Query psy11584
Match_columns 573
No_of_seqs 97 out of 99
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 22:16:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 98.0 9.5E-06 3.3E-10 86.2 7.7 143 10-187 117-266 (464)
2 3ibs_A Conserved hypothetical 98.0 1.1E-05 3.6E-10 74.4 6.8 131 10-174 53-209 (218)
3 1shu_X Anthrax toxin receptor 97.5 3.9E-05 1.3E-09 68.5 3.4 135 10-178 44-181 (182)
4 3hrz_D Complement factor B; se 97.3 0.00038 1.3E-08 75.7 8.1 149 10-179 284-448 (741)
5 1q0p_A Complement factor B; VO 97.3 0.00063 2.1E-08 62.4 8.3 149 10-177 56-218 (223)
6 1n3y_A Integrin alpha-X; alpha 97.2 3.8E-05 1.3E-09 69.6 -1.0 140 10-178 48-193 (198)
7 2odp_A Complement C2; C3/C5 co 97.1 0.0008 2.7E-08 70.2 7.6 147 10-176 50-211 (509)
8 1ijb_A VON willebrand factor; 97.0 0.0014 4.6E-08 60.7 7.6 135 10-177 54-194 (202)
9 1rrk_A Complement factor B; BB 96.7 0.002 6.9E-08 66.7 6.8 150 10-179 42-206 (497)
10 3zqk_A VON willebrand factor; 96.7 0.0042 1.4E-07 57.3 7.9 126 10-177 62-192 (199)
11 1v7p_C Integrin alpha-2; snake 96.6 0.00045 1.5E-08 63.4 1.2 139 10-178 45-195 (200)
12 2b2x_A Integrin alpha-1; compu 96.6 0.00097 3.3E-08 62.3 3.4 141 10-178 61-211 (223)
13 3n2n_F Anthrax toxin receptor 96.6 0.00054 1.8E-08 61.2 1.4 133 10-178 45-184 (185)
14 2x31_A Magnesium-chelatase 60 96.6 0.0022 7.7E-08 57.8 5.2 69 10-92 44-112 (189)
15 1mf7_A Integrin alpha M; cell 96.5 0.00054 1.9E-08 62.3 1.1 142 10-178 44-189 (194)
16 4hqf_A Thrombospondin-related 96.2 0.0046 1.6E-07 60.1 5.2 135 10-179 63-210 (281)
17 4hqo_A Sporozoite surface prot 96.0 0.0079 2.7E-07 58.3 6.0 137 10-181 60-209 (266)
18 1pt6_A Integrin alpha-1; cell 95.9 0.0017 5.7E-08 60.2 0.8 141 10-179 46-197 (213)
19 2xgg_A Microneme protein 2; A/ 95.5 0.02 6.9E-07 51.6 6.3 71 10-92 58-133 (178)
20 1mjn_A Integrin alpha-L; rossm 95.1 0.0095 3.2E-07 54.0 2.6 134 10-178 41-179 (179)
21 3rag_A Uncharacterized protein 93.6 0.067 2.3E-06 53.3 5.2 80 82-177 10-89 (242)
22 1atz_A VON willebrand factor; 92.9 0.15 5.2E-06 46.0 6.1 135 10-178 46-187 (189)
23 4b4t_W RPN10, 26S proteasome r 87.6 0.74 2.5E-05 46.2 6.1 120 11-162 50-173 (268)
24 3k6s_A Integrin alpha-X; cell 85.7 0.037 1.3E-06 64.8 -5.1 141 10-177 169-313 (1095)
25 1yvr_A RO autoantigen, 60-kDa 82.6 1.2 4.1E-05 47.8 5.2 61 11-92 411-471 (538)
26 3rag_A Uncharacterized protein 82.4 0.71 2.4E-05 46.0 3.1 52 11-63 175-229 (242)
27 2x5n_A SPRPN10, 26S proteasome 78.4 2.9 0.0001 39.1 5.8 51 11-61 49-99 (192)
28 1ckk_B Camkk, protein (RAT Ca2 77.6 0.67 2.3E-05 31.8 0.8 10 456-465 17-26 (26)
29 1iq5_B Ca2+/calmodulin depende 69.5 1.2 4.2E-05 30.8 0.5 10 457-466 18-27 (27)
30 2ww8_A RRGA, cell WALL surface 62.7 6.1 0.00021 45.6 4.8 39 40-92 351-389 (893)
31 2nut_A Protein transport prote 45.4 1.2E+02 0.0042 34.3 11.6 46 376-421 572-620 (769)
32 2nvo_A RO sixty-related protei 45.3 19 0.00066 38.7 4.9 117 11-159 407-535 (535)
33 1pcx_A Protein transport prote 38.9 1.3E+02 0.0046 34.2 10.7 136 30-188 287-446 (810)
34 3eh1_A Protein transport prote 35.4 1.6E+02 0.0054 33.4 10.5 140 26-188 248-411 (751)
35 1m2v_B SEC24, protein transpor 33.7 2E+02 0.007 33.4 11.2 137 29-188 402-562 (926)
36 1m2o_A SEC23, protein transpor 27.8 2.4E+02 0.0082 31.9 10.3 45 144-188 355-408 (768)
37 1jey_B KU80; double-strand DNA 22.8 99 0.0034 33.4 5.8 48 329-382 379-428 (565)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.98 E-value=9.5e-06 Score=86.22 Aligned_cols=143 Identities=11% Similarity=0.105 Sum_probs=101.1
Q ss_pred hhcccccccccccccc---c----ccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccC
Q psy11584 10 LSSLFFITHASASYAG---W----KENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEP 82 (573)
Q Consensus 10 ~~llT~ee~p~~VKaG---W----ken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEP 82 (573)
++|++|.+....+.-. + .++...+.+.|++|++.|-|.++.||..|+++|... + -.+
T Consensus 117 v~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~--------------~--~~~ 180 (464)
T 4fx5_A 117 FAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTA--------------P--SAI 180 (464)
T ss_dssp EEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTC--------------T--TSE
T ss_pred EEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcC--------------C--CCC
Confidence 4678998877665321 2 256788999999999999999999999999998641 0 135
Q ss_pred cEEEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEc
Q psy11584 83 AVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVT 162 (573)
Q Consensus 83 avII~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~ 162 (573)
.+||+||||.. ..+....+.--. +..+=.-++|+|-+.. ..|..-+..|++.|||+.|.+.
T Consensus 181 ~~IILLTDG~~---~~~~~~~l~~~~-----------~a~~~~i~i~tiGiG~-----~~d~~~L~~IA~~tgG~~~~v~ 241 (464)
T 4fx5_A 181 KHAILLTDGKD---ESETPADLARAI-----------QSSIGNFTADCRGIGE-----DWEPKELRKIADALLGTVGIIR 241 (464)
T ss_dssp EEEEEEESSCC---TTSCHHHHHHHH-----------HHHTTTCEEEEEEESS-----SSCHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEcCCCC---CCCChHHHHHHH-----------HHhcCCCeEEEEEeCC-----ccCHHHHHHHHHhCCCEEEEcC
Confidence 79999999972 222221111000 0001124678887721 2445779999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccceEEeee
Q psy11584 163 SHRMLLQCIDSLVQKVQSGVVINFE 187 (573)
Q Consensus 163 S~k~L~qciesLvqkvq~gVVinFe 187 (573)
+...|...+..+++++++.++-+.+
T Consensus 242 d~~~L~~~f~~i~~~~~s~~~~dv~ 266 (464)
T 4fx5_A 242 DPATLAEDFREMTAKSMGKEVADVA 266 (464)
T ss_dssp SGGGHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHhhchheeeeE
Confidence 9999999999999888877665543
No 2
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=1.1e-05 Score=74.37 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=85.9
Q ss_pred hhcccccccccccccccccchHHHHHHhhcccc----CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQC----TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa----~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
++|++|.+.+.-+ ..+..+...+.+.|++|++ .|-|.++.||..|.++|... .-.+.+|
T Consensus 53 v~lv~F~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~----------------~~~~~~i 115 (218)
T 3ibs_A 53 VGMIVFAGDAFTQ-LPITSDYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQ----------------EGVGRAI 115 (218)
T ss_dssp EEEEEESSSEEEE-EEEESCHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSC----------------SSCCEEE
T ss_pred EEEEEECCCceEe-CCCCCCHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhC----------------CCCCcEE
Confidence 4678888775443 4566678888888888887 69999999999999887532 1245699
Q ss_pred EEEecCCCccCCCC-cccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCc-c-------------------cCCC
Q psy11584 86 VVITDGGKLSNATG-VQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGV-V-------------------ACDN 144 (573)
Q Consensus 86 I~iTDG~~lt~~~G-v~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~-v-------------------p~d~ 144 (573)
|+||||.. ..+ +.+....- . +=.-++|+|.+..+.|. + ..+.
T Consensus 116 vllTDG~~---~~~~~~~~~~~~----------~----~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~ 178 (218)
T 3ibs_A 116 IVITDGEN---HEGGAVEAAKAA----------A----EKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNE 178 (218)
T ss_dssp EEEECCTT---CCSCHHHHHHHH----------H----TTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCH
T ss_pred EEEcCCCC---CCCcHHHHHHHH----------H----hcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCH
Confidence 99999973 222 21111100 0 01246777777322110 0 2344
Q ss_pred chHHHHHhHhCCceEEEcC-HHHHHHHHHHH
Q psy11584 145 SPIDAMCEVTGGRSYCVTS-HRMLLQCIDSL 174 (573)
Q Consensus 145 spI~amCEvTGGrsy~v~S-~k~L~qciesL 174 (573)
.-++.+|+.|||+.|.+.+ ...+.+.++.|
T Consensus 179 ~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i 209 (218)
T 3ibs_A 179 GMCQEIAKDGKGIYVRVDNSNSAQKAISQEI 209 (218)
T ss_dssp HHHHHHHHHTEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEECCCChHHHHHHHHHH
Confidence 5799999999999999998 55555555544
No 3
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.54 E-value=3.9e-05 Score=68.47 Aligned_cols=135 Identities=14% Similarity=0.179 Sum_probs=85.9
Q ss_pred hhcccccccccccccccccchHHH---HHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWKENLTTF---MTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F---~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++|++|.+.+..+ ..+..+...+ +++|+.+.+.|-|.++.||..|.+.|...+ + .-.+.+||
T Consensus 44 v~lv~f~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~g~T~~~~al~~a~~~l~~~~--------~------~~~~~~ii 108 (182)
T 1shu_X 44 LSFIVFSSQATII-LPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG--------G------LKTSSIII 108 (182)
T ss_dssp EEEEEESSSEEEE-EEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHT--------G------GGSCEEEE
T ss_pred EEEEEeCCCceEE-ECCCCCHHHHHHHHHhcccCCCCCCchHHHHHHHHHHHHHhcc--------C------CCCCeEEE
Confidence 4567887765544 2444455544 555555668999999999999999997542 0 13568999
Q ss_pred EEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCHHH
Q psy11584 87 VITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRM 166 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~k~ 166 (573)
+||||.. ..+....+.- ..+..-+-.-++|+|-+ | ..+..-+..+++.|||..+...+...
