RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11582
(1760 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 96.8 bits (241), Expect = 4e-20
Identities = 56/331 (16%), Positives = 125/331 (37%), Gaps = 21/331 (6%)
Query: 389 RKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVK 448
K+ +L +E+ + + + ++ + ++ L +L A+ + L
Sbjct: 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920
Query: 449 N--------------IEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINES 494
IE L+ K+++ + + L L++ + +L +
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 495 LQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQN 554
+ +++++ + + E + E+ L +L E KN K E
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 555 KEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASL 614
E++ L EKS+ ++E +L + SD++EQI++ + ++ L+ QLA
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ-------AQIAELKAQLAKK 1093
Query: 615 RSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRA 674
+ ++ A L D S + K +LE + +L ES K + K+ D +
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 675 QETKASLVQQASGLDADYQNQISNLKKQNEE 705
+ K L + + S+ K +++
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 96.1 bits (239), Expect = 6e-20
Identities = 57/324 (17%), Positives = 128/324 (39%), Gaps = 2/324 (0%)
Query: 431 QTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSK 490
+ + ++ E + + + E LE+ ++ E L L + + +
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 491 INESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKEL 550
+ L ++K L+ L + + ++ E + + +++++ +L E L+ + A++
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 551 LEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQ 610
L+ K + +E +E + +L +R + E++S + +++ + L +
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 611 LASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDT 670
S LE L + ++ + K +LE E +L + L+ Q+ L +L
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 671 EKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTE 730
E+ Q A L + + + +I L+ + L EK K ++ L+E
Sbjct: 1094 EEELQAALARL-EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ-KRDLSE 1151
Query: 731 EKEQVRAALEKKLHATVKQITEEK 754
E E ++ LE L T Q
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRG 1175
Score = 92.2 bits (229), Expect = 1e-18
Identities = 49/322 (15%), Positives = 130/322 (40%)
Query: 1303 KREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEEL 1362
+ E++ + + + +A+ ++ L+++ L + + + +++E + E
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 1363 QHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLE 1422
L K LE L + + +++ + + ++ + L+++L EA KL+
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 1423 LQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLE 1482
L++V +G ++++ + E +KL + + ++ L + L
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Query: 1483 RASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQA 1542
+ + +EL ++ +++ + + + L + + + + L+ +L +
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 1543 SLAELRRQQVNRLENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYA 1602
L + + +++ + L+ I DL + E +A++ R L EE A
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Query: 1603 LETKLSQTKAAANSQNELEVKE 1624
L+T+L T +Q EL +
Sbjct: 1156 LKTELEDTLDTTATQQELRGSD 1177
Score = 89.9 bits (223), Expect = 6e-18
Identities = 74/386 (19%), Positives = 160/386 (41%), Gaps = 50/386 (12%)
Query: 435 QLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINES 494
L +V R++E + E L+ K +K + E+ E+ + K + + + E
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQ-------KHTQLCEEKNLLQEK 900
Query: 495 LQSEKLFLQNELDRINSDMDAREVELRGK-EDMNRRLREDLLIANEDLKNAKLAKELLEQ 553
LQ+E L E + + + A++ EL +M R+ E + + L+
Sbjct: 901 LQAETE-LYAEAEEMRVRLAAKKQELEEILHEMEARIEE-----------EEERSQQLQA 948
Query: 554 NKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLAS 613
K++MQ + +E+ + EA ++L L++ + +I K E ++ +++Q
Sbjct: 949 EKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME-------DDILIMEDQNNK 1001
Query: 614 LRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKR 673
L +++ LE + D ++L + + K + L + L+ ++ + K ++ EK
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 674 AQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKE 733
++ + +D QI+ L+ Q E L + +++ + + +L +E
Sbjct: 1062 KRKLEGES--------SDLHEQIAELQAQIAE----LKAQLAKKEEELQAALARLEDETS 1109
Query: 734 QVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQA 793
Q + KK+ I++ LQ +L ++ +K +Q D L E + +
Sbjct: 1110 Q-KNNALKKIRELESHISD--------LQEDLESEKAARNKAEKQKRD--LSEELEALKT 1158
Query: 794 LLIAQQDQKAIQDRLSQVLKELEEEK 819
L D A Q L + +++K
Sbjct: 1159 ELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 86.0 bits (213), Expect = 7e-17
Identities = 51/340 (15%), Positives = 124/340 (36%), Gaps = 35/340 (10%)
Query: 1275 RKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEK 1334
+ ++ ++ + E E +L+ L E L + E+ A+A++ L +K
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 1335 -------YALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGD 1387
+ +E ++ + + + + +++ L E++ E + EK D
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Query: 1388 DKL-------MKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQ 1440
K+ + + +L E++ L++ +S + + E + L + + + ++
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Query: 1441 EKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQR 1500
E E L K ++ + + LE + L I +L + A + E+Q
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Query: 1501 NLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDD 1560
L + + K + E+ LQE L++ +A+ + +Q+
Sbjct: 1103 RL-------EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK--------- 1146
Query: 1561 LKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEK 1600
+ L E++ L + A Q+ + ++
Sbjct: 1147 -----RDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181
Score = 84.5 bits (209), Expect = 2e-16
Identities = 68/350 (19%), Positives = 144/350 (41%), Gaps = 42/350 (12%)
Query: 573 EAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLAS---LRSDKESLEAILFDTQ 629
+ E++R + ++ + E +E LQE+L + L ++ E + L +
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 630 SHLE----QSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEK---RAQETKASLV 682
LE + + + E+ E Q+L +++ ++ Q++ L ++LE+ E + Q K +
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Query: 683 QQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKK 742
+ + ++ I ++ QN KLT+E+ L+++ + T L EE+E+ + K
Sbjct: 983 GKIKKM----EDDILIMEDQNN----KLTKERKLLEERVSDLTTNLAEEEEKAKNL--TK 1032
Query: 743 LHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQK 802
L + + E + L + + + +L+ K+ + D + + +
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA------------ELQ 1080
Query: 803 AIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTE 862
A L L + EEE R E + + N +++ + + +L+ E
Sbjct: 1081 AQIAELKAQLAKKEEELQAALA-------RLEDETSQKNNALKKIRELESHISDLQEDLE 1133
Query: 863 EEKAI---LERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLE 909
EKA E++ DL E EAL TE E+ ++ + +
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 81.8 bits (202), Expect = 2e-15
Identities = 57/347 (16%), Positives = 140/347 (40%), Gaps = 28/347 (8%)
Query: 1366 REKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQR 1425
E++ + L E + + + +L + + +L EK LQ++L + E R
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 1426 VALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERAS 1485
V L +Q L+ +L E E + + +ER + ++++ L+ +++ ++
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 1486 AGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLA 1545
+ G+I+ ++ + + ++ + E+++L+ER+ +LA
Sbjct: 976 LEKVTADGKIKKME--------------DDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 1546 ELRRQQVNRLENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALET 1605
E E +L + + I +L +E + ++ R L+ E L
Sbjct: 1022 EEE-------EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074
Query: 1606 KLSQTKAAANSQNELEVKEVARAGLESQLRMSQWPSESPMNGGDSEEITKLCRERSELRN 1665
++++ +A ++A+ E Q +++ E+ ++I +L S+L+
Sbjct: 1075 QIAELQAQIAELKA----QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130
Query: 1666 KLENL---HDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQAL 1709
LE+ +K + + L+ E++ + + Q+LR +
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177
Score = 81.4 bits (201), Expect = 2e-15
Identities = 50/391 (12%), Positives = 139/391 (35%), Gaps = 31/391 (7%)
Query: 1156 IGSTLRRIAALRYHAFYTLSEKEAELARIRAQYDAYKSMDCHTDRSSDLERYRAAQLHAE 1215
I +R + + + L L ++ Q + ++ D R+ + ++ A+L
Sbjct: 824 IQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKE- 882
Query: 1216 SLLEAREKSHRQQVNRLENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEIVR 1275
LE + ++ N L+ +L R
Sbjct: 883 --LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL---------------------A 919
Query: 1276 KGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKY 1335
+ L + + ++E ++ + +Q L+ E K + ++ + + + LQ EK
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 1336 ALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRE 1395
+ K+ + + + + ++ L ++ LE +S+++ ++ ++K +
Sbjct: 980 TADGKIKKME-------DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 1396 SGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEH 1455
+ ++ L+ L + E +LE + LEG+ L + E + + +L+ +
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 1456 QCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEK 1515
+ + R + + + + ++L+ ++++ + + E+
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Query: 1516 LKQLQKLLHSAENEKRVLQERLDTCQASLAE 1546
L+ L+ L + QE + +
Sbjct: 1153 LEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 76.8 bits (189), Expect = 5e-14
Identities = 48/315 (15%), Positives = 125/315 (39%), Gaps = 11/315 (3%)
Query: 802 KAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRT 861
+A + L + + ++ + L ++++ E+ +N + + A+ EE++ R
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEE-KNLLQEKLQAETELYAEAEEMRVRL 918
Query: 862 EEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVG 921
+K LE + ++++ E S++L+ + + ++ ++ QL E ++ +
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 922 ESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRF 981
+ + + + + +K K K L E V + + ++ L K
Sbjct: 979 VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-LTK----- 1032
Query: 982 GDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFV 1041
K + +++ + +K + E+I+ L+ E L E+ L+ + +
Sbjct: 1033 ---LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 1042 ISYLLC-LFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNNRV 1100
++ L L T +++ ++ L+ ++ EDL K ++ + +
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 1101 NKNLEDLVKECEEKE 1115
++ LE L E E+
Sbjct: 1150 SEELEALKTELEDTL 1164
Score = 76.4 bits (188), Expect = 6e-14
Identities = 48/318 (15%), Positives = 132/318 (41%), Gaps = 13/318 (4%)
Query: 727 KLTEEKEQVRAALEKKLHATVKQITEEKD-CELSRLQANLCQLQSHIDKICQQHEDALLR 785
K+T ++E+++A E+ +Q E + EL + LC+ ++ + + Q +
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 786 AEGDKQQALLIAQQDQKAIQDRLSQV------LKELEEEKCTLDRIKRESAGRSEQDRNT 839
AE + + Q+ ++ + + +++ ++L+ EK + + + + E++
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 840 INTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDK 899
L+ + K++++ E++ I+E + + L ER+ L +L L E+K
Sbjct: 971 RQKLQLEKVTADGKIKKM----EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 900 VDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKV 959
+ + + E E + K + + E + +L+ + ++
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 960 ESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDS 1019
+++ + + L ++ +K ++ + + ++ L+++L + R +
Sbjct: 1087 KAQLAKKEEELQAALARLEDE--TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144
Query: 1020 EKVTLQEKCKFLEIEKEK 1037
+K L E+ + L+ E E
Sbjct: 1145 QKRDLSEELEALKTELED 1162
Score = 71.4 bits (175), Expect = 2e-12
Identities = 58/432 (13%), Positives = 160/432 (37%), Gaps = 46/432 (10%)
Query: 118 AHLREMREERIQDLNTAL----------RRLDDERRENEKLRKMNSVYKEQLDEAHHTNE 167
AHL E R+ +I D+ A + +++ E + + + ++ H
Sbjct: 781 AHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWM 840
Query: 168 ALTNDLEKLTTDWTHLREEMAMKE-----KDWIEEEQYFNDYYSSEHARLLALWRDVVDI 222
L + L E A E K+ ++ + +H +L + +
Sbjct: 841 XLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900
Query: 223 KRSFTAMQSATEQDLSKIRSDLNQSTRQMSGACNGLVALSAGSSATNAEKDKLVKENSEL 282
++ T + + E+ ++ + + + + S AEK K+ ++ +L
Sbjct: 901 LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960
Query: 283 KSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQELELLQ 342
+ Q+ ++ + E + +++++ I +E + + + + +++ + L
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK---ERKLLEERVSDLT 1017
Query: 343 NTLRDIARAVIQDAEGKDIPSRPAPLKRHATFSARPSTSIKPSVTFRKETKLATHREQLH 402
L + ++ + K++ + + E +L +
Sbjct: 1018 TNLAE------EEEKAKNLTKLKNKHESMIS---------------ELEVRLKKEEKSRQ 1056
Query: 403 TMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEK 462
++K + ++ +Q+ L +Q+ + KAQLA+ E +A + +E +K+ K
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 463 NKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRG 522
RE+ + L +L+ + ++ + +K L EL+ + ++++
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNK-------AEKQKRDLSEELEALKTELEDTLDTTAT 1169
Query: 523 KEDMNRRLREDL 534
++++ +D
Sbjct: 1170 QQELRGSDYKDD 1181
Score = 70.2 bits (172), Expect = 5e-12
Identities = 57/336 (16%), Positives = 120/336 (35%), Gaps = 24/336 (7%)
Query: 826 KRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTE 885
R E++ + ++ K E E++ L + + L+ + +A
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 886 SEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKY 945
E + K ++ L E R++E E + L+ + + + D
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD-------L 960
Query: 946 AKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKK 1005
+ ++ +K++ EK D + + + + + + L K
Sbjct: 961 EEQLEEEEAARQKLQLEKVTA----------------DGKIKKMEDDILIMEDQNNKLTK 1004
Query: 1006 ELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVT-KDRSD 1064
E E+ DL + +EK K L K K+ +IS L + E + Q K +
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 1065 LSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVLLDLCAR 1124
L + S L + + +A LK + + E LED + + +L +
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 1125 LGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTL 1160
+ +E + + A + E K+D+ +L ++ + L
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
Score = 69.1 bits (169), Expect = 1e-11
Identities = 43/293 (14%), Positives = 111/293 (37%), Gaps = 27/293 (9%)
Query: 1432 QQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETEL 1491
R + +Q K+ L + +ER + + LE++ T L + L L+ + E
Sbjct: 852 VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 1492 RGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRR-- 1549
L + ++++ ++ + EK+ +Q+++ + L E
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Query: 1550 -----------QQVNRLENQ-DDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQ 1597
++ ++E+ ++ L +E K L + + + +A+ ++ + L
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
Query: 1598 EEKYALETKLSQTKAA-ANSQNELEVKEVARAGLESQLRMSQWPSESPMNGGDSEEITKL 1656
+ K E+ +S+ + + + E + LE + E+I +L
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH------------EQIAEL 1079
Query: 1657 CRERSELRNKLENLHDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQAL 1709
+ +EL+ +L +++Q +L E ++ + + + L++ L
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Score = 68.7 bits (168), Expect = 2e-11
Identities = 47/315 (14%), Positives = 109/315 (34%), Gaps = 22/315 (6%)
Query: 36 LRQNSDLQRKLDEESVINRKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELEREAP 95
++ + ++ E +L+ Q + LQ KL + E E R
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR- 917
Query: 96 STSSYLGPLPSTPLPSALDAAQAHLREMREERIQDLNTALRRLDDERRENEKLRKMNSVY 155
L A + L E+ E + R + E +K+++
Sbjct: 918 -----------------LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960
Query: 156 KEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYYSSEHARLLAL 215
+EQL+E + L + + +++ + E + + L
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ-NNKLTKERKLLEERVSDLTTN 1019
Query: 216 WRDVVDIKRSFTAMQSATEQDLSKIRSDLNQSTRQMSGACNGLVALSAGSSATNAEKDKL 275
+ + ++ T +++ E +S++ L + + L SS + + +L
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079
Query: 276 VKENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQ 335
+ +ELK+Q+ + E A + + + LK+I LE+ + + ++ +E +
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED---LESEK 1136
Query: 336 QELELLQNTLRDIAR 350
+ RD++
Sbjct: 1137 AARNKAEKQKRDLSE 1151
Score = 61.4 bits (149), Expect = 2e-09
Identities = 63/352 (17%), Positives = 139/352 (39%), Gaps = 33/352 (9%)
Query: 1054 ELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEE 1113
EL + + + +L L++K + E+ L++K + E+ + L + +E
Sbjct: 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQE 924
Query: 1114 KEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHAFYT 1173
E +L ++ AR+ EER + A +++ D+E +L + +++ + A
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 1174 LSEKEAELARIRAQYDAY-KSMDCHTDRSSDLERYRAAQLHAESLLEAREKSHRQQVNRL 1232
+ + E ++ + Q + K +R SDL A + L + H ++ L
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Query: 1233 ENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERER 1292
E +L + + ++ R+ + +L +Q+A+++ +
Sbjct: 1045 EVRLK-KEEKSRQELEKIKRK--------------------LEGESSDLHEQIAELQAQI 1083
Query: 1293 DDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQS 1352
+LKA + E++ E+++ A + +R L+ L+ L KAA N
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 1353 EAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEK 1404
+ +EEL+ L+ ++ E+ + R S + D +K
Sbjct: 1144 KQKRDLSEELEALKTEL-----------EDTLDTTATQQELRGSDYKDDDDK 1184
Score = 56.0 bits (135), Expect = 1e-07
Identities = 43/314 (13%), Positives = 119/314 (37%), Gaps = 30/314 (9%)
Query: 35 LLRQNSDLQRKLDEESVI---NRKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELE 91
L + + LQ KL E+ + + +Q+ ++ +++A++ + ++R ++L+ E
Sbjct: 890 LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949
Query: 92 REAPSTSSYLGPLPSTPLPSALDAAQAHLREMREE------RIQDLNTALRRLDDERREN 145
++ L L+ +A ++++ E +I+ + + ++D+ +
Sbjct: 950 KKKMQQQMLD-------LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Query: 146 EKLRKMNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYY 205
K RK+ L E +L KL + E+ ++ +++E+
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR----LKKEE------ 1052
Query: 206 SSEHARLLALWRDVVDIKRSFTAMQSATEQDLSKIRSDLNQSTRQMSGACNGLVALSAGS 265
L + R + + + ++++++ L + ++ A L ++
Sbjct: 1053 -KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 266 SATNAEKDKLVKENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEAD 325
+ + +L S+L+ + K+ N + + E +E L LE ++
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE---LEDTLDTTA 1168
Query: 326 QNVLLVEEMQQELE 339
L ++ +
Sbjct: 1169 TQQELRGSDYKDDD 1182
Score = 53.7 bits (129), Expect = 5e-07
Identities = 40/315 (12%), Positives = 118/315 (37%), Gaps = 19/315 (6%)
Query: 1052 EVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLVKEC 1111
E + +Q+ ++++ L +L E RL K ++ E+ + + +E+ +
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 1112 EEKEVVLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHAF 1171
++ + + ++ EE++ A +L+ K + K+ + + +
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 1172 YTLSEKEAELARIRAQYDAYKSMDCHTDRSSDLERYRAAQLHAESLLE---AREKSHRQQ 1228
E ++ + +++ +L + + S LE +E+ RQ+
Sbjct: 1004 KERKLLEERVSDLTTNLAE------EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 1229 VNRLENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEI--VRKGVRNLMQQVA 1286
+ +++ +L+G +S ++ + + ++ L + E+ + + Q
