RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11584
(573 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 2e-09
Identities = 78/524 (14%), Positives = 137/524 (26%), Gaps = 173/524 (33%)
Query: 28 ENLTTFMTELK---NLQCTGMTLLGAALKHTF--DVLNMNRMQSGID------TYGQGRS 76
L + EL+ N+ G+ LG+ K DV ++Q +D S
Sbjct: 138 LKLRQALLELRPAKNVLIDGV--LGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 77 P-FFLEPAVIVVITDGGKLSN-ATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFS---- 130
P LE L + ++ +RL
Sbjct: 195 PETVLEM-----------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 131 ----LVLQRDMGVVACDNSPIDAM---CEV---TGGRSYCVTSHRMLLQCIDSLVQKVQS 180
LVL + V + +A C++ T R VT D L +
Sbjct: 244 ENCLLVL-LN---V-QNAKAWNAFNLSCKILLTT--RFKQVT---------DFLSAATTT 287
Query: 181 GVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKL 240
+ ++ + P E K L L + + L
Sbjct: 288 HISLDHHSMTLTPD---EVKSLLLKY--------------------------LDCRPQDL 318
Query: 241 IYVPRSAQKGFPVGFWPIPES---------FWPDIT--------ASSLKG---------- 273
PR P I ES W + SSL
Sbjct: 319 ---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 274 -----FPVGFWPIPES----FWPDITASSLPPRSAHPNVKFTCTSQDP----LVIENLPF 320
FP IP W D+ S + K++ + P + I ++
Sbjct: 376 DRLSVFPPSAH-IPTILLSLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 321 D-------KYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHP---------FGY- 363
+ +Y L S + Y + + + + D+ P G+
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKT-------------FDSDDLIPPYLDQYFYSHIGHH 480
Query: 364 LKASTNLSTVNLFVMPYNYPALLPLIDDFF---KVHRMKVTPEWRGNFQKYIGTMPSYYA 420
LK + + LF M + +D F K+ G+ + + +Y
Sbjct: 481 LKNIEHPERMTLFRMVF--------LDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYK 531
Query: 421 AYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNP 464
Y + ++L ++ L + T + +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Score = 34.1 bits (77), Expect = 0.17
Identities = 44/310 (14%), Positives = 83/310 (26%), Gaps = 90/310 (29%)
Query: 296 PRSAHPNVKFTCTSQDPLVIENLPFDKYELE-PSPLTQYILA----RKQPTICW------ 344
R + +D L +N F KY + P + A R +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 345 --QVFVANSYKNSDV--GHPFG--YLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRM 398
+ + V F +L S + M LL ID
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQID-------- 210
Query: 399 KVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKR-MAAP--------LR 449
P W + + IH++ Q L+R + + L
Sbjct: 211 ---PNWTSR--------SDHSSNIKLRIHSI--------QAELRRLLKSKPYENCLLVLL 251
Query: 450 EVESTPVRQHMFGNPFKIDKRMMV---DEADIDLVGGSPHKGGGKRSPHGDSGGGGGGVS 506
V++ + N F + ++++ + D + + H ++
Sbjct: 252 NVQN---AKAW--NAFNLSCKILLTTRFKQVTDFLSAATTT-------HISLDHHSMTLT 299
Query: 507 PR-----LAS--KRKPGPIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYL 559
P L +P +P R L P + S+I +S+ + L +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLP------REVL--TTNPRRL--SIIAESIRDGL--ATWDNW 347
Query: 560 KRMKIQAKDE 569
K +
Sbjct: 348 KHVNCDKLTT 357
Score = 31.7 bits (71), Expect = 0.76
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 30/112 (26%)
Query: 26 W-KENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAV 84
+ F NL C LL K D L+ + L+
Sbjct: 254 QNAKAWNAF-----NLSCK--ILLTTRFKQVTDFLS-----------AATTTHISLDHHS 295
Query: 85 IVVITDGGK--LSNATGVQEDFNLP--MHSPIP------GSEMTREPFRWDQ 126
+ + D K L + +LP + + P + WD
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDN 346
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 8e-06
