RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11584
         (573 letters)



>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 156

 Score = 29.5 bits (66), Expect = 0.63
 Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 5/39 (12%)

Query: 471 MMVDEADIDLVGG-----SPHKGGGKRSPHGDSGGGGGG 504
           M  D   I +  G     +      K  P G   GG GG
Sbjct: 1   MFQDVLVITVAAGRGGDGAVSFRREKFVPKGGPDGGDGG 39


>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal
           domain {Bacillus subtilis [TaxId: 1423]}
          Length = 157

 Score = 29.2 bits (65), Expect = 0.86
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 9/44 (20%)

Query: 471 MMVDEADIDLVGGS---------PHKGGGKRSPHGDSGGGGGGV 505
           M VD+  + + GG            K   K  P G  GG GG V
Sbjct: 1   MFVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDV 44


>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
           synthase) {Salmonella typhimurium [TaxId: 90371]}
          Length = 302

 Score = 28.7 bits (63), Expect = 1.8
 Identities = 10/62 (16%), Positives = 17/62 (27%)

Query: 219 PVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGF 278
            VGTGG +  +         K   +  + +                      ++G   GF
Sbjct: 174 GVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGF 233

Query: 279 WP 280
            P
Sbjct: 234 IP 235


>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal
           domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
          Length = 94

 Score = 26.8 bits (59), Expect = 2.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 155 GGRSYCVTSHRMLLQCIDSLVQK 177
              +YCV+ ++ LL C D  V K
Sbjct: 19  QDFTYCVSFNKDLLACWDPDVGK 41


>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
           synthase) {Thermotoga maritima [TaxId: 2336]}
          Length = 293

 Score = 27.8 bits (61), Expect = 3.5
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 498 SGGGGGGVSPRLASKRKPGPIPKHVQPLRRALIRMGMPAA-----ISQSLIPDSMENSL 551
           +GG   GV   L      G     V+P +  ++  G P       I    +P  ++ S+
Sbjct: 169 TGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSV 227


>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 403

 Score = 27.1 bits (58), Expect = 6.2
 Identities = 10/55 (18%), Positives = 17/55 (30%)

Query: 234 WHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPD 288
             +      + R A +  PVG   IP      ++  +L        P  + F   
Sbjct: 277 RFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLT 331


>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 526

 Score = 27.0 bits (58), Expect = 7.4
 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 1/98 (1%)

Query: 191 PDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKL-IYVPRSAQK 249
           P         +    + ++   +   S P   G  M   N+    +C  L +++P    K
Sbjct: 43  PQSLTKWSDIWNATKYANSCCQNIDQSFPGFHGSEMWNPNTDLSEDCLYLNVWIPAPKPK 102

Query: 250 GFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWP 287
              V  W     F    ++  +                
Sbjct: 103 NATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVS 140


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 26.5 bits (58), Expect = 7.7
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 524 PLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQA 566
           PLR+ L+  G+  A+  S + D +        L  +    +Q 
Sbjct: 62  PLRKILLESGLGEALVSSGLSDELLQPQFGIGLKGVSEENVQK 104


>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
          coli [TaxId: 562]}
          Length = 131

 Score = 25.8 bits (56), Expect = 8.6
 Identities = 4/13 (30%), Positives = 6/13 (46%)

Query: 82 PAVIVVITDGGKL 94
          P +IV I     +
Sbjct: 4  PCIIVAIRRDDSI 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,194,835
Number of extensions: 106256
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 12
Length of query: 573
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 483
Effective length of database: 1,171,896
Effective search space: 566025768
Effective search space used: 566025768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)