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELK-----AQLAKKEEELQAALARLEDETSQKN 1112
Query: 1287 QIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKA 1346
++ +L++ L+ +++ A + + + + AL+ E LE L T
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE---LEDTLDTTAT 1169
Query: 1347 AANSQSEAMDQKNEE 1361
+ +++
Sbjct: 1170 QQELRGSDYKDDDDK 1184
Score = 34.8 bits (80), Expect = 0.33
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 25/155 (16%)
Query: 34 HLLRQNSDLQRKLDEESVINRKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELERE 93
+ + L+ K + +L+ S+Q+ + KL+ + ++ EL+ +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 94 APSTSSYLGPLPSTPLPSALDAAQAHLREMREERIQDLNTALRRLDDERRENEKLRKMNS 153
L+ ++ ++L AL RL+DE + K
Sbjct: 1085 E-------------------------LKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 154 VYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMA 188
+ + + E+ K L EE+
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154
Score = 31.0 bits (70), Expect = 4.8
Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 25/131 (19%)
Query: 31 DSSHLLRQNSDLQRKLDEESVINRKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELEL 90
+ + + K +EE +LE + + + +L++ + ++ +LE
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE---DLES 1134
Query: 91 EREAPSTSSYLGPLPSTPLPSALDAAQAHLREMREERIQDLNTALRRLDDERRENEKLRK 150
E+ +A + A+ R++ EE ++ L T L+D ++
Sbjct: 1135 EK------------------AARNKAEKQKRDLSEE-LEALKT---ELEDTLDTTATQQE 1172
Query: 151 MNSVYKEQLDE 161
+ + D+
Sbjct: 1173 LRGSDYKDDDD 1183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 93.4 bits (231), Expect = 5e-19
Identities = 93/620 (15%), Positives = 186/620 (30%), Gaps = 161/620 (25%)
Query: 585 DMNEQISKYEITIEAN------DKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVK 638
+ E +Y+ + + + + +Q+ S+ S +E D H+ S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE------ID---HIIMSKDA 60
Query: 639 KEQLEHEVQELLVKQESLKGQVVRLNKELEDT------EKRAQETKASLVQQASGLDADY 692
LL KQE V + +E+ E + Q S + Y
Sbjct: 61 VSGTLRLFWTLLSKQEE---MVQKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRMY 112
Query: 693 QNQISNL-------KKQN---EECVTKLTEEKINLK--------------KQNEECVTKL 728
Q L K N + KL + + L+ K V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT---WVALD 169
Query: 729 TEEKEQVRAALEKKLH-ATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAE 787
+V+ ++ K+ +K + L LQ L ID D +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQ-KLL---YQIDPNWTSRSDHSSNIK 224
Query: 788 GDKQQALLIAQQDQKAIQDRLSQVLKELEEEKC--TLDRIKRESAGRS----------EQ 835
+IQ L ++LK E C L ++ A + +
Sbjct: 225 -----------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 836 DRNTINTLREQLNRTVAKLEELKTRTEEE-KAILER----KISDLKSEREALVTESEELK 890
+ + L ++ T T +E K++L + + DL RE L T
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNP---- 327
Query: 891 VQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADS---NFEKDKYAK 947
LS ++ A +++ ++ + D T + +S E +Y K
Sbjct: 328 --RRLS----------II--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 948 SNKDL---REMVK---KV------ESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLND 995
L + + K D + L K ++ ++ + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEKQPKESTIS--IPS 430
Query: 996 -------QSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCL 1048
+ + +L + ++ I DS+ + ++ Y+ I + L
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF------YSH-IGHHL-- 481
Query: 1049 FQVEVELSQVTKDRSDLSHQLSLLQRK----------KENVVEDLARLKQKYEQSVEMNN 1098
+E + + L++K +++ L +LK Y+ + N+
Sbjct: 482 --KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDND 538
Query: 1099 ----RVNKNLEDLVKECEEK 1114
R+ + D + + EE
Sbjct: 539 PKYERLVNAILDFLPKIEEN 558
Score = 86.4 bits (213), Expect = 6e-17
Identities = 98/666 (14%), Positives = 196/666 (29%), Gaps = 168/666 (25%)
Query: 334 MQQELELLQNTLRDI----ARAVIQDAEGKDIPSRPAPLKRHATFSARPSTSIKPSVTFR 389
M E Q +DI A + + + KD+ P +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-------------------LS 47
Query: 390 KETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKN 449
KE + S D L L + ++ Q E E L N
Sbjct: 48 KEE-----------IDHIIMSKDAVS-----GTLRLFWTLLSKQEEMVQKFVE-EVLRIN 90
Query: 450 IEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRI 509
+ L + E+ + + D++ +N +K N S L L+ L +
Sbjct: 91 YKFL-MSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 510 NSDMDAREVELRGKEDM---------NRRLR-EDLLIANED------LKNAKLAKELLEQ 553
A+ V + G + + + LKN + +LE
Sbjct: 148 RP---AKNVLIDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 554 NKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQ--- 610
+Q LL I+ + RSD S ++ I + EL+RL +
Sbjct: 202 ----LQKLLYQIDPN-----------WTSRSD---HSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 611 ---LASLR--SDKESLEA------ILFDTQSH-----LEQSDVKKEQLEHEVQELLVKQE 654
L L + ++ A IL T+ L + L+H L E
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDE 302
Query: 655 SLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEK 714
+ L+ +D + T + + D N K N + +T + E
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 715 IN------LKKQNEECV-----TKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQA 763
+N +K + + + + + + + + K + S ++
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 764 NLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLD 823
+ I I + + L+ + + + AL ++I D + K + +
Sbjct: 420 QPKESTISIPSI---YLE--LKVKLENEYAL------HRSIVDHY-NIPKTFDSDDLIPP 467
Query: 824 RI-------------KRESAGRSEQDRN----------------TINTLREQLNRTVAKL 854
+ E R R T + T+ +L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 855 EELKTRTEEEKAILERKISDL-----KSEREALVTESEELKVQLHLSEDKVDTVQAQLLE 909
+ K + ER ++ + K E + ++ +L +++ L + +A E
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIALMAED----EAIFEE 582
Query: 910 TARRLK 915
++++
Sbjct: 583 AHKQVQ 588
Score = 86.1 bits (212), Expect = 8e-17
Identities = 89/660 (13%), Positives = 200/660 (30%), Gaps = 157/660 (23%)
Query: 631 HLEQSDVKKEQLEHEVQELL-VKQESLKGQVVRLN-KELEDTEKRA---QETKASLVQQA 685
H D + + +++ +++L V +++ + K+++D K +E ++
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSKEEID-HIIMSK 58
Query: 686 SGLDADYQNQISNLKKQNEECVTKLTEEKIN------LKKQNEECV--TKLTEEKEQVRA 737
+ + L + EE V K EE + + E + +T + R
Sbjct: 59 DAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 738 ALEKKLHATVK-QITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGD----KQQ 792
L K ++ + +L+ L +L+ ++ L+ +G K
Sbjct: 118 RLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPA--------KNVLI--DGVLGSGKT- 164
Query: 793 ALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTI---NTLREQLNR 849
+ V + + +I + + L Q++
Sbjct: 165 -WVALD------------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 850 TVAKLEE----LKTRTEEEKAILERKISDLKSEREAL-----VTESEELKVQLHLSEDKV 900
+ +K R +A L R + K L V ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAW--------NAF 262
Query: 901 DTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVE 960
+ + ++L T R + D L T +
Sbjct: 263 N-LSCKILLTTRFKQVT---------DFLSAAT----------------------TTHIS 290
Query: 961 SEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLD---- 1016
+ T DE + ++ D Q L ++ + S+ E ++ D
Sbjct: 291 LDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 1017 LDSEKV-TLQEKC-KFLE--IEKEKY-NFVI--------SYLLCLFQVEVELSQVTKDRS 1063
++ +K+ T+ E LE ++ + + + LL L +V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-KSDVMVVV 408
Query: 1064 DLSHQLSLLQR-KKENVVE--DLA-RLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVL- 1118
+ H+ SL+++ KE+ + + LK K E ++ + + + +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 1119 LD--LCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHAFYTLSE 1176
LD + +G HL +E ++ R + + F L +
Sbjct: 469 LDQYFYSHIG----------HHLKNIEHPERMTL---------FRMV----FLDFRFLEQ 505
Query: 1177 KEAELARIRAQYDAYKSMDCHTDRSSDLERYRAAQLHAESLLEAREKSHRQQVNRLENQL 1236
K IR A+ + + L+ Y+ + E + + ++E L
Sbjct: 506 K------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Score = 78.4 bits (192), Expect = 2e-14
Identities = 91/677 (13%), Positives = 194/677 (28%), Gaps = 183/677 (27%)
Query: 3 PHDRLKDKMDYSLRDYEDTPLGS-TSHGVDSSHLLRQNSDLQRKLDEESVINRKKLEAYR 61
++ +D +D P + +D H++ + +
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDAVSG--------TLRLFWTLL 72
Query: 62 TSQQQ--QAALVSKLQA--KLL--QYKQRCKELELEREAPSTSSYLGPLPSTPLPSALDA 115
+ Q++ Q + L+ K L K ++ + L +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR--MYIEQRDRLYNDNQV----F 126
Query: 116 AQAHLREMREERIQDLNTALRRLDDER--------------------RENEKLRKM-NSV 154
A+ ++ R + L AL L + + KM +
Sbjct: 127 AKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 155 Y---KEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYYSSE-HA 210
+ + + E L L ++ +WT + + + + S+ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 211 R-LLALWRDVVDIK--RSFTAMQSATEQDLSKIRSDLNQSTRQMSGACNGLVALSAGSSA 267
LL L +V + K +F +L+ C L+ +
Sbjct: 245 NCLLVL-LNVQNAKAWNAF----------------NLS---------CKILL-TTRFKQV 277
Query: 268 TNAEKDKLVKENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQN 327
T+ S +T+ E V+ LL + L+ R ++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDE--------------VKSLLLKY--LDCRPQD---- 317
Query: 328 VLLVEEMQQELELLQNTLRDIARAVIQDAEGKDIPSRPAPLKRHATFSARPSTSIKPSVT 387
L E+ L IA ++ +D + K + +T I+ S+
Sbjct: 318 --LPREVLTTNPRR---LSIIAESI------RDGLATWDNWKH--VNCDKLTTIIESSL- 363
Query: 388 FRKETKLATHREQLHT--MKKQYES-----ADESQYNMSQQVTS-LTSQLDQTKAQLAQV 439
L +K ++ ++ + S + + +
Sbjct: 364 -----------NVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIK-------- 401
Query: 440 GREKEALVKNIEMLRVEKSALEKNKREINEMVESLNS-NLDKVQKNNSRLS---KINESL 495
+ +V ++ + S +EK E S+ S L+ K + + I +
Sbjct: 402 -SDVMVVVN--KLHK--YSLVEKQP---KESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 496 QSEKLFLQNELDRINSDM--------DAREVELRGKEDMNRRLREDLLIANEDLKNAKLA 547
K F ++L D + +E + + R + D + +++ A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 548 KELLEQNKEEMQTL---LAHIEKSKGDVEAEMERLL--LDRSDMNEQISKY--------- 593
+Q L +I + E + +L L + + N SKY
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 594 ----EITIEANDKELQR 606
I EA+ K++QR
Sbjct: 574 AEDEAIFEEAH-KQVQR 589
Score = 62.6 bits (151), Expect = 1e-09
Identities = 99/685 (14%), Positives = 201/685 (29%), Gaps = 197/685 (28%)
Query: 1017 LDSEKVTLQEKCK-----FLEIEKEKYNF--VISYLLCLFQVEVELSQVTKDRSDLSHQL 1069
+D E Q + K F + + ++ V + E E+ + + +S L
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTL 65
Query: 1070 SL---LQRKKENVVEDLAR--LKQKYE---QSVEMNNRVNKNLEDLVKECEEK-----EV 1116
L L K+E +V+ L+ Y+ ++ R + + E ++ +V
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1117 VLLDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIG-STL--------RRIAALR 1167
+R + LL+L +K + + G + + + +
Sbjct: 126 FAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 1168 YHAFY-TLSEKEAELARIRAQYDAYKSMDC-HTDRSSDLERYRAAQLHAESLLEAREKSH 1225
+ F+ L + + +D T RS + L S+ E
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQA--ELRR 236
Query: 1226 RQQVNRLENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEGLI--DV-DPEIVRK---GVR 1279
+ EN L L+ +V + + +
Sbjct: 237 LLKSKPYENCL-----------------------------LVLLNVQNAKAWNAFNLSCK 267
Query: 1280 NLM----QQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKY 1335
L+ +QV D L A T + S T + + L
Sbjct: 268 ILLTTRFKQVT------DFLSAATTT-HISLDHHSMTLTPD--------EVKSLL----- 307
Query: 1336 ALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQG--------- 1386
+ +D + ++L RE + T LS ++E G
Sbjct: 308 ----------------LKYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 1387 --DDKLMKCRESG-ARLD-AEKRALQDELS--RTEARVTKLELQRVALEGDQQRLQMLLQ 1440
DKL ES L+ AE R + D LS A + + L + + + + +++
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 1441 E-----------KET--NLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAG 1487
+ KE+ ++ + + + N L +D N+ S
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI------VDHYNIPKTFDSDD 463
Query: 1488 ETEL------------------RGEIQTLQRNLMDTSLNSQSNCEKLKQLQ-KLLHSAEN 1528
E TL R + L+ + L+ K+ H +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LD-------FRFLEQKIRHDSTA 513
Query: 1529 EKRVLQERLDTCQASLAELR--RQQVNRLENQDDLKAMTQALKREIKDLS-DAHTQESNK 1585
L+T L +L+ + + +N + + A+ + + + +
Sbjct: 514 WNAS-GSILNT----LQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 1586 MAQAQQTMRALQ-EEKYALETKLSQ 1609
+ + AL E++ E Q
Sbjct: 567 LLR-----IALMAEDEAIFEEAHKQ 586
Score = 57.2 bits (137), Expect = 5e-08
Identities = 78/540 (14%), Positives = 153/540 (28%), Gaps = 191/540 (35%)
Query: 1358 KNEELQHL------REKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAE--KRALQD 1409
EE+ H+ L L TL S+ ++ + K E R++ + ++
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTL------LSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 1410 ELSRTEARVTKLELQRVALEGDQQ--------RLQMLLQEKETNLHKLQERCEHQCRNIT 1461
E + QR L D Q RLQ L+ ++ L +L+ +N+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPA-----KNVL 154
Query: 1462 -------GLEERCTSLKTTIDQLNLTLERASAGETELR----------GE-------IQT 1497
G KT + L+ + + + + ++
Sbjct: 155 IDGVLGSG--------KTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 1498 LQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQER---------LD---------- 1538
LQ+ L N S + ++ +HS + E R L + L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 1539 ---TCQ-------ASLAE-LRRQQVNRLENQDDLKAMT---------QALKREIKDLSDA 1578
+C+ + + L + +T + L +DL
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-- 319
Query: 1579 HTQESNKMAQAQQTM--------RALQEE-------KYALETKLSQT-KAAANSQNELEV 1622
+ T ++++ K+ KL+ +++ N E
Sbjct: 320 --------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 1623 KEVAR--------AGLESQLRMSQWPSESPMNGGDSEEITKLCRERS------------- 1661
+++ A + + L W D + + S
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 1662 -----ELRNKLEN---LHDKI----QMLRDQLNSEIKRRQL--YIY-------RDTRAGK 1700
EL+ KLEN LH I + + + ++ L Y Y ++ +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 1701 EMQQLRQALGDSLRTVAHDPAVDALLLEHEANKLDTTALSASTTSSSYPLALPPPRSYRK 1760
M R D R LE K+ + + + + S L + Y+
Sbjct: 489 RMTLFRMVFLD-FR-----------FLE---QKIRHDSTAWNASGSILNT-LQQLKFYKP 532
Score = 36.0 bits (82), Expect = 0.13
Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 32/170 (18%)
Query: 1546 ELRRQQVNRLENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALET 1605
E Q + +D L A + + Q+ K +++ + + K A+
Sbjct: 10 ETGEHQ---YQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 1606 KLSQTKAAANSQNELEVKEVARAGLESQLRMS-QWPSESPMNGGDSEEITKLCRERSELR 1664
L + Q E+ V + +E LR++ ++ I R+ S +
Sbjct: 64 TLRLFWTLLSKQEEM----VQKF-VEEVLRINYKFLMSP---------IKTEQRQPSMMT 109
Query: 1665 NKLENLHDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQALGDSLR 1714
D++ N + + R + +LRQAL LR
Sbjct: 110 RMYIEQRDRLY------NDNQVFAKYNVSR----LQPYLKLRQAL-LELR 148
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 72.4 bits (178), Expect = 1e-12
Identities = 46/261 (17%), Positives = 104/261 (39%), Gaps = 19/261 (7%)
Query: 767 QLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIK 826
++ + L+R + ++ + IQ + L + + +
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQM----MLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 827 RESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTES 886
+ R + + L+ + R+V + ++L E + L+RKI + E ++L+ +
Sbjct: 893 LQCCYRRMMAKRELKKLKIE-ARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951
Query: 887 EELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYA 946
L++ +K+ + +L + K A N SL++++ + L + EK
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK---- 1007
Query: 947 KSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKE 1006
K + E K + E + E + EK+ L +++DQ+ ++ ++
Sbjct: 1008 ---KTIEEWADKYKHETEQLVSELKEQNTLLK-----TEKEELNRRIHDQAKEITETMEK 1059
Query: 1007 LLQAE--QIRLDLDSEKVTLQ 1025
L E Q+ LDL+ E++ Q
Sbjct: 1060 KLVEETKQLELDLNDERLRYQ 1080
Score = 69.4 bits (170), Expect = 1e-11
Identities = 45/257 (17%), Positives = 93/257 (36%), Gaps = 15/257 (5%)
Query: 448 KNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELD 507
K + +R AL+ R + + + + + L+ +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV- 891
Query: 508 RINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEK 567
++ + M +R + L I ++ K LE ++Q + K
Sbjct: 892 ---------YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK 942
Query: 568 SKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFD 627
+ +M L + S E++ + +++E + ++ SL+ + L L
Sbjct: 943 EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 628 TQS---HLEQSDVK-KEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQET-KASLV 682
TQ+ +E+ K K + E V EL + LK + LN+ + D K ET + LV
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062
Query: 683 QQASGLDADYQNQISNL 699
++ L+ D ++
Sbjct: 1063 EETKQLELDLNDERLRY 1079
Score = 66.7 bits (163), Expect = 6e-11
Identities = 45/271 (16%), Positives = 93/271 (34%), Gaps = 16/271 (5%)
Query: 1357 QKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRA--LQDELSRT 1414
QK + + +R++ + + Q + R + E ++ +Q +
Sbjct: 823 QKFQRMYVVRKRYQCMR-----DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW 877
Query: 1415 EARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTI 1474
ARV + + +M+ + + L E + GLE + L+ I
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937
Query: 1475 DQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQ 1534
D+ N + L T L +S+ E+L+ ++ +A N LQ
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 1535 ERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMR 1594
E + + L + + ++ E D K T+ L E+K+ + E ++ ++
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL--NRRIHD 1048
Query: 1595 ALQEEKYALETKLSQTKAAANSQNELEVKEV 1625
+E +E KL + E
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 66.3 bits (162), Expect = 8e-11
Identities = 51/320 (15%), Positives = 115/320 (35%), Gaps = 52/320 (16%)
Query: 448 KNIEMLRVEKSA--LEKNKR--EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQ 503
LR ++A ++K +R + + + + +Q N+ +
Sbjct: 808 CYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKS 867
Query: 504 NELDRINSDMDAREVELRG-KEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLL 562
+ + AR R K + + ++A +LK K+ +E+ K+ L
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL- 926
Query: 563 AHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLE 622
E ++ +++ + + E+++ EIT ++L+ E+L + ++
Sbjct: 927 ---ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983
Query: 623 AILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLV 682
+ L+ E+ + L KEL T+ +
Sbjct: 984 N--------------RVLSLQEEIAK--------------LRKELHQTQTEKK------- 1008
Query: 683 QQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKK 742
+ K + E+ V++L E+ LK + EE ++ ++ +++ +EKK
Sbjct: 1009 --------TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Query: 743 LHATVKQITEEKDCELSRLQ 762
L KQ+ + + E R Q
Sbjct: 1061 LVEETKQLELDLNDERLRYQ 1080
Score = 65.1 bits (159), Expect = 2e-10
Identities = 36/256 (14%), Positives = 95/256 (37%), Gaps = 14/256 (5%)
Query: 528 RRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMN 587
+ +R+ + L+ + + +E + I+K A + ++ +
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSII---IQKHVRGWLARVHYHRTLKAIVY 892
Query: 588 EQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQ 647
Q + + K+L+ + + LE + Q +++ + + + L ++
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 648 ELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECV 707
L + + + +L ++E +E K + L + L + E
Sbjct: 953 NL---EITYSTETEKLRSDVERLRMSEEEAKN-ATNRVLSLQEEIAKLRKELHQTQTE-K 1007
Query: 708 TKLTEEKINLKKQNEECVTKLTEEKEQVRAA---LEKKLHATVKQITEEKDCELSRLQAN 764
+ E K + E+ V++L E+ ++ L +++H K+ITE + +L
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME---KKLVEE 1064
Query: 765 LCQLQSHIDKICQQHE 780
QL+ ++ +++
Sbjct: 1065 TKQLELDLNDERLRYQ 1080