Identities = 55/347 (15%), Positives = 101/347 (29%), Gaps = 106/347 (30%)
Query: 256 WPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVI 315
+P + + AS L+ E F LP + T+ LV
Sbjct: 20 LLVPTASF--FIASQLQ----------EQF-----NKILPEPTEGFAADDEPTTPAELVG 62
Query: 316 ENLPFDKYELEPSPLTQY--ILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTV 373
+ L + +EPS + Q+ +L +C F + +D+ H A+ L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLN-----LCLTEFENCYLEGNDI-HAL----AAKLLQEN 112
Query: 374 NLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPS--YYAAYSSSIHTMPI 431
LI ++ M P + + S + A + + I
Sbjct: 113 -----DTTLVKTKELIKNYITARIMAKRPFDKKS--------NSALFRAVGEGNAQLVAI 159
Query: 432 --SQMGNYQEYLK------------------RMAAPLREVESTPVR-QHMFGNPFKIDK- 469
Q GN +Y + A L E+ T + + +F I +
Sbjct: 160 FGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 470 -RMMVDEADIDLVGGSPHKGGGKRSPHGDSGGGGGGVS-P-----RLA----SKRKPGPI 518
+ D D + P +S P +LA + + G
Sbjct: 219 LENPSNTPDKDYLLSIP-------------------ISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 519 PKHVQPLRRALIRMG----MPAAISQSLIPDSMEN--SLSYSVLSYL 559
P ++ + AI+++ DS E+ ++ L
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAET---DSWESFFVSVRKAITVL 303
Score = 42.7 bits (100), Expect = 4e-04
Identities = 75/485 (15%), Positives = 131/485 (27%), Gaps = 205/485 (42%)
Query: 5 AACILL---------SSLFFITHASAS----YA-----GWKENLTTFMTELKNLQCTGMT 46
A I+ S+LF A G N + EL++L T
Sbjct: 128 TARIMAKRPFDKKSNSALF--RAVGEGNAQLVAIFGGQG---NTDDYFEELRDLYQTYHV 182
Query: 47 LLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNL 106
L+G +K + + L+ +++ +D F + ++ L N
Sbjct: 183 LVGDLIKFSAETLS-ELIRTTLDA-----EKVF--TQGLNIL---EWLENP--------- 222
Query: 107 PMHSPIPGSE-MTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHR 165
S P + + P S L +GV+ + ++ G + R
Sbjct: 223 ---SNTPDKDYLLSIP-------ISCPL---IGVIQLAH--YVVTAKLLG---FTPGELR 264
Query: 166 MLLQCIDSLVQKVQSGVVI-------NFEKIGPDPPPINESKYLTLSFESNISSSFGSST 218
L+ Q + + V I +F + K +T+ F
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFV--------SVRKAITVLF------------ 304
Query: 219 PVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLK---GFP 275
+ R + +P S P I SL+ G P
Sbjct: 305 ---------------FIGVR--------CYEAYPN------TSLPPSILEDSLENNEGVP 335
Query: 276 VGFWP----------------------IPESFWPDITASSL-----------PPRS---- 298
P +P +I SL PP+S
Sbjct: 336 S---PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---SLVNGAKNLVVSGPPQSLYGL 389
Query: 299 --------AHPN-----VKFTCTSQDPLVIEN------LPF-DKYELEPSPLTQYILAR- 337
A + F S+ L N PF L P+ + I
Sbjct: 390 NLTLRKAKAPSGLDQSRIPF---SERKLKFSNRFLPVASPFHSHL-LVPA--SDLINKDL 443
Query: 338 KQPTICW-----QVFVANSYKNSDVGHPFGYLKASTNLSTVN-LFVMPYNYPALLPL--- 388
+ + + Q+ V +++ SD+ L S + V+ + +P +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRV----LSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 389 -IDDF 392
I DF
Sbjct: 500 HILDF 504
Score = 37.7 bits (87), Expect = 0.012
Identities = 39/242 (16%), Positives = 67/242 (27%), Gaps = 118/242 (48%)
Query: 2 LISAACILLSS---------------LFFI----------------THASASYAGWKENL 30
L++A I + LFFI + E +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGV 334
Query: 31 TTFMTELKNLQCTGMTL-------------------LGAALKHTFD--V----------L 59
+ M L + +T + +L + V L
Sbjct: 335 PSPM-----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 60 NMN----RMQSGIDTYGQGRSPF----------FL-----------EPAVIVVITDGGKL 94
N+ + SG+D Q R PF FL PA ++ D K
Sbjct: 390 NLTLRKAKAPSGLD---QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK- 445
