BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11585
(2227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Query: 1258 GETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVG 1317
GE Y CP C SR D L +H R HTGEKP+ C CGKSF+ ++ L RH +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCS 1377
Y+C CG+ + +NL+ H R HTGEK Y C CGK F+Q A H+ TH+ E+ +KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 1378 YCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHS 1426
C +F L H++TH + + C CG ++ R L H + H+
Sbjct: 138 ECGKSFSREDNLHTHQRTHT-GEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 97/195 (49%), Gaps = 19/195 (9%)
Query: 1179 LVEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSH 1238
+E + Y C +C K+++R L H H GE+ C C KSF LT H +R+H
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTH 72
Query: 1239 RMKVTRVNQLKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKS 1298
GE YKCP C S+ +L+ H R HTGEKP++C CGKS
Sbjct: 73 ------------------TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Query: 1299 FAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQW 1358
F+ HL+ H + Y+C CG+ + NL H R HTGEK Y C CGK F++
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 1359 ASHYYHKFTHSEERS 1373
+ H+ TH+ +++
Sbjct: 175 DALNVHQRTHTGKKT 189
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 90/176 (51%), Gaps = 5/176 (2%)
Query: 316 GVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLG 375
G + Y CP C SF R + L EH +HTGEKPY C CGKSF K+ L H + H G
Sbjct: 18 GEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTG 74
Query: 376 -KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTY 434
K Y+C CG + S AN + H +H GEK Y C CG F+ + L H+ TH ++ Y
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 435 PCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRT 490
C C + + L H + HT G+ + C CG F R L H RTH +T
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHT-GEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 1/164 (0%)
Query: 1283 LHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTG 1342
L GEKP++C CGKSF+ +HL H + Y+C CG+ +D +L H R HTG
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 1343 EKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVK 1402
EK Y C CGK F+Q A+ H+ TH+ E+ + C C +F L H++TH +
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT-GEKP 133
Query: 1403 HVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYL 1446
+ C CG ++ NL +H + H+ +P++C C F R L
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 88/202 (43%), Gaps = 29/202 (14%)
Query: 622 GVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFG 681
G Y C C F+R D L H RTHTG++PY C CGKSF KK L RH
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 682 YQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQCS 741
Y+C CG+ S N + H H GEK Y C CG F
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH----------------- 120
Query: 742 FCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCN 801
L+ H++TH +G+ + C CG F+ N+ H + H+ E+PY C C
Sbjct: 121 -----------LRAHQRTH-TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 802 VSFKEKKSLVRHYKIHKGVNTN 823
SF + +L H + H G T+
Sbjct: 169 KSFSRRDALNVHQRTHTGKKTS 190
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 94/199 (47%), Gaps = 25/199 (12%)
Query: 236 IMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVH 295
+ GEK + CPEC +S+ L +H HTGEK + C C + F K L H +R H
Sbjct: 15 LEPGEKP-YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTH 72
Query: 296 HMNFTSRDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEAC 355
G + YKCP C SF + L+ H +HTGEKPY C C
Sbjct: 73 -------------------TGEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 356 GKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTG 414
GKSF L AH + H G K Y+C CG + S N H +H GEK Y C CG
Sbjct: 112 GKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 415 FAYKSSLYHHRFTHIKDRT 433
F+ + +L H+ TH +T
Sbjct: 171 FSRRDALNVHQRTHTGKKT 189
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 93/205 (45%), Gaps = 41/205 (20%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1544
Y C C K + ++ +HQR H KPY+C CG S KK L H R HTGEK Y C
Sbjct: 22 YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 1545 QQCGASFTQWASLFYHKFSHSETRNQKHVSASSCHQKVPNKSVTAKFKALFTERXXXXXX 1604
+CG SF+Q A+L H+ +H+ +
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEK------------------------------------ 104
Query: 1605 XXXIYECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
Y C C K + ++ HQR H KPY+C CG S + +L H R HTGEK
Sbjct: 105 ---PYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 1665 KYVCQQCGASFTQWASLFYHKFSHS 1689
Y C +CG SF++ +L H+ +H+
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHT 185
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 97/207 (46%), Gaps = 25/207 (12%)
Query: 253 YGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTSRDHDLRRETET 312
+G+ S + + A+ GEK + C C + F + L EH +R H
Sbjct: 4 FGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEH-QRTH----------------- 44
Query: 313 NVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKW 372
G + YKCP C SF L H +HTGEKPY C CGKSF + L AH +
Sbjct: 45 --TGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRT 99
Query: 373 HLG-KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
H G K Y C CG + S A+ + H +H GEK Y C CG F+ + +L+ H+ TH +
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVHTS 458
+ Y C C + + L H + HT
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Query: 329 SSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTM 387
S F +++ + L GEKPY C CGKSF L A + + H G K Y+C CG +
Sbjct: 2 SEFGSSSSVAQAALE-PGEKPYACPECGKSFSRSDHL-AEHQRTHTGEKPYKCPECGKSF 59
Query: 388 SNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPK 447
S+ + H +H GEK Y C CG F+ +++L H+ TH ++ Y C C + +
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 448 TLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLL 507
L+ H + HT G+ + C CG F NL TH RTH ++ + C C + R +L
Sbjct: 120 HLRAHQRTHT-GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALN 178
Query: 508 RHYTTH 513
H TH
Sbjct: 179 VHQRTH 184
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 75/179 (41%), Gaps = 21/179 (11%)
Query: 541 ILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVH 600
LE Y CP C + ++ H H+GE+ Y C C K F K L+ H +R H
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTH 72
Query: 601 KMRVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCG 660
G YKC C F++ +LR H RTHTG++PY C CG
Sbjct: 73 --------------------TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECG 112
Query: 661 KSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGF 719
KSF HL H Y+C CG+ S N H H GEK Y C CG F
Sbjct: 113 KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1668
Y C C K + ++ +HQR H KPY+C CG S KK L H R HTGEK Y C
Sbjct: 22 YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 1669 QQCGASFTQWASLFYHKFSHSETRNQKCEESFDNCNNLWSHMFIKHEDSDFVCNLCPPDS 1728
+CG SF+Q A+L H+ +H+ + C E C +S +
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQL------------------ 118
Query: 1729 KIVIKYAHLLERHMKKHHTMQQRCVCSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKS 1787
AHL R ++ HT ++ C CG S++ NL TH H+ K + C CGKS
Sbjct: 119 ------AHL--RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 1788 FKKKDLLREHMIVHS 1802
F ++D L H H+
Sbjct: 171 FSRRDALNVHQRTHT 185
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 1504 QRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFS 1563
Q ++ KPY C CG S L +H R HTGEK Y C +CG SF+ L H+ +