Score = 64.0 bits (156), Expect = 4e-10
Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 10/253 (3%)
Query: 714 KINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHID 773
K ++ + VR + L K I +K + + + I
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLR-EHKSIIIQKHVRGWLARVHYHRTLKAIV 891
Query: 774 KICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRS 833
+ + + + E K + + + K + L + +L+ + ++ +
Sbjct: 892 YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS----L 947
Query: 834 EQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQL 893
+ N + + E +EEE ++ L+ E L E + + +
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 894 HLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLR 953
E+ D + + + LKE L+ + + + D K+ K L
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQN---TLLKTEKEELNRRIHDQ--AKEITETMEKKLV 1062
Query: 954 EMVKKVESEKRDQ 966
E K++E + D+
Sbjct: 1063 EETKQLELDLNDE 1075
Score = 62.0 bits (151), Expect = 1e-09
Identities = 38/231 (16%), Positives = 93/231 (40%), Gaps = 21/231 (9%)
Query: 1273 IVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQE 1332
I++K VR + +V + + Q R + +E K+ +++ ++
Sbjct: 869 IIQKHVRGWLARVHYHRTLKAIV--YLQCCYRRMMA-----KRELKKLKIEARSVERYKK 921
Query: 1333 EKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMK 1392
LE K+ Q + +D++N+E + L EK+ LE+T S +E+ ++L
Sbjct: 922 LHIGLENKIMQLQ-------RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 1393 CRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQER 1452
E +LQ+E+++ + + + ++ +E + + ++ + L +
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Query: 1453 CEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGET-ELRGEIQTLQRNL 1502
+ + EE + ++ T+E+ ET +L ++ +
Sbjct: 1035 LKTE------KEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 57.0 bits (138), Expect = 6e-08
Identities = 47/260 (18%), Positives = 95/260 (36%), Gaps = 27/260 (10%)
Query: 1433 QRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELR 1492
Q ++ + L R ++Q L E K+ I Q ++ A
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMM----LREH----KSIIIQKHVRGWLARVHYHRTL 887
Query: 1493 GEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQV 1552
I LQ + ++ +KLK + + + L+ ++ Q + E ++
Sbjct: 888 KAIVYLQCCYR--RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 1553 NRLENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKA 1612
+ LE ++L+ +++ + + A + +LQEE L +L QT+
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 1613 AANSQNELEVKEVAR-AGLESQLRMSQWPSESPMNGGDSEEITKLCRERSELRNKLENLH 1671
+ E K L S+L+ E+ T L E+ EL ++ +
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELK---------------EQNTLLKTEKEELNRRIHDQA 1050
Query: 1672 DKI-QMLRDQLNSEIKRRQL 1690
+I + + +L E K+ +L
Sbjct: 1051 KEITETMEKKLVEETKQLEL 1070
Score = 56.7 bits (137), Expect = 7e-08
Identities = 34/268 (12%), Positives = 97/268 (36%), Gaps = 23/268 (8%)
Query: 1273 IVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKD---LSDAHTQESNKMAQAQQTMRA 1329
+VRK + + ++ + + + H + +T++A
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 1330 LQEEKYALETKLSQTKA-AANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDD 1388
+ + +++ + ++ ++++ + L K++ L+ + ++E +
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 1389 KLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHK 1448
K+ + + + R+ + L +E + ++L+ + +L+ L + +T
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Query: 1449 LQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLN 1508
++E + K +QL L+ T L+ E + L R + D +
Sbjct: 1010 IEEWAD--------------KYKHETEQLVSELKEQ---NTLLKTEKEELNRRIHDQAKE 1052
Query: 1509 SQSNCEKL--KQLQKLLHSAENEKRVLQ 1534
EK ++ ++L +E+ Q
Sbjct: 1053 ITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 56.3 bits (136), Expect = 9e-08
Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 12/170 (7%)
Query: 389 RKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVK 448
R + L Q + + +++ SL +++ + + + + V+
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDE---QNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 449 NIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDR 508
+ M E + E + L L + Q + + + + E L +EL
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030
Query: 509 INSDMDAREVELRGK---------EDMNRRLREDLLIANEDLKNAKLAKE 549
N+ + + EL + E M ++L E+ DL + +L +
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 54.7 bits (132), Expect = 3e-07
Identities = 29/222 (13%), Positives = 81/222 (36%), Gaps = 17/222 (7%)
Query: 598 EANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLK 657
E +Q+ + +L+AI+ Q + K+E + L +
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIV-YLQCCYRRMMAKRELKK------LKIEARSV 916
Query: 658 GQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINL 717
+ +L+ LE+ + Q ++ L +++NL+ KL + L
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE----KMNNLEITYSTETEKLRSDVERL 972
Query: 718 KKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQ 777
+ EE + +L++++ K++ + + E ++ + + +++
Sbjct: 973 RMSEEE-----AKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYKHETEQLVS 1026
Query: 778 QHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEK 819
+ ++ + +K++ K I + + + L E ++
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Score = 54.3 bits (131), Expect = 3e-07
Identities = 58/315 (18%), Positives = 107/315 (33%), Gaps = 54/315 (17%)
Query: 34 HLLRQNSDLQRKLDEESVINR-KKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELER 92
H R + R+ +I + +++ R Q LQA L Y R K + R
Sbjct: 804 HQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR 863
Query: 93 EAPST---SSYLGPLPSTPLPSALDAA---QAHLREMREERIQD-LNTALRRLDDERREN 145
E S G L L A Q R M +R L R ++ ++ +
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH 923
Query: 146 EKLRKMNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYY 205
L + ++DE + ++L + L ++ E++ + E+
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE----- 978
Query: 206 SSEHARLLALWRDVVDIKRSFTAMQSATEQDLSKIRSDLNQSTRQMSGACNGLVALSAGS 265
++ T + +++++K+R +L+Q+
Sbjct: 979 -----------------AKNATNRVLSLQEEIAKLRKELHQTQT---------------- 1005
Query: 266 SATNAEKDKLVKENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEAD 325
EK + + + K + L SE K + EEL +RIH + E
Sbjct: 1006 -----EKKTIEEWADKYKHETEQLVSELKEQNTLLKTE---KEELNRRIHDQAKEITETM 1057
Query: 326 QNVLLVEEMQQELEL 340
+ L+ E Q EL+L
Sbjct: 1058 EKKLVEETKQLELDL 1072
Score = 45.5 bits (108), Expect = 2e-04
Identities = 39/309 (12%), Positives = 100/309 (32%), Gaps = 33/309 (10%)
Query: 56 KLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELEREAPSTSSYLGPLPSTPLPSALDA 115
LE R + + A + ++Q + + R K + + R A + Y+
Sbjct: 758 YLEKIRADKLRAACI--RIQKTIRGWLMRKKYMRMRRAAITIQRYV----------RGHQ 805
Query: 116 AQAHLREMREERIQDLNTALRRLDDERRENEKLRKMNSVYKEQLDEAHHTNEALTNDLEK 175
A+ + +R R + +R+ R+ + +R + L
Sbjct: 806 ARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRG-----------YLV 854
Query: 176 LTTDWTHLREEMAMKEKDWIEEEQYFNDYYSSEHA--RLLALWRDVVDIKRSFTAMQSAT 233
LRE ++ + + Y+ + A L +R ++ + A
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEAR 914
Query: 234 EQDL-----SKIRSDLNQSTRQMSGACNGLVALSAGSSATNAEKDKLVKENSELKSQVTV 288
+ + + + Q R++ +L + ++ ++ +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 289 LKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQELELLQNTLRDI 348
+ E N +E + +L K +H + + ++ ++ + E E L + L++
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE---WADKYKHETEQLVSELKEQ 1031
Query: 349 ARAVIQDAE 357
+ + E
Sbjct: 1032 NTLLKTEKE 1040
Score = 42.8 bits (101), Expect = 0.001
Identities = 26/168 (15%), Positives = 62/168 (36%), Gaps = 20/168 (11%)
Query: 32 SSHLLRQNSDLQRKLDEESVINRKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELE 91
L + LQRK+DE++ + LE + + KL++ + + + +E +
Sbjct: 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982
Query: 92 REAPSTSSYLGPLPSTPLPSALDAAQAHLREMREERIQDLNTALRRLDDE-RRENEKLRK 150
+ + Q + ++R+E + T + +++ + + +
Sbjct: 983 TN------------------RVLSLQEEIAKLRKE-LHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 151 MNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEE 198
+ S KEQ E L + + T E+ ++E +E +
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Score = 39.3 bits (92), Expect = 0.012
Identities = 32/239 (13%), Positives = 84/239 (35%), Gaps = 15/239 (6%)
Query: 1002 SLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKD 1061
+L + L + ++ L K + +K + + Y+ + ++ L Q ++
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL-QCCYRRMMAKRE 905
Query: 1062 RSDLSHQ---LSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEVVL 1118
L + + ++ + + +L++K ++ + + + + +L + L
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 1119 LDLCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHAFYTLSEKE 1178
RL +EE + ++ +L L+ + +L + + I + +
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025
Query: 1179 AELARIRAQYDAYKSMDCHTDRSSDLERYRAAQLHAESLLEAREKSHRQQVNRLENQLD 1237
+EL +L R Q + + E EK ++ +LE L+
Sbjct: 1026 SELKEQNTLLKT---------EKEELNRRIHDQA--KEITETMEKKLVEETKQLELDLN 1073
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 6e-10
Identities = 104/655 (15%), Positives = 191/655 (29%), Gaps = 240/655 (36%)
Query: 612 ASLRS---DKESLE-AILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKEL 667
S R SLE +L T S QL+ + ++L
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASF-----FIASQLQEQFNKILP---------------- 42
Query: 668 EDTEKRAQE----TKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEE 723
E TE A + T A LV + +S+L + ++ Q ++
Sbjct: 43 EPTEGFAADDEPTTPAELV-------GKFLGYVSSLVEPSK-------------VGQFDQ 82
Query: 724 CVTKLTEEKEQVRAALEKK-LHATVKQITEEKDCELSR--------LQANLCQLQSHIDK 774
+ E E LE +HA ++ +E D L + + A + + DK
Sbjct: 83 VLNLCLTEFE--NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDK 139
Query: 775 ICQQHEDALLRAEGDKQQALLIAQ-QDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRS 833
+ AL RA G+ A L+A Q D +EL
Sbjct: 140 ---KSNSALFRAVGEG-NAQLVAIFGGQGNTDD----YFEEL------------------ 173
Query: 834 EQDR-NTINTLREQLNRTVAK-LEELKTRTEEEKAILERKISDLKS--EREALVTESEEL 889
+D T + L L + A+ L EL T + + + + + ++ E + + + L
Sbjct: 174 -RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYL 231
Query: 890 K-----------VQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTH---- 934
+QL A + TA+ L GE LR L H
Sbjct: 232 LSIPISCPLIGVIQL-----------AHYVVTAKLLG--FTPGE-LRSYLKGATGHSQGL 277
Query: 935 -------LADS--NFEKDKYAKSNKDLREM------------VKKVESEKRDQARTIDEG 973
DS +F + K + + + + + +EG
Sbjct: 278 VTAVAIAETDSWESF----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 974 -----LQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKC 1028
L ++ + ++ +++ + +++N L +Q+ + L
Sbjct: 334 VPSPML---SIS--NLTQEQVQDYV-NKTN------SHLPAGKQVEISL----------- 370
Query: 1029 KFLEIEKEKYN----FVIS------YLLCLF-----------QVEVELSQVTKDR-SDLS 1066
N V+S Y L L Q + S+ R S
Sbjct: 371 ---------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE----RKLKFS 417
Query: 1067 HQ-L--------SLLQRKKENVVEDLARLKQKYEQSVEMNNRV--NKNLEDLVKECEEKE 1115
++ L LL + + +DL + + ++ V + DL
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK-DIQIPVYDTFDGSDL---RVLSG 473
Query: 1116 VVLLDLCARLGGAEERV------RASSAHLLQLEASKKDVEHKLSSIGSTLRRIA 1164
+ + + V + + H+L S +G R
Sbjct: 474 SISERIVDCI--IRLPVKWETTTQFKATHILDFGPG------GASGLGVLTHRNK 520
Score = 62.4 bits (151), Expect = 1e-09
Identities = 103/571 (18%), Positives = 157/571 (27%), Gaps = 208/571 (36%)
Query: 95 PSTSSYLGPL-PSTPLPSALDAAQAHLREMREERIQDLNTALRRL--DDE---------- 141
P T S+ G L +P+A +++E+ + L DDE
Sbjct: 8 PLTLSH-GSLEHVLLVPTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 142 -------RRENEKLRKMNSVYKEQLDEAHHTNEAL-TNDLEKLTTDWTHLREEMAMKEKD 193
E K+ + + V L E + L ND+ L + +K K+
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 194 WIEEEQYFNDYYSSEHARLLALWRDVVDIKRSFTAMQSATEQDLSKIRSDLNQSTRQMSG 253
I+ +Y AR++A KR F K S L ++ G
Sbjct: 122 LIK------NYI---TARIMA--------KRPFD----------KKSNSALFRAVG--EG 152
Query: 254 ACNGLVALSAGSSATNAEKDKLVKENSELKSQVTVLKSENNAMANESKQKEERVEELLKR 313
LVA+ G Q N ++ EEL
Sbjct: 153 N-AQLVAIFGG--------------------Q------GNT---------DDYFEELRDL 176
Query: 314 IHTLEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQDAEGKDI------PSRPAP 367
T V + L++ E L +R A +G +I PS P
Sbjct: 177 YQTYHVLVGD------LIKFSA---ETLSELIRTTLDAEKVFTQGLNILEWLENPS-NTP 226
Query: 368 ----LKRHATFS--------------ARPSTSIKPSVTFRKETK-LATHREQLHT----- 403
L S P R K H + L T
Sbjct: 227 DKDYL-LSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIA 284
Query: 404 MKKQYESADESQYNM----------SQQVTSLTSQLDQTKAQLAQVGREKEA----LVKN 449
+ES S + TS L + + + E + N
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISN 343
Query: 450 IEMLRVEKSALEKNKR-------EI---N---EMV-----ESL---NSNLDKVQKNNSRL 488
+ +V+ + N EI N +V +SL N L K K S L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-KAPSGL 402
Query: 489 --SKINESLQSEKL-----FL-----------QNELDRINSDMDAREVELRGKEDMNRRL 530
S+I S KL FL D IN D+ V K
Sbjct: 403 DQSRIPFS--ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK------- 453
Query: 531 REDLLIA------NEDLKNAK--LAKELLEQ 553
D+ I DL+ +++ +++
Sbjct: 454 --DIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 61.2 bits (148), Expect = 4e-09
Identities = 72/509 (14%), Positives = 139/509 (27%), Gaps = 175/509 (34%)
Query: 1365 LREKVLT---LELTLSNVSEEK----SQGDDKLMKCRESGARLDAEKRALQDELSRTEAR 1417
R L+ LE L V SQ ++ K E A DE +
Sbjct: 6 TRPLTLSHGSLEHVLL-VPTASFFIASQLQEQFNKILPE----PTEGFAADDEPT----- 55
Query: 1418 VTKLEL-----QRVALEGDQQR-------LQMLLQE------KETNLHKLQERCEHQCRN 1459
T EL V+ + + L + L E + ++H L + + N
Sbjct: 56 -TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE--N 112
Query: 1460 ITGLEERCTSLKTTIDQLNLT------------LERASAGETEL------RGEIQT---- 1497
T L + +K I + G +L +G
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 1498 LQRNLMDTSLNSQSNCEKL-----KQLQKLLHSAENEKRVLQERLD-------------- 1538
L R+L T L + L +L+ + + ++V + L+
Sbjct: 173 L-RDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 1539 ----TCQASL------------AELRRQQVNRLENQDDLKAMTQALKREIKDL------S 1576
+ S + E + LK T + L +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH----SQGLVTAVAIA 284
Query: 1577 DAHTQESNKMAQAQQTMRAL-------QEE--KYALETKLSQTKAAANSQNE----LEVK 1623
+ + ES ++ + L E +L + + + N++ L +
Sbjct: 285 ETDSWES-FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSIS 342
Query: 1624 EVARAGLESQLRM--SQWPSESPM-----NGGDSEEIT----KLCRERSELRN------- 1665
+ + ++ + S P+ + NG + ++ L LR
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 1666 ------------KLEN-------------LHDKIQMLRDQL---NSEIKRRQLYI--YRD 1695
K N L ++ L N + + I Y D
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-D 461
Query: 1696 TRAGKEMQQLRQALGDSL-RTVAHDPAVD 1723
T G +++ L ++ + + + P V
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLP-VK 489
Score = 58.9 bits (142), Expect = 2e-08
Identities = 86/545 (15%), Positives = 154/545 (28%), Gaps = 187/545 (34%)
Query: 11 MD-YSLRDYEDTPL----GSTSHGVD---SSHL----LRQNSDLQRKL---------DEE 49
MD YS R PL GS H + +S L++ + L D+E
Sbjct: 1 MDAYSTR-----PLTLSHGSLEHVLLVPTASFFIASQLQE--QFNKILPEPTEGFAADDE 53
Query: 50 --SVINRKKLE---------AYRTSQQQQAALVSKLQAKLLQYKQRC---KEL-----EL 90
+ E + + L L +++ ++ +L
Sbjct: 54 PTTPA-----ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 91 EREAPST--------SSYLG-------PLPSTPLPSAL-DAAQAHLREMREERI------ 128
+E +T +Y+ P SAL A ++
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSALFRAVGE-----GNAQLVAIFGG 162
Query: 129 Q-DLNTALRRLDDERRENEKLRKMNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEM 187
Q + + +E LR + Y + + + ++L + T D + +
Sbjct: 163 QGNTDDYF----EE------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ- 211
Query: 188 AMKEKDWIEEEQYF--NDYYSSEHARLLALWRDVVDIKRSF---TAMQSA----TEQDLS 238
+ +W+E DY S I S +Q A T + L
Sbjct: 212 GLNILEWLENPSNTPDKDYLLS--------------IPISCPLIGVIQLAHYVVTAKLLG 257
Query: 239 KIRSDLNQSTRQMSGACNGLVALSAGSSATNAEK-DKLVKENSE------LKSQVTV-LK 290
+L + +G GLV A + + E V++ ++
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 291 SENNAMANESKQKEE-------RVEELLKRIHTLEARVEEADQNVLLVEEMQ-------- 335
S ++ +S + E + L + ++ V + N L Q
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKT--NSHLPAGKQVEISLVNG 373
Query: 336 ----------QELELLQNTLRDIARAVIQDAEGKD---IPSRPAPLKRHATFSAR--PST 380
Q L L TLR G D IP +R FS R P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKA-----PSGLDQSRIPFS----ERKLKFSNRFLPVA 424
Query: 381 SIKPSVTFRKETKL---ATHR--EQLHTMKKQYESAD--------ESQYNMSQQVTSLTS 427
S P F + L A+ + L + + D ++ S++
Sbjct: 425 S--P---F--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 428 QL-DQ 431
++ D
Sbjct: 478 RIVDC 482
Score = 57.0 bits (137), Expect = 7e-08
Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 83/284 (29%)
Query: 110 PSA---LDAAQAHLREMREERIQDL---N----TALRRLDDERRENEKLRKMNSVYKEQL 159
+A + A H ++ I D+ N T + +R E M +++ +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM--IFETIV 1697
Query: 160 DEAHHTNEALTNDLEKLTT-DWTHLRE---------------EMA----MKEKDWIEEEQ 199
D T + E T+ + + E A +K K I +
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 200 YFNDY-------YS--SEHARLLALWRDVVDI--KRSFTAMQSATEQDLSKIRSDLNQST 248
F Y+ + A ++++ +V++ R MQ A +D +L +S
Sbjct: 1758 TF---AGHSLGEYAALASLADVMSI-ESLVEVVFYRG-MTMQVAVPRD------ELGRSN 1806
Query: 249 RQMSGACN-GLVALSAGSSATNAEKDKLVKENSEL--------KSQVTVLKSENNAMANE 299
M A N G VA S A +++ K L ++Q V + A+
Sbjct: 1807 YGM-IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL--- 1862
Query: 300 SKQKEERVEELL-----KRIHTLEARVEEADQNVLLVEEMQQEL 338
+ V +L ++I +E + L +EE++ L
Sbjct: 1863 -----DTVTNVLNFIKLQKIDIIELQKS------LSLEEVEGHL 1895
Score = 54.7 bits (131), Expect = 3e-07
Identities = 103/619 (16%), Positives = 187/619 (30%), Gaps = 222/619 (35%)
Query: 247 STRQMSGACNGLVALSAGSSATNAEKDKLVKEN-----SELKSQVTVLKSENNAMANESK 301
STR ++ LS GS E LV S+L+ Q K +
Sbjct: 5 STRPLT--------LSHGS----LEHVLLVPTASFFIASQLQEQFN--KILPEPTEGFAA 50
Query: 302 QKEER-VEELLKR-IHTLEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQDAEGK 359
E EL+ + + + + VE + Q ++L L + ++ G
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVG--------QFDQVLNLCLTEFENCYLE---GN 99
Query: 360 DIPSRPAPLKRHATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMS 419
DI H +A+ ++ KE + + K+ ++ S
Sbjct: 100 DI---------H-ALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNS----- 143
Query: 420 QQVTSLTSQLDQTKAQLA-----QVGREKEALVKNIEMLRVEKSALEKNKREI----NEM 470
+L + + AQL Q G N + E L R++ + +
Sbjct: 144 ----ALFRAVGEGNAQLVAIFGGQ-G--------NTDDYFEE---L----RDLYQTYHVL 183
Query: 471 VESLNSNLDKVQKNNSRLSKINESLQSEKLF---------LQNELDRINSD-MDAREV-- 518
V L + + S L + +L +EK+F L+N + + D + + +
Sbjct: 184 VGDL---IKFSAETLSELIR--TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 519 ---------------ELRGK--EDMNRRLR------EDLLIANEDLKNAKLAK----ELL 551
+L G ++ L+ + L+ A +A+ E
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA------VAIAETDSWESF 292
Query: 552 EQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQL 611
+ + T+L I G V E + + L+ E +
Sbjct: 293 FVSVRKAITVLFFI----G-VRC------------YEAYPNTSLPPSILEDSLEN-NEGV 334
Query: 612 AS----LRS-DKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLV---KQ-------ESL 656
S + + +E ++ + T SHL + V+ LV K +SL
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAG-------KQ-VEISLVNGAKNLVVSGPPQSL 386
Query: 657 KGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKIN 716
G LN L + KA SGLD Q++I +E K+
Sbjct: 387 YG----LNLTLR-------KAKAP-----SGLD---QSRI------------PFSERKLK 415
Query: 717 ----------------LKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSR 760
L ++ L + A K + V + D L
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA---KDIQIPVYDTFDGSD--LRV 470
Query: 761 LQANLCQLQSHIDKICQQH 779
L ++ + +D I +
Sbjct: 471 LSGSI--SERIVDCIIRLP 487
Score = 44.3 bits (104), Expect = 4e-04
