BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11584
(573 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TAF4|INT6A_XENLA Integrator complex subunit 6-A OS=Xenopus laevis GN=ints6-a PE=2
SV=1
Length = 883
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/433 (54%), Positives = 292/433 (67%), Gaps = 68/433 (15%)
Query: 24 AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
AGWKEN TFM ELKNLQ G+T LG +L+ FD+LN+NR+ +GID YGQGR+PFFLEP+
Sbjct: 64 AGWKENHATFMNELKNLQAVGLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFLEPS 123
Query: 84 VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVL---------Q 134
+I+VITDG KL+ A GVQ++ +LP++SP+PGSE+T+EPFRWDQRLF+LVL Q
Sbjct: 124 IIIVITDGSKLTTANGVQDELHLPLYSPLPGSELTKEPFRWDQRLFALVLRLPGASLVEQ 183
Query: 135 RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP 194
V D SPI AMC+VTGGRSY VTS R+L QC++SLVQKVQSGVVI+FEK GPDPP
Sbjct: 184 EQPPAVQFDESPITAMCDVTGGRSYSVTSQRILNQCLESLVQKVQSGVVIHFEKSGPDPP 243
Query: 195 PINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVG 254
+ + G + PV + G S WHNC KLIYV
Sbjct: 244 ILED----------------GLTDPVRSVG------SQPWHNCHKLIYV----------- 270
Query: 255 FWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLV 314
P P++ G P+G WPIPESFWPD + +LPPR++HP VKF+CT +P++
Sbjct: 271 -RPNPKT-----------GVPLGHWPIPESFWPDQNSPTLPPRTSHPVVKFSCTDSEPMI 318
Query: 315 IENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVN 374
I+ LPFDKYELEPSPLTQ+IL RK P CW VFVANS K S++GHPFGYLKAST L+ VN
Sbjct: 319 IDKLPFDKYELEPSPLTQFILERKSPHSCWPVFVANSAKYSELGHPFGYLKASTALNCVN 378
Query: 375 LFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQM 434
LFV+PYNYP LPL+DD FK+H+ K + +WR F+ Y+ TMP YY +
Sbjct: 379 LFVLPYNYPVFLPLLDDLFKIHKNKPSLKWRQLFENYLKTMPPYY--------------I 424
Query: 435 GNYQEYLKRMAAP 447
G ++ L+ M AP
Sbjct: 425 GPLKKALRMMGAP 437
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 49/63 (77%), Gaps = 3/63 (4%)
Query: 427 HTMPISQMGNYQEYLKRMAAPLREVE-STPVRQHMFGNPFKIDKR-MMVDEADIDLVGGS 484
H++PI QMGNYQE+LK + +PLRE++ P R H FGNPFK+DK+ MM+DEAD + V G+
Sbjct: 580 HSIPIVQMGNYQEFLKHIPSPLRELDYDQPRRLHTFGNPFKLDKKGMMIDEAD-EFVSGN 638
Query: 485 PHK 487
+K
Sbjct: 639 QNK 641
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 5/54 (9%)
Query: 519 PKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDR 572
P ++ PL++AL MG P +L+PDSME LSYSV+SYLK++ QAK E DR
Sbjct: 421 PYYIGPLKKALRMMGAP-----NLMPDSMEYGLSYSVVSYLKKLSQQAKVESDR 469
>sp|Q6PCM2|INT6_MOUSE Integrator complex subunit 6 OS=Mus musculus GN=Ints6 PE=2 SV=1
Length = 883
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/408 (56%), Positives = 285/408 (69%), Gaps = 54/408 (13%)
Query: 21 ASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFL 80
A AGWKEN TFM ELKNLQ G+T LG +L+ FD+LN+NR+ +GID YGQGR+PFFL
Sbjct: 61 AIKAGWKENHATFMNELKNLQAEGLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFL 120