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 1564 HSETRNQKHVSASSCHQKVPNKSVTAKFKALFTERXXXXXXXXXIYECDICKKQVTNRKN 1623
H+ + Y+C C K + R N
Sbjct: 72 HTGEK---------------------------------------PYKCPECGKSFSQRAN 92
Query: 1624 MIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFY 1683
+ HQR H KPY C CG S L H R HTGEK Y C +CG SF++ +L
Sbjct: 93 LRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT 151
Query: 1684 HKFSHSETRNQKCEE---SFDNCNNLWSHM 1710
H+ +H+ + KC E SF + L H
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Query: 1912 IFVDGAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVH 1971
G + CP+C L H H+GEK Y C C K F L H + H
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-TH 72
Query: 1972 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ 2031
+ ++C C ++F NL+ H R HTGEK Y C CG SF L H +H +
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 2032 -FVCSFCGNTYKNPKSLDSHIRNSHTNRKKSICDDCTKAMS 2071
+ C CG ++ +L +H R +HT K C +C K+ S
Sbjct: 133 PYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFS 172
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 86/214 (40%), Gaps = 51/214 (23%)
Query: 459 GDVRHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTHGTQLA 518
G+ + C CG F +L H RTH ++ + C C + ++ L RH TH
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----- 72
Query: 519 AIAFNNSQSSSSDHRLVKSEVQILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYT 578
G++ YKCP C + ++ + + H H+GE+ Y
Sbjct: 73 ------------------------TGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYA 107
Query: 579 CSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRY 638
C C K F L H +R H G YKC C F+R
Sbjct: 108 CPECGKSFSQLAHLRAH-QRTH--------------------TGEKPYKCPECGKSFSRE 146
Query: 639 DSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
D+L H RTHTG++PY C CGKSF + LN H
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 86/225 (38%), Gaps = 58/225 (25%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSSKCEESFDNCNNLWSHMFIKHENS 1864
+P+ C C F HL +H RTHT K + +C +SF + +L
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKP---YKCPECGKSFSDKKDL----------- 65
Query: 1865 DFVCNLCPPDSKIVIKYAHLLVRHMKKHHTMQLXXXXXXXXXXXXTQIFVDGAIRFKCPD 1924
RH + H G +KCP+
Sbjct: 66 ---------------------TRHQRTH----------------------TGEKPYKCPE 82
Query: 1925 CPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDR 1984
C L+AH H+GEK YAC C K F + + L H + H + ++C C +
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGK 141
Query: 1985 AFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHIN 2029
+F NL H R HTGEK Y C CG SF +LN+H +H
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 28/195 (14%)
Query: 1371 ERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTGRP 1430
E+ + C C +F L EH++TH + + C CG ++ +K+L H + H+ +P
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHT-GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 1431 HQCDVCNAKFKLRKYLKHVSASSCHQKVPNKSVTAKFKALFTERXXXXXXXXXIYECDIC 1490
++C C F R L+ HQ+ Y C C
Sbjct: 78 YKCPECGKSFSQRANLR------AHQRT--------------------HTGEKPYACPEC 111
Query: 1491 KKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGAS 1550
K + ++ HQR H KPY+C CG S + +L H R HTGEK Y C +CG S
Sbjct: 112 GKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 1551 FTQWASLFYHKFSHS 1565
F++ +L H+ +H+
Sbjct: 171 FSRRDALNVHQRTHT 185
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1937 AHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM 1996
A + GEK YAC C K F R L H + H + ++C C ++F D +L H
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 1997 RIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ-FVCSFCGNTYKNPKSLDSHIRNSH 2055
R HTGEK Y C CG SF +L H +H + + C CG ++ L +H R +H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-TH 128
Query: 2056 TNRKKSICDDCTKAMS 2071
T K C +C K+ S
Sbjct: 129 TGEKPYKCPECGKSFS 144
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 85/229 (37%), Gaps = 58/229 (25%)
Query: 1775 SNKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKA 1834
K + C CGKSF + D L EH H+ +P+ C C F +K L +H RTHT K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 1835 TNSFSSSKCEESFDNCNNLWSHMFIKHENSDFVCNLCPPDSKIVIKYAHLLVRHMKKHHT 1894
+ +C +SF NL + H + H
Sbjct: 78 ---YKCPECGKSFSQRANLRA--------------------------------HQRTH-- 100
Query: 1895 MQLXXXXXXXXXXXXTQIFVDGAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICN 1954
G + CP+C L+AH H+GEK Y C C
Sbjct: 101 --------------------TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 1955 KVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
K F R L H + H + ++C C ++F L +H R HTG+K
Sbjct: 141 KSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 89/222 (40%), Gaps = 52/222 (23%)
Query: 431 DRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRT 490
++ Y C C + + L EH + HT G+ + C CG F +K+L H RTH ++
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHT-GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 491 HVCELCNANLKTRRSLLRHYTTHGTQLAAIAFNNSQSSSSDHRLVKSEVQILEGDRIKYK 550
+ C C + R +L H TH G++ Y
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTH-----------------------------TGEKP-YA 107
Query: 551 CPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTN 610
CP C + ++ + + H H+GE+ Y C C K F ++ L H +R H
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTH---------- 156
Query: 611 DVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDR 652
G YKC C F+R D+L +H RTHTG +
Sbjct: 157 ----------TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 76/181 (41%), Gaps = 24/181 (13%)
Query: 528 SSSDHRLVKSEVQILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFF 587
S SDH +E Q YKCP C + ++ + RH H+GE+ Y C C K F
Sbjct: 32 SRSDHL---AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFS 88
Query: 588 IKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRT 647
+ L H +R H G Y C C F++ LR H RT
Sbjct: 89 QRANLRAH-QRTH--------------------TGEKPYACPECGKSFSQLAHLRAHQRT 127
Query: 648 HTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGE 707
HTG++PY C CGKSF + +L+ H Y+C CG+ S H H G+
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 708 K 708
K
Sbjct: 188 K 188
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 97/239 (40%), Gaps = 61/239 (25%)
Query: 64 KSAVEIDGEIKFQCPDCHTMMKNFAYLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHY 122
++A+E GE + CP+C +L +H R H+GE + C EC KSF+ KK L H
Sbjct: 12 QAALEP-GEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH- 68
Query: 123 KKLHTIRIRSSREENDMKKKTMVYVEGVVKYKCPECGFMVKRFQGLREHIVSVHAQVKDH 182
++ HT G YKCPECG + LR H H K +
Sbjct: 69 QRTHT---------------------GEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPY 106
Query: 183 VCIVCGAAFGLARRLKTHYIRRHTVNILTQANHDNEDKLDVTKIFNVNKEDCQIMQGEKV 242
C CG +F L+ H R HT GEK
Sbjct: 107 ACPECGKSFSQLAHLRAHQ-RTHT--------------------------------GEKP 133
Query: 243 KFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+KCPEC +S+ L H HTGEK + C C + F ++ LN H +R H TS
Sbjct: 134 -YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH-QRTHTGKKTS 190
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 735 ERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERP 794
E+ + C C K + L EH++TH +G+ + C CG F+ +K++ RH + H+ E+P
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTH-TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 795 YICEYCNVSFKEKKSLVRHYKIHKGVNTNTLP----SNDIIKHMRNAHQYDIIQAQDYLI 850
Y C C SF ++ +L H + H G P S + H+R AHQ + Y
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR-AHQRTHTGEKPYK- 135
Query: 851 QSTQEIDLPCEMCGELNLFSKYCKEHGIVCEESDTYKKKTHSCIYCEESFSDSKFLDAHV 910
C CG+ + +E + + +K + C C +SFS L+ H