Identities = 60/377 (15%), Positives = 108/377 (28%), Gaps = 179/377 (47%)
Query: 187 MAMKEKDWIEEEQYFNDYY-SSEHARLLALW---------------RDVV---------- 220
M M D Y +S+ A+ +W D+V
Sbjct: 1631 MGM-------------DLYKTSKAAQ--DVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 221 -------DIKRSFTAMQSATEQD----LSKIRSDLNQSTRQMS-GACNGL--------VA 260
I+ +++AM T D KI ++N+ + + + GL A
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 261 LSAGSSATNAEKDKLVKENSELKSQVTVLKSE-----NNAMANESKQKEERVEELLKRIH 315
L+ A LKS+ + A H
Sbjct: 1736 LTLMEKA-----------------AFEDLKSKGLIPADATFAG----------------H 1762
Query: 316 TL-E--ARVEEADQNVLLVEEMQQELELLQNTLR--DIARAVIQDAEGKDIPSRPAPLKR 370
+L E A AD V+ +E + +E++ R + AV +D G+
Sbjct: 1763 SLGEYAALASLAD--VMSIESL---VEVVF--YRGMTMQVAVPRDELGRS---------N 1806
Query: 371 HATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQ-----YNMS-QQ-VT 423
+ + P + S + +E L + ++ YN+ QQ V
Sbjct: 1807 YGMIAINPG-RVAASFS----------QEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 424 SLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQK 483
+ G + AL+ + LN K+QK
Sbjct: 1856 A---------------G---------------DLRALDT-------VTNVLNFI--KLQK 1876
Query: 484 NNSRLSKINESLQSEKL 500
+ ++ +SL E++
Sbjct: 1877 --IDIIELQKSLSLEEV 1891
Score = 44.3 bits (104), Expect = 5e-04
Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 91/240 (37%)
Query: 1304 REIKDLSDAHTQESNKMA--QAQQTMRALQEE--KYALET---KLSQTKAAANSQ----- 1351
+ I++ A E+ + ++ + + E Y + LS T +Q
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---QFTQPALTL 1738
Query: 1352 -SEAMDQKNEELQHLREK-------------------------VLTLELTLSNVSEEKSQ 1385
+A + L+ K V+++E +
Sbjct: 1739 MEKAA------FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV--------- 1783
Query: 1386 GDDKLMKCRESGARLDAEKRAL-QDELSRTEARVTKLELQRVALEGDQQRLQMLLQE--K 1442
+++ R G + A+ +DEL R+ + + RVA Q+ LQ +++ K
Sbjct: 1784 ---EVVFYR--G---MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 1443 ETNLHKLQERCE---HQCRN----ITG----LEERCTSLKT----TIDQLNL----TLER 1483
T E + N G L+ L ID + L +LE
Sbjct: 1836 RTG-----WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 41.6 bits (97), Expect = 0.003
Identities = 87/648 (13%), Positives = 182/648 (28%), Gaps = 219/648 (33%)
Query: 361 IPSRPAPLKRHATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQ 420
+RP L H S + P T QL ++Q+
Sbjct: 4 YSTRPLTLS-HG--SLEHVLLV-P-------TASFFIASQL---QEQFNKIL-------P 42
Query: 421 QVTSLTSQLDQTKAQLAQVGREKEALVKNIEML--RVEKSALEKNKREINEMVESLNSNL 478
+ T + D+ E + K + + VE S ++ + + LN L
Sbjct: 43 EPTEGFAADDEPTTPA-------ELVGKFLGYVSSLVEPS-------KVGQFDQVLNLCL 88
Query: 479 DKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIAN 538
+ E +L+ D+ A +L + D ++L+
Sbjct: 89 TEF----------------ENCYLEGN------DIHALAAKLLQENDTTLVKTKELI--- 123
Query: 539 EDLKNAKLAKELLEQ--NKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEI- 595
KN A+ + ++ +K+ L + + + I
Sbjct: 124 ---KNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--------------------VAIF 160
Query: 596 ----TIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLV 651
+ +EL+ L + L D L + E L ++ +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGD-------LIKFSA---------ETLSELIRTT-L 203
Query: 652 KQESLKGQVVRLNKELEDTEKR-AQETKAS---------LVQQASGLDADYQNQISNLKK 701
E + Q + + + LE+ ++ S ++Q A Y + K
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-----Y---VVTAK- 254
Query: 702 QNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRL 761
+ T ++ + T + + A+ A + E
Sbjct: 255 -----LLGFTPGELR------SYLKGATGHSQGLVTAV---AIAETD--SWE---SFFVS 295
Query: 762 QANLCQLQSHIDKICQQH-----------EDALLRAEGDKQQALLIAQQDQKAIQDRLSQ 810
+ I C + ED+L EG L I+ Q+ +QD +++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 811 VLKELEEEKCTLDRIKRESAGRSEQDRNTINTLR--------EQLNRTVAKLEELKTRTE 862
L K ++ +N + + L L + K +
Sbjct: 356 TNSHLPAGK----QV---EISL-------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 863 EEKA-IL--ERKI--------------SD-LKSEREALVTESEELKVQLHLSEDKV---D 901
+++ I ERK+ S L + + + + V + + ++ D
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 902 TVQAQLLETARRLKE-AENVGESLRKDLL-----------DTKTHLAD 937
T L+ + ++ E + ++ TH+ D
Sbjct: 462 T------FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Score = 40.4 bits (94), Expect = 0.006
Identities = 52/375 (13%), Positives = 103/375 (27%), Gaps = 152/375 (40%)
Query: 513 MD-------AREVELRGKEDMNRRLREDL--LIANEDLKNAKLAKELL-----EQNKEEM 558
MD A++V + ++ I + + N L E+ K
Sbjct: 1633 MDLYKTSKAAQDV----WNRADNHFKDTYGFSILDIVINNPV---NLTIHFGGEKGKRIR 1685
Query: 559 QTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQ-EQLASLRSD 617
+ A I ++ D + + E++ ++NE + Y T + L Q Q A
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIF---KEINEHSTSY--TFRSEKGLLSATQFTQPALT--- 1737
Query: 618 KESLEAILFDTQSHLEQSDVKKEQLE--------HEVQELLVKQESLKGQVVRLNKE--- 666
+E F D+K + L H SL G E
Sbjct: 1738 --LMEKAAF--------EDLKSKGLIPADATFAGH----------SL-G-------EYAA 1769
Query: 667 ---------LEDT----EKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEE 713
+E R +Q A D ++ + ++E
Sbjct: 1770 LASLADVMSIESLVEVVFYRGM-----TMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 714 KINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANL-CQLQSHI 772
+ + V ++ + + E+ N
Sbjct: 1825 AL------QYVVERVGKRTGWL--------------------VEI----VNYNV------ 1848
Query: 773 DKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGR 832
E QQ + A D +A+ D ++ VL ++ +K + ++ +S
Sbjct: 1849 --------------EN--QQ-YVAAG-DLRAL-DTVTNVLNFIKLQKIDIIELQ-KSL-- 1886
Query: 833 SEQDRNTINTLREQL 847
++ + L
Sbjct: 1887 ------SLEEVEGHL 1895
Score = 38.9 bits (90), Expect = 0.018
Identities = 40/266 (15%), Positives = 74/266 (27%), Gaps = 113/266 (42%)
Query: 11 MDYSLRDYEDTPLGSTSHGVD--SSHLLRQNSDLQRKLDEESVIN--RKKLEA-----YR 61
+ ++ + G+T H ++ + + +D ES RK + R
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAE-TD-----SWESFFVSVRKAITVLFFIGVR 309
Query: 62 TSQQQQAALVSKLQAKLLQYKQRCKE------L--------ELEREAPSTSSYL------ 101
+A + L +L+ E L +++ T+S+L
Sbjct: 310 C---YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 102 --------------GPLPSTPLPSALDAAQAHLREMREERIQDLNTALRRLDDERRENEK 147
GP P +L LR+ + A LD R +
Sbjct: 367 EISLVNGAKNLVVSGP------PQSLYGLNLTLRKAK---------APSGLDQSRIPFSE 411
Query: 148 LRKM-------------NSVYKEQLDEAHHTNEALTNDLEK---------L------TTD 179
RK+ +S L A ++ + DL K + T D
Sbjct: 412 -RKLKFSNRFLPVASPFHSHL---LVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 180 WTHLRE----------EMAMKEK-DW 194
+ LR + ++ W
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKW 490
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 52.4 bits (126), Expect = 1e-06
Identities = 20/162 (12%), Positives = 52/162 (32%), Gaps = 1/162 (0%)
Query: 602 KELQRLQEQLASLRSDKESLEAILFDTQSHL-EQSDVKKEQLEHEVQELLVKQESLKGQV 660
L + + +A +++ + E ++ + +L+ + + ++ Q+ +
Sbjct: 837 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 896
Query: 661 VRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQ 720
N + + + + + + + L L +
Sbjct: 897 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 956
Query: 721 NEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQ 762
N V +LTE K+ A + ++ + EL RLQ
Sbjct: 957 NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 998
Score = 51.6 bits (124), Expect = 2e-06
Identities = 26/204 (12%), Positives = 60/204 (29%), Gaps = 12/204 (5%)
Query: 545 KLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKEL 604
K K Q E++ + ++ + E + +I +E ++E
Sbjct: 813 KTEKPPKGQEVSELEAIYNSLQTKL--RLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 870
Query: 605 QRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEH--EVQELLVKQESLKGQVVR 662
+ L LE K E + + ++ +
Sbjct: 871 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEA 930
Query: 663 LNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNE 722
+ E + E ++ S++ Q + + + + + E T ++ +K E
Sbjct: 931 FDGECQSLEGQSNSDLLSILAQLT------ELNYNGVPELTERKDTFFAQQWTGVKSSAE 984
Query: 723 ECVTKLTEEKEQVRAA--LEKKLH 744
L E E+++ L H
Sbjct: 985 TYKNTLLAELERLQKIEDLHHHHH 1008
Score = 49.3 bits (118), Expect = 1e-05
Identities = 27/217 (12%), Positives = 67/217 (30%), Gaps = 19/217 (8%)
Query: 521 RGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTL---LAHIEKSKGDVEAEME 577
+ + + + + E + N+ K L + + + I+ + +E +
Sbjct: 809 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 868
Query: 578 RLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDV 637
++ K + ++ ++ L++L+ + S E T +
Sbjct: 869 EHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNE-----TGDSITAVQA 923
Query: 638 KKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQIS 697
K + LE E + ++ + +L + L ++ D + Q +
Sbjct: 924 KLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN---YNGVPELTER---KDTFFAQQWT 977
Query: 698 NLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQ 734
+K E L E L+K + L
Sbjct: 978 GVKSSAETYKNTLLAELERLQK-----IEDLHHHHHH 1009
Score = 45.0 bits (107), Expect = 3e-04
Identities = 23/203 (11%), Positives = 54/203 (26%), Gaps = 13/203 (6%)
Query: 441 REKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKL 500
+ + + + + ++ L KRE V +++ S L K +
Sbjct: 818 PKGQEVSELEAIYNSLQTKLRLIKRE--PFVAPAGLTPNEIDSTWSALEKAEQEHAEALR 875
Query: 501 FLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKEL--LEQNKEEM 558
+I + L+ E+ L + +L LE E
Sbjct: 876 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935
Query: 559 QTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDK 618
Q+L + A++ L N E ++ ++ + ++
Sbjct: 936 QSLEGQSNSDLLSILAQLTELNY-----NGVPELTERKDTFFAQQWTGVKSSAETYKNTL 990
Query: 619 ESLEAILFDTQSHLEQSDVKKEQ 641
+ + +E
Sbjct: 991 LAEL----ERLQKIEDLHHHHHH 1009
Score = 35.0 bits (81), Expect = 0.29
Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Query: 389 RKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVK 448
++E +A + + + + ++++ ++ + + + L + R + L +
Sbjct: 841 KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKL-E 899
Query: 449 NIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDR 508
N + + I + L + + S + N L S L
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Query: 509 INSDMDAREVELRGK-----EDMNRRLREDLLIANEDLKNAKLAKELLEQN 554
++ R+ + + + LL E L+ + +
Sbjct: 960 GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
Score = 33.5 bits (77), Expect = 0.84
Identities = 24/188 (12%), Positives = 57/188 (30%), Gaps = 6/188 (3%)
Query: 1313 HTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTL 1372
+ ++++ + +LQ + +L + + ++ + L +
Sbjct: 816 KPPKGQEVSELEAIYNSLQTKL-----RLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 870
Query: 1373 ELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQ 1432
L + + + L K +L+ L E + +Q +
Sbjct: 871 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEA 930
Query: 1433 QRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLE-RASAGETEL 1491
+ E ++N L + N G+ E T Q ++ A + L
Sbjct: 931 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 990
Query: 1492 RGEIQTLQ 1499
E++ LQ
Sbjct: 991 LAELERLQ 998
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 50.4 bits (121), Expect = 5e-06
Identities = 20/163 (12%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 602 KELQRLQEQLASLRSDKESLEAILFDTQSHL-EQSDVKKEQLEHEVQELLVKQESLKGQV 660
L + + +A +++ + E ++ + +L+ + + ++ Q+ +
Sbjct: 829 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 888
Query: 661 VRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQ 720
N + + + + + + + L L +
Sbjct: 889 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 948
Query: 721 NEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQA 763
N V +LTE K+ A + ++ + EL RLQ
Sbjct: 949 NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 991
Score = 49.3 bits (118), Expect = 1e-05
Identities = 23/184 (12%), Positives = 58/184 (31%), Gaps = 13/184 (7%)
Query: 541 LKNAKLAKELLEQNKE--EMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIE 598
+ + L+++ I+ + +E + ++ K + ++
Sbjct: 822 YNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ 881
Query: 599 ANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKG 658
++ L++L+ + S E T + K + LE E +
Sbjct: 882 KYNRILKKLENWATTKSVYLGSNE-----TGDSITAVQAKLKNLEAFDGECQSLEGQSNS 936
Query: 659 QVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLK 718
++ + +L + L ++ D + Q + +K E L E L+
Sbjct: 937 DLLSILAQLTELNYNGVP---ELTER---KDTFFAQQWTGVKSSAETYKNTLLAELERLQ 990
Query: 719 KQNE 722
K +
Sbjct: 991 KIED 994
Score = 44.3 bits (105), Expect = 4e-04
Identities = 27/263 (10%), Positives = 78/263 (29%), Gaps = 19/263 (7%)
Query: 1361 ELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTK 1420
+L+ R T L ++ + + +++ +++ S A
Sbjct: 749 QLEEERASEQTKSDYLK-----RANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEY 803
Query: 1421 LELQRVALEGDQQRLQMLL--QEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLN 1478
+ ++ + L+ + + + L K + ++ ++L+ +
Sbjct: 804 KKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA 863
Query: 1479 LTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLD 1538
L + ++ +Q R L N K + + + +Q +L
Sbjct: 864 EALRIELKRQKKIAVLLQKYNR-----ILKKLENWATTKSVYLGSNETGDSITAVQAKLK 918
Query: 1539 TCQASLAELRRQQV-NRLENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQ 1597
+A E + + + + L +T+ + +L++ K Q ++
Sbjct: 919 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTE------RKDTFFAQQWTGVK 972
Query: 1598 EEKYALETKLSQTKAAANSQNEL 1620
+ L +L
Sbjct: 973 SSAETYKNTLLAELERLQKIEDL 995
Score = 42.7 bits (101), Expect = 0.001
Identities = 22/186 (11%), Positives = 51/186 (27%), Gaps = 6/186 (3%)
Query: 441 REKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKL 500
+ + + + + ++ L KRE V +++ S L K +
Sbjct: 810 PKGQEVSELEAIYNSLQTKLRLIKRE--PFVAPAGLTPNEIDSTWSALEKAEQEHAEALR 867
Query: 501 FLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKEL--LEQNKEEM 558
+I + L+ E+ L + +L LE E
Sbjct: 868 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 927
Query: 559 QTLLAHIEKSKGDVEAEMERLL--LDRSDMNEQISKYEITIEANDKELQRLQEQLASLRS 616
Q+L + A++ L + + + + + L +
Sbjct: 928 QSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 987
Query: 617 DKESLE 622
+ +E
Sbjct: 988 RLQKIE 993
Score = 41.2 bits (97), Expect = 0.004
Identities = 26/201 (12%), Positives = 62/201 (30%), Gaps = 10/201 (4%)
Query: 1273 IVRKGVRNL--MQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRAL 1330
K Q+V+++E + L+ + +KRE + T AL
Sbjct: 801 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKRE-----PFVAPAGLTPNEIDSTWSAL 855
Query: 1331 QEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKL 1390
++ + L + + + N L+ L T + L + S +
Sbjct: 856 EKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSI--TAV 913
Query: 1391 MKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQ 1450
++ D E ++L+ + + + +L + G + + ++
Sbjct: 914 QAKLKNLEAFDGECQSLEGQSNSDLLSILA-QLTELNYNGVPELTERKDTFFAQQWTGVK 972
Query: 1451 ERCEHQCRNITGLEERCTSLK 1471
E + ER ++
Sbjct: 973 SSAETYKNTLLAELERLQKIE 993
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 48.7 bits (116), Expect = 2e-05
Identities = 40/242 (16%), Positives = 94/242 (38%), Gaps = 43/242 (17%)
Query: 640 EQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNL 699
+ + V + K++ L+ + + LN L+ + ++T+A Q+ +L
Sbjct: 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLK----KLRDTEA---------------QVKDL 1939
Query: 700 KKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELS 759
+ L ++ L +NE+ KL + + +AA K+ A Q+ + +
Sbjct: 1940 QVS-------LAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEI 1992
Query: 760 RLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQV---LKELE 816
+Q + + + + E A + Q I ++ + + +
Sbjct: 1993 AVQKVKAYADLEKAEPTGPLREEVEQLE----NAANELKLKQDEIVATITALEKSIATYK 2048
Query: 817 EEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEEL---KTRTEEEKAILERKIS 873
EE TL R EQ + + ++ +++R++A L+ L + R E++ ++S
Sbjct: 2049 EEYATLIRET-------EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101
Query: 874 DL 875
+
Sbjct: 2102 TV 2103
Score = 39.9 bits (93), Expect = 0.011
Identities = 27/211 (12%), Positives = 73/211 (34%), Gaps = 18/211 (8%)
Query: 304 EERVEELLKRIHTLEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQDAEGKDIPS 363
E+ ++L + L +++ V+++Q L L Q +
Sbjct: 1909 NEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968
Query: 364 RPAPLKRHATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVT 423
+ A IK + +L +++ K + + ++
Sbjct: 1969 QAA--------------EIKQKDARELQVQLDVRNKEIAVQKVKA----YADLEKAEPTG 2010
Query: 424 SLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQK 483
L +++Q + ++ +++ +V I L + ++ + E + + KV+
Sbjct: 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070
Query: 484 NNSRLSKINESLQSEKLFLQNELDRINSDMD 514
R + ++L SE+ + + + N+ M
Sbjct: 2071 KVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101
Score = 36.0 bits (83), Expect = 0.16
Identities = 25/201 (12%), Positives = 69/201 (34%), Gaps = 22/201 (10%)
Query: 1400 LDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRN 1459
++ ++ L++E + KL ++ LQ+ L +K L E+ + +
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVK----DLQVSLAQKNRELDVKNEQANQKLKQ 1963
Query: 1460 ITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQL 1519
+ DQ +++ A E +++ +++ + + + +
Sbjct: 1964 MV------------QDQQAAEIKQKDARELQVQLDVRNKEIAVQ------KVKAYADLEK 2005
Query: 1520 QKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDLSDAH 1579
+ E L+ + + E+ ++ K L RE + +
Sbjct: 2006 AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065
Query: 1580 TQESNKMAQAQQTMRALQEEK 1600
++ NK+ ++ + L E+
Sbjct: 2066 SKVKNKVDRSIALLDNLNSER 2086
Score = 35.3 bits (81), Expect = 0.24
Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 3/174 (1%)
Query: 1283 QQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLS 1342
QV ++ + Q+ Q+ R LQ + +++
Sbjct: 1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIA 1993
Query: 1343 QTKAAAN---SQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGAR 1399
K A ++E EE++ L L+L + + + + +E A
Sbjct: 1994 VQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053
Query: 1400 LDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERC 1453
L E ++ E S+ + +V + L ++ R + + T + +
Sbjct: 2054 LIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107
Score = 33.3 bits (76), Expect = 0.86
Identities = 25/201 (12%), Positives = 71/201 (35%), Gaps = 25/201 (12%)
Query: 392 TKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIE 451
KL Q+ ++ ++Q+ L + +Q +L Q+ ++++A +
Sbjct: 1927 KKLRDTEAQVKDLQVS----------LAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK 1976
Query: 452 MLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINS 511
R + L+ +EI ++L+K + L+ E++++ +
Sbjct: 1977 DARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGP---------------LREEVEQLEN 2021
Query: 512 DMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGD 571
+ +++ L + + E+ E ++ +++ + +
Sbjct: 2022 AANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDN 2081
Query: 572 VEAEMERLLLDRSDMNEQISK 592
+ +E R + N Q+S
Sbjct: 2082 LNSERGRWEQQSENFNTQMST 2102
Score = 31.0 bits (70), Expect = 5.1
Identities = 23/206 (11%), Positives = 74/206 (35%), Gaps = 16/206 (7%)
Query: 128 IQDLNTALRRLDDERRENEKLRKMNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREE- 186
+ +N + ++++R + E+ + ++ ++L + + L L + + E+
Sbjct: 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957
Query: 187 ---MAMKEKDWIEEEQYFNDY-----YSSEHARLLALWRDVVDIKRSFTAMQSATEQDLS 238
+ +D E D + +A+ + +++
Sbjct: 1958 NQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVE 2017
Query: 239 KIRSDLNQSTRQMSGACNGLVALSAGSSATNAEKDKLVKENSELKSQV--TVLKSEN--- 293
++ + N+ + + AL + E L++E ++K++ K +
Sbjct: 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077
Query: 294 --NAMANESKQKEERVEELLKRIHTL 317
+ + +E + E++ E ++ T+
Sbjct: 2078 LLDNLNSERGRWEQQSENFNTQMSTV 2103
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 45.7 bits (108), Expect = 1e-04
