Query psy11584
Match_columns 573
No_of_seqs 97 out of 99
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 22:15:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3768|consensus 100.0 1E-167 3E-172 1328.8 35.7 464 12-529 52-675 (888)
2 KOG3768|consensus 98.4 1.7E-07 3.7E-12 103.5 2.7 49 519-572 424-472 (888)
3 PF13519 VWA_2: von Willebrand 98.1 2E-06 4.4E-11 76.4 3.5 127 10-174 41-172 (172)
4 cd01453 vWA_transcription_fact 98.0 1.7E-05 3.7E-10 75.8 8.1 128 10-173 49-177 (183)
5 cd01463 vWA_VGCC_like VWA Volt 97.9 5.8E-05 1.3E-09 71.4 8.4 125 10-164 51-189 (190)
6 PRK13685 hypothetical protein; 97.8 0.00012 2.6E-09 75.8 10.4 150 10-177 131-289 (326)
7 cd01461 vWA_interalpha_trypsin 97.8 8E-05 1.7E-09 67.4 7.3 126 10-171 40-169 (171)
8 TIGR03436 acidobact_VWFA VWFA- 97.7 9.2E-05 2E-09 74.6 7.3 149 10-188 91-264 (296)
9 cd01451 vWA_Magnesium_chelatas 97.7 0.00012 2.7E-09 68.6 7.2 129 10-166 40-169 (178)
10 PF13768 VWA_3: von Willebrand 97.6 4.7E-05 1E-09 69.0 3.8 113 10-159 37-154 (155)
11 cd01465 vWA_subgroup VWA subgr 97.5 0.00041 8.9E-09 62.9 8.0 129 10-169 38-168 (170)
12 TIGR03788 marine_srt_targ mari 97.4 0.00076 1.6E-08 75.2 10.2 140 11-186 310-453 (596)
13 cd01455 vWA_F11C1-5a_type Von 97.3 0.0011 2.3E-08 65.4 9.3 128 10-177 58-188 (191)
14 cd01456 vWA_ywmD_type VWA ywmD 97.3 0.00033 7.3E-09 67.0 5.2 103 28-164 98-203 (206)
15 TIGR00868 hCaCC calcium-activa 97.2 0.00093 2E-08 78.1 8.4 125 10-174 344-473 (863)
16 cd01467 vWA_BatA_type VWA BatA 97.1 0.00097 2.1E-08 61.5 6.1 123 11-166 46-179 (180)
17 cd01470 vWA_complement_factors 97.0 0.0013 2.8E-08 62.5 6.1 140 10-171 41-197 (198)
18 cd01466 vWA_C3HC4_type VWA C3H 97.0 0.0037 8.1E-08 57.5 8.9 114 10-162 38-155 (155)
19 TIGR02442 Cob-chelat-sub cobal 96.9 0.0024 5.3E-08 72.2 8.2 123 10-161 505-632 (633)
20 cd01474 vWA_ATR ATR (Anthrax T 96.8 0.0048 1E-07 58.2 8.3 135 10-178 42-181 (185)
21 TIGR02031 BchD-ChlD magnesium 96.4 0.015 3.3E-07 65.5 9.8 132 10-164 446-583 (589)
22 cd01462 VWA_YIEM_type VWA YIEM 95.9 0.016 3.6E-07 52.4 5.7 67 10-92 39-105 (152)
23 PRK13406 bchD magnesium chelat 95.8 0.017 3.6E-07 65.4 6.7 69 10-92 440-508 (584)
24 cd01472 vWA_collagen von Wille 95.7 0.02 4.4E-07 52.5 5.7 114 10-158 41-157 (164)
25 cd01476 VWA_integrin_invertebr 95.2 0.043 9.4E-07 50.0 5.8 73 8-92 38-114 (163)
26 cd01480 vWA_collagen_alpha_1-V 94.8 0.06 1.3E-06 51.1 6.0 123 10-168 49-176 (186)
27 cd01450 vWFA_subfamily_ECM Von 94.1 0.099 2.1E-06 46.3 5.4 70 10-92 41-114 (161)
28 cd01454 vWA_norD_type norD typ 93.8 0.1 2.2E-06 48.6 5.2 67 10-92 40-114 (174)
29 cd01464 vWA_subfamily VWA subf 93.6 0.09 2E-06 49.1 4.4 72 10-92 47-118 (176)
30 PTZ00441 sporozoite surface pr 93.0 0.35 7.6E-06 55.0 8.5 139 11-182 85-234 (576)
31 cd01475 vWA_Matrilin VWA_Matri 92.6 0.48 1E-05 46.4 7.9 134 10-177 43-182 (224)
32 PF00092 VWA: von Willebrand f 92.3 0.24 5.1E-06 44.7 5.1 133 10-174 40-178 (178)
33 COG1240 ChlD Mg-chelatase subu 92.1 0.31 6.7E-06 50.6 6.2 127 11-167 119-250 (261)
34 cd01471 vWA_micronemal_protein 92.1 0.27 5.8E-06 46.1 5.2 72 9-92 41-119 (186)
35 cd01482 vWA_collagen_alphaI-XI 91.2 0.45 9.8E-06 44.0 5.7 71 10-92 41-114 (164)
36 COG4245 TerY Uncharacterized p 90.4 0.22 4.8E-06 49.8 3.0 82 10-127 47-133 (207)
37 smart00327 VWA von Willebrand 89.5 0.83 1.8E-05 40.8 5.7 119 10-160 42-164 (177)
38 cd00198 vWFA Von Willebrand fa 87.1 1.5 3.2E-05 37.7 5.6 70 8-92 39-112 (161)
39 cd01469 vWA_integrins_alpha_su 84.8 2.3 5E-05 40.2 6.1 129 10-168 41-175 (177)
40 cd01477 vWA_F09G8-8_type VWA F 84.8 2.2 4.8E-05 41.7 6.2 70 11-92 67-142 (193)
41 cd01473 vWA_CTRP CTRP for CS 83.3 2.4 5.2E-05 41.1 5.6 70 10-92 42-119 (192)
42 PF04056 Ssl1: Ssl1-like; Int 77.5 5 0.00011 40.0 5.8 122 13-171 44-169 (193)
43 cd01457 vWA_ORF176_type VWA OR 75.6 6.1 0.00013 37.9 5.7 53 30-92 66-118 (199)
44 KOG2353|consensus 74.5 4.1 8.9E-05 49.9 5.0 105 28-162 289-397 (1104)
45 cd01452 VWA_26S_proteasome_sub 65.0 16 0.00036 36.1 6.2 119 11-161 50-170 (187)
46 cd01481 vWA_collagen_alpha3-VI 62.7 18 0.0004 34.2 5.8 74 9-92 40-117 (165)
47 cd01468 trunk_domain trunk dom 57.9 44 0.00095 33.4 7.8 54 31-101 96-154 (239)
48 cd01479 Sec24-like Sec24-like: 55.2 56 0.0012 33.1 8.2 52 30-100 96-150 (244)
49 cd01460 vWA_midasin VWA_Midasi 47.6 40 0.00087 35.2 5.9 77 10-97 101-180 (266)
50 cd02004 TPP_BZL_OCoD_HPCL Thia 45.8 1.1E+02 0.0025 28.6 8.2 40 145-185 129-168 (172)
51 PF10138 vWA-TerF-like: vWA fo 45.5 46 0.00099 33.7 5.7 67 13-93 46-116 (200)
52 PF14140 YpzI: YpzI-like prote 42.9 11 0.00023 29.5 0.6 15 559-573 7-21 (42)
53 PF03850 Tfb4: Transcription f 40.4 61 0.0013 34.0 5.9 110 31-173 93-217 (276)
54 KOG1185|consensus 34.4 61 0.0013 37.2 5.0 41 146-186 517-557 (571)
55 PRK10997 yieM hypothetical pro 32.9 63 0.0014 36.7 4.9 105 12-153 364-469 (487)
56 PF05762 VWA_CoxE: VWA domain 32.5 63 0.0014 32.1 4.4 43 34-92 113-160 (222)
57 TIGR02720 pyruv_oxi_spxB pyruv 30.9 2.5E+02 0.0054 31.8 9.2 140 31-188 362-531 (575)
58 PRK07979 acetolactate synthase 28.4 2.2E+02 0.0047 32.2 8.2 43 146-188 503-547 (574)
59 PF14216 DUF4326: Domain of un 27.7 23 0.0005 31.2 0.4 14 456-469 19-32 (86)
60 PF09967 DUF2201: VWA-like dom 26.9 45 0.00098 30.6 2.1 28 50-93 67-94 (126)
61 PF07002 Copine: Copine; Inte 26.7 1E+02 0.0022 29.4 4.6 55 25-92 65-119 (146)
62 cd01458 vWA_ku Ku70/Ku80 N-ter 26.5 1.1E+02 0.0023 30.0 4.8 51 30-94 78-140 (218)
63 cd01459 vWA_copine_like VWA Co 25.7 99 0.0021 32.1 4.6 53 26-92 115-167 (254)
64 cd02014 TPP_POX Thiamine pyrop 24.7 2.2E+02 0.0049 27.0 6.5 41 146-187 131-171 (178)
65 TIGR00627 tfb4 transcription f 22.4 77 0.0017 33.5 3.1 29 143-171 189-217 (279)
66 cd02005 TPP_PDC_IPDC Thiamine 22.4 2.4E+02 0.0052 27.1 6.2 43 145-187 126-172 (183)
No 1
>KOG3768|consensus
Probab=100.00 E-value=1.5e-167 Score=1328.77 Aligned_cols=464 Identities=48% Similarity=0.818 Sum_probs=427.6
Q ss_pred cccccccccccccccccchHHHHHHhhccccCCCchhHHHHHH-HHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEec
Q psy11584 12 SLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKH-TFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITD 90 (573)
Q Consensus 12 llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~-AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTD 90 (573)
|+||||+|.||||||++++++||+|||||+|.+.+..++.+.. ||||||+||||+|||+|||||+|||+||++||+|||
T Consensus 52 l~TfeepP~~vk~~~~~~~a~~~~eik~l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTD 131 (888)
T KOG3768|consen 52 LTTFEEPPKNVKVACEKLGAVVIEEIKKLHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITD 131 (888)
T ss_pred EEecccCchhhhhHHhhcccHHHHHHHhhcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEec
Confidence 6999999999999999999999999999999887777766666 999999999999999999999999999999999999
Q ss_pred CCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEe---------ecCCcccCCCchHHHHHhHhCCceEEE
Q psy11584 91 GGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ---------RDMGVVACDNSPIDAMCEVTGGRSYCV 161 (573)
Q Consensus 91 G~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~---------~~~g~vp~d~spI~amCEvTGGrsy~v 161 (573)
|++++..+||++||+||++++++|+||||||||||||||+|||+ +..+.||.|+|+|+.||||||||||.|
T Consensus 132 G~r~s~~~GV~~e~~Lpl~~p~pGse~TkepFRWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV 211 (888)
T KOG3768|consen 132 GGRYSGVAGVPIEFRLPLDPPFPGSEMTKEPFRWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSV 211 (888)
T ss_pred CCccccccCCceeEEeccCCCCCccccccccchhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeee
Confidence 99999999999999999999999999999999999999999996 235678999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhcccceEEeeeecCCCCCCCccccccccccccccCCCCCCCCCCCCCCCccccCCccc-ccceeE
Q psy11584 162 TSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAW-HNCRKL 240 (573)
Q Consensus 162 ~S~k~L~qciesLvqkvq~gVVinFe~~gp~p~~~~~~~~~~~~e~~~~~~~f~~~~p~~~~~~~~~~~~~~w-~~~~~l 240 (573)
.|+|+|+||||+||||+|+||||+|||++|+|+|+..+. . +.....++..+| |.|++|
T Consensus 212 ~Spr~lnqciesLvqkvQ~gVvv~FE~~~p~papi~s~~-------~--------------~~Is~~fg~~p~~~pv~ki 270 (888)
T KOG3768|consen 212 VSPRQLNQCIESLVQKVQYGVVVRFECLPPIPAPITSDE-------V--------------NLISMKFGKVPDKRPVTKI 270 (888)
T ss_pred eCHHHHHHHHHHHHHhhccCeEEEeeecCCCCCCcccCc-------c--------------ccccccccCCCCCCcccee
Confidence 999999999999999999999999999999999876421 0 122234667788 999999
Q ss_pred EEecCCCCCCCCcccccCCCCCCcccccccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCcEEEeecCCCcccccCCCC
Q psy11584 241 IYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPF 320 (573)
Q Consensus 241 iyv~~~~~~g~p~G~WPIPE~~~p~~~~~~~~~~~~~~WpIPEsFWPD~~~~~LPpR~AHP~I~fs~~~~eP~vi~~fPf 320 (573)
|||..+..+++++||||||| +||||+++++||||++||+|+|+|..+||+++++|||
T Consensus 271 Iyv~~~~~~~~pighWPiPE-----------------------sfwPd~~~~tLPpRtsHPvik~~~~a~ep~i~~~lPv 327 (888)
T KOG3768|consen 271 IYVLNPQARPFPIGHWPIPE-----------------------SFWPDRTMDTLPPRTSHPVIKCAPIALEPHIRPELPV 327 (888)
T ss_pred EEecCCCCCCCccccCCCCc-----------------------ccCCcccCCCCCCCCCCceeEeecCCCChhhcccCCc
Confidence 99999999999999999988 9999999999999999999999999999999999999
Q ss_pred ceeeecCCchhHHHhhcCCCCceEEEEEcCCCCCCCCCCCceeeecCCCCCeeEEEEecCCccchhhhHHHHHHhhcCCC
Q psy11584 321 DKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKV 400 (573)
Q Consensus 321 DKYELEpspLTq~iL~rk~p~~cWqvfV~nS~~~~~~g~PFGyLKast~~~~VnLfVLPYNYP~LlpLLdel~kv~k~~p 400 (573)
|||||||||||++||+++++++||||+|.|+++++++++|||||||+|+++||||||||||||+||||||||+|+|+++|
T Consensus 328 DKyElEp~plt~~Ile~~~~~kcwqV~v~n~~~~~el~~PFGyLka~t~~t~V~L~vmpyNyP~Llpll~dlvk~~~~~p 407 (888)
T KOG3768|consen 328 DKYELEPGPLTDIILEILQGRKCWQVWVYNEGSSNELTAPFGYLKANTLGTGVTLIVMPYNYPMLLPLLEDLVKEPFLNP 407 (888)
T ss_pred chhcccCCcHHHHHHHHhccCcceEEEEecCcccCCCCCccceeeeccCcCceEEEEecccchHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCccccc--------------c----------cc--------------------------------
Q psy11584 401 TPEWRGNFQKYIGTMPSYYAA--------------Y----------SS-------------------------------- 424 (573)
Q Consensus 401 s~~Wr~~F~~Yl~tvP~YY~~--------------y----------~~-------------------------------- 424 (573)
+++||++|++|++|||+||.+ | +|
T Consensus 408 s~~wr~kfesY~~tvPpYY~~~lrkal~~~~vp~l~~~sm~~~ls~~l~s~Lk~~k~~Ak~e~d~~~~~v~k~~~q~~~i 487 (888)
T KOG3768|consen 408 SQVWRSKFESYFHTVPPYYNTQLRKALDKFDVPVLYSSSMSMFLSGQLLSNLKRFKAKAKEELDQMAIAVKKNDSQTLKI 487 (888)
T ss_pred hHHHHHHHHHHhhcCCcccchHHHHHHHhcCCcccchhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 999999999999999999999 0 00
Q ss_pred --------------------------------------------------------------------------------
Q psy11584 425 -------------------------------------------------------------------------------- 424 (573)
Q Consensus 425 -------------------------------------------------------------------------------- 424 (573)
T Consensus 488 ~~rsi~~g~~~s~~~~~~~l~~~~~~eD~~~~l~e~~pie~~~f~Vpl~~~~~t~~~~rnaydiPrr~lie~lt~mr~~l 567 (888)
T KOG3768|consen 488 VNRSIRIGRITSRSTIIGLLNSEVDIEDDSLELYESTPIEAGDFKVPLYPPSITDAQLRNAYDIPRRSLIEDLTSMRNRL 567 (888)
T ss_pred CccceeeeeecccchHHhhhhcccccccchhhhhccCceeccceeeecCCCccChhhhcccccCccccHHHHHHHHHHHh
Confidence
Q ss_pred ------------cccccccccccChHHHHhhcCCCCccCCCCcccccccCCCcccccc-eeeecccccccCCCCCCCCCC
Q psy11584 425 ------------SIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKR-MMVDEADIDLVGGSPHKGGGK 491 (573)