Query: 81 EPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ------ 134
EPA+I+ ITDG KL+ +GVQ++ +LP++SP+PGSE+T+EPFRWDQRLF+LVL+
Sbjct: 121 EPAIIITITDGSKLTTTSGVQDELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGTMS 180
Query: 135 ---RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGP 191
+ V D+S I MCEVTGGRSY V S RML QC++SLVQKVQSGVVINFEK GP
Sbjct: 181 VESEQLTGVPLDDSAITPMCEVTGGRSYSVCSPRMLNQCLESLVQKVQSGVVINFEKAGP 240
Query: 192 DPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGF 251
DPPP E + +IS FGS WH+C KLIYV
Sbjct: 241 DPPPAEEG-------QPDISRPFGSQ---------------PWHSCHKLIYV-------- 270
Query: 252 PVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQD 311
P P++ G P+G WP+PESFWPD + +LPPR++HP VKF+CT +
Sbjct: 271 ----RPNPKT-----------GVPIGHWPVPESFWPDQNSPTLPPRTSHPVVKFSCTDCE 315
Query: 312 PLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLS 371
P+VI+ LPFDKYELEPSPLTQ+IL RK P CWQV+V+NS K +++GHPFGYLKAST L+
Sbjct: 316 PMVIDKLPFDKYELEPSPLTQFILERKSPQTCWQVYVSNSAKYNELGHPFGYLKASTALT 375
Query: 372 TVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYY 419
VNLFVMPYNYP LLPL+DD FKVH+ K T +WR +F+ Y+ TMP YY
Sbjct: 376 CVNLFVMPYNYPVLLPLLDDLFKVHKAKPTLKWRQSFESYLKTMPPYY 423
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 28/162 (17%)
Query: 423 SSSIHTMPISQMGNYQEYLKRMAAPLREVE-STPVRQHMFGNPFKIDKR-MMVDEADIDL 480
+H++PI+QMGNYQEYLK++ +PLRE++ P R H FGNPFK+DK+ MM+DEAD +
Sbjct: 575 EDQVHSVPIAQMGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEADEFV 634
Query: 481 VG----------------------GSPHKGGGKRSPHGDSGGGGGGVSPRLASKRKPG-- 516
G SP G ++SP +S GG G P ++ +PG
Sbjct: 635 AGPQNKHKRPGEPSMQGIPKRRRCASPLLRGRRQSPAVNSHIGGKG-PPAPMTQAQPGLI 693
Query: 517 -PIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLS 557
P+P H + +++ + ++ L D N++ L+
Sbjct: 694 KPLPLHKEATNDSIVDDVVENHVADQLSSDMTPNAMDTEFLT 735
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 5/54 (9%)
Query: 519 PKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDR 572
P ++ PL++A+ MG P +LI DSME LSYSV+SYLK++ QAK E DR
Sbjct: 421 PYYLGPLKKAVRMMGAP-----NLIADSMEYGLSYSVISYLKKLSQQAKIESDR 469
>sp|Q9UL03|INT6_HUMAN Integrator complex subunit 6 OS=Homo sapiens GN=INTS6 PE=1 SV=1
Length = 887
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/408 (56%), Positives = 285/408 (69%), Gaps = 54/408 (13%)
Query: 21 ASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFL 80
A AGWKEN TFM ELKNLQ G+T LG +L+ FD+LN+NR+ +GID YGQGR+PFFL
Sbjct: 61 AIKAGWKENHATFMNELKNLQAEGLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFL 120
Query: 81 EPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ------ 134
EPA+I+ ITDG KL+ +GVQ++ +LP++SP+PGSE+T+EPFRWDQRLF+LVL+
Sbjct: 121 EPAIIITITDGSKLTTTSGVQDELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGTMS 180
Query: 135 ---RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGP 191
