a.2.20.1 (A:20-78) Mxi 10.8 55 0.004 27.0 2.0 32 1702-1734 4-35 (59)
9 d1seta1 a.2.7.1 (A:1-110) Sery 10.0 5.4E+02 0.039 22.7 11.1 69 863-931 28-97 (110)
10 d1uuja_ a.221.1.1 (A:) Lissenc 7.2 90 0.0066 27.2 2.0 20 71-90 57-76 (76)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.87 E-value=1.5e+02 Score=27.57 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11582 518 VELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLL 562 (1760)
Q Consensus 518 ~~L~~LEek~S~Lr~EL~~lrE~L~~~~Lere~Leqek~el~~aL 562 (1760)
.-++.++.|...+...+..+.+.+..+...+..+.....++-.|+
T Consensus 88 eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666666666666666666666655555555443
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.07 E-value=1.9e+02 Score=26.08 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy11582 594 EITIEANDKELQRLQEQLASLRSDKESLEA 623 (1760)
Q Consensus 594 ~v~l~alEre~~~L~eqla~LrseKesLEs 623 (1760)
...++.++..+..+.+++..+..+.+.+..
T Consensus 71 ~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 71 QEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=27.46 E-value=1.2e+02 Score=27.53 Aligned_cols=31 Identities=6% Similarity=0.208 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 406 KQYESADESQYNMSQQVTSLTSQLDQTKAQL 436 (1760)
Q Consensus 406 dqL~EvE~e~r~Le~QaqkLk~El~~l~~~l 436 (1760)
+.+-....+++.+..++..++.+...++.+.
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666655554
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.94 E-value=2.5e+02 Score=25.12 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy11582 466 EINEMVESLNSNLDKVQK 483 (1760)
Q Consensus 466 eL~~eve~Le~e~ekLk~ 483 (1760)
.+...++.++..+.++..
T Consensus 69 ~l~~~~e~l~~~i~~l~~ 86 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.17 E-value=3e+02 Score=25.27 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy11582 541 LKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERL 579 (1760)
Q Consensus 541 L~~~~Lere~Leqek~el~~aL~~aE~slaeLE~elekL 579 (1760)
|..+.-+++.++++...+...+..+...+.++....+.+
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L 41 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555444433
No 6
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.78 E-value=5.3e+02 Score=26.35 Aligned_cols=52 Identities=21% Similarity=0.456 Sum_probs=25.3
Q ss_pred hhHHHHHHhhHHHHHhhHh-HHHhHHHHHHHHHHhHH-hhHHHHHHHHHHHHHHH
Q psy11582 129 QDLNTALRRLDDERRENEK-LRKMNSVYKEQLDEAHH-TNEALTNDLEKLTTDWT 181 (1760)
Q Consensus 129 ~dle~aL~rLEeEqqR~e~-L~qvN~~LReQLeqa~~-~N~aL~~dl~klt~dw~ 181 (1760)
--|+-||++|-..++|+-. |++++.++.. ++.++. +|..|...-.||-.-|.
T Consensus 48 RAy~hal~klr~ak~~~qEaLsqL~~tl~L-ie~ak~~v~~~l~~~qekL~q~W~ 101 (226)
T d1szia_ 48 HAYEHSLGKLQNARQKAQETLQQLTSVLGL-MESVKQGVDQRLGEGQEKLHQMWL 101 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcCccccchHHHHHHHHH
Confidence 3689999999999999865 7777766643 333333 36667777667666553
No 7
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.72 E-value=5.9e+02 Score=25.49 Aligned_cols=12 Identities=8% Similarity=0.147 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy11582 765 LCQLQSHIDKIC 776 (1760)
Q Consensus 765 ~~~L~~ei~~l~ 776 (1760)
...+..+|..|+
T Consensus 286 ~~~l~~ei~~Lk 297 (300)
T d1f5na1 286 SRIMKNEIQDLQ 297 (300)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 8
>d2ca5a1 a.2.20.1 (A:20-78) MxiH needle protein {Shigella flexneri [TaxId: 623]}
Probab=10.76 E-value=55 Score=27.00 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhhhhhccCCCcchhhhhhhhhhh
Q psy11582 1702 MQQLRQALGDSLRTVAHDPAVDALLLEHEANKL 1734 (1760)
Q Consensus 1702 ~~~l~~~~~~sl~~v~~~~~~~~~~l~~e~~~l 1734 (1760)
++.|-..|.+.|..++-+|+ ||.+|-.=--||
T Consensus 4 v~~l~~~l~~Al~~L~~~pS-dp~~LA~YQ~kl 35 (59)
T d2ca5a1 4 TQTLQGELTLALDKLAKNPS-NPQLLAEYQSKL 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 56778888999999999997 999886543343
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=9.97 E-value=5.4e+02 Score=22.73 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 863 EEKAILERKISDLKSEREALVTESEELKVQL-HLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDT 931 (1760)
Q Consensus 863 ~El~~LeeqleeLq~E~~~l~~EiEkLqsqL-~LlEERid~lr~ele~LereL~elee~~e~LrkEL~el 931 (1760)
..+-.+......+..+++.+..+...+..++ ....+..+.+..+...+..++..++.....+..++..+
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.17 E-value=90 Score=27.22 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhhhhHHHh
Q psy11582 71 VSKLQAKLLQYKQRCKELEL 90 (1760)
Q Consensus 71 v~~LQaKVlqYr~rc~elE~ 90 (1760)
|-|||.||+.--.+|+.|+.
T Consensus 57 ViRLQkKImdLE~~~~~lqe 76 (76)
T d1uuja_ 57 VIRLQKKVMELESKLNEAKE 76 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Done!