T Consensus 109 liTDG~~---~~~~~~~~~~----------~~~~~~~~~i~i~~igv----g--~~~~~~L~~ia~~~~~~~~~~~~~~~ 169 (182)
T 1shu_X 109 ALTDGKL---DGLVPSYAEK----------EAKISRSLGASVYCVGV----L--DFEQAQLERIADSKEQVFPVKGGFQA 169 (182)
T ss_dssp EEECCCC---CTTHHHHHHH----------HHHHHHHTTCEEEEEEC----S--SCCHHHHHHHSSSGGGEEESSSTTHH
T ss_pred EECCCCc---CCCCchhHHH----------HHHHHHhCCCEEEEEeC----C--cCCHHHHHHHhCCCCceEEccCCHHH
Confidence 9999972 2222111100 00000122356787776 3 23456789999999885444448899
Q ss_pred HHHHHHHHHHhc
Q psy11584 167 LLQCIDSLVQKV 178 (573)
Q Consensus 167 L~qciesLvqkv 178 (573)
|...++.|++++
T Consensus 170 L~~~~~~i~~~i 181 (182)
T 1shu_X 170 LKGIINSILAQS 181 (182)
T ss_dssp HHHHHHHHHHTB
T ss_pred HHHHHHHHHhcc
Confidence 999999888754
No 4
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.30 E-value=0.00038 Score=75.69 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=95.5
Q ss_pred hhccccccccccccccccc----chHHHHHHhhccc-----cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccc
Q psy11584 10 LSSLFFITHASASYAGWKE----NLTTFMTELKNLQ-----CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFL 80 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke----n~~~F~~ELKnLq-----a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~l 80 (573)
++||+|.+.+.-+ +-... +...+.+.|++|+ +.|-|.++.||+.|+++|.... .+ .|.-+.-
T Consensus 284 v~lv~f~~~~~~~-~~l~~~~~~~~~~~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~--~~------~~~~~~~ 354 (741)
T 3hrz_D 284 YGLVTYATYPKIW-VKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD--DV------PPEGWNR 354 (741)
T ss_dssp EEEEEESSSEEEE-ECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC----C------CCTTGGG
T ss_pred EEEEEeccCCcee-EeecccCCcCHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhh--hc------cccchhc
Confidence 4678888765433 22222 6678999999999 8899999999999999985211 00 1111223
Q ss_pred cCcEEEEEecCCCccCCCCc-c----cccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhC
Q psy11584 81 EPAVIVVITDGGKLSNATGV-Q----EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTG 155 (573)
Q Consensus 81 EPavII~iTDG~~lt~~~Gv-~----~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTG 155 (573)
-+-+||+||||.. ..|. + +++. ....-.+..++.=+=.-++|+|-+.. ..+..-+..|.+.+|
T Consensus 355 ~~~~iillTDG~~---n~g~~p~~~~~~i~----~~~~~~~~a~~~~~~gi~i~~igvG~-----~~~~~~L~~ia~~~~ 422 (741)
T 3hrz_D 355 TRHVIILMTDGLH---NMGGDPITVIDEIR----DLLYIGKDRKNPREDYLDVYVFGVGP-----LVNQVNINALASKKD 422 (741)
T ss_dssp EEEEEEEEECSCC---CSSSCTHHHHHHHH----HHTTCSSCTTCCCGGGEEEEEEECSS-----SCCHHHHHHHSCCCT
T ss_pred cCeEEEEECCCcc---ccCCCchHHHHHHH----HHhhcccccccccccCeeEEEEeCCC-----cCCHHHHHHHhcCCC
Confidence 4679999999962 2221 1 1111 00001111122222345678877621 134567999999999
Q ss_pred Cc--eEEEcCHHHHHHHHHHHHHhcc
Q psy11584 156 GR--SYCVTSHRMLLQCIDSLVQKVQ 179 (573)
Q Consensus 156 Gr--sy~v~S~k~L~qciesLvqkvq 179 (573)
|. .|.+.+...|.+.++.|+.++.
T Consensus 423 g~~~~~~~~~~~~L~~~~~~l~~~~~ 448 (741)
T 3hrz_D 423 NEQHVFKVKDMENLEDVFYQMIDESQ 448 (741)
T ss_dssp TCCCEECBSSHHHHHHHHHHHHHHHS
T ss_pred CcceEEEeCCHHHHHHHHHHhhcccc
Confidence 95 9999999999999999997755
No 5
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.30 E-value=0.00063 Score=62.41 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=79.9
Q ss_pred hhcccccccccccc-c--ccccchHHHHHHhhcccc-----CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASY-A--GWKENLTTFMTELKNLQC-----TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VK-a--GWken~~~F~~ELKnLqa-----~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++|++|.+.+..+- . -...+...+.+.|.+|+. .|-|.++.||..|.+.|.-.. +..+..+.-.
T Consensus 56 v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~--------~~~~~~~~~~ 127 (223)
T 1q0p_A 56 YGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD--------DVPPEGWNRT 127 (223)
T ss_dssp EEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTT--------SSCCTTGGGC
T ss_pred EEEEEecCccceeeccccCCCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccc--------cccccccccC
Confidence 56788887765542 1 112245789999999985 589999999999999986321 0011123346
Q ss_pred CcEEEEEecCCCccCCCC--cccccc-c-CCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCC-
Q psy11584 82 PAVIVVITDGGKLSNATG--VQEDFN-L-PMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGG- 156 (573)
Q Consensus 82 PavII~iTDG~~lt~~~G--v~~el~-L-p~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGG- 156 (573)
+.+||+||||..-...+- ..+.+. + .... +...+ -+=.-++|+|-+.. ..+..-+..|++.|||
T Consensus 128 ~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~--~~~~~----~~~~i~i~~igvG~-----~~~~~~L~~iA~~~~G~ 196 (223)
T 1q0p_A 128 RHVIILMTDGLHNMGGDPITVIDEIRDLLYIGK--DRKNP----REDYLDVYVFGVGP-----LVNQVNINALASKKDNE 196 (223)
T ss_dssp EEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSC--BTTBC----CGGGEEEEEEECSS-----CCCHHHHHHHSCCCTTC
T ss_pred CeEEEEECCCCCCCCCChHHHHHHHHHHHhhhh--hhhhc----ccCCcEEEEEEecC-----cCCHHHHHHHhcCCCCC
Confidence 779999999973211110 011110 0 0000 00000 11123577777621 2345679999999999
Q ss_pred -ceEEEcCHHHHHHHHHHHHHh
Q psy11584 157 -RSYCVTSHRMLLQCIDSLVQK 177 (573)
Q Consensus 157 -rsy~v~S~k~L~qciesLvqk 177 (573)
..|.+.+...|.+.++.++.+
T Consensus 197 ~~~~~~~~~~~L~~~~~~i~~~ 218 (223)
T 1q0p_A 197 QHVFKVKDMENLEDVFYQMIDE 218 (223)
T ss_dssp CCEEETTC--------------
T ss_pred ceEEEcCCHHHHHHHHHHHhcc
Confidence 899999999998888877754
No 6
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.19 E-value=3.8e-05 Score=69.63 Aligned_cols=140 Identities=14% Similarity=0.206 Sum_probs=87.0
Q ss_pred hhccccccccccccccccc--chHHHHHHhhccc-cCCCchhHHHHHHHHH-HHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWKE--NLTTFMTELKNLQ-CTGMTLLGAALKHTFD-VLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke--n~~~F~~ELKnLq-a~glt~lg~AL~~AFd-lLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
++|++|.+.+..+ ..+.. +...+.+.|.+|. ..|-|.++.||..|.+ ++...+ | +| + -.+.+|
T Consensus 48 v~lv~f~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~--------~-~r-~--~~~~~i 114 (198)
T 1n3y_A 48 FSLMQFSNKFQTH-FTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASY--------G-AR-R--DAAKIL 114 (198)
T ss_dssp EEEEEESSSEEEE-ECHHHHHHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGG--------T-CC-T--TSEEEE
T ss_pred EEEEEeCCCccEE-EecCccCCHHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCccc--------C-CC-C--CCceEE
Confidence 4567777765433 12221 2245667777776 5789999999999994 444321 1 12 1 247899
Q ss_pred EEEecCCCccCCCCcc-cccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCce-EEEcC
Q psy11584 86 VVITDGGKLSNATGVQ-EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRS-YCVTS 163 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~-~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrs-y~v~S 163 (573)
|+||||..- .+.+. .+. .++.-+-.-++|+|.+..... ...+..-+..+++.|||+. |.+.+
T Consensus 115 illTDG~~~--~~~~~~~~~-------------~~~~~~~gi~i~~igvG~~~~-~~~~~~~L~~iA~~~~g~~~~~~~~ 178 (198)
T 1n3y_A 115 IVITDGKKE--GDSLDYKDV-------------IPMADAAGIIRYAIGVGLAFQ-NRNSWKELNDIASKPSQEHIFKVED 178 (198)
T ss_dssp EEEESSCCB--SCSSCHHHH-------------HHHHHHTTCEEEEEEESGGGG-SSTTHHHHHHHSCSSSGGGEEEESS
T ss_pred EEECCCCCC--CCcccHHHH-------------HHHHHHCCCEEEEEEcccccc-ccccHHHHHHHHcCCCcccEEEeCC
Confidence 999999731 11110 110 000112234688888833210 0124577999999999998 99999
Q ss_pred HHHHHHHHHHHHHhc
Q psy11584 164 HRMLLQCIDSLVQKV 178 (573)
Q Consensus 164 ~k~L~qciesLvqkv 178 (573)
...|...++.|.+++
T Consensus 179 ~~~l~~~~~~i~~~i 193 (198)
T 1n3y_A 179 FDALKDIQNQLKEKI 193 (198)
T ss_dssp GGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhe
Confidence 999998888888765
No 7
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.09 E-value=0.0008 Score=70.19 Aligned_cols=147 Identities=14% Similarity=0.216 Sum_probs=95.4
Q ss_pred hhccccccccccccc---ccccchHHHHHHhhccccC-----CCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASYA---GWKENLTTFMTELKNLQCT-----GMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VKa---GWken~~~F~~ELKnLqa~-----glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++||+|.+.+.-+-- .-..+.+.+.+.|++|+.. |-|.++.||+.|.++|...+-. .|.....|.-.