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 526 MNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSD 585
++ +DL + L + ++Q + +Q E SK + ++ L
Sbjct: 32 YQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPN---MIDAATLKSRK 88
Query: 586 MNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQS 635
M E+I KYE +I +D ++ LQE S +L+ + ++ ++
Sbjct: 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 138
Score = 41.4 bits (97), Expect = 0.002
Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 1432 QQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETEL 1491
Q ++ LQ E LH+++ + + I ++ +++ + ++ A+ ++
Sbjct: 33 QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNM---IDAATLKSRKM 89
Query: 1492 RGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQ 1551
EI + ++ + +S ++ LQ++ +S + L+E++ +A E +
Sbjct: 90 LEEIMKYEASI--LTHDSS-----IRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDT 142
Query: 1552 VNR 1554
V
Sbjct: 143 VQI 145
Score = 40.3 bits (94), Expect = 0.005
Identities = 15/129 (11%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 585 DMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQS-DVKKEQLE 643
+ + +S Y+ ++ + + L+ + Q+ + S+ + L + T + E S +
Sbjct: 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAAT 83
Query: 644 HEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQN 703
+ +++L + + ++ + + ++ +I NLK++
Sbjct: 84 LKSRKMLEEIMKYEASILTHDSSIRYLQEIYNS---------------NNQKIVNLKEKV 128
Query: 704 EECVTKLTE 712
+ + E
Sbjct: 129 AQLEAQCQE 137
Score = 39.1 bits (91), Expect = 0.011
Identities = 15/112 (13%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 1371 TLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVT----KLELQRV 1426
L + V ++ +D L + + + +A+Q + E+ L+
Sbjct: 28 FLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSR 87
Query: 1427 ALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLN 1478
+ + + + + ++++ LQE + I L+E+ L+ +
Sbjct: 88 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPC 139
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 45.3 bits (106), Expect = 2e-04
Identities = 67/540 (12%), Positives = 166/540 (30%), Gaps = 37/540 (6%)
Query: 311 LKRIHTLEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQDAEGKDIPSRPAPLKR 370
++ T R+ + E++ ++ E L + L + R I E + + +++
Sbjct: 228 AQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENTMQAMQQ 287
Query: 371 HATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLD 430
KP +++ +L + L T + + + S ++
Sbjct: 288 KLEDFRDYRRLHKPP-KVQEKCQLEINFNTLQTKLRLSN-----RPAFMPSEGKMVSDIN 341
Query: 431 QTKAQLAQVGREKE-ALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNN---S 486
L Q + E L+ I L EK +++ + + +Q+ + +
Sbjct: 342 NAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETA 401
Query: 487 RLSKINESLQSEKLF---LQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKN 543
LS+I L+ + F L DR+ + + + + N
Sbjct: 402 TLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDN 461
Query: 544 AKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEI-----TIE 598
+ + E + LL I++ + E + I I+
Sbjct: 462 LGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQ 521
Query: 599 ANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVK----KEQLEHEVQELLVKQE 654
++ + L +++++ I + ++ V QE+ K E
Sbjct: 522 GLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWE 581
Query: 655 SLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEK 714
++ V R ++ L + R Q+ + Q + N I + E + +++ E
Sbjct: 582 HVRQLVPRRDQALMEEHARQQQNERLRKQFGAQA-----NVIGPWIQTKMEEIGRISIEM 636
Query: 715 INLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDK 774
+ + + + + +++ L +QI E + + ++ ++
Sbjct: 637 HGTLEDQLNHLRQYEKSIVNYKPKIDQ-LEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQ 695
Query: 775 ICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSE 834
L + + Q + + + + E DR K +
Sbjct: 696 ---------LLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCED 746
Score = 43.0 bits (100), Expect = 0.001
Identities = 42/384 (10%), Positives = 118/384 (30%), Gaps = 17/384 (4%)
Query: 297 ANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQDA 356
A+ + + E +L++ A + E + E + +L Q+ + IA +
Sbjct: 379 ASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELN 438
Query: 357 EGKDIPSRPAPLKRHATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQY 416
E P+ R + RE L +K E+ D+
Sbjct: 439 ELD-YYDSPSVNARCQKICDQWD---------NLGALTQKRREALERTEKLLETIDQLYL 488
Query: 417 NMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNS 476
+++ + ++ L ++ I+ L + + ++ +++
Sbjct: 489 EYAKRAAPFNNWMEGAMEDLQD--TFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILG 546
Query: 477 NLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGK-EDMNRRLREDLL 535
++V K E++ + + + R +++
Sbjct: 547 IHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNER 606
Query: 536 IANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEI 595
+ + A + ++ EE+ + + + D + + + +I + E
Sbjct: 607 LRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEG 666
Query: 596 T----IEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLV 651
EA + + + +R E L + T + +E + ++ +++
Sbjct: 667 DHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNE 726
Query: 652 KQESLKGQVVRLNKELEDTEKRAQ 675
+ S + ++ + RA
Sbjct: 727 FRASFNHFDRKKTGMMDCEDFRAC 750
Score = 37.2 bits (85), Expect = 0.065
Identities = 41/389 (10%), Positives = 113/389 (29%), Gaps = 12/389 (3%)
Query: 1199 DRSSDLERYRAAQLHAESLLEAREKSHRQQVNRLENQLDG---RASHAGGKMTSPSRRYS 1255
E+ L E R ++ + + + + + S
Sbjct: 345 GGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLS 404
Query: 1256 PVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQ 1315
++ + D + V + ++ A ++I D D
Sbjct: 405 EIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGA 464
Query: 1316 ESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQK--NEELQHLREKVLTLE 1373
+ K +A + L E L + ++ A N+ E + + + H E++ L
Sbjct: 465 LTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLT 524
Query: 1374 LTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQ 1433
D + + + ++ T + + G +
Sbjct: 525 TAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTN---PYTTITPQEINGKWE 581
Query: 1434 RLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRG 1493
++ L+ ++ L + R + R + + I + R S
Sbjct: 582 HVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLE 641
Query: 1494 EIQTLQRNLMDTSLNSQSNCEKLKQL-QKLLHSAENEKRVLQERLDTCQASLAELR---R 1549
+ R + +N + ++L+ Q++ + + + ++ + +L
Sbjct: 642 DQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIA 701
Query: 1550 QQVNRLENQDDLKAMTQALKREIKDLSDA 1578
+ +N +ENQ + + ++ + +
Sbjct: 702 RTINEVENQILTRDAKGISQEQMNEFRAS 730
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 42.6 bits (99), Expect = 0.001
Identities = 45/294 (15%), Positives = 106/294 (36%), Gaps = 19/294 (6%)
Query: 455 VEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMD 514
V A +N + + + + + + + + L + E+ +S D
Sbjct: 316 VLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKD 375
Query: 515 AREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEA 574
+ + + R+D N++ + + + L + + A I G
Sbjct: 376 VDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRL 435
Query: 575 EMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQ 634
+++L + E+ K + + LQ L S S ++ + Q
Sbjct: 436 FVQKLQDLKKKYYEEPRKGI-------QAEEILQTYLKSKESMTDA-----------ILQ 477
Query: 635 SDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQN 694
+D + E E++ VK ES + L++ E+ ++ + S + L +N
Sbjct: 478 TDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 537
Query: 695 QISNLKKQNEECVT-KLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATV 747
L K+ E + KL E++ LK+ ++ + E + ++ + ++ T+
Sbjct: 538 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACTI 591
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 40.3 bits (93), Expect = 0.005
Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 10/253 (3%)
Query: 370 RHATFSARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQL 429
H + R + + + +Q K Q E A + QQ
Sbjct: 287 NHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQ-------- 338
Query: 430 DQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLS 489
+ + +L Q+ E E N+ + LE+ R++ E L +++Q RL
Sbjct: 339 -EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397
Query: 490 KINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLA-K 548
+ +E+ L++E+ ++ + E+ K+ RRL+E++ A A A
Sbjct: 398 ETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457
Query: 549 ELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQ 608
+ +A E D + + + + +RL
Sbjct: 458 AATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLH 517
Query: 609 EQLASLRSDKESL 621
QL +L+ D
Sbjct: 518 NQLKALKQDLARS 530
Score = 38.7 bits (89), Expect = 0.019
Identities = 40/212 (18%), Positives = 83/212 (39%), Gaps = 5/212 (2%)
Query: 785 RAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLR 844
+ E ++ QA L+ QD + + L+ +EE + R E+ +N R
Sbjct: 348 QEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAER 407
Query: 845 EQLNRTVAKLEELKTRTEEEKAILERKISDLKSE-REALVTESEELKVQLHLSEDKVDTV 903
++L + +E +R ++E + + + L+ E +A + E L + + V
Sbjct: 408 QKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHV 467
Query: 904 QAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESE- 962
+ ++ ES DL L D ++ A+ N+ L +K ++ +
Sbjct: 468 AERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDL 527
Query: 963 ---KRDQARTIDEGLQKIAVRFGDDEKQALRN 991
+ T + + + VR G D+ + LR
Sbjct: 528 ARSCDETKETAMDKIHRENVRQGRDKYKTLRE 559
Score = 35.3 bits (80), Expect = 0.20
Identities = 27/259 (10%), Positives = 85/259 (32%), Gaps = 6/259 (2%)
Query: 771 HIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESA 830
I +C + + +R + + + + ++L+ E +R +++
Sbjct: 279 RILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQ 338
Query: 831 GRSEQDRNTINTLR------EQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVT 884
++ R + + + +LEE + + K LE++ ++L++ + L
Sbjct: 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398
Query: 885 ESEELKVQLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDK 944
+ ED++ Q ++ + ++ ++ L++++ D + ++
Sbjct: 399 TKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLA 458
Query: 945 YAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLK 1004
+ + + + E R DD + ++ +
Sbjct: 459 ATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHN 518
Query: 1005 KELLQAEQIRLDLDSEKVT 1023
+ + + D K T
Sbjct: 519 QLKALKQDLARSCDETKET 537
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 40.2 bits (95), Expect = 0.007
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 1395 ESGARLDAEKRALQDELSRTEARVTKLELQRVAL-----EGDQQRLQML---LQEKETNL 1446
E+ ARL + +E+ E + +LE++R AL Q+RL+ + + + +
Sbjct: 387 EAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEI 446
Query: 1447 HKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERAS-AGE----TELR-GEIQTLQR 1500
KL+ E + + L E + +D++ +E A + ELR GE+ L+
Sbjct: 447 AKLRAEWEREREILRKLRE----AQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEA 502
Query: 1501 NLMDTSLNSQSN 1512
+ S +
Sbjct: 503 EVEALSEKLRGA 514
Score = 34.4 bits (80), Expect = 0.45
Identities = 14/90 (15%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 598 EANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQEL-------- 649
+ + L+ ++ ++A L + L A + L + + +L+ +E+
Sbjct: 426 PDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYD 485
Query: 650 LVKQESLK-GQVVRLNKELEDTEKRAQETK 678
L + L+ G++ +L E+E ++ + +
Sbjct: 486 LNRAAELRYGELPKLEAEVEALSEKLRGAR 515
Score = 33.3 bits (77), Expect = 1.0
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 806 DRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEK 865
D L + +LE E+ L K+E S Q+R + + ++ + ++ +L+ E E+
Sbjct: 404 DALERKKLQLEIEREAL---KKEKDPDS-QER--LKAIEAEIAKLTEEIAKLRAEWERER 457
Query: 866 AILERKISDLKSEREALVTESEE 888
IL K+ + + + + E E
Sbjct: 458 EILR-KLREAQHRLDEVRREIEL 479
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 39.1 bits (91), Expect = 0.017
Identities = 44/303 (14%), Positives = 98/303 (32%), Gaps = 19/303 (6%)
Query: 796 IAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKL- 854
+ V+ ELE+ I+ SE+++ L + R L
Sbjct: 740 FTDAATGEAKRGFMTVVSELEQRFPDPTSIE------SEKEKKDFVKLFGEYLRAENILQ 793
Query: 855 --EELKTRTEEEKAILERKISDLKSEREALVTESE--ELKVQLHLSEDKVDTVQAQLLET 910
+E T ++ L ++ K + E V + + EL+ ++ K+ ++ +
Sbjct: 794 NYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDI 853
Query: 911 ARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKR---DQA 967
+ + + + T D FE D +L ++ + R +
Sbjct: 854 RDWQRREKEA-----EKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKG 908
Query: 968 RTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEK 1027
I+E + I G+ K+ L Q+N K + ++ +
Sbjct: 909 EMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEAL 968
Query: 1028 CKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLK 1087
K + ++ I L +++ + LS + KK+ V + +
Sbjct: 969 IKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSFI 1028
Query: 1088 QKY 1090
+K+
Sbjct: 1029 EKF 1031
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 38.2 bits (88), Expect = 0.017
Identities = 27/181 (14%), Positives = 72/181 (39%), Gaps = 5/181 (2%)
Query: 540 DLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEA 599
++ + + LE E + L K + L ++ + Q+SK E T++
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71
Query: 600 NDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQ 659
+ ++ +Q++++ ++S++E + + + Q E++ L + + +
Sbjct: 72 TNAKIASIQKKMSEIKSERELRSL-----NIEEDIAKERSNQANREIENLQNEIKRKSEK 126
Query: 660 VVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKK 719
L KE+ + EK A E ++ + + + Q + E+ K+ +++
Sbjct: 127 QEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186
Query: 720 Q 720
Sbjct: 187 W 187
Score = 34.7 bits (79), Expect = 0.22
Identities = 20/175 (11%), Positives = 62/175 (35%), Gaps = 2/175 (1%)
Query: 789 DKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLN 848
+ LI D L +++E ++ K L+ Q++
Sbjct: 4 NTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVS 63
Query: 849 RTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLL 908
+ L++ + + + S + E +L E + K + + + +++ +Q ++
Sbjct: 64 KNEQTLQDTNAKIASIQKKMSEIKS--ERELRSLNIEEDIAKERSNQANREIENLQNEIK 121
Query: 909 ETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEK 963
+ + ++ + L K L+ ++ + + + + +E + + K
Sbjct: 122 RKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK 176
Score = 30.5 bits (68), Expect = 5.0
Identities = 20/165 (12%), Positives = 58/165 (35%), Gaps = 5/165 (3%)
Query: 471 VESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRL 530
+ L+ +D ++ K + ++K + + + A ++++ E +
Sbjct: 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72
Query: 531 REDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQI 590
+ + + K +EL N E ++ E+E L + +E+
Sbjct: 73 NAKIASIQKKMSEIKSERELRSLNIE-----EDIAKERSNQANREIENLQNEIKRKSEKQ 127
Query: 591 SKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQS 635
+ + +K L+ + + + + + I+F + L +
Sbjct: 128 EDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEK 172
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.021
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 38/68 (55%)
Query: 1222 EKSHRQQVNRLENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEIVRKGVRNL 1281
EK Q + +L+ L K+ Y+ D P + K
Sbjct: 18 EK---QALKKLQASL---------KL------YAD-----------DSAPALAIK----- 43
Query: 1282 MQQVAQIE 1289
A +E
Sbjct: 44 ----ATME 47
Score = 34.9 bits (79), Expect = 0.10
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 357 EGKDIPSRPAPLKRHATFSARPSTSIKPSV 386
E + + A LK +A SA P+ +IK ++
Sbjct: 18 EKQALKKLQASLKLYADDSA-PALAIKATM 46
Score = 34.5 bits (78), Expect = 0.13
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 28/57 (49%)
Query: 64 QQQQAALVSKLQAKLLQYKQRCKELELEREAPSTSSYLGPLPSTPLPSALDAAQAHL 120
++Q + KLQA L Y A S P AL A +A +
Sbjct: 18 EKQA---LKKLQASLKLY------------ADD---------SAP---AL-AIKATM 46
Score = 34.2 bits (77), Expect = 0.14
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 18/44 (40%)
Query: 1701 EMQQLRQALGDSLRTVAHD--PAVDALLLEHEANKLDTTALSAS 1742
E Q L++ L SL+ A D PA+ A+ A+
Sbjct: 18 EKQALKK-LQASLKLYADDSAPAL---------------AIKAT 45
Score = 31.5 bits (70), Expect = 1.4
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 731 EKEQVRAALEKKLHATVKQITEEKDCELSRLQANL 765
EK+ + KKL A++K ++ L+ ++A +
Sbjct: 18 EKQAL-----KKLQASLKLYADDSAPALA-IKATM 46
Score = 30.3 bits (67), Expect = 2.9
Identities = 4/24 (16%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 1621 EVKEVARAGLESQLRMSQWPSESP 1644
E + + + L++ L++ +P
Sbjct: 18 EKQALKK--LQASLKLYA-DDSAP 38
Score = 30.3 bits (67), Expect = 3.5
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 21/46 (45%)
Query: 985 EKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSE-----KVTLQ 1025
EKQAL+ +L ASLK L A+ DS K T++
Sbjct: 18 EKQALK-KLQ------ASLK---LYAD------DSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 4.0
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 1549 RQQVNRLENQ------DDLKAMTQALKREIK 1573
+Q + +L+ D A+ A+K ++
Sbjct: 19 KQALKKLQASLKLYADDSAPAL--AIKATME 47
Score = 29.1 bits (64), Expect = 7.5
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 11/37 (29%)
Query: 7 LKDKMDYSLRDYEDTPLGSTSHGVDSSHLLRQNSDLQ 43
LK K+ SL+ Y D DS+ L + ++
Sbjct: 22 LK-KLQASLKLYAD----------DSAPALAIKATME 47
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 38.1 bits (89), Expect = 0.023
Identities = 18/147 (12%), Positives = 54/147 (36%), Gaps = 11/147 (7%)
Query: 745 ATVKQITEE-KDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKA 803
+ K + ++ + N Q +++I Q L R ++ + +++ +
Sbjct: 126 VSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMF-EEVSGSIQYKKEYEE 184
Query: 804 IQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEE 863
+++++ ++ K E RI E T + ++ + E
Sbjct: 185 LKEKIEKLSKSATESIKNRRRIHGE--------LKTYKSPGLEVLFQGPRGSRYD-EAEG 235
Query: 864 EKAILERKISDLKSEREALVTESEELK 890
++ + LK+E + ++ + ++K
Sbjct: 236 RFEVINNETEQLKAEEKKILNQFLKIK 262
Score = 36.6 bits (85), Expect = 0.073
Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 773 DKICQQHE-DALLRAEG--DKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRES 829
K + L E K + L+ Q D + I + L + EE + K+E
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEY 182
Query: 830 AGRSEQDRNTINTLREQLNRTVAKLEELKTRTE------------EEKAILERKISDLKS 877
E+ + E + ELKT E + + +
Sbjct: 183 EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINN 242
Query: 878 EREALVTESEELK 890
E E L E +++
Sbjct: 243 ETEQLKAEEKKIL 255
Score = 32.7 bits (75), Expect = 1.2
Identities = 19/138 (13%), Positives = 50/138 (36%), Gaps = 4/138 (2%)
Query: 542 KNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQIS---KYEITIE 598
K + E + + +GDVE + ++ S M E++S +Y+ E
Sbjct: 124 KTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYE 183
Query: 599 ANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKG 658
+++++L + ++ + L +S + + + E + E +
Sbjct: 184 ELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGS-RYDEAEGRFEVINN 242
Query: 659 QVVRLNKELEDTEKRAQE 676
+ +L E + + +
Sbjct: 243 ETEQLKAEEKKILNQFLK 260
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 37.5 bits (87), Expect = 0.028
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 586 MNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEH 644
M E+I KYE +I +D ++ LQE S +L+ + ++ ++ Q+
Sbjct: 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
Score = 34.8 bits (80), Expect = 0.24
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 1330 LQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDK 1389
+ EE E + ++ E + N+++ +L+EKV LE ++ Q D
Sbjct: 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDI 61
Query: 1390 LMK-CRE 1395
K C++
Sbjct: 62 TGKDCQD 68