+ V D+S I MCEVTGGRSY V S RML QC++SLVQKVQSGVVINFEK GP
Sbjct: 181 VESEQLTGVPLDDSAITPMCEVTGGRSYSVCSPRMLNQCLESLVQKVQSGVVINFEKAGP 240
Query: 192 DPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGF 251
DP P+ + + +IS FGS WH+C KLIYV
Sbjct: 241 DPSPVEDG-------QPDISRPFGSQ---------------PWHSCHKLIYV-------- 270
Query: 252 PVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQD 311
P P++ G P+G WP+PESFWPD + +LPPR++HP VKF+CT +
Sbjct: 271 ----RPNPKT-----------GVPIGHWPVPESFWPDQNSPTLPPRTSHPVVKFSCTDCE 315
Query: 312 PLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLS 371
P+VI+ LPFDKYELEPSPLTQ+IL RK P CWQV+V+NS K S++GHPFGYLKAST L+
Sbjct: 316 PMVIDKLPFDKYELEPSPLTQFILERKSPQTCWQVYVSNSAKYSELGHPFGYLKASTALN 375
Query: 372 TVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYY 419
VNLFVMPYNYP LLPL+DD FKVH+ K T +WR +F+ Y+ TMP YY
Sbjct: 376 CVNLFVMPYNYPVLLPLLDDLFKVHKAKPTLKWRQSFESYLKTMPPYY 423
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 5/78 (6%)
Query: 423 SSSIHTMPISQMGNYQEYLKRMAAPLREVE-STPVRQHMFGNPFKIDKR-MMVDEADIDL 480
+H++PI+QMGNYQEYLK++ +PLRE++ P R H FGNPFK+DK+ MM+DEAD +
Sbjct: 576 EDQVHSVPIAQMGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEAD-EF 634
Query: 481 VGG--SPHKGGGKRSPHG 496
V G + HK G+ + G
Sbjct: 635 VAGPQNKHKRPGEPNMQG 652
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 5/54 (9%)
Query: 519 PKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDR 572
P ++ PL++A+ MG P +LI DSME LSYSV+SYLK++ QAK E DR
Sbjct: 421 PYYLGPLKKAVRMMGAP-----NLIADSMEYGLSYSVISYLKKLSQQAKIESDR 469
>sp|Q5JSJ4|DX26B_HUMAN Protein DDX26B OS=Homo sapiens GN=DDX26B PE=1 SV=1
Length = 861
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/405 (56%), Positives = 281/405 (69%), Gaps = 50/405 (12%)
Query: 24 AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
AGWKEN TFM+ELKNLQ +G+T LG AL+ +FD+LN+NR+ SGID YGQGR+PFFLEP+
Sbjct: 64 AGWKENHATFMSELKNLQASGLTTLGQALRSSFDLLNLNRLISGIDNYGQGRNPFFLEPS 123
Query: 84 VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ--------- 134
+++ ITDG KL++ GVQE+ +LP++SP+PGSE+T+EPFRWDQRLF+LVL+
Sbjct: 124 ILITITDGNKLTSTAGVQEELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGVASTEP 183
Query: 135 RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP 194
+G V D S I MCEVTGGRSYCV + RML QC++SLVQKVQSGVVINFEK GPDP
Sbjct: 184 EQLGSVPTDESAITQMCEVTGGRSYCVRTQRMLNQCLESLVQKVQSGVVINFEKTGPDPL 243
Query: 195 PINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVG 254
PI E + S SN SF + WH+C KLIYV
Sbjct: 244 PIGEDGLMDSSRPSN---SFAAQ---------------PWHSCHKLIYV----------- 274
Query: 255 FWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLV 314
+S G PVG WPIPESFWPD SLPPR++HP V+F+C +P+V
Sbjct: 275 ------------RPNSKTGVPVGHWPIPESFWPDQNLPSLPPRTSHPVVRFSCVDCEPMV 322
Query: 315 IENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVN 374
I+ LPFDKYELEPSPLTQYIL RK P CWQVFV +S K +++G+PFGYLKAST L+ VN