T Consensus 50 v~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~-----~~~~~~~~~~~ 124 (509)
T 2odp_A 50 VAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRL-----LGMETMAWQEI 124 (509)
T ss_dssp EEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHH-----HCTTSHHHHTE
T ss_pred EEEEEccCCCceeEeccCCCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccc-----ccccccccccc
Confidence 467888776654321 1223678899999999997 7799999999999999654322 22222233345
Q ss_pred CcEEEEEecCCCccCCCCc-c----cccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCC
Q psy11584 82 PAVIVVITDGGKLSNATGV-Q----EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGG 156 (573)
Q Consensus 82 PavII~iTDG~~lt~~~Gv-~----~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGG 156 (573)
+.+||+||||.. ..|. + +++. . +.+..-.+ +=.-++|+|.+..+ ..+..-|..|++.+||
T Consensus 125 ~~~iillTDG~~---~~~~~~~~~~~~~~----~-~~~~~~~~---~~~i~i~~iGvG~~----~~~~~~L~~iA~~~~G 189 (509)
T 2odp_A 125 RHAIILLTDGKS---NMGGSPKTAVDHIR----E-ILNINQKR---NDYLDIYAIGVGKL----DVDWRELNELGSKKDG 189 (509)
T ss_dssp EEEEEEESCSCC---CSSSCTHHHHHHHH----H-HTTCCSTT---GGGEEEEEEEESSS----CCCHHHHHHHSCCCTT
T ss_pred ceEEEEECCCCc---cCCCChhHHHHHHH----H-Hhhccccc---cCceEEEEEEcCCC----cccHHHHHhhccCCCC
Confidence 789999999962 2221 1 1111 0 00000000 11235788877221 2456789999999999
Q ss_pred c--eEEEcCHHHHHHHHHHHHH
Q psy11584 157 R--SYCVTSHRMLLQCIDSLVQ 176 (573)
Q Consensus 157 r--sy~v~S~k~L~qciesLvq 176 (573)
+ .|.+.+...|.+.++.++.
T Consensus 190 ~~~~~~~~~~~~l~~~~~~i~~ 211 (509)
T 2odp_A 190 ERHAFILQDTKALHQVFEHMLD 211 (509)
T ss_dssp CCCEEEESSHHHHHHHHHHHEE
T ss_pred ceeeEEecCHHHHHHHHHhhhc
Confidence 9 9999999999999988864
No 8
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.01 E-value=0.0014 Score=60.72 Aligned_cols=135 Identities=12% Similarity=0.143 Sum_probs=86.4
Q ss_pred hhcccccccccccccccc--cchHHHHHHhhccccCC--CchhHHHHHHHHHH-HhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWK--ENLTTFMTELKNLQCTG--MTLLGAALKHTFDV-LNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk--en~~~F~~ELKnLqa~g--lt~lg~AL~~AFdl-LN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
+++++|.+.+..+ .... .+...+.+.|++|+..| .|.++.||+.|.+- +. .| +| + --+-+
T Consensus 54 v~vv~fs~~~~~~-~~l~~~~~~~~~~~~i~~l~~~gg~~T~~~~aL~~a~~~~~~-----~~------~r-~--~~~~~ 118 (202)
T 1ijb_A 54 VAVVEYHDGSHAY-IGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFS-----KI------DR-P--EASRI 118 (202)
T ss_dssp EEEEEESSSEEEE-ECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHHHHTSS-----SC------SC-T--TSEEE
T ss_pred EEEEEECCCceEE-EecCCCCCHHHHHHHHHhCcCCCCCcCcHHHHHHHHHHHHhc-----cC------CC-C--CCCeE
Confidence 4667887765432 2222 45778999999999865 49999999999753 32 11 12 1 24679
Q ss_pred EEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhH-hCCceEEEcC
Q psy11584 85 IVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEV-TGGRSYCVTS 163 (573)
Q Consensus 85 II~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEv-TGGrsy~v~S 163 (573)
||+||||.. ..+..+++.-. ..++- +-.-++|+|-+.. ..+..-+..|+.. +||+.|.+.+
T Consensus 119 iillTDG~~---~~~~~~~~~~~------a~~l~----~~gi~i~~igvG~-----~~~~~~L~~iA~~~~~~~~~~~~~ 180 (202)
T 1ijb_A 119 ALLLMASQE---PQRMSRNFVRY------VQGLK----KKKVIVIPVGIGP-----HANLKQIRLIEKQAPENKAFVLSS 180 (202)
T ss_dssp EEEEECCCC---CGGGCTTHHHH------HHHHH----HTTEEEEEEEEST-----TSCHHHHHHHHHHCTTCCCEEESS
T ss_pred EEEEccCCC---CccchHHHHHH------HHHHH----HCCCEEEEEecCC-----cCCHHHHHHHhCCCCcccEEEeCC
Confidence 999999973 22211111000 00011 1134688887722 1344678889885 6899999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11584 164 HRMLLQCIDSLVQK 177 (573)
Q Consensus 164 ~k~L~qciesLvqk 177 (573)
...|.+.++.|+++
T Consensus 181 ~~~L~~~~~~i~~~ 194 (202)
T 1ijb_A 181 VDELEQQRDEIVSY 194 (202)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988865
No 9
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=96.72 E-value=0.002 Score=66.70 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=91.6
Q ss_pred hhcccccccccccc-cccc--cchHHHHHHhhcccc-----CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASY-AGWK--ENLTTFMTELKNLQC-----TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VK-aGWk--en~~~F~~ELKnLqa-----~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++|++|.+.+..+- ..+- .+...+.+.|.+|+. .|-|.++.||..|.++|....- .. |..+.-.
T Consensus 42 v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~-----~~---~~~~~~~ 113 (497)
T 1rrk_A 42 YGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD-----VP---PEGWNRT 113 (497)
T ss_dssp EEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC--------------CGGGC
T ss_pred EEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhc-----cc---ccccccc
Confidence 46788886655432 2222 456788899999985 4689999999999999832110 11 1122335
Q ss_pred CcEEEEEecCCCccCCCCc-c----cccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCC
Q psy11584 82 PAVIVVITDGGKLSNATGV-Q----EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGG 156 (573)
Q Consensus 82 PavII~iTDG~~lt~~~Gv-~----~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGG 156 (573)
+.+||+||||.. ..|. + +++. ....-.+..++.-+=.-++|+|.+.. ..|..-+..|++.|||
T Consensus 114 ~~~iillTDG~~---~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~v~~igvG~-----~~~~~~L~~iA~~~~g 181 (497)
T 1rrk_A 114 RHVIILMTDGLH---NMGGDPITVIDEIR----DLLYIGKDRKNPREDYLDVYVFGVGP-----LVNQVNINALASKKDN 181 (497)
T ss_dssp EEEEEEEECSCC---CSSSCTHHHHHHHH----HHTTCSSCC-CCCGGGEEEEEEECSS-----SCCHHHHHHHSCCCTT
T ss_pred ceEEEEEeCCCc---ccCCChhHHHHHHH----HHhhhhcccccchhcCeeEEEecCCC-----ccCHHHHHHHhcCCCC
Confidence 689999999962 2221 1 1110 00000011111111134678876621 2345779999999999
Q ss_pred --ceEEEcCHHHHHHHHHHHHHhcc
Q psy11584 157 --RSYCVTSHRMLLQCIDSLVQKVQ 179 (573)
Q Consensus 157 --rsy~v~S~k~L~qciesLvqkvq 179 (573)
+.|.+.+...|.+.++.++.+.+
T Consensus 182 ~~~~~~~~~~~~l~~~~~~~i~~~~ 206 (497)
T 1rrk_A 182 EQHVCKVKDMECLEDVFYQMIDESQ 206 (497)
T ss_dssp CCCEEETTCHHHHHHHHHHHSCGGG
T ss_pred cceEEEeCCHHHHhhhhhhcccCCC
Confidence 99999999999998888876544
No 10
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.67 E-value=0.0042 Score=57.25 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=85.1
Q ss_pred hhccccccccccccccccc--chHHHHHHhhccccCC--CchhHHHHHHHHHHH-hhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWKE--NLTTFMTELKNLQCTG--MTLLGAALKHTFDVL-NMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke--n~~~F~~ELKnLqa~g--lt~lg~AL~~AFdlL-N~nRlqsGID~yG~GR~P~~lEPav 84 (573)
++|++|.+.+.-+ ....+ +...+.+.+++|+..| -|.++.||..|.+.| +.. .| +| + --|-+
T Consensus 62 v~vv~fs~~~~~~-~~l~~~~~~~~~~~~i~~l~~~gg~~T~~~~aL~~a~~~l~~~~---~g------~r-~--~~~~~ 128 (199)
T 3zqk_A 62 VTVLQYSYMVTVE-YPFSEAQSKGDILQRLREIRYQGGNRTNTGLALRYLSDHSFLVS---QG------DR-E--QAPNL 128 (199)
T ss_dssp EEEEEESSSEEEE-ECTTSCCCHHHHHHHHHHCCCCCCSCCCHHHHHHHCCCCCTCGG---GT------CC-T--TSCEE
T ss_pred EEEEEECCcccEE-EecCCcCCHHHHHHHHHhCcCCCCCcChHHHHHHHHHHHhhCcc---cC------CC-C--CCCeE
Confidence 4567777655433 23333 6778999999998765 499999999998753 211 11 22 1 24789
Q ss_pred EEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcCH
Q psy11584 85 IVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSH 164 (573)
Q Consensus 85 II~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S~ 164 (573)
||+||||. +...+.+ + .-.-++|+|-+.. ..|..-|..|.. +|+.|.+.+.