Score = 31.3 bits (71), Expect = 2.5
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 1514 EKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQ--DDLKAMTQALKRE 1571
E++ + + + + ++ R LQE ++ + L +++V +LE Q + K Q
Sbjct: 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNL-KEKVAQLEAQCQEPCKDTVQIHDIT 62
Query: 1572 IKDLSDAHTQ 1581
KD D +
Sbjct: 63 GKDCQDIANK 72
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 37.6 bits (86), Expect = 0.040
Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 13/270 (4%)
Query: 697 SNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDC 756
+ K+ + K K ++ + + L V++ E K
Sbjct: 583 LSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSG 642
Query: 757 ELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELE 816
++++A Q S D+I R + + ++ + D+L ++ K+L+
Sbjct: 643 NKNKMEAKA-QANSQKDEIFALINKEANR-DARAIAYTQNLKGIKRELSDKLEKISKDLK 700
Query: 817 EEKCTLDRIKRESAGRSEQDRNTINTLREQLNRT------VAKLEELKTRTEEEKAILER 870
+ + D K + T+ L+ + ++K+E L E K +
Sbjct: 701 DFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNK 760
Query: 871 KISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLET--ARRLKEAENVGESLRKDL 928
S + + L +++ + ++ DKVD + + E V L+
Sbjct: 761 DFSKVTQAKSDLENSVKDVIINQKVT-DKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFS 819
Query: 929 LDTKTHLADSNFEKDKYAKSNKDLREMVKK 958
+ A N + + N +L + VK
Sbjct: 820 KEQLAQQAQKNEDFN--TGKNSELYQSVKN 847
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 37.6 bits (86), Expect = 0.041
Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 12/220 (5%)
Query: 1405 RALQDELSRTEARVTKLE--LQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITG 1462
L +L +R + L + + ++ LQ QE + + C + R I
Sbjct: 58 HDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILE 117
Query: 1463 LEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKL 1522
+R ++ Q + L++ E+ + RN+ D + + + L+ LQ
Sbjct: 118 NAQRFNQAQSGNIQSTVMLDKQK--------ELDSKVRNVKDKVMCIEHEIKSLEDLQDE 169
Query: 1523 LHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDD--LKAMTQALKREIKDLSDAHT 1580
+ + + S + + + ++ D K + + +
Sbjct: 170 YDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQN 229
Query: 1581 QESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQNEL 1620
N + + L Q + E
Sbjct: 230 ALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAES 269
Score = 36.0 bits (82), Expect = 0.13
Identities = 28/217 (12%), Positives = 73/217 (33%), Gaps = 15/217 (6%)
Query: 1300 QALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKN 1359
LK E K L +A + Q T+ ++++ L + ++ +
Sbjct: 107 SCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKE------LDSKVRNVKDKVMCIEHEI 160
Query: 1360 EELQHLREKVLTLELTLSNVSEEKSQGDDKLMK-----CRESGARLDAEKRALQDELSRT 1414
+ L+ L+++ TL N E + K ++ LD +++ + ++
Sbjct: 161 KSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIEL 220
Query: 1415 EARVTKLELQRVALEGD----QQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSL 1470
+ + E +Q+ + L +LQ ++ + ++ L
Sbjct: 221 LNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKL 280
Query: 1471 KTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSL 1507
+ + + + + L +L + L+ +S
Sbjct: 281 EELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSSF 317
Score = 34.1 bits (77), Expect = 0.44
Identities = 28/182 (15%), Positives = 65/182 (35%), Gaps = 4/182 (2%)
Query: 1281 LMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETK 1340
++ + +++ + ++K ++ EIK L D + K Q E ++
Sbjct: 135 MLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNRE---HETNGVAKSD 191
Query: 1341 LSQTKAAANSQSEAMDQKNEEL-QHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGAR 1399
Q + +D K +E+ + E + ELT + + ++ + + G
Sbjct: 192 QKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGP 251
Query: 1400 LDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRN 1459
+A LQ+ + + ++ Q LE +Q+ N L +R +
Sbjct: 252 PNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQ 311
Query: 1460 IT 1461
+
Sbjct: 312 LI 313
Score = 32.2 bits (72), Expect = 2.1
Identities = 32/281 (11%), Positives = 95/281 (33%), Gaps = 42/281 (14%)
Query: 399 EQLHTMKKQYESADE--SQYNMSQQVTSLTSQLDQTKAQLAQVGR----EKEALVKNIEM 452
QL ++ + Q+N+ + +L + Q++ + E+ +++N +
Sbjct: 62 SQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQR 121
Query: 453 LR------VEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNEL 506
++ + + ++E++ V ++ + ++ L E LQ E F L
Sbjct: 122 FNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSL----EDLQDEYDFKCKTL 177
Query: 507 DRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIE 566
+ + + ++ + L K++ + + ++ I
Sbjct: 178 QNREHETNG-------------------VAKSDQKQEQLLLKKMYLMLDNKRKEVVHKII 218
Query: 567 KSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILF 626
+ E L+ D ++ + + L +LQ + L
Sbjct: 219 ELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWF-------TIVAESLQ 271
Query: 627 DTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKEL 667
+ L++ + +++ +E + ++ L + L ++L
Sbjct: 272 QVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQL 312
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.043
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 1543 SLAELRRQQVNRLENQD--DLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEK 1600
S+ + R +Q RL+ D + ++ KDL + + ++S ++ + + R +
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 1601 YA 1602
Y
Sbjct: 146 YQ 147
Score = 35.1 bits (80), Expect = 0.11
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 1270 DPEIVRKGVRNLMQQVAQI-ERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMR 1328
+PE +RK +Q ++ E + + ++ KDL + + ++S ++ + + R
Sbjct: 83 EPESIRKWRE---EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 1329 ALQEEKYA 1336
+ Y
Sbjct: 140 IADKAFYQ 147
Score = 32.8 bits (74), Expect = 0.59
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 654 ESLKGQVVRLNKELEDTEKRAQETKASLVQQAS-GLD---ADYQNQISNLKKQNEECVTK 709
ES++ K L++ + ++ + ++A L+ Q+ K N
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI---- 140
Query: 710 LTEEKINLKKQNEECV 725
+K ++ + + +
Sbjct: 141 --ADKAFYQQPDADII 154
Score = 32.1 bits (72), Expect = 0.95
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 922 ESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRF 981
ES+RK + + L E D A S +E +K + + + + E ++K +
Sbjct: 85 ESIRKWREEQRKRLQ----ELD--AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 982 GDDEKQALRNQ 992
+K +
Sbjct: 139 RIADKAFYQQP 149
Score = 30.9 bits (69), Expect = 2.6
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 21/84 (25%)
Query: 434 AQLAQVGREKEALVK-------NIEML----RVEKSAL-EKNKREINEMVESLNSNLDKV 481
AQ ++ +E E++ K ++ L +V + EK K+++ E + + ++K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 482 QKNNSRLSKINESLQSEKLFLQNE 505
+ NN ++K F Q
Sbjct: 135 KINN---------RIADKAFYQQP 149
Score = 30.9 bits (69), Expect = 2.8
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 110 PSALDAAQAHLREMREE---RIQDLNTALRRLDDERRENEK--LRKMNSVYKEQLDEAHH 164
L +R+ REE R+Q+L+ A + ++ E RE K L + N EQ+++
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 165 TNEA 168
N
Sbjct: 137 NNRI 140
Score = 30.1 bits (67), Expect = 4.7
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 515 AREVELRGKEDMNRRLRE--DLLIANEDLKNAKLAKELLEQNKEEMQTLLAH----IEKS 568
A+ L + + R+ RE + D + + +E E+ K++++ +EK+
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 569 KGDVEAEMERLLLDRSD 585
K + +
Sbjct: 135 KINNRIADKAFYQQPDA 151
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 37.5 bits (86), Expect = 0.046
Identities = 26/189 (13%), Positives = 71/189 (37%), Gaps = 11/189 (5%)
Query: 629 QSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGL 688
E+ + + E+E+++L QE Q +E + + + Q+
Sbjct: 18 NQRFEELRLITQDTENELKKLQQTQEYFIIQY----QESLRIQAQFAQLGQLNPQERMSR 73
Query: 689 DADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAA--LEKKLHAT 746
+ Q + +L+ + L + ++ L +++++ + L +++ + ++ K
Sbjct: 74 ETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQ 133
Query: 747 VKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQD 806
+ + L LQ+ +L I + QQ +R Q L I ++ + +
Sbjct: 134 LAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQ-----IRRAEHLCQQLPIPGPVEEMLAE 188
Query: 807 RLSQVLKEL 815
+ + +
Sbjct: 189 VNATITDII 197
Score = 36.3 bits (83), Expect = 0.10
Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 26/195 (13%)
Query: 1278 VRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAH-------TQESNKMAQAQQTMRAL 1330
V + Q+ QI + ++L+ +TQ + E+K L + AQ Q +
Sbjct: 7 VDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLN 66
Query: 1331 QEEKYALETKLSQTKAAANSQSEAMDQK---------------NEELQHLREKVLTLELT 1375
+E+ + ET L Q + + + + Q + L+ + +L EL
Sbjct: 67 PQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELI 126
Query: 1376 LSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRL 1435
++ + + L + L + + + ++ + E L +
Sbjct: 127 QWKRRQQLAGNGGPPEGSLDV---LQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIPGP-V 182
Query: 1436 QMLLQEKETNLHKLQ 1450
+ +L E + +
Sbjct: 183 EEMLAEVNATITDII 197
Score = 32.9 bits (74), Expect = 1.1
Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 8/165 (4%)
Query: 1514 EKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIK 1573
++ ++L+ + ENE + LQ+ + E R Q + + + ++
Sbjct: 19 QRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQ 78
Query: 1574 DLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQT-KAAANSQNELEVKEVARAGLES 1632
++ + Q+ + LQ+ + L K +T + Q + E+ +
Sbjct: 79 ------QKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQ 132
Query: 1633 QLRMSQWPSESPMNGGDSEEITKLCRERSELRNKLENLHDKIQML 1677
QL + P E ++ KL + R ++ Q L
Sbjct: 133 QLAGNGGPPEGSLD-VLQSWCEKLAEIIWQNRQQIRRAEHLCQQL 176
Score = 32.1 bits (72), Expect = 2.0
Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 12/186 (6%)
Query: 588 EQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQ 647
E++ E K+LQ+ QE + ++A Q + +E + Q
Sbjct: 22 EELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQ 81
Query: 648 ELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECV 707
L L+ + L + + ++ Q+T L +Q + + D Q ++Q
Sbjct: 82 VSLETW--LQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWK--RRQQLAGN 137
Query: 708 TKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVK-----QITEEKDCELSRLQ 762
E + + KL E Q R + + H + + E + +
Sbjct: 138 GGPPEGSL---DVLQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATIT 194
Query: 763 ANLCQL 768
+ L
Sbjct: 195 DIISAL 200
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 37.1 bits (85), Expect = 0.055
Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 6/194 (3%)
Query: 730 EEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGD 789
E K + + N + S +D + D R
Sbjct: 597 RIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSS-VDVQSVEPVDQRTRDALQ 655
Query: 790 KQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQ--- 846
+ L I + + +E + L+R K +E+ R + L
Sbjct: 656 RSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMA 715
Query: 847 LNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESE-ELKVQLHLSEDKVDTVQA 905
+ T E ++R E + E + K + +AL E+E EL+ + E ++ +A
Sbjct: 716 VESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARA 775
Query: 906 QL-LETARRLKEAE 918
QL LE ++ + A
Sbjct: 776 QLELEVSKAQQLAN 789
Score = 37.1 bits (85), Expect = 0.056
Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 23/242 (9%)
Query: 1397 GARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQ 1456
G + + L + + + V D Q ++ + Q L + +
Sbjct: 605 GFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEI 664
Query: 1457 CRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKL 1516
TT Q A E E RG ++ + + ++ +L
Sbjct: 665 ---------------TTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLEL 709
Query: 1517 KQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDLS 1576
+ + + S N K + R AE R + Q LKA A++ E +
Sbjct: 710 EAMSMAVESTGNAKAEAESR--------AEAARIEGEGSVLQAKLKAQALAIETEAELER 761
Query: 1577 DAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQNELEVKEVARAGLESQLRM 1636
+E + Q + + + + + K + ++++A AG E Q+++
Sbjct: 762 VKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
Query: 1637 SQ 1638
Q
Sbjct: 822 LQ 823
Score = 34.4 bits (78), Expect = 0.44
Identities = 36/229 (15%), Positives = 81/229 (35%), Gaps = 8/229 (3%)
Query: 653 QESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTE 712
+ ++ G + + + T +A Q + + + + ++ + + + +
Sbjct: 600 RMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQ 659
Query: 713 EKINLKKQNEECVTKL-TEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQS- 770
I + ++E K + EQ ++ + E+ EL L+A ++S
Sbjct: 660 LAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVEST 719
Query: 771 --HIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRE 828
+ + E A + EG QA L AQ + L +V K E E
Sbjct: 720 GNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLEL 779
Query: 829 SAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKS 877
+++Q N + + + + + T + A E ++ L+S
Sbjct: 780 EVSKAQQLAN----VEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQS 824
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 37.2 bits (85), Expect = 0.057
Identities = 41/347 (11%), Positives = 108/347 (31%), Gaps = 21/347 (6%)
Query: 482 QKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDL 541
Q + + + + ++ N + + + ++ + + +L + +
Sbjct: 371 QSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSV 430
Query: 542 KNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEAND 601
+ + + ++ L +++++ ++ + L + + N+ +K++
Sbjct: 431 IEQGGIQTV----DQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFK-----ER 481
Query: 602 KELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVV 661
+ E LR++ + +L Q + + L + L +
Sbjct: 482 WQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP 541
Query: 662 RLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQN 721
N SL+ + + + ++LK N + +K N
Sbjct: 542 SANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVIN 601
Query: 722 EECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHED 781
EE L++ ++ E + L N+ K+ Q + +
Sbjct: 602 EE---------ALSVTELDRVYGGLTTKVQESLK-KQEGLLKNIQVSHQEFSKMKQSNNE 651
Query: 782 ALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRE 828
A LR E + L A + + L + K E L R + +
Sbjct: 652 ANLREE--VLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNK 696
Score = 35.7 bits (81), Expect = 0.18
Identities = 37/294 (12%), Positives = 95/294 (32%), Gaps = 25/294 (8%)
Query: 692 YQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQIT 751
I+ +++ L + ++ T + R+ +E+ TV Q+
Sbjct: 384 VNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLI 443
Query: 752 EEKDCELSRLQANLCQLQSHIDKICQQHED------------------ALLRAEGDK-QQ 792
+E L R + L + +D+ D LRAEG +
Sbjct: 444 KELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRT 503
Query: 793 ALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVA 852
L A Q +++ + + + + + L ++
Sbjct: 504 VLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLS 563
Query: 853 KLEELKTRTEEEKAILERKISDLKSEREALVTE---SEELKVQLHLSEDKVDTVQAQLLE 909
L+E+K E + L+ D+ S+ + + E + + + + ++ E
Sbjct: 564 NLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQE 623
Query: 910 TARRLKEAENVGESLRKDLLDTKTHLADSNFEKD---KYAKSNKDLREMVKKVE 960
+ ++ + + ++ K ++N ++ A + + E+V ++
Sbjct: 624 SLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLK 677
Score = 35.3 bits (80), Expect = 0.19
Identities = 30/277 (10%), Positives = 87/277 (31%), Gaps = 15/277 (5%)
Query: 393 KLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNIEM 452
+ ++L + ++ + + + + + L + Q E
Sbjct: 438 TVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAE 497
Query: 453 LRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSD 512
++ L+K + ++ E S+ D + ++N ++ S + + +
Sbjct: 498 GTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNV 557
Query: 513 MDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDV 572
+ + L + L DL N D+ + L + E + +++ G +
Sbjct: 558 LKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGL 617
Query: 573 EAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHL 632
+++ L + + + I Q ++ + ++ + +L
Sbjct: 618 TTKVQESLKKQEGLLKNI--------------QVSHQEFSKMKQSNNEANLR-EEVLKNL 662
Query: 633 EQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELED 669
+ +L ++E L +VR + D
Sbjct: 663 ATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSD 699
Score = 34.2 bits (77), Expect = 0.45
Identities = 41/341 (12%), Positives = 106/341 (31%), Gaps = 19/341 (5%)
Query: 777 QQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQD 836
+ +L K + + + + VL L ++ + ++ +S
Sbjct: 367 VSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPA-AIEDVSGDTVPQSILT 425
Query: 837 RNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHL- 895
++ + + ++EL + + IL+ + L E + K +
Sbjct: 426 KSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRT 485
Query: 896 -SEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLRE 954
S + ++A+ L +A +++ + + + + +
Sbjct: 486 PSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANP 545
Query: 955 MVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIR 1014
SE + +++ L ++ E++ L N L + D+ S L + +
Sbjct: 546 AKTMQGSEVVNVLKSLLSNLDEVK-----KEREGLENDLKSVNFDMTSKFLTALAQDGV- 599
Query: 1015 LDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSH--QLSLL 1072
+E E+++ L + E L + + S Q +
Sbjct: 600 --------INEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNE 651
Query: 1073 QRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEE 1113
+E V+++LA + + V K +L +
Sbjct: 652 ANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVR 692
Score = 33.8 bits (76), Expect = 0.55
Identities = 31/244 (12%), Positives = 75/244 (30%), Gaps = 5/244 (2%)
Query: 1296 KAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAM 1355
+ Q + + IK+L + + + ++ + + + L K + S +E
Sbjct: 433 QGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS-NELY 491
Query: 1356 DQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKL----MKCRESGARLDAEKRALQDEL 1411
E + R + V E D + E A + + A +
Sbjct: 492 KPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQG 551
Query: 1412 SRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLK 1471
S + L ++ +++ L+ L+ ++ Q I T L
Sbjct: 552 SEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELD 611
Query: 1472 TTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKR 1531
L ++ + + L IQ + ++ + + L+ L + +N
Sbjct: 612 RVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVE 671
Query: 1532 VLQE 1535
++
Sbjct: 672 LVAN 675
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 36.3 bits (85), Expect = 0.086
Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 822 LDRIKRESAGRSEQ-DRNTINTLREQLNRTVAKLEELKT-RTEEEKAILERKISDLKSER 879
+ R + D + L ++ +L+E++T R + K + + E+
Sbjct: 11 PEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----PEEK 66
Query: 880 EALVTESEELKVQLHLSEDKVDTVQAQLLETARRL 914
EAL+ + L + E+ + +A+L ++
Sbjct: 67 EALIARGKALGEEAKRLEEALREKEARLEALLLQV 101
Score = 30.6 bits (70), Expect = 5.1
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 25/115 (21%)
Query: 1270 DPEIVRKGVRN-----LMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQ 1324
+PE+ + +R ++ + ++RE +LK Q ++ E ++ ++ +A
Sbjct: 10 EPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAK-------RVPKAP 62
Query: 1325 QTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNV 1379
EEK AL A + E + E L+ ++ L L +
Sbjct: 63 ------PEEKEAL-------IARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 36.2 bits (84), Expect = 0.095
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL---LDRSDMNEQISKYEITIEA 599
NA +A ++ Q+ E + + + G + +L LDR E Y + ++A
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVI-----SVLTSGLDR----ESYPTYTLVVQA 193
Query: 600 NDKELQRL 607
D + + L
Sbjct: 194 ADLQGEGL 201