Sbjct: 323 IDKLPFDKYELEPSPLTQYILERKSPHTCWQVFVTSSGKYNELGYPFGYLKASTTLTCVN 382
Query: 375 LFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYY 419
LFVMPYNYP LLPL+DD FKVH++K +WR F Y+ T+P YY
Sbjct: 383 LFVMPYNYPVLLPLLDDLFKVHKLKPNLKWRQAFDSYLKTLPPYY 427
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 3/65 (4%)
Query: 425 SIHTMPISQMGNYQEYLKRMAAPLREVE-STPVRQHMFGNPFKIDKR-MMVDEADIDLVG 482
S+H++P++QMGNYQEYLK +A+PLRE++ P R H FGNPFK DK+ MM+DEAD + V
Sbjct: 545 SLHSVPVAQMGNYQEYLKTLASPLREIDPDQPKRLHTFGNPFKQDKKGMMIDEAD-EFVA 603
Query: 483 GSPHK 487
G +K
Sbjct: 604 GPQNK 608
>sp|Q8BND4|DX26B_MOUSE Protein DDX26B OS=Mus musculus GN=Ddx26b PE=1 SV=1
Length = 861
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/405 (55%), Positives = 278/405 (68%), Gaps = 50/405 (12%)
Query: 24 AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
AGWKEN TFM ELKNLQ +G+T LG AL+ +FD+LN+NR+ SGID YGQGR+PFFLEP+
Sbjct: 64 AGWKENHATFMNELKNLQASGLTTLGQALRSSFDLLNLNRLISGIDNYGQGRNPFFLEPS 123
Query: 84 VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ--------- 134
+++ ITDG KL++ VQE+ +LP++SP+PGSE+T+EPFRWDQRLF+LVL+
Sbjct: 124 ILITITDGNKLTSTASVQEELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGVASTEP 183
Query: 135 RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP 194
+G V D S I MCEVTGGRSYCV + RML QC++SLVQKVQSGVVINFEK GPDP
Sbjct: 184 EQLGSVPSDESAITQMCEVTGGRSYCVRTQRMLNQCLESLVQKVQSGVVINFEKTGPDPL 243
Query: 195 PINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVG 254
P+ E + L SN+ + WH+C KLIYV
Sbjct: 244 PVGEDTLMELCRPSNL------------------FAAQPWHSCHKLIYV----------- 274
Query: 255 FWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLV 314
+S G PVG WPIPESFWP+ SLPPR++HP V+F+C +P+V
Sbjct: 275 ------------RPNSKTGVPVGHWPIPESFWPEQNLPSLPPRTSHPVVRFSCVDCEPMV 322
Query: 315 IENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVN 374
I+ LPFDKYELEPSPLTQYIL RK P CWQVFV +S K +++G+PFGYLKAST L+ VN
Sbjct: 323 IDKLPFDKYELEPSPLTQYILERKSPHTCWQVFVTSSSKYNELGYPFGYLKASTTLTCVN 382
Query: 375 LFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYY 419
LFVMPYNYP LLPL+DD FKVH++K +WR F Y+ T+P YY
Sbjct: 383 LFVMPYNYPVLLPLLDDLFKVHKLKPNLKWRQAFDSYLKTLPPYY 427
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 49/60 (81%), Gaps = 2/60 (3%)
Query: 425 SIHTMPISQMGNYQEYLKRMAAPLREVE-STPVRQHMFGNPFKIDKR-MMVDEADIDLVG 482
S+H++P++QMGNYQEYLK +A+PLRE++ P R H FGNPFK DK+ MM+DEAD +VG
Sbjct: 545 SLHSVPVAQMGNYQEYLKMLASPLRELDPDQPKRLHTFGNPFKQDKKGMMIDEADEFVVG 604
>sp|Q7SYD9|INT6_DANRE Integrator complex subunit 6 OS=Danio rerio GN=ints6 PE=2 SV=1
Length = 892
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/405 (56%), Positives = 280/405 (69%), Gaps = 50/405 (12%)
Query: 24 AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
AGWKEN TFM+ELKNLQ +G+T LG AL+ FD+LN+NR+ SGID YGQGR+PFFLEP+
