RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11582
(1760 letters)
>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage
T7 [TaxId: 10760]}
Length = 494
Score = 32.4 bits (72), Expect = 0.50
Identities = 21/131 (16%), Positives = 34/131 (25%), Gaps = 13/131 (9%)
Query: 641 QLEHEVQELLVKQES---------LKGQVVRLNKELEDTEKRAQETKASLVQQASGLDAD 691
+EH LL KQE ++ V L + ++ ET S Q G +
Sbjct: 5 DIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF 64
Query: 692 YQNQISNLKKQNEECVTKLTEEKINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQIT 751
+ + T K + + E + E A +
Sbjct: 65 CHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREPCELDT----REYVAGAPYTPVE 120
Query: 752 EEKDCELSRLQ 762
SR
Sbjct: 121 HVVFNPSSRDH 131
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 32.0 bits (71), Expect = 0.56
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 328 VLLVEEMQQELELLQNTLRDIARAVIQDAEGKDIPSRPAPLKR 370
+ +++++QE E L+N +RD AR DA I + P+ R
Sbjct: 1 MSELDQLRQEAEQLKNQIRD-ARKACADATLSQITNNIDPVGR 42
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 30.6 bits (68), Expect = 1.4
Identities = 12/77 (15%), Positives = 31/77 (40%)
Query: 511 SDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKG 570
S+ ++ R E + +R +L A+L+ +L E + I+++ G
Sbjct: 189 SNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDGVLGVRAEYLAAARQTIDETYG 248
Query: 571 DVEAEMERLLLDRSDMN 587
+ + + ++ +N
Sbjct: 249 SLGGYLRDAGISQATVN 265
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 31.1 bits (70), Expect = 1.4
Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 31/202 (15%)
Query: 1516 LKQLQK--LLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIK 1573
LK + + H E R L + L V L N D + + +
Sbjct: 318 LKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVA-LANIDPIIELIR--HAPTP 374
Query: 1574 DLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQNELEVKEVARAGLESQ 1633
+ + M + A L + L ++ A+A L+ +
Sbjct: 375 AEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLT-EQQAQAILDLR 433
Query: 1634 LRMSQWPSESPMNGGDSEEITKLCRERSELRNKLENLHDKIQMLRDQLNSEIKRRQLYIY 1693
L+ ++T L E +L ++ + L D+I L L S + ++
Sbjct: 434 LQ----------------KLTGL--EHEKLLDEYKELLDQIAELLRILGSADRLMEVIR- 474
Query: 1694 RDTRAGKEMQQLRQALGDSLRT 1715
+E++ +R+ GD RT
Sbjct: 475 ------EELELVREQFGDKRRT 490
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain
{Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 30.3 bits (68), Expect = 2.2
Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 10/147 (6%)
Query: 979 VRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKFLEIEKEKY 1038
VR +++ D +D+ ++ EL A+ + +++ + K E + E
Sbjct: 104 VRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELS 163
Query: 1039 NFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKYEQSVEMNN 1098
+ + + K+ + L K E
Sbjct: 164 VMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKP----------TMYIANVNEDGF 213
Query: 1099 RVNKNLEDLVKECEEKEVVLLDLCARL 1125
N L+ + + ++ V++ +CA +
Sbjct: 214 ENNPYLDRVREIAAKEGAVVVPVCAAI 240
>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 553
Score = 30.5 bits (69), Expect = 2.4
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 1078 NVVEDLARLKQKYEQSVEMNNRVNKNLEDLVKECEEKEV-VLLDLCARLGGAEERVRASS 1136
N D AR + + + +++ + K K+ L A G +
Sbjct: 72 NANWDDARFEAMISEGLARRDKLRNAFLAVYKAKNGKDFSEPLPEAATWTGDSTAFAEKA 131
Query: 1137 AHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHA 1170
+ L +DV + L+ +AA HA
Sbjct: 132 KSVGILATENEDVRSLRELLIIGLKGVAAYAEHA 165
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.7 bits (63), Expect = 6.3
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 607 LQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQEL 649
L+++ L E A L + L QS++++++L + V +L
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 43
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 172
Score = 27.9 bits (61), Expect = 7.6
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 938 SNFEKDKYAKSNKDLREMVKKVESEK 963
+ E + + KS L+ + ++ +E+
Sbjct: 146 NEEELEAFRKSASILKNAINEITAEE 171
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 28.6 bits (63), Expect = 9.2
Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 8/177 (4%)
Query: 1399 RLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCR 1458
RL+ ++ R + V K Q ++ ++ + + + + E
Sbjct: 583 RLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRF 642
Query: 1459 NITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKL-- 1516
N G + +Q+N S + E N+++ E L
Sbjct: 643 NKEGKPYYGSPNDEIAEQINDVKGATS--DEEDEESSHEDTENVINGPEELYGTYEYLLG 700
Query: 1517 KQLQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIK 1573
++ L + + L ++ + L L + + N DLKA + ++
Sbjct: 701 MRIWSL---TKERYQKLLKQKQEKETELENLLKLSAKDIWN-TDLKAFEVGYQEFLQ 753
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 28.3 bits (63), Expect = 9.9
Identities = 14/79 (17%), Positives = 31/79 (39%)
Query: 811 VLKELEEEKCTLDRIKRESAGRSEQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILER 870
V++EL EE + R E ++ ++ ++E + ++E L+
Sbjct: 322 VVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQL 381
Query: 871 KISDLKSEREALVTESEEL 889
+IS + + L+ E
Sbjct: 382 QISTVDLQISRLLQEQNSF 400
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.124 0.321
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,606,635
Number of extensions: 262220
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 199
Length of query: 1760
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1662
Effective length of database: 1,062,056
Effective search space: 1765137072
Effective search space used: 1765137072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.2 bits)