Sbjct: 136 ---------CPECGK-----SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Query: 911 NIEHGKRV 918
GK+
Sbjct: 182 RTHTGKKT 189
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 1969 AVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHI 2028
A+ + + C C ++F +L H R HTGEK Y C CG SF L H +H
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 2029 NAQ-FVCSFCGNTYKNPKSLDSHIRNSHTNRKKSICDDCTKAMSTPAPSSKSVCIEHSNL 2087
+ + C CG ++ +L +H R +HT K C +C K+ S A ++ H+
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLA-HLRAHQRTHTGE 131
Query: 2088 IPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC 2125
P + C +C +SF +NL +H + C C
Sbjct: 132 KP--YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 71/189 (37%), Gaps = 27/189 (14%)
Query: 763 GDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKGVNT 822
G+ + C CG F+ ++ H + H+ E+PY C C SF +KK L RH + H G
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 823 NTLPSNDIIKHMR---NAHQYDIIQAQDYLIQSTQEIDLPCEMCGELNLFSKYCKEHGIV 879
P R AHQ + Y C CG+ + + H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYA----------CPECGKSFSQLAHLRAHQRT 127
Query: 880 CEESDTYKKKTHSCIYCEESFSDSKFLDAHVNIEHGKRVHGDDEFECYQCNQCGVELYLG 939
YK C C +SFS L H G++ Y+C +CG + +
Sbjct: 128 HTGEKPYK-----CPECGKSFSREDNLHTHQRTHTGEKP--------YKCPECG-KSFSR 173
Query: 940 REAFLNHMR 948
R+A H R
Sbjct: 174 RDALNVHQR 182
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 72/219 (32%), Gaps = 66/219 (30%)
Query: 1071 EHLNKSTIIVDGVVKFQCPHCNINHDDLVSLKQHI-VEAHVPSISCSHCEMKFKNLKDFK 1129
+HL + G ++CP C + D L +H C C F + +
Sbjct: 35 DHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR 94
Query: 1130 EHMTSVHLNKRNLRDDTMYCELTEEEITLNIDDMHAPNRTVESDREKYKLVEGDQVRYKC 1189
H RT ++ Y C
Sbjct: 95 AHQ-----------------------------------RTHTGEKP-----------YAC 108
Query: 1190 SDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQLK 1249
+C K++++ L+ H H GE+ C C KSF + L H +R+H
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTH----------- 156
Query: 1250 KKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEK 1288
GE YKCP C SR D+L H R HTG+K
Sbjct: 157 -------TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 69/222 (31%), Gaps = 59/222 (26%)
Query: 1987 FDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ-FVCSFCGNTYKNPK 2045
F + + GEK Y C CG SF L H +H + + C CG ++ + K
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 2046 SLDSHIRNSHTNRKKSICDDCTKAMSTPAPSSKSVCIEHSNLIPKCHSCQKCEESFDNCN 2105
L H R +HT K C +C K SF
Sbjct: 64 DLTRHQR-THTGEKPYKCPECGK-------------------------------SFSQRA 91
Query: 2106 NLWSHMFIKHENSDFVCNLCPPDSKIVIKYVHLLVRHMKKHHTMQLRISSVSKHIKSKTQ 2165
NL +H + C C K + HL H + H
Sbjct: 92 NLRAHQRTHTGEKPYACPEC---GKSFSQLAHLRA-HQRTH------------------- 128
Query: 2166 IFVDGAIHHSCQKCEESFDNCNNLWSHMFIKHENRDFVCNLC 2207
G + C +C +SF +NL +H + + C C
Sbjct: 129 ---TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
Length = 87
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 1314 MKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERS 1373
M+ Y+C CG+ + SSNL+ H R HTGEK Y C CGK F+Q + H+ TH+ E+
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 1374 FKCSYCAMTFRCPRTLTEHKKTH 1396
+KC C +F L+ H++TH
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGY 1318
E YKCP C S+ +LQ+H R HTGEKP+ C CGKSF+ L++H + Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1319 QCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+C CG+ + S +L H R H +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKY 1346
EKP+ C CGKSF+ +L++H + Y+C CG+ + SS+L+ H R HTGEK Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1347 VCEICGKGFTQWASHYYHKFTHSEER 1372
C CGK F++ H+ TH ++
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 1212 ERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPSIT 1271
E+ C C KSF Q S L +H +R+H GE YKCP C
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTH------------------TGEKPYKCPECGKSF 42
Query: 1272 SRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRH 1308
S+ LQ+H R HTGEKP+ C CGKSF+ +HL RH
Sbjct: 43 SQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1945 EKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 2004
EK Y C C K F + S L+ H + H + ++C C ++F +L+ H R HTGEK
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 2005 YVCETCGASFVHWGSLNIHNYSHIN 2029
Y C CG SF L+ H +H N
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1544
Y+C C K + N+ HQR H KPY+C CG S L H R HTGEK Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 1545 QQCGASFTQWASLFYHKFSH 1564
+CG SF++ L H+ +H
Sbjct: 64 PECGKSFSRSDHLSRHQRTH 83
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1668
Y+C C K + N+ HQR H KPY+C CG S L H R HTGEK Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 1669 QQCGASFTQWASLFYHKFSH 1688
+CG SF++ L H+ +H
Sbjct: 64 PECGKSFSRSDHLSRHQRTH 83
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 347 EKPYTCEACGKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTMSNAANFKDHLDSHRGEKK 405
EKPY C CGKSF L H + H G K Y+C CG + S +++ + H +H GEK
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 406 YTCETCGTGFAYKSSLYHHRFTH 428
Y C CG F+ L H+ TH
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCN 685
YKC C F++ +L+ H RTHTG++PY C CGKSF L +H Y+C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 686 ICGRVMSDSTNFKDHLDNHKGEK 708
CG+ S S + H H+ +K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 1634 LLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 1693
+ KPY+C CG S +L H R HTGEK Y C +CG SF+Q + L H+ +H+ +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 1694 QKCEE---SFDNCNNLWSHM 1710
KC E SF ++L H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQ 80
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 574 ERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHICDS 633
E+ Y C C K F + L +H +R H G YKC C
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTH--------------------TGEKPYKCPECGK 40
Query: 634 IFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
F++ L+ H RTHTG++PY C CGKSF HL+RH
Sbjct: 41 SFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 374 LGKGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRT 433
+ K Y+C CG + S ++N + H +H GEK Y C CG F+ S L H+ TH ++
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 434 YPCTYCERKYQSPKTLKEHLKVH 456
Y C C + + L H + H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ-FV 2033
+ ++C C ++F NL+ H R HTGEK Y C CG SF L H +H + +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 2034 CSFCGNTYKNPKSLDSHIRNSHTNRK 2059
C CG ++ L H R +H N+K
Sbjct: 63 CPECGKSFSRSDHLSRHQR-THQNKK 87
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEKKY 710
++PY C CGKSF +L +H Y+C CG+ S S++ + H H GEK Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 711 TCEICGTGF 719
C CG F
Sbjct: 62 KCPECGKSF 70
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 1748 MQQRCVCSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRP 1806
M++ C CG S++ NL+ H H+ K + C CGKSF + L++H H+ +P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 1807 FLCEFCNAGFKCRKHLLQHYRTH 1829
+ C C F HL +H RTH
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 735 ERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERP 794
E+ ++C C K + L++H++TH +G+ + C CG F+ ++ +H + H+ E+P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH-TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 795 YICEYCNVSFKEKKSLVRHYKIHK 818
Y C C SF L RH + H+
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 1187 YKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVN 1246