Sbjct: 64 AGWKENHATFMSELKNLQASGLTTLGHALRAAFDLLNLNRLVSGIDNYGQGRNPFFLEPS 123
Query: 84 VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ--------- 134
VI+ ITDG KL++++GV E+ +LP++SP+PGSE+T+EPFRWDQRLF+LVL+
Sbjct: 124 VIITITDGNKLTHSSGVAEELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGVAVPDS 183
Query: 135 RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP 194
+G V D S I MCEVTGGRSYCV + RML QC++SLVQKV SGVVI+FEK GPDPP
Sbjct: 184 EQLGSVPTDESAITQMCEVTGGRSYCVRTQRMLNQCLESLVQKVLSGVVIHFEKTGPDPP 243
Query: 195 PINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVG 254
I E V + + WH+C KLIYV
Sbjct: 244 VIGEDGL------------------VDPARPLTSFSPQPWHSCHKLIYV----------- 274
Query: 255 FWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLV 314
P P++ G PVG WPI ESFWPD + +LPPRSAHP V+F+C +P+V
Sbjct: 275 -RPNPKT-----------GVPVGHWPISESFWPDQNSPTLPPRSAHPVVRFSCVDCEPMV 322
Query: 315 IENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVN 374
I+ LPFDKYELEPSPLTQYIL RK P +CWQVFV S K+SDV HPFGYLKAST L+ VN
Sbjct: 323 IDKLPFDKYELEPSPLTQYILERKSPHMCWQVFVNCSGKHSDVAHPFGYLKASTTLTCVN 382
Query: 375 LFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYY 419
LFVMPYNYP LLPL+DD FKVH++K +WR +F+ Y+ +MP YY
Sbjct: 383 LFVMPYNYPVLLPLLDDLFKVHKLKPNLKWRQSFEMYLKSMPPYY 427
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 11/107 (10%)
Query: 423 SSSIHTMPISQMGNYQEYLKRMAAPLREVE-STPVRQHMFGNPFKIDKR-MMVDEADIDL 480
S+H++P+ QMGNYQEYLK M +PLRE++ P R H FGNPFK DK+ MM+DEAD +
Sbjct: 580 DDSLHSIPVGQMGNYQEYLKMMPSPLREIDPDQPKRLHTFGNPFKQDKKGMMIDEAD-EF 638
Query: 481 VGGSPHKGGGKRSPHGDSGGGGG-----GVSPRLASKRKPGPIPKHV 522
V G +K KR GD G +SP L + P I HV
Sbjct: 639 VTGPQNK---KRGNTGDLNSGTALKRRRSMSPLLRRPQTPPIITNHV 682
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 5/54 (9%)
Query: 519 PKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDR 572
P ++ PL++AL MG P +LI D+M+ LSYSV+SYLK++ QAK E DR
Sbjct: 425 PYYLLPLKKALRMMGAP-----NLISDNMDCGLSYSVISYLKKLSQQAKIESDR 473
>sp|Q5U4W6|INT6B_XENLA Integrator complex subunit 6-B OS=Xenopus laevis GN=ints6-b PE=2
SV=1
Length = 883
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/405 (56%), Positives = 280/405 (69%), Gaps = 54/405 (13%)
Query: 24 AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
AGWKEN TFM ELKNLQ G+T LG +L+ FD+LN+NR+ +GID YGQGR+PFFLEP+
Sbjct: 64 AGWKENHATFMNELKNLQAVGLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFLEPS 123
Query: 84 VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVL---------Q 134
+IV ITDG KL+ A GVQ++ +LP++SP+PGSE+T+EPFRWDQRLF+LVL Q
Sbjct: 124 IIVAITDGSKLTTANGVQDELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGATAVEQ 183
Query: 135 RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP 194
V D SPI AMC+VTGGRSY VTS R+L QC++SLVQK+QSGVVINFEK GPDPP
Sbjct: 184 EQPTAVQFDESPITAMCDVTGGRSYSVTSQRILNQCLESLVQKIQSGVVINFEKSGPDPP 243
Query: 195 PINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVG 254