T Consensus 129 iillTDG~---~~d~v~~--------------~-----~~~v~v~~iGiG~-----~~~~~~L~~iA~--~~~~~~~~~~ 179 (199)
T 3zqk_A 129 VYMVTGNP---ASDEIKR--------------L-----PGDIQVVPIGVGP-----NANVQELERIGW--PNAPILIQDF 179 (199)
T ss_dssp EEEEECSC---CSSCCCC--------------C-----CTTEEEEEEEEST-----TCCHHHHHHHHT--TSCCEEESCT
T ss_pred EEEEeCCC---CchHHHH--------------H-----hCCCEEEEEEcCC-----CCCHHHHHHHhC--CCceEEeCCH
Confidence 99999996 2221110 0 1346788888721 234567888875 7888999999
Q ss_pred HHHHHHHHHHHHh
Q psy11584 165 RMLLQCIDSLVQK 177 (573)
Q Consensus 165 k~L~qciesLvqk 177 (573)
..|...++.|+.+
T Consensus 180 ~~L~~~~~~l~~~ 192 (199)
T 3zqk_A 180 ETLPREAPDLVLQ 192 (199)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999855
No 11
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=96.64 E-value=0.00045 Score=63.40 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=88.6
Q ss_pred hhcccccccccccccccc--cchHHHHHHhhccccC-C-CchhHHHHHHHHHH-HhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWK--ENLTTFMTELKNLQCT-G-MTLLGAALKHTFDV-LNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk--en~~~F~~ELKnLqa~-g-lt~lg~AL~~AFdl-LN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
++|++|.+.+.-+ ..+. .+...+.+.|.+|+.. | -|.++.||..|.+. ++.. .| .| | -.+.+
T Consensus 45 vglv~f~~~~~~~-~~l~~~~~~~~~~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~---~g------~r-~--~~~~~ 111 (200)
T 1v7p_C 45 VGLIQYANNPRVV-FNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAA---SG------GR-R--SATKV 111 (200)
T ss_dssp EEEEEESSSEEEE-ECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGG---GT------CC-T--TSEEE
T ss_pred EEEEEECCCceEE-EeCCCcCCHHHHHHHHHhhhccCCCCCcHHHHHHHHHHhhcccc---cC------CC-C--CCCeE
Confidence 4678887765432 2333 3667899999999875 5 69999999999985 4321 11 12 1 34679
Q ss_pred EEEEecCCCccCCCCcc-cccccCCCCCCCCCCCCCCCccccceeeEEEEeec-CCcccCC----CchHHHHHhHhCCce
Q psy11584 85 IVVITDGGKLSNATGVQ-EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRD-MGVVACD----NSPIDAMCEVTGGRS 158 (573)
Q Consensus 85 II~iTDG~~lt~~~Gv~-~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~-~g~vp~d----~spI~amCEvTGGrs 158 (573)
||+||||.. ..+.. .+.. .++ =+-.-++|+|-+... .|. ..+ ..-+..++..|||+.
T Consensus 112 ivllTDG~~---~~~~~~~~~~---------~~~----~~~gi~i~~igvg~~~~~~-~~~~~~~~~~L~~iA~~~~g~~ 174 (200)
T 1v7p_C 112 MVVVTDGES---HDGSMLKAVI---------DQC----NHDNILRFGIAVLGYLNRN-ALDTKNLIKEIKAIASIPTERY 174 (200)
T ss_dssp EEEEESSCC---SCGGGHHHHH---------HHH----HHTTEEEEEEEECHHHHHT-TCCCHHHHHHHHHHSCSSHHHH
T ss_pred EEEEccCCC---CCcccHHHHH---------HHH----HHCCCEEEEEEeccccccc-ccchhhHHHHHHHHhCCccHhc
Confidence 999999973 22221 1100 000 012347888888210 010 112 244889999999986
Q ss_pred -EEEcCHHHHHHHHHHHHHhc
Q psy11584 159 -YCVTSHRMLLQCIDSLVQKV 178 (573)
Q Consensus 159 -y~v~S~k~L~qciesLvqkv 178 (573)
|.+.+...|.+.++.|.+++
T Consensus 175 ~~~~~~~~~l~~i~~~i~~~i 195 (200)
T 1v7p_C 175 FFNVSDEAALLEKAGTLGEQI 195 (200)
T ss_dssp EEEESSSGGGHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHhhh
Confidence 78999999999998888764
No 12
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=96.63 E-value=0.00097 Score=62.33 Aligned_cols=141 Identities=12% Similarity=0.172 Sum_probs=87.5
Q ss_pred hhcccccccccccccccc--cchHHHHHHhhccccC-C-CchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWK--ENLTTFMTELKNLQCT-G-MTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk--en~~~F~~ELKnLqa~-g-lt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
++|++|.+.+.-+ ..+. .+...+.+.|++|+.. | .|.++.||..|.+.|-... . | .| + -.+.+|
T Consensus 61 v~lv~F~~~~~~~-~~l~~~~~~~~~~~~i~~l~~~gG~~T~~~~aL~~a~~~l~~~~--~-----~-~~-~--~~~~~i 128 (223)
T 2b2x_A 61 VGIVQYGENVTHE-FNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEA--R-----G-AR-R--GVKKVM 128 (223)
T ss_dssp EEEEEESSSEEEE-ECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGG--G-----T-CC-T--TSEEEE
T ss_pred EEEEEeCCCccEE-EecCCCCCHHHHHHHHHhhhccCCCCccHHHHHHHHHHHhcCcc--c-----C-CC-C--CCCeEE
Confidence 4678887665433 2222 3567889999999875 4 5999999999998742211 1 1 11 1 257799
Q ss_pred EEEecCCCccCCCCc-ccccccCCCCCCCCCCCCCCCccccceeeEEEEeec--CCcccC--CCchHHHHHhH-hCCceE
Q psy11584 86 VVITDGGKLSNATGV-QEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRD--MGVVAC--DNSPIDAMCEV-TGGRSY 159 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv-~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~--~g~vp~--d~spI~amCEv-TGGrsy 159 (573)
|+||||. ...+. ..+.. .++- +=.-++|+|.+..+ .|.... ...-+..|++. |||+.|
T Consensus 129 illTDG~---~~~~~~~~~~~---------~~~~----~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~ 192 (223)
T 2b2x_A 129 VIVTDGE---SHDNYRLKQVI---------QDCE----DENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFF 192 (223)
T ss_dssp EEEESSC---CTTGGGHHHHH---------HHHH----TTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEE
T ss_pred EEEcCCC---CCCCccHHHHH---------HHHH----HCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEE
Confidence 9999997 22332 11100 0010 11347888888321 111000 02457788888 999999
Q ss_pred EEcCHHHHHHHHHHHHHhc
Q psy11584 160 CVTSHRMLLQCIDSLVQKV 178 (573)
Q Consensus 160 ~v~S~k~L~qciesLvqkv 178 (573)
.+.+...|.+.++.|.+++
T Consensus 193 ~~~~~~~L~~i~~~i~~~i 211 (223)
T 2b2x_A 193 NVSDELALVTIVKALGERI 211 (223)
T ss_dssp EESSTTGGGGGHHHHHTTT
T ss_pred EeCCHHHHHHHHHHHHHhh
Confidence 9999999998888887665
No 13
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=96.60 E-value=0.00054 Score=61.24 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=83.6
Q ss_pred hhcccccccccccccccccchHHHHHHhhccc---cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQ---CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLq---a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++|++|.+.+.-+ ....++...+.+.|.+|+ +.|-|.++.||..|.+.|....- .|+. .+.+||
T Consensus 45 v~lv~f~~~~~~~-~~l~~~~~~~~~~i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~--------~~~~----~~~~ii 111 (185)
T 3n2n_F 45 MSFIVFSTRGTTL-MKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENR--------QGYR----TASVII 111 (185)
T ss_dssp EEEEEESSSEEEE-EEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHHT--------TCBC----EEEEEE
T ss_pred EEEEEEecCceEE-eccCCCHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHhhccc--------cCCC----CCcEEE
Confidence 4577887766544 344456666655555554 68999999999999997743220 0111 478999
Q ss_pred EEecCCCccCCCCcc---cccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEcC
Q psy11584 87 VITDGGKLSNATGVQ---EDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTS 163 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~---~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~S 163 (573)
+||||.. ..+.. .+.. .++. +-.-++|+|-+ | ..+..-+..++. ++|+.|.+.+
T Consensus 112 llTDG~~---~~~~~~~~~~~~---------~~~~----~~gi~i~~igv----g--~~~~~~L~~iA~-~~~~~~~~~~ 168 (185)
T 3n2n_F 112 ALTDGEL---HEDLFFYSEREA---------NRSR----DLGAIVYAVGV----K--DFNETQLARIAD-SKDHVFPVND 168 (185)
T ss_dssp EEECCCC---CHHHHHHHHHHH---------HHHH----HTTEEEEEEEC----S--SCCHHHHTTTSS-SGGGEEEHHH
T ss_pred EEcCCCC---CCCcccchHHHH---------HHHH----HCCCEEEEEEe----c--cCCHHHHHHHhC-CCCCeEEecc
Confidence 9999973 22221 1100 0000 01246777776 2 234455666664 4688999997
Q ss_pred -HHHHHHHHHHHHHhc
Q psy11584 164 -HRMLLQCIDSLVQKV 178 (573)
Q Consensus 164 -~k~L~qciesLvqkv 178 (573)
...|...++.|+.++
T Consensus 169 ~~~~L~~~~~~i~~~i 184 (185)
T 3n2n_F 169 GFQALQGIIHSILKKS 184 (185)
T ss_dssp HHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHhc
Confidence 999999999988764
No 14
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=96.56 E-value=0.0022 Score=57.82 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=54.4
Q ss_pred hhcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEe
Q psy11584 10 LSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVIT 89 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iT 89 (573)
++|++|.+....+-..+..+...+.+.|++|++.|-|.++.||..|+++|...+- . -.+.+||+||
T Consensus 44 v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~T~~~~al~~a~~~l~~~~~--------~------~~~~~ivliT 109 (189)
T 2x31_A 44 VSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQARS--------R------GMTPTIALLT 109 (189)
T ss_dssp CCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCBCCCCHHHHHHHHHHHHTCTT--------T------CSSEEEEECC
T ss_pred EEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhccC--------C------CCceEEEEEC
Confidence 4678888644455566667888999999999999999999999999999875321 0 1456999999
Q ss_pred cCC
Q psy11584 90 DGG 92 (573)
Q Consensus 90 DG~ 92 (573)
||.