Q Consensus 425 ------------~~h~~Pi~qmGnYqeylk~~~~pLRe~~~~~~R~h~FgNpfk~dk~-mmvdEad~~~~~~~~~~~~~k 491 (573)
++|++|||+|||||||||..+.||||++|+++||||||||||+||+ |||||||++++|++.. .+
T Consensus 568 l~~~~l~~~D~~~ih~lpiA~mGnyqeylk~~~~plrem~p~~~r~h~fgnp~k~dk~~~mvdead~~vagp~~~---~~ 644 (888)
T KOG3768|consen 568 LAPNILLMFDPNKIHLLPIAKMGNYQEYLKLGLCPLREMSPTNVRQHMFGNPYKKDKHMVMVDEADLSVAGPSSP---GS 644 (888)
T ss_pred hhhhhhhccCCCcceeeeHHHhccHHHHHhcCCCccccCChhhhhHhhcCCccccccceeeeecccccccCCCCC---CC
Confidence 7999999999999999999999999999999999999999999998 6999999999988643 34
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhh
Q psy11584 492 RSPHGDSGGGGGGVSPRLASKRKPGPIPKHVQPLRRAL 529 (573)
Q Consensus 492 r~~~~~~~~~~~~~~~~~~~krk~gpLp~yf~plr~a~ 529 (573)
|+ ++.++.+-.-||||+||||+-|...|-+-
T Consensus 645 ~p-------g~p~m~gmpkrkr~~~pl~r~~e~~~~~~ 675 (888)
T KOG3768|consen 645 SP-------GGPGMPGMPKRKRKAGPLPRSFEFRRSST 675 (888)
T ss_pred CC-------CCCCCCCCcccccccCCCccchhcCcccc
Confidence 44 11333333469999999999888766653
No 2
>KOG3768|consensus
Probab=98.36 E-value=1.7e-07 Score=103.53 Aligned_cols=49 Identities=43% Similarity=0.544 Sum_probs=46.9
Q ss_pred CcccccchhhhhcCCCchhhccccccccccCCcchhHHHHHHHHHHHHhhhhcc
Q psy11584 519 PKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDR 572 (573)
Q Consensus 519 p~yf~plr~a~~~~gap~~~~~~li~~~~~~~lsy~v~~ylkklk~qaK~e~d~ 572 (573)
|||-.+|||||..|++| .|++|+||+.|||+|++||||+|++||+|.|+
T Consensus 424 pYY~~~lrkal~~~~vp-----~l~~~sm~~~ls~~l~s~Lk~~k~~Ak~e~d~ 472 (888)
T KOG3768|consen 424 PYYNTQLRKALDKFDVP-----VLYSSSMSMFLSGQLLSNLKRFKAKAKEELDQ 472 (888)
T ss_pred cccchHHHHHHHhcCCc-----ccchhhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999 99999999999999999999999999999986
No 3
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.11 E-value=2e-06 Score=76.40 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=88.7
Q ss_pred hhcccccccccccccccccchHHHHHHhhcccc----CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQC----TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa----~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
++|++|.+.+ .+...+-.+...|.+.|+++.. .|-|.+..||..|.++|.-.+ -....|
T Consensus 41 v~l~~f~~~~-~~~~~~t~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~----------------~~~~~i 103 (172)
T PF13519_consen 41 VGLVSFSDSS-RTLSPLTSDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSD----------------NRRRAI 103 (172)
T ss_dssp EEEEEESTSC-EEEEEEESSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-S----------------SEEEEE
T ss_pred EEEEEecccc-cccccccccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCC----------------CCceEE
Confidence 4688898865 4567777889999999999986 588999999999999996544 566899
Q ss_pred EEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEE-cCH
Q psy11584 86 VVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCV-TSH 164 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v-~S~ 164 (573)
|+||||..- ....+ ..++.-++.-++|.|.+..+.+ ....++.||+.|||+.|.+ .+.
T Consensus 104 v~iTDG~~~---~~~~~--------------~~~~~~~~~i~i~~v~~~~~~~----~~~~l~~la~~tgG~~~~~~~~~ 162 (172)
T PF13519_consen 104 VLITDGEDN---SSDIE--------------AAKALKQQGITIYTVGIGSDSD----ANEFLQRLAEATGGRYFHVDNDP 162 (172)
T ss_dssp EEEES-TTH---CHHHH--------------HHHHHHCTTEEEEEEEES-TT-----EHHHHHHHHHHTEEEEEEE-SSS
T ss_pred EEecCCCCC---cchhH--------------HHHHHHHcCCeEEEEEECCCcc----HHHHHHHHHHhcCCEEEEecCCH
Confidence 999999521 11111 2333345667788887733211 1257999999999999999 678
Q ss_pred HHHHHHHHHH
Q psy11584 165 RMLLQCIDSL 174 (573)
Q Consensus 165 k~L~qciesL 174 (573)
..|.+.+..|
T Consensus 163 ~~l~~~~~~I 172 (172)
T PF13519_consen 163 EDLDDAFQQI 172 (172)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHhcC
Confidence 8887766553
No 4
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.01 E-value=1.7e-05 Score=75.75 Aligned_cols=128 Identities=13% Similarity=0.230 Sum_probs=83.9
Q ss_pred hhcccccccccccccccccchHHHHHHhhcc-ccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEE
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNL-QCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVI 88 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnL-qa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~i 88 (573)
+.|++|...-..+-+-.-.++..|++.|+.+ ...|-|.++.||..|.++|.- .+..+. -.+||++
T Consensus 49 vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~~G~t~l~~aL~~A~~~l~~------~~~~~~--------~~iiil~ 114 (183)
T cd01453 49 LGIISIKNGRAEKLTDLTGNPRKHIQALKTARECSGEPSLQNGLEMALESLKH------MPSHGS--------REVLIIF 114 (183)
T ss_pred EEEEEEcCCccEEEECCCCCHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc------CCccCc--------eEEEEEE
Confidence 4578884443445566677788899999887 677889999999999999961 111111 2378888
Q ss_pred ecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHHHH
Q psy11584 89 TDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLL 168 (573)
Q Consensus 89 TDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~L~ 168 (573)
|||+... +.++. ++ ..++-+ ..-++|+|.+. .+...++.+|++|||++|.+.+..+|.
T Consensus 115 sd~~~~~-~~~~~-~~---------~~~l~~----~~I~v~~IgiG-------~~~~~L~~ia~~tgG~~~~~~~~~~l~ 172 (183)
T cd01453 115 SSLSTCD-PGNIY-ET---------IDKLKK----ENIRVSVIGLS-------AEMHICKEICKATNGTYKVILDETHLK 172 (183)
T ss_pred cCCCcCC-hhhHH-HH---------HHHHHH----cCcEEEEEEec-------hHHHHHHHHHHHhCCeeEeeCCHHHHH
Confidence 9886211 11121 11 001111 12478888872 122469999999999999999998887
Q ss_pred HHHHH
Q psy11584 169 QCIDS 173 (573)
Q Consensus 169 qcies 173 (573)
+.+..
T Consensus 173 ~~~~~ 177 (183)
T cd01453 173 ELLLE 177 (183)
T ss_pred HHHHh
Confidence 65544
No 5
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=97.85 E-value=5.8e-05 Score=71.35 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=84.1
Q ss_pred hhcccccccccccccc--------cccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASYAG--------WKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VKaG--------Wken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++|++|.+.+..+--. ..++...+.++|.+|++.|-|.++.||..|++.|..++ +.+.+++..+ .
T Consensus 51 v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~-~~~~~~~~~~------~ 123 (190)
T cd01463 51 FNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNL-QSNHSGSRSQ------C 123 (190)
T ss_pred EEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHHHhh-hcccccccCC------c
Confidence 3578888876655221 23567889999999999999999999999999998766 2222222211 1
Q ss_pred CcEEEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccc------cceeeEEEEeecCCcccCCCchHHHHHhHhC
Q psy11584 82 PAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRW------DQRLFSLVLQRDMGVVACDNSPIDAMCEVTG 155 (573)
Q Consensus 82 PavII~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRW------DQRLFslVL~~~~g~vp~d~spI~amCEvTG 155 (573)
..+||+||||.. ..+ .++ + +.++| .-|+|++.+-.+ ..|..-++.|...+|
T Consensus 124 ~~~iillTDG~~---~~~--~~~-~-------------~~~~~~~~~~~~v~i~tigiG~~----~~d~~~L~~lA~~~~ 180 (190)
T cd01463 124 NQAIMLITDGVP---ENY--KEI-F-------------DKYNWDKNSEIPVRVFTYLIGRE----VTDRREIQWMACENK 180 (190)
T ss_pred eeEEEEEeCCCC---CcH--hHH-H-------------HHhcccccCCCcEEEEEEecCCc----cccchHHHHHHhhcC
Confidence 357999999972 111 110 0 11222 237888887222 125678999999999
Q ss_pred CceEEEcCH
Q psy11584 156 GRSYCVTSH 164 (573)
Q Consensus 156 Grsy~v~S~ 164 (573)
|+.|.|.+.
T Consensus 181 G~~~~i~~~ 189 (190)
T cd01463 181 GYYSHIQSL 189 (190)
T ss_pred CeEEEcccC
Confidence 999998764
No 6
>PRK13685 hypothetical protein; Provisional
Probab=97.80 E-value=0.00012 Score=75.75 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=95.3
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
+.|++|.+.+.-+ .---.++..+.+.|.+|++.|.|.+|.+|..|++.+... ..-.+.+. + -.+..||++|
T Consensus 131 vglv~Fa~~a~~~-~p~t~d~~~l~~~l~~l~~~~~T~~g~al~~A~~~l~~~--~~~~~~~~-~-----~~~~~IILlT 201 (326)
T PRK13685 131 LGLIAFAGTATVL-VSPTTNREATKNAIDKLQLADRTATGEAIFTALQAIATV--GAVIGGGD-T-----PPPARIVLMS 201 (326)
T ss_pred EEEEEEcCceeec-CCCCCCHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHhh--hccccccc-C-----CCCCEEEEEc
Confidence 3567888775433 344567889999999999999999999999999987431 11111111 1 1357899999
Q ss_pred cCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcc---------cCCCchHHHHHhHhCCceEE
Q psy11584 90 DGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVV---------ACDNSPIDAMCEVTGGRSYC 160 (573)
Q Consensus 90 DG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~v---------p~d~spI~amCEvTGGrsy~ 160 (573)
||.. ..|.. |. .+....+..++.-+-+-++|+|-+..+.|.+ ..|...+..+++.|||+.|.
T Consensus 202 DG~~---~~~~~-----~~-~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~ 272 (326)
T PRK13685 202 DGKE---TVPTN-----PD-NPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYT 272 (326)
T ss_pred CCCC---CCCCC-----CC-CcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEE
Confidence 9973 22210 00 0000000111111224468888885432211 23556799999999999999
Q ss_pred EcCHHHHHHHHHHHHHh
Q psy11584 161 VTSHRMLLQCIDSLVQK 177 (573)
Q Consensus 161 v~S~k~L~qciesLvqk 177 (573)
+++...|.+..+.|-+.
T Consensus 273 ~~~~~~L~~if~~I~~~ 289 (326)
T PRK13685 273 AASLEELRAVYATLQQQ 289 (326)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999998888888664
No 7
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=97.75 E-value=8e-05 Score=67.42 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=85.2
Q ss_pred hhcccccccccccccccc----cchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWK----ENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk----en~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
++|++|.+....+..++. ++.....+.|+++++.|-|.+..||..|++.|.- ..+ .+.+|
T Consensus 40 ~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~----------~~~------~~~~i 103 (171)
T cd01461 40 FNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTNMNDALEAALELLNS----------SPG------SVPQI 103 (171)
T ss_pred EEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHhhcc----------CCC------CccEE
Confidence 467888887665543332 2456678888999999999999999999988743 011 36799
Q ss_pred EEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHH
Q psy11584 86 VVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHR 165 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k 165 (573)
|++|||.. .....+.+.+. +..+. ..++|+|.+... .+...++.|++.|||+.+.|.+..
T Consensus 104 illTDG~~-~~~~~~~~~~~----------~~~~~----~i~i~~i~~g~~-----~~~~~l~~ia~~~gG~~~~~~~~~ 163 (171)
T cd01461 104 ILLTDGEV-TNESQILKNVR----------EALSG----RIRLFTFGIGSD-----VNTYLLERLAREGRGIARRIYETD 163 (171)
T ss_pred EEEeCCCC-CCHHHHHHHHH----------HhcCC----CceEEEEEeCCc-----cCHHHHHHHHHcCCCeEEEecChH
Confidence 99999971 11111111110 00001 568899888321 334679999999999999999998
Q ss_pred HHHHHH
Q psy11584 166 MLLQCI 171 (573)
Q Consensus 166 ~L~qci 171 (573)
.+.+.+
T Consensus 164 ~~~~~~ 169 (171)
T cd01461 164 DIESQL 169 (171)
T ss_pred HHHHHh
Confidence 887654
No 8
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=97.68 E-value=9.2e-05 Score=74.57 Aligned_cols=149 Identities=21% Similarity=0.316 Sum_probs=99.5
Q ss_pred hhcccccccccccccccccchHHHHHHhhcccc---------------CCCchhHHHHHHHH-HHHhhhhcccCCCCCCC
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQC---------------TGMTLLGAALKHTF-DVLNMNRMQSGIDTYGQ 73 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa---------------~glt~lg~AL~~AF-dlLN~nRlqsGID~yG~ 73 (573)
++|++|.+.+.-+ ..|..+...+.+.|.+|++ .|-|.+..||..|. +++. +++.. ..