YKC +C K++++ L+ H H GE+ C C KSF Q S L +H +R+H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTH-------- 55
Query: 1247 QLKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEK 1288
GE YKCP C SR D L +H R H +K
Sbjct: 56 ----------TGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 1510 LLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+ KPY+C CG S +L H R HTGEK Y C +CG SF+Q + L H+ +H+
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT 56
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 403 EKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGDVR 462
EK Y C CG F+ S+L H+ TH ++ Y C C + + L++H + HT G+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT-GEKP 60
Query: 463 HICQTCGSEFHTRKNLLTHIRTHNTDR 489
+ C CG F +L H RTH +
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTSRD 303
+KCPEC +S+ S L+KH HTGEK + C C + F + L +H +R H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTH-------- 55
Query: 304 HDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEK 348
G + YKCP C SF R + L H +H +K
Sbjct: 56 -----------TGEKPYKCPE--CGKSFSRSDHLSRHQRTHQNKK 87
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 549 YKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMAR 608
YKCP C + ++ S ++H H+GE+ Y C C K F + L +H +R H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTH-------- 55
Query: 609 TNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTH 648
G YKC C F+R D L H RTH
Sbjct: 56 ------------TGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%)
Query: 682 YQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQCS 741
Y+C CG+ S S+N + H H GEK Y C CG F E+ ++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 742 FCEKKYMSPKTLKEHEQTHR 761
C K + L H++TH+
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 239 GEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVH 295
GEK +KCPEC +S+ S+L+KH HTGEK + C C + F + L+ H +R H
Sbjct: 29 GEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH-QRTH 83
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 769 CDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNTLP 826
C CG F+ N+ +H + H+ E+PY C C SF + L +H + H G P
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 431 DRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRT 490
++ Y C C + + L++H + HT G+ + C CG F +L H RTH ++
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHT-GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 491 HVCELCNANLKTRRSLLRHYTTH 513
+ C C + L RH TH
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1371 ERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTGRP 1430
E+ +KC C +F L +H++TH + + C CG ++ +L H + H+ +P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHT-GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 1431 HQCDVCNAKFKLRKYL 1446
++C C F +L
Sbjct: 61 YKCPECGKSFSRSDHL 76
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 72 EIKFQCPDCHTMMKNFAYLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYKKLHTIRI 130
E ++CP+C + L+KH R H+GE + C EC KSF+ L++H ++ HT
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKH-QRTHT--- 56
Query: 131 RSSREENDMKKKTMVYVEGVVKYKCPECGFMVKRFQGLREH 171
G YKCPECG R L H
Sbjct: 57 ------------------GEKPYKCPECGKSFSRSDHLSRH 79
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1172 SDREKYKLVEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLT 1231
S+ +K++ + YKC +C K++++ +L+ H H GE+ C C KSF + L+
Sbjct: 18 SNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLS 77
Query: 1232 EHYKRSHRMK 1241
H +R+H+ K
Sbjct: 78 RH-QRTHQNK 86
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 40/126 (31%)
Query: 1539 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQKHVSASSCHQKVPNKSVTAKFKALFTER 1598
EK Y C +CG SF+Q ++L H+ +H+ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEK------------------------------ 31
Query: 1599 XXXXXXXXXIYECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYR 1658
Y+C C K + ++ HQR H KPY+C CG S L H R
Sbjct: 32 ---------PYKCPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQR 81
Query: 1659 IHTGEK 1664
H +K
Sbjct: 82 THQNKK 87
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 1663 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQKCEE---SFDNCNNLWSHMFIKHEDSDF 1719
EK Y C +CG SF+Q ++L H+ +H+ + KC E SF ++L H + +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1720 VCNLCPPDSKIVIKYAHLLERHMKKH 1745
C C K + H L RH + H
Sbjct: 62 KCPEC---GKSFSRSDH-LSRHQRTH 83
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 71 GEIKFQCPDCHTMMKNFAYLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYK 123
GE ++CP+C + L+KH R H+GE + C EC KSF+ L H +
Sbjct: 29 GEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 30/111 (27%)
Query: 465 CQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTHGTQLAAIAFNN 524
C CG F NL H RTH ++ + C C + L +H TH +
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP------ 60
Query: 525 SQSSSSDHRLVKSEVQILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGER 575
YKCP C + ++ RH H ++
Sbjct: 61 ------------------------YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNTLP--------SNDIIKHMR 835
E+PY C C SF + +L +H + H G P S+D+ KH R
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 550 KCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMART 609
+CP C + + S K H H+GE+ + C C KC+F K L EH + R M R+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-----EARNCMNRS 63
Query: 610 NDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHL 669
V + C +C F R LRLH+ +HTG+ PY C C + F+ KK L
Sbjct: 64 EQV-------------FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
Query: 670 NRHYNCSHAG 679
H H+G
Sbjct: 111 QSHMIKLHSG 120
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 245 KCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTSRDH 304
+CP C + + + LK H HTGEK F C C + +F K L EH R N +R
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR----NCMNRSE 64
Query: 305 DLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRR 364
+ + C C +F+R L+ HM+SHTGE PY C +C + F K+
Sbjct: 65 QV-------------FTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKD 109
Query: 365 LNAHYNKWHLG 375
L +H K H G
Sbjct: 110 LQSHMIKLHSG 120
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 1915 DGAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENH--MKAVHE 1972
G+ +CP C + LK H H+GEK + C C K + R L H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 1973 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIH 2023
+ F C VC F L+LHM HTGE Y C +C F+ L H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERS--- 1373
G +C C + LKVH R HTGEK + C CGK + + + H+ + RS
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 1374 FKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHM-KIHS 1426
F CS C TFR L H +H ++ + C++C ++ +K+L SHM K+HS
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHT-GEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 1188 KCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQ 1247
+C C K + Y LK H H GE+ C C K +++ L EH R N
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR---------NC 59
Query: 1248 LKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKR 1307
+ + ++ + C +C R L+ HM HTGE P+ C C + F ++ L+
Sbjct: 60 MNRSEQV-------FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS 112
Query: 1308 HFNNIH 1313
H +H
Sbjct: 113 HMIKLH 118
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 621 DGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH--YNC-SH 677
G + +C C F L++H R HTG++P+ C CGK + K++L H NC +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 678 AGFGYQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFM 720