T Consensus 110 DG~ 112 (189)
T 2x31_A 110 DGR 112 (189)
T ss_dssp BSC
T ss_pred CCC
Confidence 997
No 15
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=96.55 E-value=0.00054 Score=62.28 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=86.5
Q ss_pred hhccccccccccccccccc--chHHHHHHhhcccc-CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWKE--NLTTFMTELKNLQC-TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke--n~~~F~~ELKnLqa-~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++|++|.+.+..+ ..+.. +...+.+.+.+|+. .|-|.++.||..|.+.|-..+ .| +| | --+.+||
T Consensus 44 v~vv~f~~~~~~~-~~l~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~--~~------~r-~--~~~~~ii 111 (194)
T 1mf7_A 44 FSLMQYSEEFRIH-FTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNIT--NG------AR-K--NAFKILV 111 (194)
T ss_dssp EEEEEESSSEEEE-ECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGG--GT------CC-T--TSEEEEE
T ss_pred EEEEEecCCceEE-EecCCcCCHHHHHHHHHhCcCCCCCchHHHHHHHHHHHhcCcc--cC------CC-C--CCCeEEE
Confidence 4567777665432 23332 34567888999985 899999999999997442211 11 22 1 2478999
Q ss_pred EEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHh-CCceEEEcCHH
Q psy11584 87 VITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVT-GGRSYCVTSHR 165 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvT-GGrsy~v~S~k 165 (573)
+||||..- .+... + .+..++.-+-.-++|+|-+..+.. .+.+..-+..|+..+ ||+.|.+.+..
T Consensus 112 llTDG~~~--~d~~~----~--------~~~~~~~~~~gi~v~~igvG~~~~-~~~~~~~L~~iA~~~~~~~~~~~~~~~ 176 (194)
T 1mf7_A 112 VITDGEKF--GDPLG----Y--------EDVIPEADREGVIRYVIGVGDAFR-SEKSRQELNTIASKPPRDHVFQVNNFE 176 (194)
T ss_dssp EEESSCCB--SCSSC----G--------GGTHHHHHHTTEEEEEEEESGGGC-SHHHHHHHHHHSCSSHHHHEEEESSGG
T ss_pred EEcCCCCC--CCchh----h--------HHHHHHHHHCCCEEEEEEeccccc-ccccHHHHHHHhCCCCcccEEEeCCHH
Confidence 99999732 01110 0 000111112235688888732100 001135678888875 58899999999
Q ss_pred HHHHHHHHHHHhc
Q psy11584 166 MLLQCIDSLVQKV 178 (573)
Q Consensus 166 ~L~qciesLvqkv 178 (573)
.|...++.|.+++
T Consensus 177 ~l~~~~~~i~~~i 189 (194)
T 1mf7_A 177 ALKTIQNQLREKI 189 (194)
T ss_dssp GGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888888765
No 16
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=96.16 E-value=0.0046 Score=60.09 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=85.4
Q ss_pred hhcccccccccccccccc----cchHHHHHHhhcccc----CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASYAGWK----ENLTTFMTELKNLQC----TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk----en~~~F~~ELKnLqa----~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++|++|.+.+..+- ... .+...+.+.|.+|++ .|-|.++.||+.|.+.|... + +|. -.
T Consensus 63 vglv~Fs~~~~~~~-~l~~~~~~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~----~------~r~---~~ 128 (281)
T 4hqf_A 63 LYASVFSNNAREII-RLHSDASKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDR----I------NRE---NA 128 (281)
T ss_dssp EEEEEEETTEEEEE-EECSSCSSCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTS----C------CCT---TC
T ss_pred EEEEEcCCCceEEE-EccccCccCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhc----c------CCC---CC
Confidence 46788877664331 122 145678788888864 89999999999998877531 1 222 23
Q ss_pred CcEEEEEecCCCccCCCCcccccc-cCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhH--hCC--
Q psy11584 82 PAVIVVITDGGKLSNATGVQEDFN-LPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEV--TGG-- 156 (573)
Q Consensus 82 PavII~iTDG~~lt~~~Gv~~el~-Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEv--TGG-- 156 (573)
+.+||+||||..- ....+.+... |- +=.-++|+|-+.. ..+..-+..|... |||
T Consensus 129 ~~~iillTDG~~~-d~~~~~~~~~~l~---------------~~gv~i~~igiG~-----~~~~~~L~~iA~~~~~~g~~ 187 (281)
T 4hqf_A 129 NQLVVILTDGIPD-SIQDSLKESRKLS---------------DRGVKIAVFGIGQ-----GINVAFNRFLVGCHPSDGKC 187 (281)
T ss_dssp EEEEEEEESSCCS-CHHHHHHHHHHHH---------------HTTCEEEEEEESS-----SCCHHHHHHHTTSCSSSSCC
T ss_pred CEEEEEEecCCCC-CcHHHHHHHHHHH---------------HCCCEEEEEeCCC-----ccCHHHHHhhhCCCCCCCCC
Confidence 8899999999621 0001111110 10 0114678887722 1334557777655 677
Q ss_pred ceEEEcCHHHHHHHHHHHHHhcc
Q psy11584 157 RSYCVTSHRMLLQCIDSLVQKVQ 179 (573)
Q Consensus 157 rsy~v~S~k~L~qciesLvqkvq 179 (573)
..|.+.+...|...++.+++++-
T Consensus 188 ~~~~~~~~~~L~~~~~~l~~~iC 210 (281)
T 4hqf_A 188 NLYADSAWENVKNVIGPFMKAVC 210 (281)
T ss_dssp TTEEEECGGGHHHHHHHHHHHHH
T ss_pred ceEEecchhhhhcccCCcccccC
Confidence 89999999999988888876543
No 17
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=95.99 E-value=0.0079 Score=58.33 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=85.6
Q ss_pred hhccccccccccccccccc----chHHHHHHhhcc----ccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCcccc
Q psy11584 10 LSSLFFITHASASYAGWKE----NLTTFMTELKNL----QCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLE 81 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke----n~~~F~~ELKnL----qa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lE 81 (573)
++|++|.+.+.-+ +...+ +...+.+.|++| .+.|-|.++.||+.|.++|... | +|. -.
T Consensus 60 vglv~Fs~~~~~~-~~l~~~~~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~---------~-~r~---~~ 125 (266)
T 4hqo_A 60 LYMNLFGSYTTEL-IRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDR---------V-NRE---KA 125 (266)
T ss_dssp EEEEEESSSEEEE-ECTTSHHHHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTT---------C-SCT---TS
T ss_pred EEEEEecCCcceE-EecCCCCccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhc---------c-ccC---CC
Confidence 3567777764432 22222 356778888888 5789999999999998887542 1 231 24
Q ss_pred CcEEEEEecCCCccCCCCcccccc-cCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHh--CC--
Q psy11584 82 PAVIVVITDGGKLSNATGVQEDFN-LPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVT--GG-- 156 (573)
Q Consensus 82 PavII~iTDG~~lt~~~Gv~~el~-Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvT--GG-- 156 (573)
+.+||+||||..- ....+.+... +- +=.-++|+|-+ |. ..+..-+..|.... ||
T Consensus 126 ~~~iIllTDG~~~-d~~~~~~~a~~l~---------------~~gi~i~~iGi----G~-~~~~~~L~~iA~~~~~~g~~ 184 (266)
T 4hqo_A 126 IQLVILMTDGVPN-SKYRALEVANKLK---------------QRNVRLAVIGI----GQ-GINHQFNRLIAGCRPREPNC 184 (266)
T ss_dssp EEEEEEEECSCCS-CHHHHHHHHHHHH---------------HTTCEEEEEEC----SS-SCCHHHHHHHHTCCTTCSSC
T ss_pred CeEEEEEccCCCC-CchHHHHHHHHHH---------------HCCCEEEEEec----Cc-ccCHHHHHHhhCCCCCCCCC
Confidence 7899999999731 1011111111 10 00146777766 21 12334457777664 43
Q ss_pred ceEEEcCHHHHHHHHHHHHHhcccc
Q psy11584 157 RSYCVTSHRMLLQCIDSLVQKVQSG 181 (573)
Q Consensus 157 rsy~v~S~k~L~qciesLvqkvq~g 181 (573)
+.|.+.+...|.+.++.|++++-..
T Consensus 185 ~~~~~~d~~~L~~i~~~l~~~iC~~ 209 (266)
T 4hqo_A 185 KFYSYADWNEAVALIKPFIAKVCTE 209 (266)
T ss_dssp TTEECSCHHHHHHHHHHHHCCCEEE
T ss_pred CeEEecCHHHHHHHHHHHHhhhccc
Confidence 9999999999998888888766543
No 18
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=95.93 E-value=0.0017 Score=60.21 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=88.3
Q ss_pred hhcccccccccccccccc--cchHHHHHHhhccccC-C-CchhHHHHHHHHHHH-hhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWK--ENLTTFMTELKNLQCT-G-MTLLGAALKHTFDVL-NMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWk--en~~~F~~ELKnLqa~-g-lt~lg~AL~~AFdlL-N~nRlqsGID~yG~GR~P~~lEPav 84 (573)
++|++|.+.+..+ ..+. .+...+.+.|.+|... | .|.++.||+.|.+.| ...+ | .| + -.+.+
T Consensus 46 v~lv~F~~~~~~~-~~l~~~~~~~~~~~~i~~l~~~~G~~T~~~~aL~~a~~~l~~~~~--------~-~r-~--~~~~~ 112 (213)
T 1pt6_A 46 VGIVQYGENVTHE-FNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEAR--------G-AR-R--GVKKV 112 (213)
T ss_dssp EEEEEESSSEEEE-ECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGG--------T-CC-T--TCEEE
T ss_pred EEEEEeCCCccEE-EeccccCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHhcCccc--------C-CC-C--CCCeE
Confidence 4567887765433 2222 3567889999999875 4 589999999999864 3211 1 12 1 35789
Q ss_pred EEEEecCCCccCCCCc-ccccccCCCCCCCCCCCCCCCccccceeeEEEEeec--CCcccC--CCchHHHHHhH-hCCce
Q psy11584 85 IVVITDGGKLSNATGV-QEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRD--MGVVAC--DNSPIDAMCEV-TGGRS 158 (573)
Q Consensus 85 II~iTDG~~lt~~~Gv-~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~--~g~vp~--d~spI~amCEv-TGGrs 158 (573)
||+||||. ...+. ..+.. .++- +-.-++|+|.+... .|.+.. ...-+..+++. |||+.