T Consensus 91 v~lv~f~~~~~~~-~~~t~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~-~~~~~-----~p 163 (296)
T TIGR03436 91 VFVVTFNTRLRLL-QDFTSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLA-NALAG-----IP 163 (296)
T ss_pred EEEEEeCCceeEe-ecCCCCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHH-HhhcC-----CC
Confidence 4678898866544 5788888999999999988 78999999986664 4443 22211 11
Q ss_pred CcCCccccCcEEEEEecCCCccCCCCcccccc-cCCCCCCCCCCCCCCCccccceeeEEEEeec----CCc--cc--CCC
Q psy11584 74 GRSPFFLEPAVIVVITDGGKLSNATGVQEDFN-LPMHSPIPGSEMTREPFRWDQRLFSLVLQRD----MGV--VA--CDN 144 (573)
Q Consensus 74 GR~P~~lEPavII~iTDG~~lt~~~Gv~~el~-Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~----~g~--vp--~d~ 144 (573)
|| -+||+||||.- ..+ ..++. +- ..+.+ =+-++|+|-+... .|. .. .+.
T Consensus 164 ~r-------k~iIllTDG~~---~~~-~~~~~~~~-------~~~~~----~~v~vy~I~~~~~~~~~~~~~~~~~~~~~ 221 (296)
T TIGR03436 164 GR-------KALIVISDGGD---NRS-RDTLERAI-------DAAQR----ADVAIYSIDARGLRAPDLGAGAKAGLGGP 221 (296)
T ss_pred CC-------eEEEEEecCCC---cch-HHHHHHHH-------HHHHH----cCCEEEEeccCccccCCcccccccCCCcH
Confidence 32 47999999952 111 10110 00 00011 1345777776311 110 00 134
Q ss_pred chHHHHHhHhCCceEEEcCHHHHHHHHHHHHHhcccceEEeeee
Q psy11584 145 SPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEK 188 (573)
Q Consensus 145 spI~amCEvTGGrsy~v~S~k~L~qciesLvqkvq~gVVinFe~ 188 (573)
..++.||+.|||+.|.+ +...|.+++..+.+.+.+--+|.|..
T Consensus 222 ~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~~Y~l~y~~ 264 (296)
T TIGR03436 222 EALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRSQYLIGYYP 264 (296)
T ss_pred HHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhheEEEEEcC
Confidence 57999999999999999 88999999999999999999999976
No 9
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.65 E-value=0.00012 Score=68.57 Aligned_cols=129 Identities=14% Similarity=0.166 Sum_probs=76.0
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
++|++|.+....+.+-..++...+.+.|+.+++.|-|.++.+|..|++.|+ ++.... | ...+||+||
T Consensus 40 v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T~l~~aL~~a~~~l~-~~~~~~------~------~~~~ivliT 106 (178)
T cd01451 40 VALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGTPLAAGLLAAYELAA-EQARDP------G------QRPLIVVIT 106 (178)
T ss_pred EEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-HHhcCC------C------CceEEEEEC
Confidence 467889764323333334566778899999999999999999999999982 221110 1 257999999
Q ss_pred cCCCccCCCCcccc-cccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHH
Q psy11584 90 DGGKLSNATGVQED-FNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRM 166 (573)
Q Consensus 90 DG~~lt~~~Gv~~e-l~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~ 166 (573)
||..-.+..-.... .. ...++.++ .=.+|.|-. |.-..+...++.+++.|||+.|.+.+...
T Consensus 107 DG~~~~g~~~~~~~~~~-------~~~~l~~~----gi~v~~I~~----~~~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 107 DGRANVGPDPTADRALA-------AARKLRAR----GISALVIDT----EGRPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred CCCCCCCCCchhHHHHH-------HHHHHHhc----CCcEEEEeC----CCCccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 99632211100000 00 00111111 112233322 11112446799999999999999987553
No 10
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.62 E-value=4.7e-05 Score=69.01 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=78.6
Q ss_pred hhcccccccccccccccc----cchHHHHHHhhcccc-CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWK----ENLTTFMTELKNLQC-TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk----en~~~F~~ELKnLqa-~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
+.+++|.+.+....-+|. ++....++.+++|++ .|-|.+..||+.|++.+ .-.-.+..
T Consensus 37 fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~l~~aL~~a~~~~-----------------~~~~~~~~ 99 (155)
T PF13768_consen 37 FNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTDLLAALRAALALL-----------------QRPGCVRA 99 (155)
T ss_pred EEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCccHHHHHHHHHHhc-----------------ccCCCccE
Confidence 467888886665555555 356778999999999 99999999999999987 22334778
Q ss_pred EEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceE
Q psy11584 85 IVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSY 159 (573)
Q Consensus 85 II~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy 159 (573)
||+||||.--.....+.+.+. + -+.+-|+|++-+.. ..+..-++.|++.|||+..
T Consensus 100 IilltDG~~~~~~~~i~~~v~-------------~--~~~~~~i~~~~~g~-----~~~~~~L~~LA~~~~G~~~ 154 (155)
T PF13768_consen 100 IILLTDGQPVSGEEEILDLVR-------------R--ARGHIRIFTFGIGS-----DADADFLRELARATGGSFH 154 (155)
T ss_pred EEEEEeccCCCCHHHHHHHHH-------------h--cCCCceEEEEEECC-----hhHHHHHHHHHHcCCCEEE
Confidence 999999984111111111111 0 11457899998832 2335779999999999754
No 11
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=97.49 E-value=0.00041 Score=62.91 Aligned_cols=129 Identities=12% Similarity=0.161 Sum_probs=82.3
Q ss_pred hhcccccccccccccccc--cchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEE
Q psy11584 10 LSSLFFITHASASYAGWK--ENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVV 87 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk--en~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~ 87 (573)
+++++|.+....+ +.+. .+...+.+.|.++++.|-|.++.+|+.|++.+..+.-. + .+..||+
T Consensus 38 v~li~f~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~---------~-----~~~~ivl 102 (170)
T cd01465 38 LAIVTYDGAAETV-LPATPVRDKAAILAAIDRLTAGGSTAGGAGIQLGYQEAQKHFVP---------G-----GVNRILL 102 (170)
T ss_pred EEEEEecCCccEE-ecCcccchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhcCC---------C-----CeeEEEE
Confidence 4677887765544 2333 24577888898999999999999999999988633211 1 1256899
Q ss_pred EecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHHH
Q psy11584 88 ITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRML 167 (573)
Q Consensus 88 iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~L 167 (573)
+|||..-+.... .+++. ..+ ..+.++ .-++|+|-+. ...+..-++.|++.+||+.|.+.+...|
T Consensus 103 ~TDG~~~~~~~~-~~~~~----~~~--~~~~~~----~v~i~~i~~g-----~~~~~~~l~~ia~~~~g~~~~~~~~~~~ 166 (170)
T cd01465 103 ATDGDFNVGETD-PDELA----RLV--AQKRES----GITLSTLGFG-----DNYNEDLMEAIADAGNGNTAYIDNLAEA 166 (170)
T ss_pred EeCCCCCCCCCC-HHHHH----HHH--HHhhcC----CeEEEEEEeC-----CCcCHHHHHHHHhcCCceEEEeCCHHHH
Confidence 999973221110 01110 000 001111 2257777762 2344567999999999999999999988
Q ss_pred HH
Q psy11584 168 LQ 169 (573)
Q Consensus 168 ~q 169 (573)
.+
T Consensus 167 ~~ 168 (170)
T cd01465 167 RK 168 (170)
T ss_pred Hh
Confidence 65
No 12
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.39 E-value=0.00076 Score=75.24 Aligned_cols=140 Identities=18% Similarity=0.208 Sum_probs=93.1
Q ss_pred hcccccccccccccc----cccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 11 SSLFFITHASASYAG----WKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 11 ~llT~ee~p~~VKaG----Wken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
.|++|++....+... -.++.....+.|++|++.|-|.+..||+.|++.+. ..+-| .+..||
T Consensus 310 ~ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~---------~~~~~------~~~~ii 374 (596)
T TIGR03788 310 NIIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGTEMAGALSAALRDDG---------PESSG------ALRQVV 374 (596)
T ss_pred EEEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhc---------ccCCC------ceeEEE
Confidence 466777765543211 12355667788999999999999999999997521 11112 256899
Q ss_pred EEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHH
Q psy11584 87 VITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRM 166 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~ 166 (573)
+||||.- ++...+.+.+. +.. =+-|+|++.+ |. ..+..-++.|.+++||..+.+.+...
T Consensus 375 llTDG~~-~~~~~~~~~~~--------------~~~-~~~ri~tvGi----G~-~~n~~lL~~lA~~g~G~~~~i~~~~~ 433 (596)
T TIGR03788 375 FLTDGAV-GNEDALFQLIR--------------TKL-GDSRLFTVGI----GS-APNSYFMRKAAQFGRGSFTFIGSTDE 433 (596)
T ss_pred EEeCCCC-CCHHHHHHHHH--------------Hhc-CCceEEEEEe----CC-CcCHHHHHHHHHcCCCEEEECCCHHH
Confidence 9999961 11111111110 000 0358999988 32 23456689999999999999999999
Q ss_pred HHHHHHHHHHhcccceEEee
Q psy11584 167 LLQCIDSLVQKVQSGVVINF 186 (573)
Q Consensus 167 L~qciesLvqkvq~gVVinF 186 (573)
+.+.+..++.++...++-+.
T Consensus 434 ~~~~~~~~l~~~~~p~l~~v 453 (596)
T TIGR03788 434 VQRKMSQLFAKLEQPALTDI 453 (596)
T ss_pred HHHHHHHHHHhhcCeEEEEE
Confidence 99888888888776666443
No 13
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.33 E-value=0.0011 Score=65.45 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=82.4
Q ss_pred hhcccccccccccccccccchHHHHHHhhcccc--CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEE
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQC--TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVV 87 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa--~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~ 87 (573)
..+|||+-||..=+.- +.+..+=|..+|- .|-.|. .||..|.+.|-. . .--+.-|||+
T Consensus 58 ~~~lt~d~p~t~d~~~----~~~l~~~l~~~q~g~ag~~Ta-dAi~~av~rl~~----~-----------~~a~~kvvIL 117 (191)
T cd01455 58 VPFVKTNHPPKNNKER----LETLKMMHAHSQFCWSGDHTV-EATEFAIKELAA----K-----------EDFDEAIVIV 117 (191)
T ss_pred cCccccccCcccchhH----HHHHHHHHHhcccCccCccHH-HHHHHHHHHHHh----c-----------CcCCCcEEEE
Confidence 4567888888766532 2333333444444 244444 777777655521 1 1124679999
Q ss_pred EecCCCccCCCCcccccccCCCCCCC-CCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHH
Q psy11584 88 ITDGGKLSNATGVQEDFNLPMHSPIP-GSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRM 166 (573)
Q Consensus 88 iTDG~~lt~~~Gv~~el~Lp~~s~~p-GsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~ 166 (573)
+|||+. +.+++. |.- +.+|.+++ .-|+|+|-+ |. .|...+..+.+.|||++|-+.+.+.
T Consensus 118 LTDG~n--~~~~i~---------P~~aAa~lA~~~---gV~iytIgi----G~--~d~~~l~~iA~~tgG~~F~A~d~~~ 177 (191)
T cd01455 118 LSDANL--ERYGIQ---------PKKLADALAREP---NVNAFVIFI----GS--LSDEADQLQRELPAGKAFVCMDTSE 177 (191)
T ss_pred EeCCCc--CCCCCC---------hHHHHHHHHHhC---CCEEEEEEe----cC--CCHHHHHHHHhCCCCcEEEeCCHHH
Confidence 999982 233332 111 23334433 568899988 21 2567899999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy11584 167 LLQCIDSLVQK 177 (573)
Q Consensus 167 L~qciesLvqk 177 (573)
|.+..+.|+..
T Consensus 178 L~~iy~~I~~~ 188 (191)
T cd01455 178 LPHIMQQIFTS 188 (191)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 14
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.29 E-value=0.00033 Score=67.02 Aligned_cols=103 Identities=27% Similarity=0.343 Sum_probs=67.5
Q ss_pred cchHHHHHHhhccc-cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCCCCccccccc
Q psy11584 28 ENLTTFMTELKNLQ-CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNL 106 (573)
Q Consensus 28 en~~~F~~ELKnLq-a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~~Gv~~el~L 106 (573)
.+...+.+.|++|+ +.|-|.++.+|+.|.++|. .|| ...||+||||.--.. ....+.+
T Consensus 98 ~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~------------~~~------~~~iillTDG~~~~~-~~~~~~~-- 156 (206)
T cd01456 98 AQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD------------PGR------VNVVVLITDGEDTCG-PDPCEVA-- 156 (206)
T ss_pred ccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC------------CCC------cceEEEEcCCCccCC-CCHHHHH--
Confidence 36688899999999 9999999999999999884 122 368999999962111 1111111
Q ss_pred CCCCCCCCCCCCCC-CccccceeeEEEEeecCCcccCCCchHHHHHhHhCCce-EEEcCH
Q psy11584 107 PMHSPIPGSEMTRE-PFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRS-YCVTSH 164 (573)
Q Consensus 107 p~~s~~pGsELTkE-PFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrs-y~v~S~ 164 (573)
.++-++ .-+=+-++|+|-+..+ .+...+..++++|||+. |.+.+.
T Consensus 157 --------~~~~~~~~~~~~i~i~~igiG~~-----~~~~~l~~iA~~tgG~~~~~~~~~ 203 (206)
T cd01456 157 --------RELAKRRTPAPPIKVNVIDFGGD-----ADRAELEAIAEATGGTYAYNQSDL 203 (206)
T ss_pred --------HHHHHhcCCCCCceEEEEEecCc-----ccHHHHHHHHHhcCCeEecccccc
Confidence 011110 0001346788877321 34577999999999998 766554
No 15
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=97.19 E-value=0.00093 Score=78.10 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=79.9
Q ss_pred hhccccccccccccccccc-----chHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWKE-----NLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke-----n~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
++|++|++.+.- ....-. ..+.+...| .+.+.|-|.|+.||+.|+++|+-.+-. . ....