+ + G + PV + G S WH+C KLIYV
Sbjct: 244 ILED----------------GLTDPVRSVG------SQPWHSCHKLIYV----------- 270
Query: 255 FWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLV 314
P P++ G P+G WPIPESFWPD + +LPPR++HP VKF+CT +PLV
Sbjct: 271 -RPNPKT-----------GVPIGHWPIPESFWPDQNSPTLPPRTSHPVVKFSCTDSEPLV 318
Query: 315 IENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVN 374
I+ LPFDKYELEPSPLTQ+IL RK P CW VFV NS K ++GHPFGYLKAST L+ VN
Sbjct: 319 IDKLPFDKYELEPSPLTQFILERKSPHTCWPVFVPNSAKYCELGHPFGYLKASTALNCVN 378
Query: 375 LFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYY 419
LFV+PYNYP LLPL+DD FK+H+ K +WR F+ Y+ TMP YY
Sbjct: 379 LFVLPYNYPVLLPLLDDLFKMHKNKPPLKWRQPFENYLKTMPPYY 423
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 3/63 (4%)
Query: 427 HTMPISQMGNYQEYLKRMAAPLREVE-STPVRQHMFGNPFKIDKR-MMVDEADIDLVGGS 484
H++PI QMGNYQEYLK + +PLRE++ P R H FGNPFK+DK+ MM+DEAD + V G+
Sbjct: 580 HSIPIVQMGNYQEYLKHIPSPLRELDYDQPRRLHTFGNPFKLDKKGMMIDEAD-EFVSGN 638
Query: 485 PHK 487
+K
Sbjct: 639 QNK 641
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 5/54 (9%)
Query: 519 PKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDR 572
P ++ PL++AL MG P +L+PDSME LSYSV+SYLK++ QAK E DR
Sbjct: 421 PYYIGPLKKALRMMGTP-----NLMPDSMEYGLSYSVVSYLKKLSQQAKVESDR 469
>sp|Q54Z23|INT6_DICDI Integrator complex subunit 6 homolog OS=Dictyostelium discoideum
GN=ints6 PE=3 SV=2
Length = 1107
Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/418 (37%), Positives = 231/418 (55%), Gaps = 71/418 (16%)
Query: 13 LFFITHA----SASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGI 68
F IT +A GWK+N +F+ E+KNLQ M+ LG +L+ +FD LN R+QS I
Sbjct: 49 FFLITSEENPITAVKIGWKDNFNSFIQEVKNLQTKDMSNLGFSLQKSFDFLNQFRVQSSI 108
Query: 69 DTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRL 128
D YGQGR+P+F+EPA+I+++TDG L+N++ + E+F LP S+ T EPFRWDQRL
Sbjct: 109 DNYGQGRNPWFIEPAIIILLTDGSSLTNSSSIIENFTLPKTQFHLNSDPTSEPFRWDQRL 168
Query: 129 FSLVLQRDMGVVACDNS-------PIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSG 181
FS+VL+ G ++ + S I MC+VTGGR T+ + ++Q ++ L+QK+Q G
Sbjct: 169 FSIVLK--FGGISSNKSLPLPMEPAIAPMCDVTGGRCQVATNMKTMIQQVEGLMQKLQGG 226
Query: 182 VVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLI 241
VV++FE P +N+ + + + + K++
Sbjct: 227 VVVSFE------PLVNQQQAQAQAQQL---------------------LPPPPLSLHKML 259
Query: 242 YVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHP 301
YV + VGFWPIPE ++ PDIT+ SLP R AHP
Sbjct: 260 YVRQQ------VGFWPIPEGYY-----------------------PDITSLSLPMRLAHP 290
Query: 302 NVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPF 361
++++ D + EN PFDKYELEP PLTQY+L K C VF+ NS + S G PF
Sbjct: 291 VIRYSIIEADTHIPENFPFDKYELEPCPLTQYLLTNK--IQCTHVFMMNSLQVSGQGEPF 348
Query: 362 GYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYY 419
G L+ ++ ++VNLFV PYN+P L L++D +M + +W+ F+ Y+ ++P YY