T Consensus 113 iillTDG~---~~~~~~~~~~~---------~~~~----~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~ 176 (213)
T 1pt6_A 113 MVIVTDGE---SHDNHRLKKVI---------QDCE----DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHF 176 (213)
T ss_dssp EEEEESSC---CSCSHHHHHHH---------HHHH----HTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHE
T ss_pred EEEEcCCC---CCCCccHHHHH---------HHHH----HCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcE
Confidence 99999997 23332 11100 0010 11347888888321 111110 02457788888 89999
Q ss_pred EEEcCHHHHHHHHHHHHHhcc
Q psy11584 159 YCVTSHRMLLQCIDSLVQKVQ 179 (573)
Q Consensus 159 y~v~S~k~L~qciesLvqkvq 179 (573)
|.+.+...|.+.++.|.+++-
T Consensus 177 ~~~~~~~~l~~i~~~l~~~i~ 197 (213)
T 1pt6_A 177 FNVSDELALVTIVKTLGERIF 197 (213)
T ss_dssp EEESSGGGGGGGHHHHHHHHT
T ss_pred EEeCCHHHHHHHHHHHHHhhe
Confidence 999999999988888877654
No 19
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=95.52 E-value=0.02 Score=51.65 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred hhccccccccccccccccc----chHHHHHHhhccc-cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcE
Q psy11584 10 LSSLFFITHASASYAGWKE----NLTTFMTELKNLQ-CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAV 84 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke----n~~~F~~ELKnLq-a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPav 84 (573)
++|++|.+.+..+ ..+.+ +...+.+.|.+|+ ..|-|.++.||..|.+.|...+ .| +|. -.+.+
T Consensus 58 v~vv~F~~~~~~~-~~l~~~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~-------~g-~r~---~~~~~ 125 (178)
T 2xgg_A 58 NAVVTYSTDVHLQ-WDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGS-------RP-GRE---HVPKL 125 (178)
T ss_dssp EEEEEESSSEEEE-ECTTSGGGSCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC-------CT-TCT---TSCEE
T ss_pred EEEEEeCCceEEE-EeCCCCCccCHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcCcc-------cC-CCC---CCCEE
Confidence 4567777765432 22332 6788999999998 6799999999999999874321 11 121 35789
Q ss_pred EEEEecCC
Q psy11584 85 IVVITDGG 92 (573)
Q Consensus 85 II~iTDG~ 92 (573)
||+||||.
T Consensus 126 iillTDG~ 133 (178)
T 2xgg_A 126 VIGMTDGE 133 (178)
T ss_dssp EEEEESSC
T ss_pred EEEEcCCC
Confidence 99999997
No 20
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=95.06 E-value=0.0095 Score=54.01 Aligned_cols=134 Identities=14% Similarity=0.162 Sum_probs=78.1
Q ss_pred hhcccccccccccccccccc--hHHHHHHhhcccc-CCCchhHHHHHHHHH-HHhhhhcccCCCCCCCCcCCccccCcEE
Q psy11584 10 LSSLFFITHASASYAGWKEN--LTTFMTELKNLQC-TGMTLLGAALKHTFD-VLNMNRMQSGIDTYGQGRSPFFLEPAVI 85 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWken--~~~F~~ELKnLqa-~glt~lg~AL~~AFd-lLN~nRlqsGID~yG~GR~P~~lEPavI 85 (573)
+++++|.+.+.-+ ..+.+. ...+.+.+..++. .|-|.++.||+.|.+ ++... .| +| | --|-+|
T Consensus 41 v~vv~fs~~~~~~-~~l~~~~~~~~~~~~~~~i~~~~g~T~~~~aL~~a~~~~~~~~---~g------~r-~--~~~~~i 107 (179)
T 1mjn_A 41 FAAVQFSTSYKTE-FDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREE---LG------AR-P--DATKVL 107 (179)
T ss_dssp EEEEEESSSEEEE-ECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGG---GT------CC-T--TSEEEE
T ss_pred EEEEEECCceeEE-EcCcccCCHHHHHHHHHhcccCCCCChHHHHHHHHHHHhcccc---cC------CC-C--CCCeEE
Confidence 4567776655432 233221 1123334444443 488999999999986 44321 11 12 1 247899
Q ss_pred EEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCc-eEEEcCH
Q psy11584 86 VVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGR-SYCVTSH 164 (573)
Q Consensus 86 I~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGr-sy~v~S~ 164 (573)
|+||||. +..++. .+ + .-.-++|+|.+..... ...+..-+..|+..+||+ .|.+.+.
T Consensus 108 illTDG~---~~~~~~----~~-----------~---~~~i~i~~igvG~~~~-~~~~~~~L~~iA~~~~~~~~~~~~~~ 165 (179)
T 1mjn_A 108 IIITDGE---ATDSGN----ID-----------A---AKDIIRYIIGIGKHFQ-TKESQETLHKFASKPASEFVKILDTF 165 (179)
T ss_dssp EEEESSC---CSSCSC----CG-----------G---GTTSEEEEEEESGGGC-SHHHHHTTGGGSCSCHHHHEEEESSG
T ss_pred EEEcCCC---CCCCcc----hH-----------H---HCCCEEEEEEcccccc-ccccHHHHHHHhCCccHhcEEEeCCH
Confidence 9999997 233321 11 0 1245789988832100 000114577888888875 5899999
Q ss_pred HHHHHHHHHHHHhc
Q psy11584 165 RMLLQCIDSLVQKV 178 (573)
Q Consensus 165 k~L~qciesLvqkv 178 (573)
..|.+..+.|.+|+
T Consensus 166 ~~L~~i~~~i~~~i 179 (179)
T 1mjn_A 166 EKLKDLCTELQKKI 179 (179)
T ss_dssp GGSCCHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99988888887664
No 21
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=93.60 E-value=0.067 Score=53.27 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=46.5
Q ss_pred CcEEEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEE
Q psy11584 82 PAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCV 161 (573)
Q Consensus 82 PavII~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v 161 (573)
.-+||+||||. +..|. +-.. ..++ .-.-.=|+|+|-+......-..+..-|+.+.+.|||++|.+
T Consensus 10 ~k~iillTDG~---~~~g~-~p~~--------aa~~---a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a 74 (242)
T 3rag_A 10 IRQILVITDGC---SNIGP-DPVE--------AARR---AHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIV 74 (242)
T ss_dssp EEEEEEEESSC---CCSSS-CHHH--------HHHH---HHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEE
T ss_pred ccEEEEEccCC---CCCCC-CHHH--------HHHH---HHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEe
Confidence 45899999997 33332 1111 0111 11223568998882111000124567999999999999998
Q ss_pred cCHHHHHHHHHHHHHh
Q psy11584 162 TSHRMLLQCIDSLVQK 177 (573)
Q Consensus 162 ~S~k~L~qciesLvqk 177 (573)
.+ .+|.|.+..+.+|
T Consensus 75 ~~-~~l~~~~~~~t~~ 89 (242)
T 3rag_A 75 QP-ADISATAQMMTHQ 89 (242)
T ss_dssp CG-GGHHHHHHHHHHH
T ss_pred eH-HHHHHHHHHHHHH
Confidence 65 6666655555433
No 22
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=92.93 E-value=0.15 Score=45.97 Aligned_cols=135 Identities=14% Similarity=0.204 Sum_probs=82.3
Q ss_pred hhccccccccccccccc--ccchHHHHHHhhcccc-CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGW--KENLTTFMTELKNLQC-TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGW--ken~~~F~~ELKnLqa-~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++|++|.+.+.-+ ..+ -.+...+.+.|.+|+. .|-|.++.||..|.+.|.... .|..| -.+.+||
T Consensus 46 v~lv~f~~~~~~~-~~l~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~---------~g~r~--~~~~~vi 113 (189)
T 1atz_A 46 VSVLQYGSITTID-VPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEM---------HGARP--GASKAVV 113 (189)
T ss_dssp EEEEEESSSEEEE-ECTTCCCCHHHHHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCC---------TTCCT--TSEEEEE
T ss_pred EEEEEECCcceEE-EecCCCCCHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHhccc---------cCCCC--CCCcEEE
Confidence 4578887655432 344 3467888999999985 689999999999999875321 12222 2366788
Q ss_pred EEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCc-eEEEcCHH
Q psy11584 87 VITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGR-SYCVTSHR 165 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGr-sy~v~S~k 165 (573)
+||||+. .+.+.+... ++ =+-.-++|+|-+.. ..+..-+..+...++|. .|.+.+..
T Consensus 114 vltdg~~---~~~~~~~~~----------~~----~~~gi~v~~igvG~-----~~~~~~L~~iA~~~~~~~~~~~~~~~ 171 (189)
T 1atz_A 114 ILVTDVS---VDSVDAAAD----------AA----RSNRVTVFPIGIGD-----RYDAAQLRILAGPAGDSNVVKLQRIE 171 (189)
T ss_dssp EEECSCC---SSCCHHHHH----------HH----HHTTEEEEEEEESS-----SSCHHHHHHHTGGGGGGGCEEESSTT
T ss_pred EEeCCCC---CchHHHHHH----------HH----HHCCCEEEEEEcCC-----cCCHHHHHHHHCCCcccCEEEecChh
Confidence 8999973 122211110 00 01235788887722 13346788998888875 46676544
Q ss_pred HHH---HHHHHHHHhc
Q psy11584 166 MLL---QCIDSLVQKV 178 (573)
Q Consensus 166 ~L~---qciesLvqkv 178 (573)
.|. +.+++|++++
T Consensus 172 ~~~~l~~~~~~~~~~i 187 (189)
T 1atz_A 172 DLPTMVTLGNSFLHKL 187 (189)
T ss_dssp HHHHHHHSCSHHHHHC
T ss_pred hHHHHHHHHHHHHHhh
Confidence 444 3345666553
No 23
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.62 E-value=0.74 Score=46.17 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=73.4
Q ss_pred hcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEec
Q psy11584 11 SSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITD 90 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTD 90 (573)
.||||...-..|-.-.-.+...++..|++|++.|-|.++.+|+.|...|.-..- .-.--.||++||
T Consensus 50 GLVtfag~~~~vl~plT~D~~~il~aL~~l~~~G~T~l~~gL~~A~~aLk~~~~--------------k~~~~rIIlf~d 115 (268)
T 4b4t_W 50 GLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQN--------------KVQHQRIVAFVC 115 (268)
T ss_dssp EEEECCTTSCEEEEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHTCSC--------------TTSEEEEEEEEC
T ss_pred EEEEecCCcceeccCCcchHHHHHHHhhhcCcCCCCChHHHHHHHHHHHHhccc--------------CCCceEEEEEEC
Confidence 578886654445555556788999999999999999999999999999853210 112346788888
Q ss_pred CCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHh----CCceEEEc
Q psy11584 91 GGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVT----GGRSYCVT 162 (573)
Q Consensus 91 G~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvT----GGrsy~v~ 162 (573)
|---.+...+. .|- ..+.++ .-+|+.|-+ |.-.....-++++.+.. |+-|+.|+
T Consensus 116 s~~~~~~~~l~---~la-------k~lkk~----gI~v~vIgF----G~~~~n~~kLe~l~~~~Ng~~~~~s~~v~ 173 (268)
T 4b4t_W 116 SPISDSRDELI---RLA-------KTLKKN----NVAVDIINF----GEIEQNTELLDEFIAAVNNPQEETSHLLT 173 (268)
T ss_dssp SCCSSCHHHHH---HHH-------HHHHHH----TEEEEEEEE----SSCCSSCCHHHHHHHHHCSSTTTSCEEEE
T ss_pred CCCCCCHHHHH---HHH-------HHHHHc----CCEEEEEEe----CCCccchHHHHHHHHHhcCCCCCceeEEE
Confidence 85211111111 110 111111 123555555 22223457799999887 45677775
No 24
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=85.70 E-value=0.037 Score=64.75 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=79.7
Q ss_pred hhccccccccccccccccc--chHHHHHHhhcc-ccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEE
Q psy11584 10 LSSLFFITHASASYAGWKE--NLTTFMTELKNL-QCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86 (573)
Q Consensus 10 ~~llT~ee~p~~VKaGWke--n~~~F~~ELKnL-qa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII 86 (573)
++||+|.+.+.-+ ....+ +...+.+.+++| +..|-|.++.||+.|.+.|-.. ..| +|. --+-+||
T Consensus 169 VglV~Fs~~~~~~-~~lt~~~~~~~l~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~-------~~g-~R~---~~~kviI 236 (1095)
T 3k6s_A 169 FSLMQFSNKFQTH-FTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHA-------SYG-ARR---DAAKILI 236 (1095)
T ss_dssp EEEEEESSSEEEE-ECSHHHHSCSCGGGGTTTCCCCCSCBCHHHHHHHHHTTTTST-------TTT-CCS---SSEEEEE
T ss_pred EEEEEECCeEEEE-ecCcccCCHHHHHHHHhhhhcccCCChHHHHHHHHHHhhccc-------ccc-CCC---CCCeEEE
Confidence 4567776654322 22222 233455666666 4578999999999998854211 111 221 1378999
Q ss_pred EEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCC-ceEEEcCHH
Q psy11584 87 VITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGG-RSYCVTSHR 165 (573)
Q Consensus 87 ~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGG-rsy~v~S~k 165 (573)
+||||..-.....+.+... ++ =+=.-++|+|-+....+ .+.+..-|..|...++| ..|.+.+..