T Consensus 344 VGLVtFsssA~v-l~pLt~Its~~dr~aL~~~L-~~~A~GGT~I~~GL~~Alq~L~~~~~~------~--------~~~~ 407 (863)
T TIGR00868 344 VGMVTFDSAAYI-KNELIQITSSAERDALTANL-PTAASGGTSICSGLKAAFQVIKKSYQS------T--------DGSE 407 (863)
T ss_pred EEEEEECCceeE-eeccccCCcHHHHHHHHHhh-ccccCCCCcHHHHHHHHHHHHHhcccc------c--------CCCE
Confidence 457899987543 233321 234455555 367899999999999999998753210 1 1248
Q ss_pred EEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCH
Q psy11584 85 IVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSH 164 (573)
Q Consensus 85 II~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~ 164 (573)
||+||||.- ..+ . +. ..+-=+-+-++|+|.+-. .....++.|++.|||+.|.+++.
T Consensus 408 IILLTDGed---n~~-~-~~-------------l~~lk~~gVtI~TIg~G~------dad~~L~~IA~~TGG~~f~asd~ 463 (863)
T TIGR00868 408 IVLLTDGED---NTI-S-SC-------------FEEVKQSGAIIHTIALGP------SAAKELEELSDMTGGLRFYASDQ 463 (863)
T ss_pred EEEEeCCCC---CCH-H-HH-------------HHHHHHcCCEEEEEEeCC------ChHHHHHHHHHhcCCEEEEeCCH
Confidence 999999972 111 1 11 011112355789998832 22356999999999999999998
Q ss_pred HHHHHHHHHH
Q psy11584 165 RMLLQCIDSL 174 (573)
Q Consensus 165 k~L~qciesL 174 (573)
..+...+|.+
T Consensus 464 ~dl~~L~dAF 473 (863)
T TIGR00868 464 ADNNGLIDAF 473 (863)
T ss_pred HHHHHHHHHH
Confidence 8765444443
No 16
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.11 E-value=0.00097 Score=61.49 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=74.0
Q ss_pred hcccccccccccccccccchHHH---HHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEE
Q psy11584 11 SSLFFITHASASYAGWKENLTTF---MTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVV 87 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWken~~~F---~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~ 87 (573)
++++|.+.... -.-|......+ +++|..+.+.|-|.++.||..|+++|.-.+ + ...+||+
T Consensus 46 ~lv~f~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~g~T~l~~al~~a~~~l~~~~----------~------~~~~iil 108 (180)
T cd01467 46 GLVVFAGAAFT-QAPLTLDRESLKELLEDIKIGLAGQGTAIGDAIGLAIKRLKNSE----------A------KERVIVL 108 (180)
T ss_pred EEEEEcCCeee-ccCCCccHHHHHHHHHHhhhcccCCCCcHHHHHHHHHHHHHhcC----------C------CCCEEEE
Confidence 46777665432 23444444444 445554457788999999999999984321 1 1379999
Q ss_pred EecCCCccCCCCcc--cccccCCCCCCCCCCCCCCCccccceeeEEEEeecC-Ccc-----cCCCchHHHHHhHhCCceE
Q psy11584 88 ITDGGKLSNATGVQ--EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDM-GVV-----ACDNSPIDAMCEVTGGRSY 159 (573)
Q Consensus 88 iTDG~~lt~~~Gv~--~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~-g~v-----p~d~spI~amCEvTGGrsy 159 (573)
+|||.. ..|.. .+. .++.++ =.-++|+|.+.... ... ..|...+..+.+.|||+.|
T Consensus 109 iTDG~~---~~g~~~~~~~----------~~~~~~---~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~ 172 (180)
T cd01467 109 LTDGEN---NAGEIDPATA----------AELAKN---KGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIF 172 (180)
T ss_pred EeCCCC---CCCCCCHHHH----------HHHHHH---CCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEE
Confidence 999962 22211 010 000000 02368899885321 111 2345679999999999999
Q ss_pred EEcCHHH
Q psy11584 160 CVTSHRM 166 (573)
Q Consensus 160 ~v~S~k~ 166 (573)
.+.+..+
T Consensus 173 ~~~~~~~ 179 (180)
T cd01467 173 RALDGFE 179 (180)
T ss_pred EecCccc
Confidence 9987643
No 17
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.01 E-value=0.0013 Score=62.51 Aligned_cols=140 Identities=9% Similarity=0.145 Sum_probs=84.5
Q ss_pred hhcccccccccccc---cccccchHHHHHHhhcccc-----CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASY---AGWKENLTTFMTELKNLQC-----TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VK---aGWken~~~F~~ELKnLqa-----~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++|++|...+.-+- .-...+.+.+.+.|++++. .|-|.++.||+.+++.|...+... +.+| .--
T Consensus 41 v~li~Fs~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~-----~~~~---~~~ 112 (198)
T cd01470 41 YEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRN-----KEAF---NET 112 (198)
T ss_pred EEEEEecCCceEEEecccCCCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcC-----ccch---hhc
Confidence 46788888765542 1123356788899998873 478999999999999886554321 1111 112
Q ss_pred CcEEEEEecCCCccCCCCcc-----cccc--cCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHh
Q psy11584 82 PAVIVVITDGGKLSNATGVQ-----EDFN--LPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVT 154 (573)
Q Consensus 82 PavII~iTDG~~lt~~~Gv~-----~el~--Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvT 154 (573)
+-+||+||||.. ..|.. +.+. ++.... ..-+ -+=+-++|+|.+.. ..|..-+..|++.|
T Consensus 113 ~~~iillTDG~~---~~g~~~~~~~~~~~~~~~~~~~--~~~~----~~~~v~i~~iGvG~-----~~~~~~L~~iA~~~ 178 (198)
T cd01470 113 RHVIILFTDGKS---NMGGSPLPTVDKIKNLVYKNNK--SDNP----REDYLDVYVFGVGD-----DVNKEELNDLASKK 178 (198)
T ss_pred ceEEEEEcCCCc---CCCCChhHHHHHHHHHHhcccc--cccc----hhcceeEEEEecCc-----ccCHHHHHHHhcCC
Confidence 578999999972 22211 0110 000000 0000 01123577776621 23567899999999
Q ss_pred CC--ceEEEcCHHHHHHHH
Q psy11584 155 GG--RSYCVTSHRMLLQCI 171 (573)
Q Consensus 155 GG--rsy~v~S~k~L~qci 171 (573)
|| ..|.+.+...|.+..
T Consensus 179 ~g~~~~f~~~~~~~l~~v~ 197 (198)
T cd01470 179 DNERHFFKLKDYEDLQEVF 197 (198)
T ss_pred CCCceEEEeCCHHHHHHhc
Confidence 99 489999999887653
No 18
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.01 E-value=0.0037 Score=57.54 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=71.6
Q ss_pred hhcccccccccccccccc----cchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWK----ENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk----en~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
++|++|.+....+ ..+. ++...+.+.|..+.+.|-|.++.||..|+++|... .+.| .+.+|
T Consensus 38 ~~li~F~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~--------~~~~------~~~~i 102 (155)
T cd01466 38 LSIVTFSTSAKRL-SPLRRMTAKGKRSAKRVVDGLQAGGGTNVVGGLKKALKVLGDR--------RQKN------PVASI 102 (155)
T ss_pred EEEEEecCCcccc-CCCcccCHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhhc--------ccCC------CceEE
Confidence 4567787654332 2222 13456777888999999999999999999998421 1111 13689
Q ss_pred EEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEc
Q psy11584 86 VVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVT 162 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~ 162 (573)
|+||||. ...| ...+.. ... .-++|+|-+ |. ..|.--++.+.+.|||+.|-|+
T Consensus 103 illTDG~---~~~~-~~~~~~-----------~~~----~v~v~~igi----g~-~~~~~~l~~iA~~t~G~~~~~~ 155 (155)
T cd01466 103 MLLSDGQ---DNHG-AVVLRA-----------DNA----PIPIHTFGL----GA-SHDPALLAFIAEITGGTFSYVK 155 (155)
T ss_pred EEEcCCC---CCcc-hhhhcc-----------cCC----CceEEEEec----CC-CCCHHHHHHHHhccCceEEEeC
Confidence 9999996 2222 111110 111 234666666 21 2344569999999999999874
No 19
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.91 E-value=0.0024 Score=72.15 Aligned_cols=123 Identities=18% Similarity=0.220 Sum_probs=78.7
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
++|++|......+-.-+-.+...+.+.|..|.+.|-|.|+.+|..|.++|...+.... -...+||+||
T Consensus 505 v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~------------~~~~~vvliT 572 (633)
T TIGR02442 505 VALITFRGEEAEVLLPPTSSVELAARRLEELPTGGRTPLAAGLLKAAEVLSNELLRDD------------DGRPLLVVIT 572 (633)
T ss_pred EEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCC------------CCceEEEEEC
Confidence 4678887544444455556667777899999999999999999999999986544321 1448999999
Q ss_pred cCCCccCCCCcccccccCCCCCCCCCCCCCCCccc-----cceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEE
Q psy11584 90 DGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRW-----DQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCV 161 (573)
Q Consensus 90 DG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRW-----DQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v 161 (573)
||..=.+..| . +-..+.-++ ..++..+|+....+. ....-...||++|||+.|.+
T Consensus 573 DG~~n~~~~~-~--------------~~~~~~~~~a~~l~~~~i~~~vIdt~~~~--~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 573 DGRANVADGG-E--------------PPTDDARTIAAKLAARGILFVVIDTESGF--VRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred CCCCCCCCCC-C--------------ChHHHHHHHHHHHHhcCCeEEEEeCCCCC--cchhHHHHHHHhhCCeEEec
Confidence 9962111001 0 000111111 124667777433222 22356889999999999875
No 20
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=96.83 E-value=0.0048 Score=58.16 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=84.4
Q ss_pred hhcccccccccccccccccchHH---HHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWKENLTT---FMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~---F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++|++|.+.+.- ...+...... .+++|+++.+.|.|.++.||..|.+.|...+ ..||.. ..+||
T Consensus 42 vglv~Fs~~~~~-~~~l~~~~~~~~~~l~~l~~~~~~g~T~~~~aL~~a~~~l~~~~--------~~~r~~----~~~vi 108 (185)
T cd01474 42 FSFITFSTRATK-ILPLTDDSSAIIKGLEVLKKVTPSGQTYIHEGLENANEQIFNRN--------GGGRET----VSVII 108 (185)
T ss_pred EEEEEecCCceE-EEeccccHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHhhc--------cCCCCC----CeEEE
Confidence 678999877543 3456554332 3455788888999999999999999885321 123421 26899
Q ss_pred EEecCCCccCCCCcc-cccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceE-EEcCH
Q psy11584 87 VITDGGKLSNATGVQ-EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSY-CVTSH 164 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~-~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy-~v~S~ 164 (573)
+||||..-.....-. ++. .++.. -.-++|+|-+ . ..+...+..|+..++ ..| ...+.
T Consensus 109 llTDG~~~~~~~~~~~~~a----------~~l~~----~gv~i~~vgv-~-----~~~~~~L~~iA~~~~-~~f~~~~~~ 167 (185)
T cd01474 109 ALTDGQLLLNGHKYPEHEA----------KLSRK----LGAIVYCVGV-T-----DFLKSQLINIADSKE-YVFPVTSGF 167 (185)
T ss_pred EEcCCCcCCCCCcchHHHH----------HHHHH----cCCEEEEEee-c-----hhhHHHHHHHhCCCC-eeEecCccH
Confidence 999997311111100 000 01111 1236788877 2 134567889998775 466 45578
Q ss_pred HHHHHHHHHHHHhc
Q psy11584 165 RMLLQCIDSLVQKV 178 (573)
Q Consensus 165 k~L~qciesLvqkv 178 (573)
..|...++.|++++
T Consensus 168 ~~l~~~~~~~~~~~ 181 (185)
T cd01474 168 QALSGIIESVVKKA 181 (185)
T ss_pred HHHHHHHHHHHHhh
Confidence 99998888888775
No 21
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.39 E-value=0.015 Score=65.52 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=81.2
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
++|++|.+....+...+..+...+.+.|..|.+.|-|.|+.+|..|++++...|-. + .-.+||+||
T Consensus 446 v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~--------~------~~~~ivllT 511 (589)
T TIGR02031 446 VSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGGTPLAAGLAAAFQTALQARSS--------G------GTPTIVLIT 511 (589)
T ss_pred EEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHhccc--------C------CceEEEEEC
Confidence 46789987665565667677888999999999999999999999999998754432 1 135899999
Q ss_pred cCCCccCCCCcccccccCCCCCCCCC-CCCCCCccc-----cceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcC
Q psy11584 90 DGGKLSNATGVQEDFNLPMHSPIPGS-EMTREPFRW-----DQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTS 163 (573)
Q Consensus 90 DG~~lt~~~Gv~~el~Lp~~s~~pGs-ELTkEPFRW-----DQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S 163 (573)
||.. +.|+...+. +.-++. ++..+.... +..+..+|+....+ ..+..-...|+++.||+.|.+-+
T Consensus 512 DG~~---nv~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~--~~~~~~~~~lA~~~~g~y~~l~~ 582 (589)
T TIGR02031 512 DGRG---NIPLDGDPE----SIKADREQAAEEALALARKIREAGMPALVIDTAMR--FVSTGFAQKLARKMGAHYIYLPN 582 (589)
T ss_pred CCCC---CCCCCcccc----cccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCC--CccchHHHHHHHhcCCcEEeCCC
Confidence 9962 211110000 000000 011111111 22344555532222 22234588999999999998865
Q ss_pred H
Q psy11584 164 H 164 (573)
Q Consensus 164 ~ 164 (573)
.
T Consensus 583 ~ 583 (589)
T TIGR02031 583 A 583 (589)
T ss_pred C
Confidence 4
No 22
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=95.88 E-value=0.016 Score=52.35 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=51.0
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
+++++|.+....+-...+++...+++.|..+.+.|-|.++.+|..+++++...+ ....+||+||
T Consensus 39 v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~ggT~l~~al~~a~~~l~~~~----------------~~~~~ivliT 102 (152)
T cd01462 39 TYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGGTDINKALRYALELIERRD----------------PRKADIVLIT 102 (152)
T ss_pred EEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhcC----------------CCCceEEEEC
Confidence 457788777322223356677888899998999999999999999999986542 1257999999
Q ss_pred cCC
Q psy11584 90 DGG 92 (573)
Q Consensus 90 DG~ 92 (573)
||.