+ + C++C + H+ +H GE Y C C FM
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 1978 QCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHN----YSHINAQFV 2033
+C C + F Y LK+H R HTGEK + C CG + +L H + F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 2034 CSFCGNTYKNPKSLDSHIRNSHTNRKKSICDDCTK 2068
CS C T++ L H+ SHT C C++
Sbjct: 69 CSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQ 102
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 327 CPSSFQRFNA---LQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHIC 383
CP+ ++F + L+ H HTGEKP+ C CGK + K L H +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR------------ 57
Query: 384 GSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKY 443
N N R E+ +TC C F + L H +H + Y C+ C +++
Sbjct: 58 -----NCMN--------RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104
Query: 444 QSPKTLKEHL-KVHTS 458
K L+ H+ K+H+
Sbjct: 105 MQKKDLQSHMIKLHSG 120
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 706 GEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQ---THRS 762
G C C F+ E+ F+C C K Y + L EHE +RS
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 763 GDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHY-KIHKGVN 821
+ C C F R + H H+ E PY C C+ F +KK L H K+H G +
Sbjct: 64 EQV-FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Query: 822 TN 823
+
Sbjct: 123 SG 124
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 38/149 (25%)
Query: 1515 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQKHVS 1574
EC TC SK L H R HTGEK + C +CG + + +L H+ + R+++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ--- 65
Query: 1575 ASSCHQKVPNKSVTAKFKALFTERXXXXXXXXXIYECDICKKQVTNRKNMIDHQRSVHEL 1634
++ C +C++ R + H S H
Sbjct: 66 ---------------------------------VFTCSVCQETFRRRMELRLHMVS-HTG 91
Query: 1635 LKPYECDTCGHGLSSKKSLDDHY-RIHTG 1662
PY+C +C KK L H ++H+G
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 1211 GERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPSI 1270
G + C C K F L+++Y + H K T GE ++CP C
Sbjct: 4 GSSGVECPTCHKKF-----LSKYYLKVHNRKHT--------------GEKPFECPKCGKC 44
Query: 1271 TSRYDSLQQHMR---LHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVL 1327
R ++L +H ++ E+ F+C VC ++F R L+ H + ++ Y+C+ C +
Sbjct: 45 YFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104
Query: 1328 TDSSNLKVHM-RNHTG 1342
+L+ HM + H+G
Sbjct: 105 MQKKDLQSHMIKLHSG 120
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 70 DGEIKFQCPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKSFTTKKCLREHYKKLHTIR 129
G +CP CH + YLK H R + + F C +C K + K+ L EH +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR----- 57
Query: 130 IRSSREENDMKKKTMVYVEGVVKYKCPECGFMVKRFQGLREHIVSVHAQVKDHVCIVCGA 189
N M + V+ C C +R LR H+VS H + C C
Sbjct: 58 -------NCMNRSEQVFT-------CSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQ 102
Query: 190 AFGLARRLKTHYIRRHT 206
F + L++H I+ H+
Sbjct: 103 QFMQKKDLQSHMIKLHS 119
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 1729 KIVIKYAHLLERHMKKHHTMQQRCVCSYCGNSYANPGNLRTHMVVH----SNKNHICEIC 1784
K + KY L+ H +KH T ++ C CG Y NL H + S + C +C
Sbjct: 16 KFLSKY--YLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC 72
Query: 1785 GKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHY-RTHTKPKA 1834
++F+++ LR HM+ H+ P+ C C+ F +K L H + H+ P +
Sbjct: 73 QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 1341 TGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSD 1400
+G C C K F H H+ E+ F+C C + L EH+ + ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 1401 VKHV--CNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYLK 1447
+ V C+ C + R L HM H+ P++C C+ +F +K L+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 1639 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQK--- 1695
EC TC SK L H R HTGEK + C +CG + + +L H+ + R+++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 1696 ---CEESFDNCNNLWSHMFIKHEDSDFVCNLC 1724
C+E+F L HM + + C+ C
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 27/144 (18%)
Query: 457 TSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+SG C TC +F ++ L H R H ++ C C + +LL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE------ 55
Query: 517 LAAIAFNNSQSSSSDHRLVKSEVQILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERK 576
A N S+ Q+ + C +C + E + H H+GE
Sbjct: 56 -ARNCMNRSE-------------QV-------FTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 577 YTCSICSKCFFIKNRLSEHYRRVH 600
Y CS CS+ F K L H ++H
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 1610 ECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYR---IHTGEKKY 1666
EC C K+ ++ + H R H KP+EC CG K++L +H ++ E+ +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 1667 VCQQCGASFTQWASLFYHKFSHSETRNQK---CEESFDNCNNLWSHMFIKH 1714
C C +F + L H SH+ K C + F +L SHM H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1183 DQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSH 1238
+QV + CS C +T+ R EL+ H++ H GE C+ C + F Q L H + H
Sbjct: 64 EQV-FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVH 295
F C C ++ EL+ H+ HTGE + CS C + F K L H ++H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 1781 CEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
C C K F K L+ H H+ +PF C C + +++LL+H + ++ F+
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 1841 SKCEESFDNCNNLWSHMFIKHENSDFVCNLC 1871
S C+E+F L HM + C+ C
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 1920 FKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVH 1971
F C C + L+ H+ H+GE Y C C++ F++ L++HM +H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 1485 YECDICKKQVTNRKNMIDHQRS--VHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
+EC C K ++N+++H+ ++ + + C C + L H HTGE Y
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 1543 VCQQCGASFTQWASLFYH 1560
C C F Q L H
Sbjct: 96 KCSSCSQQFMQKKDLQSH 113
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 1609 YECDICKKQVTNRKNMIDHQRS--VHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
+EC C K ++N+++H+ ++ + + C C + L H HTGE Y
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 1667 VCQQCGASFTQWASLFYH 1684
C C F Q L H
Sbjct: 96 KCSSCSQQFMQKKDLQSH 113
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 1754 CSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMI---VHSTLRPFLC 1809
C C + + L+ H H+ + C CGK + +K+ L EH ++ + + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 1810 EFCNAGFKCRKHLLQHYRTHTKPKATNSFSSSKCEESFDNCNNLWSHMFIKHENSD 1865
C F+ R L H +HT + S C + F +L SHM H
Sbjct: 70 SVCQETFRRRMELRLHMVSHT---GEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%)
Query: 1315 KVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSF 1374
K + C CGR T S NL +H R HT E+ Y C+IC K F + H++ HS+E+ F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 1375 KCSYCAMTFRCPRTLTEHKKTHV 1397
KC C F RTL HK H+
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHM 97
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1544
+ C C + T N++ H+R+ H +PY CD C + L DH IH+ EK + C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 1545 QQCGASFTQWASLFYHKFSHSETRNQKHVS 1574
Q+CG F Q +L HK H +T + S
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1668
+ C C + T N++ H+R+ H +PY CD C + L DH IH+ EK + C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 1669 QQCGASFTQWASLFYHKFSHSET 1691
Q+CG F Q +L HK H +T
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQT 99
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1753 VCSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEF 1811