T Consensus 237 llTDG~~~~d~~~~~~~a~----------~~----r~~GI~i~aIGVG~~~~-~~~d~~eL~~IAs~p~g~~vf~v~d~~ 301 (1095)
T 3k6s_A 237 VITDGKKEGDSLDYKDVIP----------MA----DAAGIIRYAIGVGLAFQ-NRNSWKELNDIASKPSQEHIFKVEDFD 301 (1095)
T ss_dssp EEESSCCBSCSSCHHHHHH----------HH----HHHCEEECCEEBSSGGG-STTSSHHHHTTSCSSTTTSCCCBSCSG
T ss_pred EEeCCCcCCCchhHHHHHH----------HH----HHCCCEEEEEecccccc-cccCHHHHHHHHcCCCCceEEEcCCHH
Confidence 9999974211111111110 00 01134577776632110 02356778888888877 788888888
Q ss_pred HHHHHHHHHHHh
Q psy11584 166 MLLQCIDSLVQK 177 (573)
Q Consensus 166 ~L~qciesLvqk 177 (573)
.|.+.++.|.++
T Consensus 302 ~L~~i~~~L~~~ 313 (1095)
T 3k6s_A 302 ALKDIQNQLKEK 313 (1095)
T ss_dssp GGGSSTTTHHHH
T ss_pred HHHHHHHHhhhh
Confidence 887766666654
No 25
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=82.58 E-value=1.2 Score=47.81 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=41.4
Q ss_pred hcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEec
Q psy11584 11 SSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITD 90 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTD 90 (573)
.|++|.+....+...=+.+....+++|..+ +.|-|.++.+|..|.+. .....+||+|||
T Consensus 411 glv~Fs~~~~~~~~t~~~~l~~~l~~l~~~-~~GgT~i~~aL~~a~~~--------------------~~~~~~iIliTD 469 (538)
T 1yvr_A 411 HMVAFSDEMLPCPITVNMLLHEVVEKMSDI-TMGSTDCALPMLWAQKT--------------------NTAADIFIVFTD 469 (538)
T ss_dssp EEEEESSSEECCSCCTTSCHHHHHHHHTTC-CCSCCCTTHHHHHHHHT--------------------TCCCSEEEEEEC
T ss_pred EEEEECCCceEcCCCCcccHHHHHHHHhcC-CCCCCcHHHHHHHHHhc--------------------cCCCCEEEEEcC
Confidence 578888743333222233455567777765 67899999999999864 013479999999
Q ss_pred CC
Q psy11584 91 GG 92 (573)
Q Consensus 91 G~ 92 (573)
|.
T Consensus 470 g~ 471 (538)
T 1yvr_A 470 CE 471 (538)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 26
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=82.37 E-value=0.71 Score=45.96 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=42.6
Q ss_pred hccccccccc--cccc-ccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhh
Q psy11584 11 SSLFFITHAS--ASYA-GWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNR 63 (573)
Q Consensus 11 ~llT~ee~p~--~VKa-GWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nR 63 (573)
+||+|.+-+. .+-+ -|-.+. .+.+.|.+|++.|.|.+|.||..|++++.-++
T Consensus 175 avV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~agG~Tplg~AL~~A~~~~~~~~ 229 (242)
T 3rag_A 175 SVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVARGGTPTGPAIDHAADLLLSHA 229 (242)
T ss_dssp EEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccceeecCCCCChH-HHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 6789998873 3233 788877 78889999999999999999999999985443
No 27
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=78.43 E-value=2.9 Score=39.13 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=40.3
Q ss_pred hcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhh
Q psy11584 11 SSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNM 61 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~ 61 (573)
.||+|.+.-+.+-+---.++..+.+.|.++++.|-|.++.||..|.++|..
T Consensus 49 GLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~~g~t~l~~aL~~A~~~l~~ 99 (192)
T 2x5n_A 49 GLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKH 99 (192)
T ss_dssp EEEECCTTSCCEEEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcEEecCCCCCHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHh
Confidence 478887742333344446789999999999999999999999999998854
No 28
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=77.60 E-value=0.67 Score=31.82 Aligned_cols=10 Identities=60% Similarity=1.305 Sum_probs=8.6
Q ss_pred ccccccCCCc
Q psy11584 456 VRQHMFGNPF 465 (573)
Q Consensus 456 ~R~h~FgNpf 465 (573)
-|.|.|||||
T Consensus 17 lr~~sf~nPf 26 (26)
T 1ckk_B 17 LRKRSFGNPF 26 (26)
T ss_dssp CSSSCCCCCC
T ss_pred hhcccccCCC
Confidence 3789999998
No 29
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=69.47 E-value=1.2 Score=30.78 Aligned_cols=10 Identities=50% Similarity=1.188 Sum_probs=8.6
Q ss_pred cccccCCCcc
Q psy11584 457 RQHMFGNPFK 466 (573)
Q Consensus 457 R~h~FgNpfk 466 (573)
|-|.|||||+
T Consensus 18 ~~~sf~nPf~ 27 (27)
T 1iq5_B 18 HRKRFGNPFR 27 (27)
T ss_dssp HHTSSSCSCC
T ss_pred hcccccCCCC
Confidence 6789999995
No 30
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=62.65 E-value=6.1 Score=45.65 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=30.0
Q ss_pred cccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCC
Q psy11584 40 LQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGG 92 (573)
Q Consensus 40 Lqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~ 92 (573)
|.+.|-|.++.||+.|.++|...+ | + -..-+||+||||.
T Consensus 351 l~~~GGT~i~~AL~~A~~lL~~~~-----------~-~--~~~kvIILLTDG~ 389 (893)
T 2ww8_A 351 MYQFGATFTQKALMKADEILTQQA-----------R-Q--NSQKVIFHITDGV 389 (893)
T ss_dssp GGGGCSCCHHHHHHHHHHHHHHHS-----------C-S--SSEEEEEEEESSC
T ss_pred cccCCCChHHHHHHHHHHHHHhhc-----------c-c--CCCeEEEEEcCCC
Confidence 667899999999999999996421 0 0 1245999999995
No 31
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=45.40 E-value=1.2e+02 Score=34.25 Aligned_cols=46 Identities=4% Similarity=0.050 Sum_probs=33.5
Q ss_pred EEecCCccchhhhHHHHHHhhcC---CCChHHHHHHHHHHhcCCccccc
Q psy11584 376 FVMPYNYPALLPLIDDFFKVHRM---KVTPEWRGNFQKYIGTMPSYYAA 421 (573)
Q Consensus 376 fVLPYNYP~LlpLLdel~kv~k~---~ps~~Wr~~F~~Yl~tvP~YY~~ 421 (573)
++||=|+=.|--++-.|.|-.-+ ..+.+-|.-+...|.++|.-...
T Consensus 572 l~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~ 620 (769)
T 2nut_A 572 FRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSL 620 (769)
T ss_dssp CBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHH
Confidence 77888887766666777775433 34788899999999999864433
No 32
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=45.30 E-value=19 Score=38.73 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=58.8
Q ss_pred hcccccccccccccccccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEec
Q psy11584 11 SSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITD 90 (573)
Q Consensus 11 ~llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTD 90 (573)
.|++|.+....+..-=++.....+++|+.. ..|-|+++.+|..|-+. + ..+.+||+|||
T Consensus 407 ~lv~Fs~~~~~~~~~~~~~l~~~l~~l~~~-~~ggTdi~~~l~~a~~~----~----------------~~~~~vIliTD 465 (535)
T 2nvo_A 407 LTMGFAEQFRPLGITPRDTLESAMQKAQSV-SFGGTDCAQPILWAAQE----R----------------LDVDTFVVYTD 465 (535)
T ss_dssp EEEEEBSSEEECCCCTTCCHHHHHHHTCCS-SBCCCCTTHHHHHHHHT----T----------------CCCSEEEEEES
T ss_pred EEEEECCcceEcCCCcchhHHHHHHHHhhC-CCCCccHHHHHHHHHHh----c----------------CCCCEEEEEeC
Confidence 467787743322222123333444555443 25889999998666321 1 23579999999
Q ss_pred CCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecC---------C---cccCCCchHHHHHhHhCCce
Q psy11584 91 GGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDM---------G---VVACDNSPIDAMCEVTGGRS 158 (573)
Q Consensus 91 G~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~---------g---~vp~d~spI~amCEvTGGrs 158 (573)
|.. ..|... |. ---+..++-..=+-|+|.+-+.... | +...|+..++.+.|.|||+.