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 35.4 bits (82), Expect = 0.18
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL---LDRSDMNEQISKYEITIEA 599
N L+ +L+Q+ EE L I + G + L+ LDR E+ +Y +T++A
Sbjct: 149 NGVLSYSILKQDPEEPIPNLFTINRETGVI-----SLIGTGLDR----EKFPEYTLTVQA 199
Query: 600 NDKELQRL 607
D E L
Sbjct: 200 TDLEGAGL 207
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 34.6 bits (79), Expect = 0.28
Identities = 16/95 (16%), Positives = 36/95 (37%)
Query: 845 EQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQ 904
++L EL+T +++ ++ + DLK S + +++ ++K+ Q
Sbjct: 75 DELGVLCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQ 134
Query: 905 AQLLETARRLKEAENVGESLRKDLLDTKTHLADSN 939
Q + L E E + D + S+
Sbjct: 135 KQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSS 169
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo
sapiens} PDB: 1st6_A
Length = 1066
Score = 34.8 bits (78), Expect = 0.32
Identities = 92/868 (10%), Positives = 258/868 (29%), Gaps = 20/868 (2%)
Query: 258 LVALSAGSSATNAEKDKLVKENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTL 317
++ + LV + +K + VL S K + +EE LK +
Sbjct: 174 MIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFT 233
Query: 318 EARVEEA-DQNVLLVEEMQQELELLQNTLRDIARAVIQDAEGKDIPSRPAPLKRHATFSA 376
++ ++ + +++ + + + + + + + K ++ A+
Sbjct: 234 VEKMSAEINEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGD 293
Query: 377 RPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQL 436
+I+ + + ++ + + + ++ +
Sbjct: 294 AGEQAIRQILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGSSPVAMQKA 353
Query: 437 AQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQ 496
QV + + L +E + A+ +K+ I + +++ + L +I +L
Sbjct: 354 QQVSQGLDVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALA 413
Query: 497 SEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKE 556
+ + D R+ LR +++ + + + ++ A+ L +Q
Sbjct: 414 EARKIAELC-----DDPKERDDILRSLGEISALTSKLADLRRQGKGDSPEARALAKQVAT 468
Query: 557 EMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRS 616
+Q L ++ + + L+ Q T++ ++ +A
Sbjct: 469 ALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHR 528
Query: 617 DKESLEAILFDT-QSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQ 675
+ + ++ D QL + + +L L+D + R Q
Sbjct: 529 LANVMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKARMQ 588
Query: 676 ETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQV 735
E V ++ + + ++
Sbjct: 589 EAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKLGATAEKAA 648
Query: 736 RAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHI--DKICQQHEDALLRAEGDKQQA 793
K Q + + EL+ + ++ ++ +H + + D +
Sbjct: 649 AVGTANKSTVEGIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEK 708
Query: 794 LLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAK 853
+ + + L + ++++ + T R VAK
Sbjct: 709 MTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAK 768
Query: 854 LEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQA--QLLETA 911
E + + + ++ +L +V +++ + + + + + ++L
Sbjct: 769 REVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAV 828
Query: 912 RRLKEA---------ENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESE 962
+++EA + + L D E + E ++ +
Sbjct: 829 AKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQ 888
Query: 963 KRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKV 1022
K + + + + + N + + +A L E+ + + +
Sbjct: 889 KAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALI 948
Query: 1023 TLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVED 1082
+ E + ++ ++ L QV + +S QL +L K ++
Sbjct: 949 QCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGR 1008
Query: 1083 LARLKQKYEQSVEMNNRVNKNLEDLVKE 1110
++ EQ+ EM +NL VKE
Sbjct: 1009 TNISDEESEQATEMLVHNAQNLMQSVKE 1036
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 34.2 bits (79), Expect = 0.35
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 289 LKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQEL 338
+ S + A++ E +R EELL+ A +E + + ++EL
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 50
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 33.9 bits (77), Expect = 0.37
Identities = 38/280 (13%), Positives = 96/280 (34%)
Query: 1320 MAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNV 1379
M ++ M+ L+ +K + + +A + + Q +EL L++K+ E L
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 1380 SEEKSQGDDKLMKCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLL 1439
SE +KL + +A+ +L + E + + + + + +
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 1440 QEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQ 1499
E E + ++ R + + E + K + + E + + +++ +
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 1500 RNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQD 1559
+ E++K + L S E + ++ D + + L + +
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 1560 DLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEE 1599
+ L++ I DL D + K + + +
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
Score = 31.5 bits (71), Expect = 2.2
Identities = 41/283 (14%), Positives = 102/283 (36%)
Query: 1293 DDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQS 1352
D +K Q LK + ++ D + A+ + L++E +L+ KL T+ + S
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 1353 EAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDELS 1412
EA+ E+L+ +K E +++++ +++L + +E A + +
Sbjct: 62 EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121
Query: 1413 RTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKT 1472
+E + +E + E + ++ L+E + + E R + +E +
Sbjct: 122 ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 181
Query: 1473 TIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRV 1532
+ + +++L+ S E++K L L AE
Sbjct: 182 RAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 241
Query: 1533 LQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDL 1575
+ + + S+ +L + + + ++ +
Sbjct: 242 AERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 31.2 bits (70), Expect = 3.1
Identities = 38/271 (14%), Positives = 101/271 (37%)
Query: 420 QQVTSLTSQLDQTKAQLAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLD 479
+++ L + + + +K+A + L E +L+K + + ++ + L
Sbjct: 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALK 65
Query: 480 KVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANE 539
Q+ K +++ L + ++D + L + +
Sbjct: 66 DAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESER 125
Query: 540 DLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEA 599
+K + + E+ E + L + D + + E + + + + E E
Sbjct: 126 GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL 185
Query: 600 NDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQ 659
++ + L+E++ ++ ++ +SLEA ++ + + + L +++E + E +
Sbjct: 186 SEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS 245
Query: 660 VVRLNKELEDTEKRAQETKASLVQQASGLDA 690
V +L K ++D E K + LD
Sbjct: 246 VTKLEKSIDDLEDELYAQKLKYKAISEELDH 276
Score = 30.0 bits (67), Expect = 6.1
Identities = 33/266 (12%), Positives = 91/266 (34%)
Query: 391 ETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVKNI 450
+ + + + ++ ++ +++ + +LD+ L + E K
Sbjct: 19 LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78
Query: 451 EMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRIN 510
+ ++L + + E ++ L + K + + +++ +
Sbjct: 79 TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDE 138
Query: 511 SDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKG 570
M+ +E++L+ + + L + E E+ E + A +E+
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIK 198
Query: 571 DVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQS 630
V ++ L +++ KYE I+ +L+ + + LE + D +
Sbjct: 199 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258
Query: 631 HLEQSDVKKEQLEHEVQELLVKQESL 656
L +K + + E+ L S+
Sbjct: 259 ELYAQKLKYKAISEELDHALNDMTSI 284
Score = 30.0 bits (67), Expect = 6.2
Identities = 40/279 (14%), Positives = 100/279 (35%)
Query: 1272 EIVRKGVRNLMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQ 1331
+ ++K ++ L D+ +A +A + K L D K+ + +
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 1332 EEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLM 1391
E + KL + A + N +Q E++ + L+ ++ + +
Sbjct: 62 EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121
Query: 1392 KCRESGARLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQE 1451
+ +++ + ++++ E ++ + + + + + L E++L + +E
Sbjct: 122 ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 181
Query: 1452 RCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQS 1511
R E LEE ++ + L E+ S E + EI+ L L + ++
Sbjct: 182 RAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 241
Query: 1512 NCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQ 1550
+ +L+K + E+E + + L
Sbjct: 242 AERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 34.0 bits (78), Expect = 0.41
Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 13/174 (7%)
Query: 570 GDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQ 629
G++ + ++ + ++ I+ +K Q++ E + E +E L +
Sbjct: 135 GEIAKFLSLKPSEKLETVAKLLG----IDEFEKCYQKMGEIVKEYEKRLERIEGELNYKE 190
Query: 630 SHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLD 689
L+ + LE E ++L E L ++ R + +
Sbjct: 191 ESLKARLKEMSNLEKEKEKLTKFVEYLD--------KVRRIFGRNGFQAYLREKYVPLIQ 242
Query: 690 ADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKL 743
S V + ++ + N EQ+ AL +L
Sbjct: 243 KYLNEAFSEFDLPYSF-VELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRL 295
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 34.5 bits (79), Expect = 0.43
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL---LDRSDMNEQISKYEITIEA 599
N L+ +L+Q+ EE L I + G + L+ LDR E+ +Y +T++A
Sbjct: 298 NGVLSYSILKQDPEEPIPNLFTINRETGVI-----SLIGTGLDR----EKFPEYTLTVQA 348
Query: 600 NDKELQRL 607
D E L
Sbjct: 349 TDLEGAGL 356
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 34.3 bits (78), Expect = 0.44
Identities = 47/368 (12%), Positives = 117/368 (31%), Gaps = 41/368 (11%)
Query: 503 QNELDRINSDMDAREVELR--GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQT 560
Q E+ S +A + E R L E+ L KL EL+ + +
Sbjct: 258 QQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAE-KLTSELITHICKSLPL 316
Query: 561 LLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKES 620
L I+++ + E+++ +D + + + I + + +
Sbjct: 317 LENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDK------VNAFNQDI------TAL 364
Query: 621 LEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKAS 680
++ + + + + + + L+++++ E +A +
Sbjct: 365 MQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKI---LSRKIQKFENQAAAAELP 421
Query: 681 LVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEE--------K 732
+ + QI L++ + + +T+ ++ + K EE K
Sbjct: 422 GFVNYRTFETIVKQQIKALEEPAVDMLHTVTDM---VRLAFTDVSIKNFEEFFNLHRTAK 478
Query: 733 EQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQ 792
++ ++ K I E A + E K+
Sbjct: 479 SKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSATDSSMEEIFQHLMAYHQEASKRI 538
Query: 793 ALLIAQQDQ----KAIQDRLSQVLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLN 848
+ I Q + +L + + +L ++K T + +E + S++ R+ L
Sbjct: 539 SSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDK--------RKFLK 590
Query: 849 RTVAKLEE 856
+A+L +
Sbjct: 591 ERLARLTQ 598
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 34.1 bits (77), Expect = 0.50
Identities = 10/66 (15%), Positives = 27/66 (40%)
Query: 280 SELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEARVEEADQNVLLVEEMQQELE 339
L+ + ++ + + K E ++ TL+++ + D N +Q+++
Sbjct: 16 QMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQ 75
Query: 340 LLQNTL 345
L+ L
Sbjct: 76 QLEQML 81
Score = 32.9 bits (74), Expect = 1.0
Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 15/173 (8%)
Query: 588 EQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQ 647
+ + K +E K ++ LQ+ +S + ++ + K +QLE +
Sbjct: 23 QDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLT 82
Query: 648 ELLVKQESLKGQVVRLNKELEDTE-----------KRAQETKASLVQQASGLDADYQNQI 696
L + S+ ++ L +E + KR Q+ LD +N I
Sbjct: 83 ALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICLDR-LENWI 141
Query: 697 SNLKK---QNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHAT 746
++L + Q + + KL E + + + + V +E++ + +
Sbjct: 142 TSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSA 194
Score = 32.5 bits (73), Expect = 1.4
Identities = 27/228 (11%), Positives = 70/228 (30%), Gaps = 44/228 (19%)
Query: 1281 LMQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETK 1340
+ ++ +E+ D++ Q L++++K + + + ++ +Q+ ++
Sbjct: 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNY-KTLKSQGDMQDLNGNNQSV 69
Query: 1341 LSQTKAAANSQSEAMDQKNEEL-QHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGAR 1399
Q A+DQ + L + +E +++E
Sbjct: 70 TRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDE----------------E 113
Query: 1400 LDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRN 1459
L KR +Q++ + L +L+ +
Sbjct: 114 LADWKR--------------------------RQQIACIGGPPNICLDRLENWITSLAES 147
Query: 1460 ITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSL 1507
++ L+ +++ + L I L RNLM ++
Sbjct: 148 QLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSAF 195
Score = 32.5 bits (73), Expect = 1.4
Identities = 23/186 (12%), Positives = 69/186 (37%), Gaps = 11/186 (5%)
Query: 629 QSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGL 688
+ HL+ + + LE +++ + Q+ L K D + ++ Q+ L
Sbjct: 19 EQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTL-KSQGDMQDLNGNNQSVTRQKMQQL 77
Query: 689 DADYQNQISNLKKQNEECVTKLTEEKINLKK-QNEECVTKLTEEK-EQVRAALEKKLHAT 746
+ ++ L + V++L ++ Q +L + K Q A + +
Sbjct: 78 ----EQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNIC 133
Query: 747 VKQITEEKDCELSRLQANLCQLQSHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQD 806
+ ++ + ++ L + Q + I K+ + + + + Q ++ ++ + ++
Sbjct: 134 LDRL----ENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRN 189
Query: 807 RLSQVL 812
+
Sbjct: 190 LMKSAF 195
Score = 32.1 bits (72), Expect = 1.8
Identities = 26/208 (12%), Positives = 69/208 (33%), Gaps = 31/208 (14%)
Query: 1485 SAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASL 1544
+A TE + ++ +++ + + + ++ LQ + + D +
Sbjct: 8 AAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQ 67
Query: 1545 AELRRQQVNRLENQDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALE 1604
+ R++ L+ M AL + + + + M Q+T+ ++ +
Sbjct: 68 SVTRQKMQ-------QLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLT----DEELAD 116
Query: 1605 TKLSQTKAAANSQNELEVKEVAR-----AGLESQLRMSQWPSESPMNGGDSEEITKLCRE 1659
K Q A + + + A + Q R ++I KL
Sbjct: 117 WKRRQQIACIGGPPNICLDRLENWITSLAESQLQTR---------------QQIKKLEEL 161
Query: 1660 RSELRNKLENLHDKIQMLRDQLNSEIKR 1687
+ ++ K + + ML +++ +
Sbjct: 162 QQKVSYKGDPIVQHRPMLEERIVELFRN 189
>1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG
MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A*
2aey_A* 2aez_A*
Length = 543
Score = 34.1 bits (78), Expect = 0.51
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 594 EITIEANDKEL-QRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEV 646
+ I+ N K+L Q E++ LR ++ +L+ S LE + Q + +
Sbjct: 316 ALWIDRNGKQLIQWPVEEIEELRQNQVNLQNKNLKPGSVLEIHGIAASQADVTI 369
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 33.1 bits (76), Expect = 0.55
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL---LDRSDMNEQISKYEITIEA 599
NA +A ++ Q+ E + + + G + +L LDR E Y + ++A
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVI-----SVLTSGLDR----ESYPTYTLVVQA 193
Query: 600 NDKELQRL 607
D + + L
Sbjct: 194 ADLQGEGL 201
>4dag_A Fusion glycoprotein F0; viral protein, MPV fusion protein, immune
system, antibody structure, FAB structure, vaccine; HET:
NAG BMA MAN; 3.39A {Human metapneumovirus}
Length = 415
Score = 33.6 bits (76), Expect = 0.65
Identities = 17/135 (12%), Positives = 50/135 (37%), Gaps = 2/135 (1%)
Query: 462 KNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELR 521
+ + E+N + +L + + V + + + +++ K F+ L + +L+
Sbjct: 112 RLESEVNAIKGALKTTNEAVSTLGNGVRVLATAVRELKEFVSKNLTSAINKNKCDIADLK 171
Query: 522 GKEDMNRRLREDLLIANEDLKNAKLAKELLEQN--KEEMQTLLAHIEKSKGDVEAEMERL 579
++ R L + + NA + + E+ ++++ S G ++ +E
Sbjct: 172 MAVSFSQFNRRFLNVVRQFSDNAGITPAISLDLMTDAELARAVSYMPTSAGQIKLMLENR 231
Query: 580 LLDRSDMNEQISKYE 594
+ R +
Sbjct: 232 AMVRRKGFGILIGVY 246
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 33.4 bits (75), Expect = 0.69
Identities = 25/175 (14%), Positives = 64/175 (36%), Gaps = 6/175 (3%)
Query: 581 LDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKE 640
++ DM Q+ ++ + + +L+ + + D + I+ +T +
Sbjct: 214 IENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLS 273
Query: 641 QLEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLK 700
L+H LLV+ + E ++ + + L D + + +
Sbjct: 274 ILQH---LLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMI 330
Query: 701 KQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKD 755
+ + V K + L+K+ + +T E + ++ +E ++ + EKD
Sbjct: 331 DKTK--VEKSEAKATELEKKLDSELTARHELQVEM-KKMENDFEQKLQDLQGEKD 382
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 33.5 bits (77), Expect = 0.72
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL---LDRSDMNEQISKYEITIEA 599
N L +L Q + I GD+ + LDR E++ +Y + I+A
Sbjct: 142 NGMLRYRILSQAPSTPSPNMFTINNETGDI-----ITVAAGLDR----EKVQQYTLIIQA 192
Query: 600 NDKELQ 605
D E
Sbjct: 193 TDMEGN 198
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1
b.2.5.5 d.93.1.1
Length = 575
Score = 33.7 bits (76), Expect = 0.73
Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 44/226 (19%)
Query: 1282 MQQVAQIERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKL 1341
+ + +++ + ++K ++ EIK L D LQ+E Y + K
Sbjct: 1 LDKQKELDSKVRNVKDKVMCIEHEIKSLED------------------LQDE-YDFKCKT 41
Query: 1342 SQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLD 1401
Q + + DQK E+ L++ L L+ V +
Sbjct: 42 LQNREHETNGVAKSDQKQEQ-LLLKKMYLMLDNKRKEVVHK------------------- 81
Query: 1402 AEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNIT 1461
+ + L+ TE L + +Q+ + L +LQ ++
Sbjct: 82 -----IIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQ 136
Query: 1462 GLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSL 1507
+ ++ L+ + + + + L +L + L+ +S
Sbjct: 137 QVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSSF 182
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 33.4 bits (77), Expect = 0.76
Identities = 16/124 (12%), Positives = 42/124 (33%), Gaps = 24/124 (19%)
Query: 1248 TSPSRRYSPVRGGEGGEGLIDV-----DPEIVRKGVRN--------LMQQVAQIERERDD 1294
+ Y R G L+D+ PE + + + + +E
Sbjct: 22 QDRNLLYEHAREGYSALPLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQ 81
Query: 1295 LKAMTQALKREIKDLS-----------DAHTQESNKMAQAQQTMRALQEEKYALETKLSQ 1343
L+ ++L+ E + ++ ++ Q+ + + R ++++ L K +Q
Sbjct: 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQ 141
Query: 1344 TKAA 1347
+
Sbjct: 142 LEEQ 145
Score = 31.1 bits (71), Expect = 4.3
Identities = 11/138 (7%), Positives = 31/138 (22%), Gaps = 27/138 (19%)
Query: 840 INTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDK 899
+ +L L R E ++ I E L + L+
Sbjct: 43 MESLCAYPEDAARAL---DLRKGELRSKDLPGIISTWQELRQLREQIRSLE--------- 90
Query: 900 VDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKV 959
+ E V + + + +++R+ + +
Sbjct: 91 -----------EEKEAVTEAVRALVVNQ----DNSQVQQDPQYQSLRARGREIRKQLTLL 135
Query: 960 ESEKRDQARTIDEGLQKI 977
++ ++
Sbjct: 136 YPKEAQLEEQFYLRALRL 153
Score = 30.3 bits (69), Expect = 7.5
Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 36/144 (25%)
Query: 1288 IERERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAA 1347
+E + +AL +L + + +E L ++ +
Sbjct: 43 MESLCAYPEDAARALDLRKGELRSKDLPG----------IISTWQELRQLREQIRSLEEE 92
Query: 1348 ANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRAL 1407