T Consensus 103 DG~ 105 (152)
T cd01462 103 DGY 105 (152)
T ss_pred CCC
Confidence 996
No 23
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.83 E-value=0.017 Score=65.37 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=51.8
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
++||+|......+-+---.+.....+.|..|.+.|-|.|+.+|..|.++|...|-. |+ ..+||+||
T Consensus 440 v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~--------~~------~~~iVLlT 505 (584)
T PRK13406 440 VALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGGTPLAAGLDAAAALALQVRRK--------GM------TPTVVLLT 505 (584)
T ss_pred EEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhccC--------CC------ceEEEEEe
Confidence 35789965543443333336777889999999999999999999999998765431 22 25899999
Q ss_pred cCC
Q psy11584 90 DGG 92 (573)
Q Consensus 90 DG~ 92 (573)
||.
T Consensus 506 DG~ 508 (584)
T PRK13406 506 DGR 508 (584)
T ss_pred CCC
Confidence 997
No 24
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=95.72 E-value=0.02 Score=52.51 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=73.4
Q ss_pred hhcccccccccccccccc--cchHHHHHHhhcccc-CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWK--ENLTTFMTELKNLQC-TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk--en~~~F~~ELKnLqa-~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++|++|.+...-+ +.-. .+.+.+.+.|++|+. .|-|.++.||..|.+.|.-.+ . |.+ .-.+-+||
T Consensus 41 ~giv~Fs~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~g~T~~~~al~~a~~~l~~~~--~-----~~~----~~~~~~ii 108 (164)
T cd01472 41 VGVVQYSDDPRTE-FYLNTYRSKDDVLEAVKNLRYIGGGTNTGKALKYVRENLFTEA--S-----GSR----EGVPKVLV 108 (164)
T ss_pred EEEEEEcCceeEE-EecCCCCCHHHHHHHHHhCcCCCCCchHHHHHHHHHHHhCCcc--c-----CCC----CCCCEEEE
Confidence 5668888765443 2222 567889999999998 578999999999999886544 0 111 11467899
Q ss_pred EEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCce
Q psy11584 87 VITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRS 158 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrs 158 (573)
+||||. +..++..... ++.+ -.-++|+|.+.. .|...++.++..+||+.
T Consensus 109 liTDG~---~~~~~~~~~~----------~l~~----~gv~i~~ig~g~------~~~~~L~~ia~~~~~~~ 157 (164)
T cd01472 109 VITDGK---SQDDVEEPAV----------ELKQ----AGIEVFAVGVKN------ADEEELKQIASDPKELY 157 (164)
T ss_pred EEcCCC---CCchHHHHHH----------HHHH----CCCEEEEEECCc------CCHHHHHHHHCCCchhe
Confidence 999994 2223221110 1111 123677776622 26788999999999753
No 25
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=95.15 E-value=0.043 Score=49.96 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=50.6
Q ss_pred hhhhccccccccc-ccccccc--cchHHHHHHhhcccc-CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCc
Q psy11584 8 ILLSSLFFITHAS-ASYAGWK--ENLTTFMTELKNLQC-TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83 (573)
Q Consensus 8 ~~~~llT~ee~p~-~VKaGWk--en~~~F~~ELKnLqa-~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPa 83 (573)
.-+++++|.+.+. .+..-+. ++...+++.++.|+. .|.|.++.||+.|.++|.. . .|..|-. +.
T Consensus 38 ~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~gg~T~l~~aL~~a~~~l~~--------~--~~~r~~~--~~ 105 (163)
T cd01476 38 TRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFIGGTTATGAAIEVALQQLDP--------S--EGRREGI--PK 105 (163)
T ss_pred cEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccCCCCccHHHHHHHHHHHhcc--------c--cCCCCCC--Ce
Confidence 4457788877422 2233343 356789999999986 5789999999999999861 1 1222321 47
Q ss_pred EEEEEecCC
Q psy11584 84 VIVVITDGG 92 (573)
Q Consensus 84 vII~iTDG~ 92 (573)
+||++|||.
T Consensus 106 ~villTDG~ 114 (163)
T cd01476 106 VVVVLTDGR 114 (163)
T ss_pred EEEEECCCC
Confidence 899999996
No 26
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=94.81 E-value=0.06 Score=51.06 Aligned_cols=123 Identities=21% Similarity=0.310 Sum_probs=78.9
Q ss_pred hhcccccccccccccccc---cchHHHHHHhhccc-cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWK---ENLTTFMTELKNLQ-CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk---en~~~F~~ELKnLq-a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
+.|++|.+.+. +...+. .+...+.+.|.+|+ ..|-|.++.||..|.+.+.. | +|. --+-+|
T Consensus 49 vglv~fs~~~~-~~~~l~~~~~~~~~l~~~i~~l~~~gg~T~~~~AL~~a~~~l~~----------~-~~~---~~~~~i 113 (186)
T cd01480 49 VGVVQYSDQQE-VEAGFLRDIRNYTSLKEAVDNLEYIGGGTFTDCALKYATEQLLE----------G-SHQ---KENKFL 113 (186)
T ss_pred EEEEEecCCce-eeEecccccCCHHHHHHHHHhCccCCCCccHHHHHHHHHHHHhc----------c-CCC---CCceEE
Confidence 46788887654 345665 46789999999998 47899999999999998853 1 121 247899
Q ss_pred EEEecCCCccCCC-CcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCH
Q psy11584 86 VVITDGGKLSNAT-GVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSH 164 (573)
Q Consensus 86 I~iTDG~~lt~~~-Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~ 164 (573)
|++|||..-.... .+.+.. .++.+. .-++|+|.+ |. .+...+..|....+|+ |.+++-
T Consensus 114 illTDG~~~~~~~~~~~~~~----------~~~~~~----gi~i~~vgi----g~--~~~~~L~~IA~~~~~~-~~~~~~ 172 (186)
T cd01480 114 LVITDGHSDGSPDGGIEKAV----------NEADHL----GIKIFFVAV----GS--QNEEPLSRIACDGKSA-LYRENF 172 (186)
T ss_pred EEEeCCCcCCCcchhHHHHH----------HHHHHC----CCEEEEEec----Cc--cchHHHHHHHcCCcch-hhhcch
Confidence 9999997311111 111000 011111 224677766 32 4556788888888887 777776
Q ss_pred HHHH
Q psy11584 165 RMLL 168 (573)
Q Consensus 165 k~L~ 168 (573)
..|.
T Consensus 173 ~~l~ 176 (186)
T cd01480 173 AELL 176 (186)
T ss_pred hhhc
Confidence 6653
No 27
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=94.12 E-value=0.099 Score=46.27 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=49.4
Q ss_pred hhcccccccccccccccccc--hHHHHHHhhccccC-C-CchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWKEN--LTTFMTELKNLQCT-G-MTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken--~~~F~~ELKnLqa~-g-lt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
++|++|.+.+..+ +.+... ...+.++|..+... | .|.++.||..|++.+...+- + ..-...+|
T Consensus 41 ~~li~f~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~t~~~~al~~a~~~~~~~~~---------~---~~~~~~~i 107 (161)
T cd01450 41 VGLVQYSDDVRVE-FSLNDYKSKDDLLKAVKNLKYLGGGGTNTGKALQYALEQLFSESN---------A---RENVPKVI 107 (161)
T ss_pred EEEEEEcCCceEE-EECCCCCCHHHHHHHHHhcccCCCCCccHHHHHHHHHHHhccccc---------c---cCCCCeEE
Confidence 4678888755433 445444 67788888888764 3 89999999999998863321 1 12235789
Q ss_pred EEEecCC
Q psy11584 86 VVITDGG 92 (573)
Q Consensus 86 I~iTDG~ 92 (573)
|+||||.
T Consensus 108 iliTDG~ 114 (161)
T cd01450 108 IVLTDGR 114 (161)
T ss_pred EEECCCC
Confidence 9999996
No 28
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=93.83 E-value=0.1 Score=48.56 Aligned_cols=67 Identities=27% Similarity=0.263 Sum_probs=46.7
Q ss_pred hhcccccccc--c----ccc-cccccc-hHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHA--S----ASY-AGWKEN-LTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p--~----~VK-aGWken-~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++|++|.+.. . -+. ..+.++ .....+.|..+.+.|-|.++.||..|.+.|...+ -.
T Consensus 40 ~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~----------------~~ 103 (174)
T cd01454 40 HAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPGGNTRDGAAIRHAAERLLARP----------------EK 103 (174)
T ss_pred EEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCC----------------Cc
Confidence 4677887652 1 111 133333 2355778889999999999999999999996311 11
Q ss_pred CcEEEEEecCC
Q psy11584 82 PAVIVVITDGG 92 (573)
Q Consensus 82 PavII~iTDG~ 92 (573)
+.+||+||||.
T Consensus 104 ~~~iiliTDG~ 114 (174)
T cd01454 104 RKILLVISDGE 114 (174)
T ss_pred CcEEEEEeCCC
Confidence 67999999997
No 29
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=93.61 E-value=0.09 Score=49.13 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=44.8
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
+++++|.+...-+ ..+.+... ..++.|++.|-|.++.||..|++.|....-... +.|+.. -+.+||+||
T Consensus 47 v~ii~F~~~a~~~-~~l~~~~~---~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~----~~~~~~---~~~~iillT 115 (176)
T cd01464 47 ISVITFDSAARVI-VPLTPLES---FQPPRLTASGGTSMGAALELALDCIDRRVQRYR----ADQKGD---WRPWVFLLT 115 (176)
T ss_pred EEEEEecCCceEe-cCCccHHh---cCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhc----ccCcCC---cCcEEEEEc
Confidence 5678888854332 23322111 135678899999999999999999965421100 111111 145899999
Q ss_pred cCC
Q psy11584 90 DGG 92 (573)
Q Consensus 90 DG~ 92 (573)
||.
T Consensus 116 DG~ 118 (176)
T cd01464 116 DGE 118 (176)
T ss_pred CCC
Confidence 997
No 30
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=92.99 E-value=0.35 Score=54.99 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=77.6
Q ss_pred hccccccccccc-cc--cccc---chHHHHHHhhc-cccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCc
Q psy11584 11 SSLFFITHASAS-YA--GWKE---NLTTFMTELKN-LQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83 (573)
Q Consensus 11 ~llT~ee~p~~V-Ka--GWke---n~~~F~~ELKn-Lqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPa 83 (573)
++++|.+.+.-+ +. +-.. ..-.++.+|.. +.+.|.|.++.||..|.+.|.. | + +|. --+.
T Consensus 85 giV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~s-r---~------~R~---nvpK 151 (576)
T PTZ00441 85 YMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLND-R---V------NRE---NAIQ 151 (576)
T ss_pred EEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhh-c---c------ccc---CCce
Confidence 446777765433 11 1111 22234555433 5578999999999999887752 1 1 221 1367
Q ss_pred EEEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHH--HHH--hHhCCceE
Q psy11584 84 VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPID--AMC--EVTGGRSY 159 (573)
Q Consensus 84 vII~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~--amC--EvTGGrsy 159 (573)
+||+||||..-.. ..+.+.. ..|... -..+|+|-+ |. ..+..-++ +-| ..++|+.|
T Consensus 152 VVILLTDG~sns~-~dvleaA----------q~LR~~----GVeI~vIGV----G~-g~n~e~LrlIAgC~p~~g~c~~Y 211 (576)
T PTZ00441 152 LVILMTDGIPNSK-YRALEES----------RKLKDR----NVKLAVIGI----GQ-GINHQFNRLLAGCRPREGKCKFY 211 (576)
T ss_pred EEEEEecCCCCCc-ccHHHHH----------HHHHHC----CCEEEEEEe----CC-CcCHHHHHHHhccCCCCCCCceE
Confidence 9999999983111 1011000 011111 123555555 21 12222233 445 44678999
Q ss_pred EEcCHHHHHHHHHHHHHhcccce
Q psy11584 160 CVTSHRMLLQCIDSLVQKVQSGV 182 (573)
Q Consensus 160 ~v~S~k~L~qciesLvqkvq~gV 182 (573)
.+++...|...+..|+.++-.-|
T Consensus 212 ~vadf~eL~~ivk~LikkVC~ev 234 (576)
T PTZ00441 212 SDADWEEAKNLIKPFIAKVCTEV 234 (576)
T ss_pred EeCCHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998876554
No 31
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=92.60 E-value=0.48 Score=46.37 Aligned_cols=134 Identities=14% Similarity=0.199 Sum_probs=79.1
Q ss_pred hhccccccccccccccccc--chHHHHHHhhccccC-CCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc-CcEE
Q psy11584 10 LSSLFFITHASASYAGWKE--NLTTFMTELKNLQCT-GMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE-PAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke--n~~~F~~ELKnLqa~-glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE-PavI 85 (573)
++||+|.+.+.-+ ....+ +...+.+.|++++.. |-|..|.||+.|.+.+-. . -.|..|-.-+ +-+|
T Consensus 43 vglv~fs~~~~~~-~~l~~~~~~~~l~~~i~~i~~~~~~t~tg~AL~~a~~~~~~--------~-~~g~r~~~~~~~kvv 112 (224)
T cd01475 43 VGLVQYSSTVKQE-FPLGRFKSKADLKRAVRRMEYLETGTMTGLAIQYAMNNAFS--------E-AEGARPGSERVPRVG 112 (224)
T ss_pred EEEEEecCceeEE-ecccccCCHHHHHHHHHhCcCCCCCChHHHHHHHHHHHhCC--------h-hcCCCCCCCCCCeEE
Confidence 4678888876432 34432 456788888888764 467889999998875210 0 0122221112 5789
Q ss_pred EEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccc-cceeeEEEEeecCCcccCCCchHHHHHhHhCC-ceEEEcC
Q psy11584 86 VVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRW-DQRLFSLVLQRDMGVVACDNSPIDAMCEVTGG-RSYCVTS 163 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRW-DQRLFslVL~~~~g~vp~d~spI~amCEvTGG-rsy~v~S 163 (573)
|++|||.. ...+.+-. .++ |. .-++|+|-+ |. .+...|..|...+++ ..|.+.+
T Consensus 113 illTDG~s---~~~~~~~a----------~~l-----k~~gv~i~~Vgv----G~--~~~~~L~~ias~~~~~~~f~~~~ 168 (224)
T cd01475 113 IVVTDGRP---QDDVSEVA----------AKA-----RALGIEMFAVGV----GR--ADEEELREIASEPLADHVFYVED 168 (224)
T ss_pred EEEcCCCC---cccHHHHH----------HHH-----HHCCcEEEEEeC----Cc--CCHHHHHHHhCCCcHhcEEEeCC
Confidence 99999962 22221100 011 11 136777765 32 345678888877654 6789999
Q ss_pred HHHHHHHHHHHHHh
Q psy11584 164 HRMLLQCIDSLVQK 177 (573)
Q Consensus 164 ~k~L~qciesLvqk 177 (573)
...|.+.++.|.++
T Consensus 169 ~~~l~~~~~~l~~~ 182 (224)
T cd01475 169 FSTIEELTKKFQGK 182 (224)
T ss_pred HHHHHHHhhhcccc
Confidence 98887666665543
No 32
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=92.34 E-value=0.24 Score=44.73 Aligned_cols=133 Identities=22% Similarity=0.325 Sum_probs=78.0
Q ss_pred hhccccccccccccccccc--chHHHHHHh-hccc-cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWKE--NLTTFMTEL-KNLQ-CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke--n~~~F~~EL-KnLq-a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
.++++|.+.+.-+ ..-.+ +...+.+.+ ..+. ..|-|.++.||+.|++.|.-. -.|..| -.+-+|
T Consensus 40 v~iv~f~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~g~t~~~~aL~~a~~~l~~~---------~~~~r~--~~~~~i 107 (178)
T PF00092_consen 40 VGIVTFSDSARVL-FSLTDYQSKNDLLNAINDSIPSSGGGTNLGAALKFAREQLFSS---------NNGGRP--NSPKVI 107 (178)
T ss_dssp EEEEEESSSEEEE-EETTSHSSHHHHHHHHHTTGGCCBSSB-HHHHHHHHHHHTTSG---------GGTTGT--TSEEEE
T ss_pred cceeeeecccccc-cccccccccccccccccccccccchhhhHHHHHhhhhhccccc---------cccccc--ccccce
Confidence 3578888777622 22222 356788887 4443 468999999999999998765 122222 778999
Q ss_pred EEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhH--hCCceEEEcC
Q psy11584 86 VVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEV--TGGRSYCVTS 163 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEv--TGGrsy~v~S 163 (573)
|+||||..-...........+-. + ..++.+.+.. -..+..-+..|... .+|..+++.+
T Consensus 108 iliTDG~~~~~~~~~~~~~~~~~-----------~-----~~i~~~~ig~----~~~~~~~l~~la~~~~~~~~~~~~~~ 167 (178)
T PF00092_consen 108 ILITDGNSNDSDSPSEEAANLKK-----------S-----NGIKVIAIGI----DNADNEELRELASCPTSEGHVFYLAD 167 (178)
T ss_dssp EEEESSSSSSHSGHHHHHHHHHH-----------H-----CTEEEEEEEE----SCCHHHHHHHHSHSSTCHHHEEEESS
T ss_pred EEEEeecccCCcchHHHHHHHHH-----------h-----cCcEEEEEec----CcCCHHHHHHHhCCCCCCCcEEEcCC
Confidence 99999983221111110011100 0 2344444422 12334456666533 3477899999
Q ss_pred HHHHHHHHHHH
Q psy11584 164 HRMLLQCIDSL 174 (573)
Q Consensus 164 ~k~L~qciesL 174 (573)
...|.+.++.+
T Consensus 168 ~~~l~~~~~~~ 178 (178)
T PF00092_consen 168 FSDLSQIIQQM 178 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999887764
No 33
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=92.12 E-value=0.31 Score=50.56 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=79.2
Q ss_pred hcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEec
Q psy11584 11 SSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITD 90 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTD 90 (573)
++|+|----+.|-+---.+-+.+.++|+.|.+-|-|.|..||+.|.+++-..+-+.- .+-.++|+|||
T Consensus 119 avI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p------------~~~~~~vviTD 186 (261)
T COG1240 119 AVIAFRGEKAELLLPPTSSVELAERALERLPTGGKTPLADALRQAYEVLAREKRRGP------------DRRPVMVVITD 186 (261)
T ss_pred EEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCC------------CcceEEEEEeC
Confidence 567776555555555556778999999999999999999999999999987665421 13458999999
Q ss_pred CCCccCCCCcccccccCCCCCCCCCCCCCCCcccccee-----eEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHH
Q psy11584 91 GGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRL-----FSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHR 165 (573)
Q Consensus 91 G~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRL-----FslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k 165 (573)
|- .+.++..+ ...|.+-|--++ -.+|+....+. ---.-...||..-||++|-+....