Query: 95 SNATGVQEDFNLPMHSPIPGSEM---------------TREPFRWDQRLF---SLVLQRD 136
+N + +D +P++ GS++ R P +W+ + +L D
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--D 503
Query: 137 MG 138
G
Sbjct: 504 FG 505
Score = 34.6 bits (79), Expect = 0.10
Identities = 95/574 (16%), Positives = 157/574 (27%), Gaps = 234/574 (40%)
Query: 95 SNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVA--CDNSPIDAMCE 152
A+ +QE FN + P G EP LV + +G V+ + S + +
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEP----TTPAELVG-KFLGYVSSLVEPSKVGQFDQ 82
Query: 153 VTGGRSYCVTSHRMLLQCIDS--LVQK-VQSGVVINFEKIGPDPPPINESKYLTLSF--- 206
V + L ++ L + + + + + ++K L ++
Sbjct: 83 VL----------NLCLTEFENCYLEGNDIHA-LAAKLL--QENDTTLVKTKELIKNYITA 129
Query: 207 --------ESNISSSFGSSTPVGT-------GG---------------------AMNIIN 230
+ +S+ + G GG ++I
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 231 STAWHNCRKLIYVPRSAQKGFPVGF----W-----PIPESFWPDITASSLKGFPVGFWPI 281
+A +LI A+K F G W P+ D S P+
Sbjct: 190 FSAET-LSELIRTTLDAEKVFTQGLNILEWLENPSNTPD---KDYLLSI----PI----- 236
Query: 282 PESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPT 341
S P I L AH V T P L Y+ T
Sbjct: 237 --SC-PLIGVIQL----AHYVV--TAKLLG-------------FTPGELRSYLKG---AT 271
Query: 342 IC---------------WQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPY----NY 382
W+ F + K + LF + Y
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRK---------AITV--------LFFIGVRCYEAY 314
Query: 383 P--ALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEY 440
P +L P I ++ + E G PS SI + Q+ Q+Y
Sbjct: 315 PNTSLPPSI--------LEDSLE-NNE-----GV-PSPML----SISNLTQEQV---QDY 352
Query: 441 LKRMAAPLREVESTPVRQHMF-----GNPFKIDKRMMVDEADIDLVGGSP---------- 485
+ + + L P + + G + +V V G P
Sbjct: 353 VNKTNSHL------PAGKQVEISLVNG------AKNLV-------VSGPPQSLYGLNLTL 393
Query: 486 HKGGGKRSPHGDSGGGGGGVSPRLASKRKP------GPI--PKHVQPLRRALIRMGMPAA 537
K K D S S+RK P+ P H L A
Sbjct: 394 RK--AKAPSGLDQ-------SRIPFSERKLKFSNRFLPVASPFHSHLLVPA--------- 435
Query: 538 ISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFD 571
S + D ++N++S++ K ++I D FD
Sbjct: 436 -SDLINKDLVKNNVSFNA----KDIQIPVYDTFD 464
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens}
Length = 185
Score = 33.9 bits (78), Expect = 0.063
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 27 KENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86
+E + + EL+ + G T + + + + + +VI+
Sbjct: 64 REQIRQGLEELQKVLPGGDTYMHEGFERASEQI---------YYENRQGYRT---ASVII 111
Query: 87 VITDG 91
+TDG
Sbjct: 112 ALTDG 116
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 31.2 bits (71), Expect = 0.61
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 27 KENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIV 86
+ ++ + +LK + G T + LK + + G ++I+
Sbjct: 63 RGKISKGLEDLKRVSPVGETYIHEGLKLANEQI----------QKAGGLKT----SSIII 108
Query: 87 VITDG 91
+TDG
Sbjct: 109 ALTDG 113
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 31.0 bits (70), Expect = 0.69
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 25/100 (25%)
Query: 29 NLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVI 88
+LT +L+ L G T L + ++ R + I ++
Sbjct: 63 SLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQARSRGMT--------------PTIALL 108
Query: 89 TDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRL 128
TDG N+ + + + + +
Sbjct: 109 TDG-----------RGNIALDGTANRELAGEQATKVARAI 137
>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A
{Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*
Length = 290