+ +EA+ D+ ++ L A R +
Sbjct: 93 KEAVTEAVRAL------------------------VVNQDNSQVQQDPQYQSLRARGREI 128
Query: 1408 QDELSRTEARVTKLE--LQRVALE 1429
+ +L+ + +LE AL
Sbjct: 129 RKQLTLLYPKEAQLEEQFYLRALR 152
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 33.5 bits (76), Expect = 0.76
Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 4/155 (2%)
Query: 462 KNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELR 521
+ + +I ++ E++ VQ S + + +++S + ++ E+ + + L+
Sbjct: 121 QARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIVPSIARLGCEAAGLQ 180
Query: 522 GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLL 581
+ + E I +++ + + L+ +T + I + + ++ LL
Sbjct: 181 LGIALTQHYSELTNIFGDNIGSLQEKGIKLQGIASLYRTNITEIFTTSTVDKYDIYDLLF 240
Query: 582 DRSDMNEQI----SKYEITIEANDKELQRLQEQLA 612
S I + Y IT++ L RL
Sbjct: 241 TESIKVRVIDVDLNDYSITLQVRLPLLTRLLNTQI 275
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 32.4 bits (74), Expect = 0.95
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEAND 601
NA L + +Q ++ + +I+ KGD+ + LLDR + KYE+ IEA D
Sbjct: 142 NALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDR--ETLENPKYELIIEAQD 198
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 33.0 bits (76), Expect = 0.99
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 840 INTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKV-------- 891
I +RE L R E EK +I L +E + E L+
Sbjct: 4 IKLIRENPELVKNDL---IKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60
Query: 892 --QLHLSEDKVDTVQAQLLETARRLKEAENVGESLRKDL 928
+ + VD + A+ E +R+ E EN E L+K +
Sbjct: 61 IGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99
Score = 29.9 bits (68), Expect = 8.9
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 274 KLVKENSELKSQVTVLKSENNAMANE---SKQKEERVEELLKRIHTLEARVEEADQNVLL 330
KL E ++ L+ E N +A E ++K E V+ELL + + R+ E + V
Sbjct: 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEE 94
Query: 331 VEEMQQELEL 340
+++
Sbjct: 95 LKKKIDYYLW 104
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 32.6 bits (72), Expect = 1.3
Identities = 28/236 (11%), Positives = 76/236 (32%), Gaps = 8/236 (3%)
Query: 262 SAGSSATNAEKDKLVKENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHT----- 316
A +A E ++ K N++ K+ + NNA + +++
Sbjct: 8 QAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAK 67
Query: 317 LEARVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQ-DAEGKDIPSRPAPLKRHATFS 375
L + + + + +L+ ++ I A+ + + + + P ++ +
Sbjct: 68 LAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLVYD 127
Query: 376 ARPSTSIKPSVTFRKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQ 435
P+ S+T + A+ + + D+ + + Q + +
Sbjct: 128 LEPNA--NLSLTTDGKFLKASAVDDAFSKSTSKAKYDQKILQLDDLDITNLEQSNDVASS 185
Query: 436 LAQVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKI 491
+ G + + + + E + + +NL N ++SKI
Sbjct: 186 MELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKISKI 241
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 32.6 bits (74), Expect = 1.3
Identities = 27/241 (11%), Positives = 77/241 (31%), Gaps = 14/241 (5%)
Query: 646 VQELLVKQESLKGQVVRLNKELE-DTEKRAQETKASLVQQASGLDADYQNQISNLKKQNE 704
+ LL + ++ + RL+ + + A+E A + + + +
Sbjct: 32 ITYLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEED 91
Query: 705 ECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQAN 764
++ + E +L + R ++ K + E+ +L
Sbjct: 92 GDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAK-----GRSHATAQEEILKLSEV 146
Query: 765 LCQLQ---SHIDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCT 821
Q + D + + R ++ + + + K + + E
Sbjct: 147 FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTW 206
Query: 822 LDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDL-KSERE 880
+ + SE ++ + E+++R + KL++++ T ++ + E +
Sbjct: 207 FNAAIAMNKPWSE----KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 262
Query: 881 A 881
A
Sbjct: 263 A 263
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 32.3 bits (74), Expect = 1.4
Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 13/187 (6%)
Query: 1206 RYRAAQLHAESLLEAREKSHRQQVNRLENQLDGRAS--HAGGKMTSPSRRYSPVRGGEGG 1263
R + L E+LL E+ H+QQ + Q+ + + ++
Sbjct: 19 REKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLV 78
Query: 1264 EGLIDVDPEIVRK-GVRNLMQQVAQIERERDDLKAMTQALKRE-----IKDLSDAHTQES 1317
E +P K + ++ + + D K + + RE I + S ++
Sbjct: 79 EVRSMANPPAAVKLALESIALLLGES---TTDWKQIRSIIMRENFIPTIVNFSAEEISDA 135
Query: 1318 --NKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELT 1375
KM + + + E + + + ++ LR ++ LE
Sbjct: 136 IREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDD 195
Query: 1376 LSNVSEE 1382
+ ++
Sbjct: 196 AKDNQQK 202
Score = 32.0 bits (73), Expect = 2.0
Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 19/186 (10%)
Query: 860 RTEEEKAILERKISD--LKSEREALVTESEELKVQLHLSEDKVDTVQAQLLETARRLKEA 917
R +E + R I + + + EAL+ E+L Q + DK +V+ L + + EA
Sbjct: 6 RLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEA 65
Query: 918 ENVGESLRKDLLDTKTHLADSNFEKDKYAKSN----KDLREMVKKV----------ESEK 963
+N +S++K L +A+ +S + K++ +
Sbjct: 66 QNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIV 125
Query: 964 RDQARTIDEGL---QKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSE 1020
A I + + K + N+ + + + L + ++
Sbjct: 126 NFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPL 185
Query: 1021 KVTLQE 1026
+ LQ+
Sbjct: 186 RNELQK 191
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 31.7 bits (72), Expect = 1.9
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 584 SDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQS 635
+ E++ E ++D ++Q L E + L+ L D + +
Sbjct: 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59
Score = 30.5 bits (69), Expect = 5.0
Identities = 6/66 (9%), Positives = 23/66 (34%)
Query: 1428 LEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLKTTIDQLNLTLERASAG 1487
+ + + L+ + + + +L E + +T L+++ ++ T +
Sbjct: 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANKIS 69
Query: 1488 ETELRG 1493
+
Sbjct: 70 PITGKD 75
Score = 30.5 bits (69), Expect = 5.3
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 1508 NSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVN 1553
Q E+++ L+++ S + + + L E Q + L++Q V+
Sbjct: 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51
Score = 29.4 bits (66), Expect = 9.8
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 552 EQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQL 611
+ ++ +Q +L E+ L + QI + N + + RLQ+QL
Sbjct: 1 DSGQKTVQKILE-----------EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49
Query: 612 ASLRS 616
+R
Sbjct: 50 VDIRQ 54
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A*
Length = 470
Score = 31.7 bits (73), Expect = 2.3
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 1659 ERSELRNKLENLHDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQALGDSLRT 1715
ER + + L + +I L D L RQ I RD E+ ++ GD RT
Sbjct: 417 ERQRIIDDLAKIEAEIADLEDILAKP--ERQRGIVRD-----ELAEIVDRHGDDRRT 466
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 31.2 bits (71), Expect = 2.3
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 12/62 (19%)
Query: 543 NAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLL---LDRSDMNEQISKYEITIEA 599
N L +L Q + I GD+ + LDR E++ +Y + I+A
Sbjct: 142 NGMLRYRILSQAPSTPSPNMFTINNETGDI-----ITVAAGLDR----EKVQQYTLIIQA 192
Query: 600 ND 601
D
Sbjct: 193 TD 194
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and
CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Length = 182
Score = 30.6 bits (69), Expect = 3.1
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1489 TELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTC 1540
+ L +I L+ +L S + K++ LQ L + + + L
Sbjct: 2 STLNAQIPELKSDLEKAS----ALNTKIRALQGSLENMSKLLKRQNDILQVV 49
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 31.5 bits (72), Expect = 3.4
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 1659 ERSELRNKLENLHDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQALGDSLRT 1715
ER ++ + L + I L L E L + RD E+ ++R GD RT
Sbjct: 638 ERDKIEAEYNELLNYISELETILADE--EVLLQLVRD-----ELTEIRDRFGDDRRT 687
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 31.0 bits (70), Expect = 3.4
Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 503 QNELDRINSDMDAREVELR--GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQT 560
Q ++++ + AR+ E R L + + L L+K L K +
Sbjct: 245 QADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEH--LAK-MLSKHLERVIKSRIPG 301
Query: 561 LLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKES 620
+ + I K+ ++E E+ RL + + I + + ++L R+ +
Sbjct: 302 IQSLINKTVLELETELSRLGKPIAHGTDSRVDPAIM-----ERRSAISKRLELYRAAQSE 356
Query: 621 LEAI 624
++A+
Sbjct: 357 IDAV 360
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A
{Staphylococcus aureus}
Length = 514
Score = 31.0 bits (71), Expect = 3.7
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 1659 ERSELRNKLENLHDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQALGDSLRTV 1716
+ L + + L I+ LR L++ + +E+ ++++ ++
Sbjct: 455 DIVALEGEHKELEALIKQLRHILDNHDALLNVIK-------EELNEIKKKFKSERLSL 505
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 31.3 bits (71), Expect = 3.7
Identities = 34/332 (10%), Positives = 94/332 (28%), Gaps = 31/332 (9%)
Query: 438 QVGREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQS 497
+ +ALVK+ E + + ++ +L +V+ + + L
Sbjct: 170 PLPPGVDALVKDGEEVVKGQELAPGVVSRLDG--VALYRFPRRVRVEYVKKERAGLRLPL 227
Query: 498 EKLFLQNELD------------RINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAK 545
+ ++ + +E LR +
Sbjct: 228 AAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVG 287
Query: 546 LAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQ 605
+ ++ E LA + + + + + +E + +
Sbjct: 288 MTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEE--GETVYLTLFLEWTEPKDY 345
Query: 606 RLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNK 665
R+Q + + + +EA + + +V E +K +V
Sbjct: 346 RVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFED 405
Query: 666 ELEDTEKRAQ-------ETKASLVQQASGLDADYQNQISNLKKQNE-------ECVTKLT 711
++E + + ++ D + + + + E + +L
Sbjct: 406 DVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLL 465
Query: 712 EEKINLKKQNEECVTKLTEEKEQVRAALEKKL 743
+E ++L+ +E + ++ RA K+L
Sbjct: 466 KE-LDLEALEKELLEEMKHPSRARRAKARKRL 496
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive
bacteria, quinolone target, DNA binding, DNA cleavage;
HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A*
3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A*
3raf_A*
Length = 496
Score = 30.9 bits (71), Expect = 3.8
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 1659 ERSELRNKLENLHDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQALGDSLRT 1715
+ L+ + L +KI ML + E + + E++++++ +
Sbjct: 431 DVVVLQEEEAELREKIAMLAAIIGDERTMYN--LMKK-----ELREVKKKFATPRLS 480
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle
disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Length = 481
Score = 31.2 bits (70), Expect = 3.9
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 15/62 (24%)
Query: 466 EINEMVESLNSNLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKED 525
E+ + S+++ LDK++++NS+L K+N L S +RE +L +ED
Sbjct: 435 ELGNVNNSISNALDKLEESNSKLDKVNVKLTS---------------TSSREQKLISEED 479
Query: 526 MN 527
+N
Sbjct: 480 LN 481
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 30.7 bits (69), Expect = 4.5
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 12/108 (11%)
Query: 503 QNELDRINSDMDAREVELR--GKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQT 560
Q ++D A E + R L + + L+ L ++L ++ +
Sbjct: 239 QKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPY--LQK-VLNQQLTNHIRDTLPG 295
Query: 561 LLAHIEKSKGDVEAEMERLLLDRSDMNEQ-------ISKYEITIEAND 601
L ++ +E E+E R D + + Y EA
Sbjct: 296 LRNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALS 343
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 30.3 bits (69), Expect = 5.1
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 581 LDRSDMNEQISKYEITIEANDK 602
+DR E +Y + I+A D
Sbjct: 171 MDR----EAKEEYLVVIQAKDM 188
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 30.1 bits (68), Expect = 5.2
Identities = 15/105 (14%), Positives = 37/105 (35%)
Query: 582 DRSDMNEQISKYEITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQ 641
+ EQ + E E +E Q + S E + + +
Sbjct: 4 GEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAA 63
Query: 642 LEHEVQELLVKQESLKGQVVRLNKELEDTEKRAQETKASLVQQAS 686
+ ++ EL K ++ + +RL + E+ +R ++ + + +
Sbjct: 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRA 108
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS,
serrs, translation, ATP-binding, nucleotide-binding,
structural genomics; HET: ATP; 1.95A {Trypanosoma brucei}
PDB: 3lsq_A*
Length = 484
Score = 30.4 bits (69), Expect = 5.6
Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 23/132 (17%)
Query: 1268 DVDPEIVRKGVRN------LMQQVAQIERERDDLKAMTQALKREIKDLS----------- 1310
+ I+R+ R ++ + + +++ + +T+A K+ I S
Sbjct: 16 ETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKE 75
Query: 1311 ---DAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLRE 1367
D + ++ + +L Q + Q + ++ ++L+ R+
Sbjct: 76 ADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERD 135
Query: 1368 KVLTLELTLSNV 1379
K++ L + N+
Sbjct: 136 KLM---LNVGNI 144
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase,
nucleo binding; HET: DNA; 2.60A {Colwellia
psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Length = 500
Score = 30.6 bits (70), Expect = 5.6
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 1659 ERSELRNKLENLHDKIQMLRDQLNSEIKRRQLYIYRDTRAGKEMQQLRQALGDSLRT 1715
E ++ ++ + L D I L L + + + + + E+ +R GD RT
Sbjct: 440 EHDKILSEYKALLDLIAELMHILATPARLME--VICE-----ELVAIRDEFGDERRT 489
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 30.3 bits (69), Expect = 6.1
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 277 KENSELKSQVTVLKSENNAMANESKQKEERVEELLKRIHTLEA 319
+ + LK ++ LK + A+ + K E ++EL + + E
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.2 bits (69), Expect = 6.4
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 840 INTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELK 890
IN +RE+ + +L TR +E +++++ + +L R ++ E L+
Sbjct: 4 INLIREKPDYVKERL---ATRDKELVSLVDK-VLELDKRRREIIKRLEALR 50
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 30.0 bits (67), Expect = 6.5
Identities = 23/171 (13%), Positives = 66/171 (38%), Gaps = 13/171 (7%)
Query: 552 EQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQL 611
E + E + L + D E ++L + + ++++ IEA ++ ++ +EQ
Sbjct: 10 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 69
Query: 612 ASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTE 671
+ + + + E ++ + +++ + L + + +L ++L
Sbjct: 70 QTQEKCSK-----EYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQA 124
Query: 672 KRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEEKINLKKQNE 722
+E + + + L+K ++ + LT++ +K NE
Sbjct: 125 SDNREIDKRM--------NSLKPDLMQLRKIRDQYLVWLTQKGARQRKINE 167
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 30.3 bits (69), Expect = 6.8
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 806 DRLSQVLKELEEEKCTLDRIKRE-SAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEE 864
LKELE++ LD +++E A Q+ +LR+ R ++E+ K +E+
Sbjct: 390 FTTPPNLKELEQK---LDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446
Query: 865 KA 866
+
Sbjct: 447 QG 448
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 29.9 bits (66), Expect = 7.1
Identities = 12/78 (15%), Positives = 31/78 (39%)
Query: 511 SDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKG 570
S+ ++ R E + +R +L A+L+ +L E + I+++ G
Sbjct: 212 SNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDGVLGVRAEYLAAARQTIDETYG 271
Query: 571 DVEAEMERLLLDRSDMNE 588
+ + + ++ +N
Sbjct: 272 SLGGYLRDAGISQATVNR 289
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo
sapiens}
Length = 522
Score = 30.1 bits (68), Expect = 7.4
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 26/130 (20%)
Query: 1270 DPEIVRKGVRN------LMQQVAQIERERDDLKAMTQALKREI--------------KDL 1309
DP ++R+ L+ Q+ + + E + L + + +
Sbjct: 15 DPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPV 74
Query: 1310 SDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQSEAMDQKNEELQHLREKV 1369
D + N ++ T AL K+SQ K EA+ + + E L +
Sbjct: 75 GDDESVPENVLSFDDLTADALANL------KVSQIKKVRLLIDEAILKCDAERIKLEAER 128
Query: 1370 LTLELTLSNV 1379
+ N+
Sbjct: 129 FENLREIGNL 138
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 30.4 bits (68), Expect = 7.6
Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 21/158 (13%)
Query: 1516 LKQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDL 1575
++LQ + + + ++ ++ + ++ R + + + K
Sbjct: 593 SERLQWEVEKYSFQVKFIKMIIEK-ELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSP 651
Query: 1576 SDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQNELEVKEVARAGLESQLR 1635
+D ++ N + A + E ++ + + L L
Sbjct: 652 NDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYL-------------LG 698
Query: 1636 MSQWPSESPMNGGDSEEITKLCRERSELRNKLENLHDK 1673
M W E KL +++ E +LENL
Sbjct: 699 MRIWSLTK-------ERYQKLLKQKQEKETELENLLKL 729
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 30.2 bits (69), Expect = 7.7
Identities = 8/70 (11%), Positives = 17/70 (24%), Gaps = 5/70 (7%)
Query: 1240 ASHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERERDDLKAMT 1299
+ S V I + + K +R + + I R + L
Sbjct: 365 PRYVDSSWEGISTDDGIVH-----SVRISGNKTLSLKEIRRINWENVGIIRNEEKLVKAI 419
Query: 1300 QALKREIKDL 1309
++
Sbjct: 420 NTYSSSTQNE 429
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 30.2 bits (68), Expect = 7.9
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 104 LPSTPLPSALDAAQAHL-REMREERIQDLNTALRRLDDERRENEKLRKMNSVY 155
+ P AL A L + +E L T ++ L E +++Y
Sbjct: 402 FNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELKSESNSKPSPDGTSALY 454
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 29.3 bits (66), Expect = 8.2
Identities = 14/80 (17%), Positives = 34/80 (42%)
Query: 600 NDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQ 659
+ KE + + Q + E + ++ EQ D + E++ + +L Q +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 660 VVRLNKELEDTEKRAQETKA 679
++R+ E+E+ +R +
Sbjct: 62 ILRVKAEMENLRRRTELDIE 81
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP:
h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 29.9 bits (66), Expect = 8.6
Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 5/136 (3%)
Query: 1490 ELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKRVLQERLDTCQASLAELRR 1549
+R ++ Q ++ LK + A+ + + L++
Sbjct: 69 NIRQQLADSQNKYKTSNRVIVETINILKPGLE---GAQQLDENYGHVSTELRRRIVTLKQ 125
Query: 1550 QQVNRLENQDDLKAMTQALKREIKDL-SDAHTQ-ESNKMAQAQQTMRALQEEKYALETKL 1607
+ ++ L+ Q E+K L D + + K + A+ + +E Y K
Sbjct: 126 RVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKH 185
Query: 1608 SQTKAAANSQNELEVK 1623
++ + + +
Sbjct: 186 LTQASSIDMHPDFQTT 201
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 29.2 bits (66), Expect = 9.4
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 581 LDRSDMNEQISKYEITIEAND 601
+DR E +Y++ I+A D
Sbjct: 171 MDR----ENREQYQVVIQAKD 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.124 0.321
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 24,239,596
Number of extensions: 1484958
Number of successful extensions: 6302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5479
Number of HSP's successfully gapped: 1167
Length of query: 1760
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1653
Effective length of database: 3,714,246
Effective search space: 6139648638
Effective search space used: 6139648638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (28.3 bits)