T Consensus 187 Gr---~n~~~~~~-------------~~~e~~~~a~~~~~~g~~~lvid~e~~~--~~~g~~~~iA~~~Gg~~~~L~~l~ 248 (261)
T COG1240 187 GR---ANVPIPLG-------------PKAETLEAASKLRLRGIQLLVIDTEGSE--VRLGLAEEIARASGGEYYHLDDLS 248 (261)
T ss_pred Cc---cCCCCCCc-------------hHHHHHHHHHHHhhcCCcEEEEecCCcc--ccccHHHHHHHHhCCeEEeccccc
Confidence 97 22222111 111111111110 11222211111 012346799999999999998765
Q ss_pred HH
Q psy11584 166 ML 167 (573)
Q Consensus 166 ~L 167 (573)
..
T Consensus 249 ~~ 250 (261)
T COG1240 249 DD 250 (261)
T ss_pred ch
Confidence 54
No 34
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=92.07 E-value=0.27 Score=46.10 Aligned_cols=72 Identities=26% Similarity=0.221 Sum_probs=46.2
Q ss_pred hhhccccccccccc-ccc--cccchHH---HHHHhhcc-ccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 9 LLSSLFFITHASAS-YAG--WKENLTT---FMTELKNL-QCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 9 ~~~llT~ee~p~~V-KaG--Wken~~~---F~~ELKnL-qa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
-+++++|.+...-+ +.. +-++... +++.|.++ .+.|-|.++.||..|.+.|...+ + +|.. -
T Consensus 41 ~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~---~------~r~~---~ 108 (186)
T cd01471 41 NLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTR---G------NREN---A 108 (186)
T ss_pred EEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccC---C------Cccc---C
Confidence 35788898766532 112 2234444 55665544 47899999999999999986320 0 1211 1
Q ss_pred CcEEEEEecCC
Q psy11584 82 PAVIVVITDGG 92 (573)
Q Consensus 82 PavII~iTDG~ 92 (573)
+.+||++|||.
T Consensus 109 ~~~villTDG~ 119 (186)
T cd01471 109 PQLVIIMTDGI 119 (186)
T ss_pred ceEEEEEccCC
Confidence 56899999997
No 35
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=91.22 E-value=0.45 Score=43.98 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=46.7
Q ss_pred hhcccccccccccccccc--cchHHHHHHhhccc-cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWK--ENLTTFMTELKNLQ-CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk--en~~~F~~ELKnLq-a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
.+|++|...+..+ .... .+...+++.|..+. +.|-|.++.||..|.+.+-. + ..| +| + --+-+||
T Consensus 41 vgli~fs~~~~~~-~~l~~~~~~~~l~~~l~~~~~~~g~T~~~~aL~~a~~~~~~-~-~~~------~r-~--~~~k~ii 108 (164)
T cd01482 41 VGLVQYSDDPRTE-FDLNAYTSKEDVLAAIKNLPYKGGNTRTGKALTHVREKNFT-P-DAG------AR-P--GVPKVVI 108 (164)
T ss_pred EEEEEECCCeeEE-EecCCCCCHHHHHHHHHhCcCCCCCChHHHHHHHHHHHhcc-c-ccC------CC-C--CCCEEEE
Confidence 4578887765332 2222 34567888888887 57799999999998875422 1 111 12 1 1367899
Q ss_pred EEecCC
Q psy11584 87 VITDGG 92 (573)
Q Consensus 87 ~iTDG~ 92 (573)
++|||.
T Consensus 109 llTDG~ 114 (164)
T cd01482 109 LITDGK 114 (164)
T ss_pred EEcCCC
Confidence 999997
No 36
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=90.39 E-value=0.22 Score=49.80 Aligned_cols=82 Identities=29% Similarity=0.349 Sum_probs=52.2
Q ss_pred hhcccccccccccccccccchHHHHHHhh-----ccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELK-----NLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELK-----nLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
+|+|||+. ++.+-+- .-+++ -|-+.|-|.||+||..|.|+..- |.| --|..|.|-+ .| .
T Consensus 47 lsIVTF~~-~a~~~~p--------f~~~~nF~~p~L~a~GgT~lGaAl~~a~d~Ie~-~~~-~~~a~~kgdy----rP-~ 110 (207)
T COG4245 47 LSIVTFGG-PARVIQP--------FTDAANFNPPILTAQGGTPLGAALTLALDMIEE-RKR-KYDANGKGDY----RP-W 110 (207)
T ss_pred EEEEEecC-cceEEec--------hhhHhhcCCCceecCCCCchHHHHHHHHHHHHH-HHh-hcccCCcccc----ce-E
Confidence 56778876 4433221 22344 45567999999999999999753 222 2455555532 23 4
Q ss_pred EEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccce
Q psy11584 85 IVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQR 127 (573)
Q Consensus 85 II~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQR 127 (573)
|+++|||. | -.+.+.+.++|+|.
T Consensus 111 vfLiTDG~--------------P------tD~w~~~~~~~~~~ 133 (207)
T COG4245 111 VFLITDGE--------------P------TDDWQAGAALVFQG 133 (207)
T ss_pred EEEecCCC--------------c------chHHHhHHHHhhhc
Confidence 78899998 2 23566667777764
No 37
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=89.46 E-value=0.83 Score=40.82 Aligned_cols=119 Identities=22% Similarity=0.299 Sum_probs=71.8
Q ss_pred hhccccccccccccccc--ccchHHHHHHhhccc--cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGW--KENLTTFMTELKNLQ--CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGW--ken~~~F~~ELKnLq--a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
+.+++|.+....+ +.+ ......+...++++. +.|.+.++.||+.|++.+...+... | +. ...+|
T Consensus 42 i~ii~f~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~--------~-~~--~~~~i 109 (177)
T smart00327 42 VGLVTFSDDATVL-FPLNDSRSKDALLEALASLSYKLGGGTNLGAALQYALENLFSKSAGS--------R-RG--APKVL 109 (177)
T ss_pred EEEEEeCCCceEE-EcccccCCHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhcCcCCCC--------C-CC--CCeEE
Confidence 3567787743332 344 556778999999999 5899999999999998875222111 1 11 17789
Q ss_pred EEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEE
Q psy11584 86 VVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYC 160 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~ 160 (573)
|++|||..-.. ..+.+.+. ++.+.. -+++.|.+.. ..+...+..+++.+||....
T Consensus 110 viitDg~~~~~-~~~~~~~~----------~~~~~~----i~i~~i~~~~-----~~~~~~l~~~~~~~~~~~~~ 164 (177)
T smart00327 110 ILITDGESNDG-GDLLKAAK----------ELKRSG----VKVFVVGVGN-----DVDEEELKKLASAPGGVYVF 164 (177)
T ss_pred EEEcCCCCCCC-ccHHHHHH----------HHHHCC----CEEEEEEccC-----ccCHHHHHHHhCCCcceEEe
Confidence 99999973221 11111111 011111 3455555521 11567899999999996543
No 38
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=87.14 E-value=1.5 Score=37.72 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=49.5
Q ss_pred hhhhccccccccccccccccc--chHHHHHHhhccc--cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCc
Q psy11584 8 ILLSSLFFITHASASYAGWKE--NLTTFMTELKNLQ--CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83 (573)
Q Consensus 8 ~~~~llT~ee~p~~VKaGWke--n~~~F~~ELKnLq--a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPa 83 (573)
.-+++++|.+.+.-+ ..+.+ +...+.+.+..++ ..|-|.+..||..|.+.+...- ..-.+.
T Consensus 39 ~~i~v~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~al~~~~~~~~~~~--------------~~~~~~ 103 (161)
T cd00198 39 DRVGLVTFGSNARVV-LPLTTDTDKADLLEAIDALKKGLGGGTNIGAALRLALELLKSAK--------------RPNARR 103 (161)
T ss_pred cEEEEEEecCcccee-ecccccCCHHHHHHHHHhcccCCCCCccHHHHHHHHHHHhcccC--------------CCCCce
Confidence 345677888743322 34433 5677777777777 6789999999999999876543 123578
Q ss_pred EEEEEecCC
Q psy11584 84 VIVVITDGG 92 (573)
Q Consensus 84 vII~iTDG~ 92 (573)
+||+||||.
T Consensus 104 ~lvvitDg~ 112 (161)
T cd00198 104 VIILLTDGE 112 (161)
T ss_pred EEEEEeCCC
Confidence 999999997
No 39
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=84.83 E-value=2.3 Score=40.17 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=75.1
Q ss_pred hhccccccccccccccccc--chHHHHHHhhccc-cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWKE--NLTTFMTELKNLQ-CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke--n~~~F~~ELKnLq-a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
.+||+|.+.+.- -..+.+ +...+++.+++++ ..|-|.++.||+.|.+.|-.. ..|.-|. .+-+||
T Consensus 41 vgvv~fs~~~~~-~~~l~~~~~~~~~~~~i~~~~~~~g~T~~~~AL~~a~~~l~~~---------~~g~R~~--~~kv~i 108 (177)
T cd01469 41 FGLVQYSESFRT-EFTLNEYRTKEEPLSLVKHISQLLGLTNTATAIQYVVTELFSE---------SNGARKD--ATKVLV 108 (177)
T ss_pred EEEEEECCceeE-EEecCccCCHHHHHHHHHhCccCCCCccHHHHHHHHHHHhcCc---------ccCCCCC--CCeEEE
Confidence 467888877643 234443 3456778888775 456899999999999875311 1122222 478999
Q ss_pred EEecCCCccCCCCcc-cccccCCCCCCCCCCCCCCCccc-cceeeEEEEeecCCcccCCCchHHHHHhHhCC-ceEEEcC
Q psy11584 87 VITDGGKLSNATGVQ-EDFNLPMHSPIPGSEMTREPFRW-DQRLFSLVLQRDMGVVACDNSPIDAMCEVTGG-RSYCVTS 163 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~-~el~Lp~~s~~pGsELTkEPFRW-DQRLFslVL~~~~g~vp~d~spI~amCEvTGG-rsy~v~S 163 (573)
+||||. +..+.. ++. .++ .|. .-++|+|-+..... -..+..-+..|+..+++ ..|.+.+
T Consensus 109 llTDG~---~~~~~~~~~~-------------~~~-~k~~gv~v~~Vgvg~~~~-~~~~~~~L~~ias~p~~~h~f~~~~ 170 (177)
T cd01469 109 VITDGE---SHDDPLLKDV-------------IPQ-AEREGIIRYAIGVGGHFQ-RENSREELKTIASKPPEEHFFNVTD 170 (177)
T ss_pred EEeCCC---CCCccccHHH-------------HHH-HHHCCcEEEEEEeccccc-ccccHHHHHHHhcCCcHHhEEEecC
Confidence 999998 222221 111 000 111 34678888732210 01223567788888876 4556777
Q ss_pred HHHHH
Q psy11584 164 HRMLL 168 (573)
Q Consensus 164 ~k~L~ 168 (573)
...|.