Sbjct: 349 GCLRLNSAGNSVNLFVFPYNFPRLWILLEDLTTTFKMMPSQKWKQEFEGYLLSIPPYY 406
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 425 SIHTMPISQMGNYQEYLKRMAAPLREVE-----STPVRQHMFGNPFKIDKR----MMVDE 475
S H +PISQMGNY E + + LR+++ +TP +FGNP++ +K M +DE
Sbjct: 608 SKHHLPISQMGNYHETIGKRET-LRDIDDDKKPNTP----LFGNPYRKEKSNQRYMSIDE 662
Query: 476 ADIDLVGGSPHKGGGKRSPHGDSGGGGGG 504
AD S +G K +P+ G G
Sbjct: 663 ADEGGNLTSDGEGKNKLTPNKRRRLSGRG 691
>sp|A1VF55|PROB_DESVV Glutamate 5-kinase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=proB PE=3 SV=1
Length = 380
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 31/173 (17%)
Query: 119 REPFRWDQRLFSLVLQRDMGVV-ACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDS---L 174
RE F + F +L D GV+ + + A+ E+ G + C+ S +LL ++ +
Sbjct: 120 RERFLNARNTFQALL--DWGVIPVVNENDTVAVQELKFGDNDCLAS--LLLNVVEGDLYV 175
Query: 175 VQKVQSGVVINFEKIGPDP---PPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINS 231
SGV + + P+ P I + L L G T VGTGG +
Sbjct: 176 NLTSASGVYADNPQTNPEAGILPCIEDVHTLDLDV------MCGGKTSVGTGGMYS---- 225
Query: 232 TAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPES 284
KL+ R+AQ G P P E P I + G PVG W PE+
Sbjct: 226 -------KLLAASRAAQLGVPTLILPGRE---PRILERAFSGEPVGTWVRPEA 268
>sp|Q72DJ9|PROB_DESVH Glutamate 5-kinase OS=Desulfovibrio vulgaris (strain Hildenborough
/ ATCC 29579 / NCIMB 8303) GN=proB PE=3 SV=1
Length = 380
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 31/173 (17%)
Query: 119 REPFRWDQRLFSLVLQRDMGVV-ACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDS---L 174
RE F + F +L D GV+ + + A+ E+ G + C+ S +LL ++ +
Sbjct: 120 RERFLNARNTFQALL--DWGVIPVVNENDTVAVQELKFGDNDCLAS--LLLNVVEGDLYV 175
Query: 175 VQKVQSGVVINFEKIGPDP---PPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINS 231
SGV + + P+ P I + L L G T VGTGG +
Sbjct: 176 NLTSASGVYADNPQTNPEAGILPCIEDVHTLDLDV------MCGGKTSVGTGGMYS---- 225
Query: 232 TAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPES 284
KL+ R+AQ G P P E P I + G PVG W PE+
Sbjct: 226 -------KLLAASRAAQLGVPTLILPGRE---PRILERAFSGEPVGTWVRPEA 268
>sp|Q9C707|BH083_ARATH Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2
SV=1
Length = 298
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 484 SPHKGGGKRSPHGDSGGGGGGVSPRLASKRKPGPI--PKHVQPL--RRALIRMGMPAAIS 539
SP G KRS G+S +S + K KP P PK Q L + R+ I
Sbjct: 165 SPKSAGNKRSHTGESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKIL 224
Query: 540 QSLIPDSMENSLS---YSVLSYLKRMKIQAK----DEF 570
Q L+P+ + L +SY+K +++Q K DEF
Sbjct: 225 QELVPNGTKVDLVTMLEKAISYVKFLQVQVKVLATDEF 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,985,558
Number of Sequences: 539616
Number of extensions: 10591083
Number of successful extensions: 35384
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 35116
Number of HSP's gapped (non-prelim): 211
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)