Score = 29.1 bits (66), Expect = 3.7
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 18/73 (24%)
Query: 446 APLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVGGS---PHKG--------GGKRSP 494
A +R P +++ +PF ++ DE GG PH+G G
Sbjct: 22 ARVRRSIGRPELKNL--DPF-----LLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMA 74
Query: 495 HGDSGGGGGGVSP 507
H D G G ++P
Sbjct: 75 HEDFCGHTGKMNP 87
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 28.4 bits (64), Expect = 3.8
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 439 EYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEA 476
+Y +++ R ++T V + M ++ DE
Sbjct: 63 DYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDEC 100
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 28.0 bits (63), Expect = 3.9
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 439 EYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEA 476
++ ++ + V+ T V++ M +D ++
Sbjct: 59 DFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDC 96
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L*
1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L*
1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L*
1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Length = 165
Score = 28.3 bits (63), Expect = 4.3
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 7/36 (19%)
Query: 486 HKGGGKRSPHGDSGGGGGGVSPRLASKRKPGPIPKH 521
+G G R GD+G P+ K
Sbjct: 22 RRGAGHRGGRGDAGRDKH-------EFHNHEPLGKS 50
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome,
ribosome, eukaryotic initiation factor 60S, translation,
large ribosomal subunit; 3.52A {Tetrahymena thermophila}
PDB: 4a1a_K 4a1c_K 4a1e_K
Length = 149
Score = 28.2 bits (62), Expect = 4.4
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 486 HKGGGKRSPHGDSGGGG--GGVSPRLASKRKPGPIPKHVQPLRR 527
H GK G GG G GG+ K P +R
Sbjct: 19 HGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRT 62
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 28.4 bits (64), Expect = 4.4
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 439 EYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEA 476
+ +K +A V M N + D+
Sbjct: 78 DLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQL 115
>2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint
center for structural genomics, JCSG; HET: MSE FLC;
2.00A {Streptococcus agalactiae 2603V}
Length = 181
Score = 28.3 bits (63), Expect = 5.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 384 ALLPLIDDFFKVHRMKVTPEWRGN 407
ALL + D + + P++RGN
Sbjct: 87 ALLRIDDKTAVLKKFFTYPKYRGN 110
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation,
SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A
{Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A*
1deo_A* 1pp4_A* 3c1u_A*
Length = 233
Score = 28.1 bits (62), Expect = 6.2
Identities = 5/53 (9%), Positives = 13/53 (24%)
Query: 404 WRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPV 456
+ A S++ + + YL+ A + +
Sbjct: 77 GSLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAKGAKVI 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,864,464
Number of extensions: 543073
Number of successful extensions: 1200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1192
Number of HSP's successfully gapped: 22
Length of query: 573
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 474
Effective length of database: 3,937,614
Effective search space: 1866429036
Effective search space used: 1866429036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)