T Consensus 171 ~~~l~ 175 (177)
T cd01469 171 FAALK 175 (177)
T ss_pred HHHhc
Confidence 76664
No 40
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=84.83 E-value=2.2 Score=41.67 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=43.5
Q ss_pred hccccccccccccccccc--chHHHHHHhhc----cccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 11 SSLFFITHASASYAGWKE--NLTTFMTELKN----LQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWke--n~~~F~~ELKn----Lqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
.||+|.+.+.-.- --.+ +...+.+.|++ +...|-|.++.||+.|+++|.-. . .| +|. --|-+
T Consensus 67 GlV~fs~~a~~~~-~L~d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~--~-----~~-~R~---~v~kv 134 (193)
T cd01477 67 GLVTYNSNATVVA-DLNDLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAG--K-----RT-SRE---NYKKV 134 (193)
T ss_pred EEEEccCceEEEE-ecccccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhh--h-----cc-ccC---CCCeE
Confidence 3466665443222 1111 34567777774 33557899999999999988532 0 01 342 25889
Q ss_pred EEEEecCC
Q psy11584 85 IVVITDGG 92 (573)
Q Consensus 85 II~iTDG~ 92 (573)
||+||||+
T Consensus 135 vIllTDg~ 142 (193)
T cd01477 135 VIVFASDY 142 (193)
T ss_pred EEEEecCc
Confidence 99999985
No 41
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=83.25 E-value=2.4 Score=41.09 Aligned_cols=70 Identities=20% Similarity=0.354 Sum_probs=43.6
Q ss_pred hhccccccccccccccccc----chHHHHHHhhccc----cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASYAGWKE----NLTTFMTELKNLQ----CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke----n~~~F~~ELKnLq----a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++||+|.+.+..+ ..+.. +...+.+.+++|. ..|-|.+|.||+.|.+.+-.. .||-+- -
T Consensus 42 vgvv~fs~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~----------~~~r~~--~ 108 (192)
T cd01473 42 VGILLFAEKNRDV-VPFSDEERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKH----------GNRRKD--A 108 (192)
T ss_pred EEEEEecCCceeE-EecCcccccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccC----------CCCccc--C
Confidence 4678888777432 23322 2345555555553 368899999999997765211 122221 3
Q ss_pred CcEEEEEecCC
Q psy11584 82 PAVIVVITDGG 92 (573)
Q Consensus 82 PavII~iTDG~ 92 (573)
|-|+|+||||.
T Consensus 109 ~kv~IllTDG~ 119 (192)
T cd01473 109 PKVTMLFTDGN 119 (192)
T ss_pred CeEEEEEecCC
Confidence 88999999997
No 42
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=77.54 E-value=5 Score=40.04 Aligned_cols=122 Identities=20% Similarity=0.321 Sum_probs=68.8
Q ss_pred ccccccccccccccccchHHHHHHhhccc---cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 13 LFFITHASASYAGWKENLTTFMTELKNLQ---CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 13 lT~ee~p~~VKaGWken~~~F~~ELKnLq---a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
++..+.-+.+-.----|....++.|++++ +.|-..|--||..|-..|. .+-.||. | - ||+|.
T Consensus 44 i~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~SLqN~Le~A~~~L~------~~p~~~s-r-------E-Ilvi~ 108 (193)
T PF04056_consen 44 IVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEPSLQNGLEMARSSLK------HMPSHGS-R-------E-ILVIF 108 (193)
T ss_pred eeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCChhHHHHHHHHHHHHh------hCccccc-e-------E-EEEEE
Confidence 34444433333222235666777777665 8999999999999999985 2223443 2 1 33333
Q ss_pred cCCCccCCCC-cccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHHHH
Q psy11584 90 DGGKLSNATG-VQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLL 168 (573)
Q Consensus 90 DG~~lt~~~G-v~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~L~ 168 (573)
|+-.|++.| +.+-+. .|.+|--| -++| |+ ..+...++.+|+.|||..+.+-+...+.
T Consensus 109 -gSl~t~Dp~di~~ti~----------~l~~~~Ir-----vsvI-----~l-aaEv~I~k~i~~~T~G~y~V~lde~H~~ 166 (193)
T PF04056_consen 109 -GSLTTCDPGDIHETIE----------SLKKENIR-----VSVI-----SL-AAEVYICKKICKETGGTYGVILDEDHFK 166 (193)
T ss_pred -eecccCCchhHHHHHH----------HHHHcCCE-----EEEE-----EE-hHHHHHHHHHHHhhCCEEEEecCHHHHH
Confidence 655555544 221111 11222222 1111 11 1123568899999999999999988777
Q ss_pred HHH
Q psy11584 169 QCI 171 (573)
Q Consensus 169 qci 171 (573)
..|
T Consensus 167 ~lL 169 (193)
T PF04056_consen 167 ELL 169 (193)
T ss_pred HHH
Confidence 543
No 43
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=75.61 E-value=6.1 Score=37.94 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=36.5
Q ss_pred hHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCC
Q psy11584 30 LTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGG 92 (573)
Q Consensus 30 ~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~ 92 (573)
.+.+.+-+.++++.|-|.++.+|..|.+-+-...-.. ...| ++.+||+||||.
T Consensus 66 ~~~v~~~~~~~~p~G~T~l~~~l~~a~~~~~~~~~~~-------~~~p---~~~~vIiiTDG~ 118 (199)
T cd01457 66 SSKVDQLFAENSPDGGTNLAAVLQDALNNYFQRKENG-------ATCP---EGETFLVITDGA 118 (199)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHhhc-------cCCC---CceEEEEEcCCC
Confidence 4556666778888999999999999985432221110 1122 369999999997
No 44
>KOG2353|consensus
Probab=74.49 E-value=4.1 Score=49.88 Aligned_cols=105 Identities=25% Similarity=0.407 Sum_probs=66.1
Q ss_pred cchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCCCCcccccccC
Q psy11584 28 ENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLP 107 (573)
Q Consensus 28 en~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~~Gv~~el~Lp 107 (573)
.|...|-++++.|++.|.+....||..||+||. + .+.=..|.=|.|++ -+|++||||.-=+ ..-| |...
T Consensus 289 ~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~-~---~n~s~~~~~~~~C~---~~iml~tdG~~~~-~~~I---f~~y 357 (1104)
T KOG2353|consen 289 RNKKVFKEAIETLDAKGIANYTAALEYAFSLLR-D---YNDSRANTQRSPCN---QAIMLITDGVDEN-AKEI---FEKY 357 (1104)
T ss_pred HHHHHHHHHHhhhccccccchhhhHHHHHHHHH-H---hccccccccccccc---eeeEEeecCCccc-HHHH---HHhh
Confidence 467889999999999999999999999999999 2 11112222244565 3789999997211 1111 2221
Q ss_pred CCCCCCCCCCCCCCccc---cceeeEEEEeecCCcccCCCchHH-HHHhHhCCceEEEc
Q psy11584 108 MHSPIPGSEMTREPFRW---DQRLFSLVLQRDMGVVACDNSPID-AMCEVTGGRSYCVT 162 (573)
Q Consensus 108 ~~s~~pGsELTkEPFRW---DQRLFslVL~~~~g~vp~d~spI~-amCEvTGGrsy~v~ 162 (573)
-| .-|+|+.++..... +-..|. -.|+.-|+-.+.+.
T Consensus 358 ---------------n~~~~~Vrvftflig~~~~----~~~~~~wmac~n~gyy~~I~~ 397 (1104)
T KOG2353|consen 358 ---------------NWPDKKVRVFTFLIGDEVY----DLDEIQWMACANKGYYVHIIS 397 (1104)
T ss_pred ---------------ccCCCceEEEEEEeccccc----ccccchhhhhhCCCceEeccc
Confidence 12 45899999843221 122344 34777777655443
No 45
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=65.04 E-value=16 Score=36.06 Aligned_cols=119 Identities=8% Similarity=0.098 Sum_probs=71.1
Q ss_pred hcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEec
Q psy11584 11 SSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITD 90 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTD 90 (573)
.||+|-..-+.+.+---.++..++..|+++++.|-+.++.||..|...|.. .+++|+. .-+||++++
T Consensus 50 Glv~fag~~a~v~~plT~D~~~~~~~L~~i~~~g~~~l~~AL~~A~~~L~~------~~~~~~~-------~rivi~v~S 116 (187)
T cd01452 50 GLMTMAGNSPEVLVTLTNDQGKILSKLHDVQPKGKANFITGIQIAQLALKH------RQNKNQK-------QRIVAFVGS 116 (187)
T ss_pred EEEEecCCceEEEECCCCCHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc------CCCcCCc-------ceEEEEEec
Confidence 356666644555544445789999999999999999999999999988863 3555543 345666666
Q ss_pred CCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhC--CceEEE
Q psy11584 91 GGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTG--GRSYCV 161 (573)
Q Consensus 91 G~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTG--Grsy~v 161 (573)
++.- ...++.+-. .+|-++ .=|++.|.+ |.......-+++++|... +-|..|
T Consensus 117 ~~~~-d~~~i~~~~----------~~lkk~----~I~v~vI~~----G~~~~~~~~l~~~~~~~~~~~~s~~~ 170 (187)
T cd01452 117 PIEE-DEKDLVKLA----------KRLKKN----NVSVDIINF----GEIDDNTEKLTAFIDAVNGKDGSHLV 170 (187)
T ss_pred CCcC-CHHHHHHHH----------HHHHHc----CCeEEEEEe----CCCCCCHHHHHHHHHHhcCCCCceEE
Confidence 6421 222222111 112222 235677777 321122356888888873 335443
No 46
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=62.67 E-value=18 Score=34.16 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=46.4
Q ss_pred hhhccccccccccccccccc--chHHHHHHhhccccCC--CchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 9 LLSSLFFITHASASYAGWKE--NLTTFMTELKNLQCTG--MTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 9 ~~~llT~ee~p~~VKaGWke--n~~~F~~ELKnLqa~g--lt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
-..+|+|-+.+. +...+.+ +...+++.+.+++-.| -|..|.||+.+.+.+=.. ..|.-+-.-=|-+
T Consensus 40 rVgvv~ys~~~~-~~~~l~~~~~~~~l~~~i~~i~~~~g~~t~t~~AL~~~~~~~f~~---------~~g~R~~~~~~kv 109 (165)
T cd01481 40 RVAVVQFSDTPR-PEFYLNTHSTKADVLGAVRRLRLRGGSQLNTGSALDYVVKNLFTK---------SAGSRIEEGVPQF 109 (165)
T ss_pred EEEEEEecCCee-EEEeccccCCHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhcCc---------cccCCccCCCCeE
Confidence 456788877663 2244443 4577899999987764 367999999887644110 1121111122678
Q ss_pred EEEEecCC
Q psy11584 85 IVVITDGG 92 (573)
Q Consensus 85 II~iTDG~ 92 (573)
+|+||||.
T Consensus 110 ~vviTdG~ 117 (165)
T cd01481 110 LVLITGGK 117 (165)
T ss_pred EEEEeCCC
Confidence 99999997
No 47
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=57.89 E-value=44 Score=33.37 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHhhcccc-----CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCCCCcc
Q psy11584 31 TTFMTELKNLQC-----TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQ 101 (573)
Q Consensus 31 ~~F~~ELKnLqa-----~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~~Gv~ 101 (573)
..++++|+.... .....+|.||+.|..+|...- .-..||+++.|-+-.+++.+.
T Consensus 96 ~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-----------------~gGkI~~f~sg~pt~GpG~l~ 154 (239)
T cd01468 96 HDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-----------------AGGRIIVFQGGLPTVGPGKLK 154 (239)
T ss_pred HHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-----------------CCceEEEEECCCCCCCCCccc
Confidence 345566665542 345789999999999998653 237789999997655665554
No 48
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=55.22 E-value=56 Score=33.08 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=34.6
Q ss_pred hHHHHHHhhcccc---CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCCCCc
Q psy11584 30 LTTFMTELKNLQC---TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGV 100 (573)
Q Consensus 30 ~~~F~~ELKnLqa---~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~~Gv 100 (573)
...++++|+..-. ...+.+|.||+.|..+|. +.| +-||+++.|-.-.+++.+
T Consensus 96 i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~---------~~G----------GkIi~f~s~~pt~GpG~l 150 (244)
T cd01479 96 IEDLLDQIPEMFQDTKETESALGPALQAAFLLLK---------ETG----------GKIIVFQSSLPTLGAGKL 150 (244)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---------hcC----------CEEEEEeCCCCCcCCccc
Confidence 3455666655422 346889999999999998 222 378888888654444444
No 49
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=47.57 E-value=40 Score=35.21 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=46.5
Q ss_pred hhcccccccccccccccccchH--HHHHHhhccc-cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWKENLT--TFMTELKNLQ-CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~--~F~~ELKnLq-a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++++.|-+.|.-+- ---++++ .+.+.+..+. ..+-|+++.+|..|.++++-.|.++. .|. ---+||
T Consensus 101 vgVv~Fg~~~~~v~-Plt~d~~~~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~-----s~~-----~~qlil 169 (266)
T cd01460 101 LGVCSFGEDVQILH-PFDEQFSSQSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSS-----SGS-----LWQLLL 169 (266)
T ss_pred EEEEEeCCCceEeC-CCCCCchhhHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhcccc-----ccc-----cccEEE
Confidence 35677777665443 3334444 3444443221 23678999999999999976664332 111 135899
Q ss_pred EEecCCCccCC
Q psy11584 87 VITDGGKLSNA 97 (573)
Q Consensus 87 ~iTDG~~lt~~ 97 (573)
+||||.+.-+.
T Consensus 170 LISDG~~~~~e 180 (266)
T cd01460 170 IISDGRGEFSE 180 (266)
T ss_pred EEECCCcccCc
Confidence 99999854333
No 50
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=45.77 E-value=1.1e+02 Score=28.56 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=32.3
Q ss_pred chHHHHHhHhCCceEEEcCHHHHHHHHHHHHHhcccceEEe
Q psy11584 145 SPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVIN 185 (573)
Q Consensus 145 spI~amCEvTGGrsy~v~S~k~L~qciesLvqkvq~gVVin 185 (573)
....++++.-|..++.|.+...|.+.++..... ...++|+
T Consensus 129 ~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lie 168 (172)
T cd02004 129 TRYDLVAEAFGGKGELVTTPEELKPALKRALAS-GKPALIN 168 (172)
T ss_pred CCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHc-CCCEEEE
Confidence 347899999999999999999999999987753 3444554
No 51
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=45.54 E-value=46 Score=33.69 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=41.7
Q ss_pred ccccccccccccccccchHHHHHHhh----ccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEE
Q psy11584 13 LFFITHASASYAGWKENLTTFMTELK----NLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVI 88 (573)
Q Consensus 13 lT~ee~p~~VKaGWken~~~F~~ELK----nLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~i 88 (573)
.+|......+..-=-.|+..+++|+. ++..-|=|....+|+.+.+.--... + .-.|+.||.|
T Consensus 46 ~~Fs~~~~~~~~vt~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~---~-----------~~~P~~VlFi 111 (200)
T PF10138_consen 46 WFFSTEFDRLPDVTLDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKRE---P-----------SDAPALVLFI 111 (200)
T ss_pred EEeCCCCCcCCCcCHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcC---C-----------CCCCeEEEEE
Confidence 44444444444333346667777763 3455577999999998766433221 1 1139999999
Q ss_pred ecCCC
Q psy11584 89 TDGGK 93 (573)
Q Consensus 89 TDG~~ 93 (573)
|||+.