T Consensus 466 ~~~---~~g~~~----~~----~al~~~r~~~~~~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 466 NET---WAGQVH----PT----VALDQYAQKMGRAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp SCC---CCCSSC----HH----HHHHHHHHHHSCCCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred CCc---cCCCCC----HH----HHHHHHHHhhCCCCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCc
Confidence 962 222110 00 0001111100003577777773210 0 01135577899999999976
Q ss_pred E
Q psy11584 159 Y 159 (573)
Q Consensus 159 y 159 (573)
|
T Consensus 535 ~ 535 (535)
T 2nvo_A 535 L 535 (535)
T ss_dssp -
T ss_pred C
Confidence 4
No 33
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=38.88 E-value=1.3e+02 Score=34.21 Aligned_cols=136 Identities=12% Similarity=0.127 Sum_probs=68.9
Q ss_pred hHHHHHHhhcccc---CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCCCCccccccc
Q psy11584 30 LTTFMTELKNLQC---TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNL 106 (573)
Q Consensus 30 ~~~F~~ELKnLqa---~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~~Gv~~el~L 106 (573)
...++++|...-+ ...+.+|.||+.|+.+|.. .| +-||++++|-.-.+++.+... ..
T Consensus 287 i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~---------~G----------GrI~~F~sg~pt~GpG~l~~r-~~ 346 (810)
T 1pcx_A 287 IETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG---------VG----------GKIIVVSGTLPNLGIGKLQRR-NE 346 (810)
T ss_dssp HHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT---------TC----------EEEEEEESSCCCSSTTCCCC----
T ss_pred HHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh---------cC----------CEEEEEecCCCCCCCCccccc-cc
Confidence 3456777766433 5788999999999999972 22 589999999754444433321 11
Q ss_pred CCCCCCCCCC-----CCCCCcccccee------eEEEEe-ecCCcccCCCchHHHHHhHhCCceEEEcCH--------HH
Q psy11584 107 PMHSPIPGSE-----MTREPFRWDQRL------FSLVLQ-RDMGVVACDNSPIDAMCEVTGGRSYCVTSH--------RM 166 (573)
Q Consensus 107 p~~s~~pGsE-----LTkEPFRWDQRL------FslVL~-~~~g~vp~d~spI~amCEvTGGrsy~v~S~--------k~ 166 (573)
+ ...|.+ +.+..-.|=..| ..+.+. .-.+.--.|-.-+..+|+.|||.-|...+. ..
T Consensus 347 ~---~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~ 423 (810)
T 1pcx_A 347 S---GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVK 423 (810)
T ss_dssp --------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHH
T ss_pred c---cccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHH
Confidence 1 011111 111111110000 001110 000000123356899999999999888542 12
Q ss_pred HHHHHHHHHH-hcccceEEeeee
Q psy11584 167 LLQCIDSLVQ-KVQSGVVINFEK 188 (573)
Q Consensus 167 L~qciesLvq-kvq~gVVinFe~ 188 (573)
+..-+...++ ++--.++++..+
T Consensus 424 f~~dl~~~l~~~~gf~a~mrVR~ 446 (810)
T 1pcx_A 424 FSTEFAKHISMDFCMETVMRARG 446 (810)
T ss_dssp HHHHHHHHHHCCCCEEEEEEEEE
T ss_pred HHHHHHHHhhhhcceeEEEEEEc
Confidence 4444555443 344566666555
No 34
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=35.39 E-value=1.6e+02 Score=33.37 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=74.7
Q ss_pred cccchHHHHHHhhccccC---CCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCCCCccc
Q psy11584 26 WKENLTTFMTELKNLQCT---GMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQE 102 (573)
Q Consensus 26 Wken~~~F~~ELKnLqa~---glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~~Gv~~ 102 (573)
+|+....++++|...-+. -.+.+|.||+.|+.+|.. . -+-|++++.|-.--+++.+..
T Consensus 248 ~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~---------~----------GGrI~~F~sg~pt~GpG~l~~ 308 (751)
T 3eh1_A 248 SKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP---------T----------GGRVSVFQTQLPSLGAGLLQS 308 (751)
T ss_dssp THHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT---------T----------CEEEEEEECSCCCSSTTCCCC
T ss_pred HHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhc---------C----------CCEEEEEecCCCCCCCCcccc
Confidence 344556778888766544 367899999999999952 1 257888888764444444432
Q ss_pred ccccCCCCCCCCCC----CCCCCcccccee------eEEEEe-ecCCcccCCCchHHHHHhHhCCceEEEcCH-------
Q psy11584 103 DFNLPMHSPIPGSE----MTREPFRWDQRL------FSLVLQ-RDMGVVACDNSPIDAMCEVTGGRSYCVTSH------- 164 (573)
Q Consensus 103 el~Lp~~s~~pGsE----LTkEPFRWDQRL------FslVL~-~~~g~vp~d~spI~amCEvTGGrsy~v~S~------- 164 (573)
. .-+ ..-+++ +.+..-.|=..| ..+.+. .-...--.|-.-+..+|+.|||.-|...+.
T Consensus 309 r-~~~---~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~ 384 (751)
T 3eh1_A 309 R-EDP---NQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPS 384 (751)
T ss_dssp C-CCS---CGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHH
T ss_pred c-ccc---ccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchh
Confidence 1 001 011111 111111110000 001110 000000123355789999999999998652
Q ss_pred --HHHHHHHHHHHHh-cccceEEeeee
Q psy11584 165 --RMLLQCIDSLVQK-VQSGVVINFEK 188 (573)
Q Consensus 165 --k~L~qciesLvqk-vq~gVVinFe~ 188 (573)
..+.+.+...+++ +--..+++..+
T Consensus 385 ~~~~f~~dl~r~l~~~~gf~a~mrVR~ 411 (751)
T 3eh1_A 385 QAEKLQKDLKRYLTRKIGFEAVMRIRC 411 (751)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhccceEEEEEe
Confidence 3567777777754 33555665554
No 35
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=33.72 E-value=2e+02 Score=33.43 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=71.9
Q ss_pred chHHHHHHhhcccc---CCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEecCCCccCCCCcccccc
Q psy11584 29 NLTTFMTELKNLQC---TGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFN 105 (573)
Q Consensus 29 n~~~F~~ELKnLqa---~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTDG~~lt~~~Gv~~el~ 105 (573)
....++++|...-+ ...+.+|.||+.|+.+|.. . -+-|++++.|-.-.+++.+... .
T Consensus 402 ~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~---------~----------GGrI~~F~sg~Pt~GpG~l~~r-e 461 (926)
T 1m2v_B 402 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG---------V----------GGKIIVVSGTLPNLGIGKLQRR-N 461 (926)
T ss_dssp HHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT---------T----------CEEEEEEESSCCCSSTTCCCCC-C
T ss_pred HHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh---------h----------CCEEEEEecCCCCCCCCccccc-c
Confidence 34566777776533 4688999999999999972 1 2589999998754444433321 1
Q ss_pred cCCCCCCCCCC-----CCCCCcccccee------eEEEEe-ecCCcccCCCchHHHHHhHhCCceEEEcCH--------H
Q psy11584 106 LPMHSPIPGSE-----MTREPFRWDQRL------FSLVLQ-RDMGVVACDNSPIDAMCEVTGGRSYCVTSH--------R 165 (573)
Q Consensus 106 Lp~~s~~pGsE-----LTkEPFRWDQRL------FslVL~-~~~g~vp~d~spI~amCEvTGGrsy~v~S~--------k 165 (573)
.. ...|.+ +.+..-.|=.+| ..+.+. .-.+.--.|-.-|..+|+.|||.-|...+. .
T Consensus 462 ~~---~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~ 538 (926)
T 1m2v_B 462 ES---GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIV 538 (926)
T ss_dssp C-------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHH
T ss_pred cc---cccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHH
Confidence 11 111111 222221111111 001110 000001123466899999999999888542 1
Q ss_pred HHHHHHHHHHH-hcccceEEeeee
Q psy11584 166 MLLQCIDSLVQ-KVQSGVVINFEK 188 (573)
Q Consensus 166 ~L~qciesLvq-kvq~gVVinFe~ 188 (573)
.+..-+...++ ++--.++++..+
T Consensus 539 kf~~dl~~~Lt~~~gf~a~mrVR~ 562 (926)
T 1m2v_B 539 KFSTEFAKHISMDFCMETVMRARG 562 (926)
T ss_dssp HHHHHHHHHHHSCCEEEEEEEEEE
T ss_pred HHHHHHHHHhhhhhceeEEEEEEe
Confidence 24444444443 344566666655
No 36
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=27.77 E-value=2.4e+02 Score=31.87 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=31.5
Q ss_pred CchHHHHHhHhCCceEEEcCH--HHHHHHHHHHHHh-------cccceEEeeee
Q psy11584 144 NSPIDAMCEVTGGRSYCVTSH--RMLLQCIDSLVQK-------VQSGVVINFEK 188 (573)
Q Consensus 144 ~spI~amCEvTGGrsy~v~S~--k~L~qciesLvqk-------vq~gVVinFe~ 188 (573)
-.-+..+|+.|||.-|...+. ..+.+.+-.++++ +--.++++..+
T Consensus 355 la~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~ 408 (768)
T 1m2o_A 355 MSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKT 408 (768)
T ss_dssp HHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCBCTTSSBSCEEEEEEEEEE
T ss_pred hHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHhhccccccceEEEEEEEEEe
Confidence 356889999999999988763 4577777777765 23445555544
No 37
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=22.82 E-value=99 Score=33.35 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=34.0
Q ss_pred chhHHHhhcCCCCceEEEEEcCCCCCCCCCCCceeeecCC--CCCeeEEEEecCCc
Q psy11584 329 PLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKAST--NLSTVNLFVMPYNY 382 (573)
Q Consensus 329 pLTq~iL~rk~p~~cWqvfV~nS~~~~~~g~PFGyLKast--~~~~VnLfVLPYNY 382 (573)
.|-+-+.+.+.-..||.|+=.++ ..=++.|.+.- ...+..|.-|||-.
T Consensus 379 aL~~al~~~~kvaIar~v~r~~~------~p~l~aL~P~~~~~~~gl~l~~Lpf~d 428 (565)
T 1jey_B 379 SLIHALDDLDMVAIVRYAYDKRA------NPQVGVAFPHIKHNYECLVYVQLPFME 428 (565)
T ss_dssp HHHHHHHHTTEEEEEEEESSSSS------CCEEEEEEEEECSSCEEEEEEECCCGG
T ss_pred HHHHHHHHCCCEEEEEEEEcCCC------CcEEEEEeccccCCCCeEEEEccCCHH
Confidence 35566778888899998886544 12368887762 35799999999743
Done!