+C +CG + NL H H++ + + C+IC K+F+++D LR+H +HS +PF C+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 1812 CNAGF 1816
C GF
Sbjct: 79 CGKGF 83
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ-FV 2033
++F CK C R F YNL +H R HT E+ Y C+ C +F L H Y H + F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 2034 CSFCGNTYKNPKSLDSH 2050
C CG + ++L H
Sbjct: 76 CQECGKGFCQSRTLAVH 92
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 625 KYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQC 684
++ C C FT+ +L +H RTHT +RPYTCD+C K+F + HL H ++C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 685 NICGRVMSDSTNFKDHLDNH 704
CG+ S H H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 735 ERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERP 794
++ F C FC + + L HE+TH + + + CD C F + ++ H +HS E+P
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 795 YICEYCNVSFKEKKSLVRHYKIHKGVNTNTLPS 827
+ C+ C F + ++L H +H ++ T S
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1945 EKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 2004
+K++ C C + F + L H + H R + C +C +AF +L+ H IH+ EK
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 2005 YVCETCGASFVHWGSLNIHNYSHINA 2030
+ C+ CG F +L +H H+
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 376 KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYP 435
K + C CG + + N H +H E+ YTC+ C F + L HR+ H K++ +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 436 CTYCERKYQSPKTLKEHLKVH 456
C C + + +TL H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKY 1346
+K F C+ CG+ F +L H + Y C++C + +L+ H H+ EK +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 1347 VCEICGKGFTQWASHYYHKFTHSEERS 1373
C+ CGKGF Q + HK H + S
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 1261 KYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK-VGYQ 1319
++ C C ++ +L H R HT E+P++C +C K+F ++HL+ H IH K ++
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFK 75
Query: 1320 CNVCGRVLTDSSNLKVHMRNH 1340
C CG+ S L VH H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVG 1317
E Y C +C R D L+ H +H+ EKPF CQ CGK F L H +HM+
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTS 100
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 1920 FKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQC 1979
F C C L H H+ E+ Y C IC+K F R L +H + +H K + F+C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 1980 KVCDRAFFDVYNLKLHMRIH 1999
+ C + F L +H +H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 1775 SNKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKA 1834
+ K IC+ CG+ F K L H H+ RP+ C+ C+ F+ + HL H H+K K
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 1835 TNSFSSSKCEESFDNCNNLWSHMFIKHENS 1864
F +C + F L H + + S
Sbjct: 74 ---FKCQECGKGFCQSRTLAVHKTLHMQTS 100
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%)
Query: 342 LSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLDSHR 401
L +K + C+ CG+ F L H + Y C IC + +DH H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTHIK 430
EK + C+ CG GF +L H+ H++
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 401 RGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
+ +K++ C+ CG F +L H TH +R Y C C + ++ L++H +H S +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-SKE 71
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
CQ CG F + L H H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 1404 VCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYLK 1447
+C CG + NLL H + H+ RP+ CD+C+ F+ + +L+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQK 1695
K + C CG + +L H R HT E+ Y C C +F + L H++ HS+ + K
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 1696 CEE 1698
C+E
Sbjct: 76 CQE 78
Score = 37.7 bits (86), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 29/98 (29%)
Query: 1343 EKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVK 1402
+K+++C+ CG+ FT+ + H+ TH++ER + C C FR
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR------------------ 56
Query: 1403 HVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKF 1440
+ +L H IHS +P +C C F
Sbjct: 57 -----------RQDHLRDHRYIHSKEKPFKCQECGKGF 83
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 464 ICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTHGTQ 516
IC+ CG F NLL H RTH +R + C++C+ + + L H H +
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 1663 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQKCE---ESFDNCNNLWSHMFIKHEDSDF 1719
+K+++C+ CG FT+ +L H+ +H++ R C+ ++F ++L H +I ++ F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 1720 VCNLC 1724
C C
Sbjct: 75 KCQEC 79
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETR 1568
K + C CG + +L H R HT E+ Y C C +F + L H++ HS+ +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 548 KYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEH 595
++ C C R +T H H+ ER YTC IC K F ++ L +H
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 1718 DFVCNLCPPDSKIVIKYAHLLERHMKKHHTMQQRCVCSYCGNSYANPGNLRTHMVVHS-N 1776
+F+C C + K +LL ++ HT ++ C C ++ +LR H +HS
Sbjct: 17 EFICKFC---GRHFTKSYNLLIH--ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 1777 KNHICEICGKSFKKKDLLREHMIVH 1801
K C+ CGK F + L H +H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 1183 DQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEH 1233
D+ Y C C K + R L+ H +H E+ C C K F Q L H
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C SR D L +H+R+HTG+KPF C++C ++F+ +HL H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+ C++CGR S K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F R L H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHINAQ 2031
K + C+ CG F H H+ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F+R D L H+R HTG +P+ C +C ++F HL H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 684 CNICGRVMSDSTNFKDHLDNHKGEK 708
C+ICGR + S K H H +K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F + LT H R H G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI-RIH------------------TGQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
SR D L H+R HTGEKPF+C +CG+ FA + KRH IH++
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 23/101 (22%)
Query: 574 ERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHIC 631
ER Y C + C + F + L+ H R +H G ++C IC
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHT--------------------GQKPFQCRIC 40
Query: 632 DSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
F+R D L H+RTHTG++P+ CD+CG+ F RH
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F L RH +QC IC R S S + H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R Y CP C F R + L H+ HTG+KP+ C C ++F L H K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEK 404
+ C ICG + + K H H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 1314 MKVGYQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
M+ Y C V C R + S L H+R HTG+K + C IC + F++ H TH+ E
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1372 RSFKCSYCAMTFRCPRTLTEHKKTHV 1397
+ F C C F H K H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + EL +H+ +HTG+K F C +C R NF+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR------------------NFSR 46
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
DH L H+ +HTGEKP+ C+ CG+ F
Sbjct: 47 SDH--------------------------------LTTHIRTHTGEKPFACDICGRKF 72
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 1994
L H+ IH+G+K + C IC + F R L H++ H + F C +C R F K
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 80
Query: 1995 HMRIHTGEK 2003
H +IH +K
Sbjct: 81 HTKIHLRQK 89
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1543 VCQQCGASFTQ 1553