T Consensus 112 TDG~~ 116 (200)
T PF10138_consen 112 TDGGP 116 (200)
T ss_pred ecCCc
Confidence 99984
No 52
>PF14140 YpzI: YpzI-like protein
Probab=42.91 E-value=11 Score=29.50 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhccC
Q psy11584 559 LKRMKIQAKDEFDRN 573 (573)
Q Consensus 559 lkklk~qaK~e~d~~ 573 (573)
=||||++-++|.||+
T Consensus 7 EkKLk~s~rvesDRD 21 (42)
T PF14140_consen 7 EKKLKASGRVESDRD 21 (42)
T ss_pred HHHHHHcCCcccccc
Confidence 389999999999985
No 53
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=40.38 E-value=61 Score=34.02 Aligned_cols=110 Identities=23% Similarity=0.327 Sum_probs=61.4
Q ss_pred HHHHHHhhccccC--------CCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCC-----
Q psy11584 31 TTFMTELKNLQCT--------GMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNA----- 97 (573)
Q Consensus 31 ~~F~~ELKnLqa~--------glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~----- 97 (573)
++..+||++|-.. .-+.|..||..|+= ..||++......| -.+.+-++|+++=.....+.
T Consensus 93 ~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALC--yINR~~~~~~~~~-----~~~~~RILv~~s~s~d~~~QYi~~M 165 (276)
T PF03850_consen 93 ETVLEELKKLMSETSESSDSTTSSLLAGALSMALC--YINRISRESPSGG-----TSLKSRILVIVSGSPDSSSQYIPLM 165 (276)
T ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHHHHH--HHhhhhhcccCCC-----CCcCccEEEEEecCCCccHHHHHHH
Confidence 3456666666542 22789999988865 5567766654433 44566666642221111100
Q ss_pred CCc--ccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHHHHHHHHH
Q psy11584 98 TGV--QEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDS 173 (573)
Q Consensus 98 ~Gv--~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~L~qcies 173 (573)
|-+ .+...++.+. .. .|. .|+.-+...|+.|||..+.+...+.|.|-|=.
T Consensus 166 N~iFaAqk~~v~IDv--------------------~~----L~~--~~s~fLqQa~d~T~G~y~~~~~~~~l~q~L~~ 217 (276)
T PF03850_consen 166 NCIFAAQKQKVPIDV--------------------CK----LGG--KDSTFLQQASDITGGIYLKVSKPEGLLQYLLT 217 (276)
T ss_pred HHHHHHhcCCceeEE--------------------EE----ecC--CchHHHHHHHHHhCceeeccCccccHHHHHHH
Confidence 000 0122222221 11 121 35667899999999999999997777665443
No 54
>KOG1185|consensus
Probab=34.36 E-value=61 Score=37.21 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=36.8
Q ss_pred hHHHHHhHhCCceEEEcCHHHHHHHHHHHHHhcccceEEee
Q psy11584 146 PIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINF 186 (573)
Q Consensus 146 pI~amCEvTGGrsy~v~S~k~L~qciesLvqkvq~gVVinF 186 (573)
-.+.||+.-||+.|.|.+...|..|+..-.|.-....|||-
T Consensus 517 rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINV 557 (571)
T KOG1185|consen 517 RYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINV 557 (571)
T ss_pred cHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 36799999999999999999999999998888877788884
No 55
>PRK10997 yieM hypothetical protein; Provisional
Probab=32.87 E-value=63 Score=36.70 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=61.4
Q ss_pred cccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecC
Q psy11584 12 SLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDG 91 (573)
Q Consensus 12 llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG 91 (573)
++.|.+........=+.+...+++-|... ..|-|++..+|+.|++.+....- .-+.||+|||+
T Consensus 364 li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GGTDl~~aL~~al~~l~~~~~----------------r~adIVVISDF 426 (487)
T PRK10997 364 IMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGGTDLAPCLRAIIEKMQGREW----------------FDADAVVISDF 426 (487)
T ss_pred EEEecCCceeeccCCccCHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHccccc----------------CCceEEEECCC
Confidence 57787755543222233455555555544 47889999999999998864221 24669999999
Q ss_pred CCccCCCCccccc-ccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhH
Q psy11584 92 GKLSNATGVQEDF-NLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEV 153 (573)
Q Consensus 92 ~~lt~~~Gv~~el-~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEv 153 (573)
-.-..+.++.+.+ .|.-. =+.|+|+|.+.. ....-+..+|+.
T Consensus 427 ~~~~~~eel~~~L~~Lk~~--------------~~~rf~~l~i~~------~~~p~l~~ifD~ 469 (487)
T PRK10997 427 IAQRLPDELVAKVKELQRQ--------------HQHRFHAVAMSA------HGKPGIMRIFDH 469 (487)
T ss_pred CCCCChHHHHHHHHHHHHh--------------cCcEEEEEEeCC------CCCchHHHhcCe
Confidence 6322233333333 12211 156899999931 112445666654
No 56
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=32.48 E-value=63 Score=32.13 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=31.3
Q ss_pred HHHhhccc-----cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCC
Q psy11584 34 MTELKNLQ-----CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGG 92 (573)
Q Consensus 34 ~~ELKnLq-----a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~ 92 (573)
.+.|.+++ -.|-|.+|.||+.+.+.+.. +-+ .-++||+||||-
T Consensus 113 ~~~l~~~~~~~~~~~GgTdi~~aL~~~~~~~~~---------------~~~-~~t~vvIiSDg~ 160 (222)
T PF05762_consen 113 EEALARLSALVQSFGGGTDIGQALREFLRQYAR---------------PDL-RRTTVVIISDGW 160 (222)
T ss_pred HHHHHHHHhhccCCCCccHHHHHHHHHHHHhhc---------------ccc-cCcEEEEEeccc
Confidence 34444444 68999999999998876532 223 678999999994
No 57
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=30.86 E-value=2.5e+02 Score=31.84 Aligned_cols=140 Identities=12% Similarity=0.111 Sum_probs=77.4
Q ss_pred HHHHHHhhccccCCC---chhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcc-----------ccCcEEEEEecCCCccC
Q psy11584 31 TTFMTELKNLQCTGM---TLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFF-----------LEPAVIVVITDGGKLSN 96 (573)
Q Consensus 31 ~~F~~ELKnLqa~gl---t~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~-----------lEPavII~iTDG~~lt~ 96 (573)
..|+++|...-..+. .+.|.....+.+.+...+=++-+...+.|=-=|. -+--||.++.||+-+-+
T Consensus 362 ~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~ 441 (575)
T TIGR02720 362 YQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMT 441 (575)
T ss_pred HHHHHHHHHhCCCCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhh
Confidence 457777777554432 3445555555565555443444444443332221 13458888899985444
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEe-ecCCc--------------ccCCCchHHHHHhHhCCceEEE
Q psy11584 97 ATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ-RDMGV--------------VACDNSPIDAMCEVTGGRSYCV 161 (573)
Q Consensus 97 ~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~-~~~g~--------------vp~d~spI~amCEvTGGrsy~v 161 (573)
.+.+. ..-|..-++-.||++ ..-|. +.-+..-..++|+..|+..+.|
T Consensus 442 ~~eL~------------------Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v 503 (575)
T TIGR02720 442 MQDLL------------------TQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV 503 (575)
T ss_pred HHHHH------------------HHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe
Confidence 32221 011222223334441 00000 0011223789999999999999
Q ss_pred cCHHHHHHHHHHHHH-hcccceEEeeee
Q psy11584 162 TSHRMLLQCIDSLVQ-KVQSGVVINFEK 188 (573)
Q Consensus 162 ~S~k~L~qciesLvq-kvq~gVVinFe~ 188 (573)
.+...|...|+..+. +....+||+...
T Consensus 504 ~~~~el~~al~~a~~~~~~~p~liev~i 531 (575)
T TIGR02720 504 NKIEQLPAVFEQAKAIKQGKPVLIDAKI 531 (575)
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEEe
Confidence 999999999999873 225566776554
No 58
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.40 E-value=2.2e+02 Score=32.21 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=35.1
Q ss_pred hHHHHHhHhCCceEEEcCHHHHHHHHHHHHHhc--ccceEEeeee
Q psy11584 146 PIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKV--QSGVVINFEK 188 (573)
Q Consensus 146 pI~amCEvTGGrsy~v~S~k~L~qciesLvqkv--q~gVVinFe~ 188 (573)
-..+|+|..|+.++.|++...|...|+..+..+ ...+||+..-
T Consensus 503 d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i 547 (574)
T PRK07979 503 DFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTV 547 (574)
T ss_pred CHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEE
Confidence 478999999999999999999999999988642 4566775443
No 59
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=27.67 E-value=23 Score=31.17 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=11.8
Q ss_pred ccccccCCCccccc
Q psy11584 456 VRQHMFGNPFKIDK 469 (573)
Q Consensus 456 ~R~h~FgNpfk~dk 469 (573)
-|-.-|||||+..+
T Consensus 19 gR~s~wGNPf~~~~ 32 (86)
T PF14216_consen 19 GRPSKWGNPFRVGE 32 (86)
T ss_pred CCCCcCCCCCcCCC
Confidence 36778999999987
No 60
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=26.86 E-value=45 Score=30.61 Aligned_cols=28 Identities=32% Similarity=0.619 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCC
Q psy11584 50 AALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGK 93 (573)
Q Consensus 50 ~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~ 93 (573)
..++-+|+.++.++. ++.+||.+|||..
T Consensus 67 Tdf~pvf~~~~~~~~----------------~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 67 TDFRPVFEYLEENRP----------------RPSVVIYFTDGEG 94 (126)
T ss_pred CcchHHHHHHHhcCC----------------CCCEEEEEeCCCC
Confidence 345566777776542 4788999999864
No 61
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=26.75 E-value=1e+02 Score=29.36 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=44.3
Q ss_pred ccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCC
Q psy11584 25 GWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGG 92 (573)
Q Consensus 25 GWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~ 92 (573)
|-++-..++.+-|++++..|-|.+..-|+.|-+.-.. ....-. -| .|++.||||.
T Consensus 65 Gi~gvl~~Y~~~~~~v~l~GPT~fapiI~~a~~~a~~--~~~~~~-------~Y----~iLlIlTDG~ 119 (146)
T PF07002_consen 65 GIDGVLEAYRKALPKVQLSGPTNFAPIINHAAKIAKQ--SNQNGQ-------QY----FILLILTDGQ 119 (146)
T ss_pred CHHHHHHHHHHHhhheEECCCccHHHHHHHHHHHHhh--hccCCc-------eE----EEEEEecccc
Confidence 6677788999999999999999999999999998775 222222 22 4899999997
No 62
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=26.49 E-value=1.1e+02 Score=29.96 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=33.9
Q ss_pred hHHHHHHhhcccc------------CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCc
Q psy11584 30 LTTFMTELKNLQC------------TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKL 94 (573)
Q Consensus 30 ~~~F~~ELKnLqa------------~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~l 94 (573)
....+++|+.+.. .+-+.++.||..|.++|... .. ...--.||+||||...
T Consensus 78 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~------------~~--~~~~k~IvL~TDg~~p 140 (218)
T cd01458 78 GAERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKG------------KK--KKSHKRIFLFTNNDDP 140 (218)
T ss_pred CHHHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhc------------cc--cccccEEEEECCCCCC
Confidence 3455666666533 34678999999999999641 00 1124689999999743
No 63
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=25.70 E-value=99 Score=32.14 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=40.2
Q ss_pred cccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCC
Q psy11584 26 WKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGG 92 (573)
Q Consensus 26 Wken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~ 92 (573)
-++-..+.-+-|++++..|-|.++..|++|-+.-..++-+ | ...|++.||||.
T Consensus 115 i~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~--------~------~Y~VLLIiTDG~ 167 (254)
T cd01459 115 FEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQ--------S------KYHILLIITDGE 167 (254)
T ss_pred HHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCC--------C------ceEEEEEECCCC
Confidence 3344456667788999999999999999998876544321 1 378999999996
No 64
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=24.67 E-value=2.2e+02 Score=26.96 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=33.3
Q ss_pred hHHHHHhHhCCceEEEcCHHHHHHHHHHHHHhcccceEEeee
Q psy11584 146 PIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFE 187 (573)
Q Consensus 146 pI~amCEvTGGrsy~v~S~k~L~qciesLvqkvq~gVVinFe 187 (573)
-+.+++|..|++++.+.+...|...++...+. ...++|+..
T Consensus 131 d~~~la~a~G~~~~~v~~~~el~~~l~~a~~~-~~p~liev~ 171 (178)
T cd02014 131 DFAKIAEAMGIKGIRVEDPDELEAALDEALAA-DGPVVIDVV 171 (178)
T ss_pred CHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 47899999999999999999999999888754 445566543
No 65
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.43 E-value=77 Score=33.49 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCchHHHHHhHhCCceEEEcCHHHHHHHH
Q psy11584 143 DNSPIDAMCEVTGGRSYCVTSHRMLLQCI 171 (573)
Q Consensus 143 d~spI~amCEvTGGrsy~v~S~k~L~qci 171 (573)
|..-++.+|+.|||....+.+...|.|-|
T Consensus 189 ~~~~lqQa~~~TgG~Y~~~~~~~~L~q~L 217 (279)
T TIGR00627 189 TSGFLQQAADITGGSYLHVKKPQGLLQYL 217 (279)
T ss_pred ccHHHHHHHHHhCCEEeccCCHhHHHHHH
Confidence 46778999999999888888888776554
No 66
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=22.39 E-value=2.4e+02 Score=27.11 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=35.3
Q ss_pred chHHHHHhHhC----CceEEEcCHHHHHHHHHHHHHhcccceEEeee
Q psy11584 145 SPIDAMCEVTG----GRSYCVTSHRMLLQCIDSLVQKVQSGVVINFE 187 (573)
Q Consensus 145 spI~amCEvTG----Grsy~v~S~k~L~qciesLvqkvq~gVVinFe 187 (573)
.-+..++|..| +++++|.+.+.|.+.++..++..+..+||+.+
T Consensus 126 ~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~ 172 (183)
T cd02005 126 WNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVI 172 (183)
T ss_pred CCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34789999999 69999999999999999998733566677654
Done!