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1667 VCQQCGASFTQ 1677
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F +L THIRTH +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C RH H Q
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 374 LGKGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
+ + Y C + C S + H+ H G+K + C C F+ L H TH +
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVH 456
+ + C C RK+ K H K+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F + D L H+ +H+ +PF C C F HL H RTHT K F+
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACD 66
Query: 1842 KCEESFDNCNNLWSHMFIKHENSD 1865
C F + H I D
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQKD 90
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ L H+ +H+ + C IC ++F + D L H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTKPK 1833
C F +H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ ++ H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F RH KIH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ L H+ HTGEK F C +C R F + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 707 EKKYTCEI--CGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGD 764
E+ Y C + C F ++ FQC C + + L H +TH +G+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGE 60
Query: 765 IKHICDTCGSEFNTRKNMLRHTKVH 789
CD CG +F RHTK+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1634 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
+ +PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1692 RNQKCE 1697
+ C+
Sbjct: 61 KPFACD 66
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1510 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+ +PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ L H H + + C C R + L H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ + RH ++H+ ++P+ C C +F L H + H G
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIR 1975
G F+C C L H+ H+GEK +AC IC + F R + H K +H + +
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Query: 1976 D 1976
D
Sbjct: 90 D 90
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1371 ERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
ER + C C F LT H + H C C ++ +L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1429 RPHQCDVCNAKF 1440
+P CD+C KF
Sbjct: 61 KPFACDICGRKF 72
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1180 VEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
+ Q ++C C + ++R L H+ H GE+ +C +C + F + H K
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 71 GEIKFQCPDCHTMMKNFA---YLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYK 123
G+ FQC C M+NF+ +L H+R H+GE F+CD C + F + H K
Sbjct: 31 GQKPFQCRIC---MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C SR D L +H+R+HTG+KPF C++C ++F+ +HL H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNH 1340
+ C++CGR S K H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F R L H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHIN 2029
K + C+ CG F H H+
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIHLR 86
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F + LT H R H G+ ++C +C
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHI-RIH------------------TGQKPFQCRICMR 41
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
SR D L H+R HTGEKPF+C +CG+ FA + KRH IH++
Sbjct: 42 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLR 86
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F+R D L H+R HTG +P+ C +C ++F HL H +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 684 CNICGRVMSDSTNFKDHLDNH 704
C+ICGR + S K H H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 606 MARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVA 665
+R++++ + I G ++C IC F+R D L H+RTHTG++P+ CD+CG+ F
Sbjct: 15 FSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 73
Query: 666 KKHLNRH 672
RH
Sbjct: 74 SDERKRH 80
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F L RH +QC IC R S S + H+ H GEK
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 61 PFACDICGRKF 71
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R Y CP C F R + L H+ HTG+KP+ C C ++F L H K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 378 YRCHICGSTMSNAANFKDHLDSH 400
+ C ICG + + K H H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 1318 YQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFK 1375
Y C V C R + S L H+R HTG+K + C IC + F++ H TH+ E+ F
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 1376 CSYCAMTFRCPRTLTEHKKTHV 1397
C C F H K H+
Sbjct: 64 CDICGRKFARSDERKRHTKIHL 85
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + EL +H+ +HTG+K F C +C R NF+
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR------------------NFSR 45
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
DH L H+ +HTGEKP+ C+ CG+ F
Sbjct: 46 SDH--------------------------------LTTHIRTHTGEKPFACDICGRKF 71
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 1994
L H+ IH+G+K + C IC + F R L H++ H + F C +C R F K
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 79
Query: 1995 HMRIH 1999
H +IH
Sbjct: 80 HTKIH 84
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 1543 VCQQCGASFTQ 1553
C CG F +
Sbjct: 63 ACDICGRKFAR 73
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 1667 VCQQCGASFTQ 1677
C CG F +
Sbjct: 63 ACDICGRKFAR 73
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F +L THIRTH +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C RH H Q
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F + D L H+ +H+ +PF C C F HL H RTHT K F+
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACD 65
Query: 1842 KCEESFDNCNNLWSHMFI 1859
C F + H I
Sbjct: 66 ICGRKFARSDERKRHTKI 83
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 376 KGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRT 433
+ Y C + C S + H+ H G+K + C C F+ L H TH ++
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 434 YPCTYCERKYQSPKTLKEHLKVH 456
+ C C RK+ K H K+H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ ++ H + H+ E
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F RH KIH
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ L H+ +H+ + C IC ++F + D L H+ H+ +PF C+
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 1811 FCNAGFKCRKHLLQHYRTHTK 1831
C F +H + H +
Sbjct: 66 ICGRKFARSDERKRHTKIHLR 86
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ L H+ HTGEK F C +C R F + H K
Sbjct: 26 RIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 1636 KPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 1693
+PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+ +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 1694 QKCE 1697
C+
Sbjct: 62 FACD 65
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1512 KPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ L H H + + C C R + L H++ HT G+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 59
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F H + H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ + RH ++H+ ++P+ C C +F L H + H G
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMK 1968
G F+C C L H+ H+GEK +AC IC + F R + H K
Sbjct: 30 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1371 ERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
ER + C C F LT H + H C C ++ +L +H++ H+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 1429 RPHQCDVCNAKF 1440
+P CD+C KF
Sbjct: 60 KPFACDICGRKF 71
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1180 VEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
+ Q ++C C + ++R L H+ H GE+ +C +C + F + H K
Sbjct: 27 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIH 1536
++C IC + + ++ H R+ H KP+ CD CG + H +IH
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIH 1660
++C IC + + ++ H R+ H KP+ CD CG + H +IH
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 71 GEIKFQCPDCHTMMKNFA---YLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYK 123
G+ FQC C M+NF+ +L H+R H+GE F+CD C + F + H K
Sbjct: 30 GQKPFQCRIC---MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTK 82
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268-
Dna Complex At 2.1 Angstroms
Length = 87
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C SR D L +H+R+HTG+KPF C++C ++F+ +HL H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNH 1340
+ C++CGR S K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F R L H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHIN 2029
K + C+ CG F H H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLR 87
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F + LT H R++ G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI---------RIHT----------GQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
SR D L H+R HTGEKPF+C +CG+ FA + KRH IH++
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F+R D L H+R HTG +P+ C +C ++F HL H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 684 CNICGRVMSDSTNFKDHLDNH 704
C+ICGR + S K H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 606 MARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVA 665
+R++++ + I G ++C IC F+R D L H+RTHTG++P+ CD+CG+ F
Sbjct: 16 FSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 666 KKHLNRH 672
RH
Sbjct: 75 SDERKRH 81
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F L RH +QC IC R S S + H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R Y CP C F R + L H+ HTG+KP+ C C ++F L H K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 378 YRCHICGSTMSNAANFKDHLDSH 400
+ C ICG + + K H H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 1318 YQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFK 1375
Y C V C R + S L H+R HTG+K + C IC + F++ H TH+ E+ F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1376 CSYCAMTFRCPRTLTEHKKTHV 1397
C C F H K H+
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + EL +H+ +HTG+K F C +C R NF+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR------------------NFSR 46
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
DH L H+ +HTGEKP+ C+ CG+ F
Sbjct: 47 SDH--------------------------------LTTHIRTHTGEKPFACDICGRKF 72
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 1975 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ- 2031
R + C V CDR F L H+RIHTG+K + C C +F L H +H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 2032 FVCSFCGNTY 2041
F C CG +
Sbjct: 63 FACDICGRKF 72
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1543 VCQQCGASFTQ 1553
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1667 VCQQCGASFTQ 1677
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 1994
L H+ IH+G+K + C IC + F R L H++ H + F C +C R F K
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 80
Query: 1995 HMRIH 1999
H +IH
Sbjct: 81 HTKIH 85
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F +L THIRTH +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTH 513
+ C++C RH H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F + D L H+ +H+ +PF C C F HL H RTHT K F+
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACD 66
Query: 1842 KCEESFDNCNNLWSHMFI 1859
C F + H I
Sbjct: 67 ICGRKFARSDERKRHTKI 84
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 376 KGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRT 433
+ Y C + C S + H+ H G+K + C C F+ L H TH ++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 434 YPCTYCERKYQSPKTLKEHLKVH 456
+ C C RK+ K H K+H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ ++ H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F RH KIH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ L H+ +H+ + C IC ++F + D L H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTK 1831
C F +H + H +
Sbjct: 67 ICGRKFARSDERKRHTKIHLR 87
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ L H+ HTGEK F C +C R F + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 1636 KPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 1693
+PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+ +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 1694 QKCE 1697
C+
Sbjct: 63 FACD 66
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1512 KPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ L H H + + C C R + L H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ + RH ++H+ ++P+ C C +F L H + H G
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMK 1968
G F+C C L H+ H+GEK +AC IC + F R + H K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1371 ERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
ER + C C F LT H + H C C ++ +L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1429 RPHQCDVCNAKF 1440
+P CD+C KF
Sbjct: 61 KPFACDICGRKF 72
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1180 VEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
+ Q ++C C + ++R L H+ H GE+ +C +C + F + H K
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIH 1536
++C IC + + ++ H R+ H KP+ CD CG + H +IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIH 1660
++C IC + + ++ H R+ H KP+ CD CG + H +IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 34/109 (31%)
Query: 1694 QKCEESFDNCNNLWSHMFIKHEDSDFVCNLCPPDSKIVIKYAHLLERHMKKHHTMQQRCV 1753
+ C+ F + L H+ I HT Q+
Sbjct: 10 ESCDRRFSRSDELTRHIRI---------------------------------HTGQKPFQ 36
Query: 1754 CSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVH 1801
C C +++ +L TH+ H+ K C+ICG+ F + D + H +H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 71 GEIKFQCPDCHTMMKNFA---YLKKHVRDNHSGETFSCDECSKSFTTKKCLREHYK 123
G+ FQC C M+NF+ +L H+R + + F+CD C + F + H K
Sbjct: 31 GQKPFQCRIC---MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 1314 MKVGYQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
M+ Y C V C R + +NL H+R HTG+K + C IC + F+Q AS H TH+ E
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 1372 RSFKCSYCAMTFRCPRTLTEHKKTHV 1397
+ F C C F T T H K H+
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHL 86
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F + + L+ H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHI 2028
K + C+ CG F + H H+
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHL 86
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 30/116 (25%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C S+ +L H+R+HTG+KPF
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPF-------------------------- 35
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEER 1372
QC +C R + ++L H+R HTGEK + C+ICG+ F + H H ++
Sbjct: 36 --QCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 347 EKPYTC--EACGKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTMSNAANFKDHLDSHRGE 403
E+PY C E+C + F K L+ H + H G K ++C IC S A+ H+ +H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 404 KKYTCETCGTGFAYKSSLYHHRFTHIKDR 432
K + C+ CG FA + H H++ +
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F K +L+ H +QC IC R S + H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 23/101 (22%)
Query: 574 ERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHIC 631
ER Y C + C + F K L H R +H G ++C IC
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IH--------------------TGQKPFQCRIC 40
Query: 632 DSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
F++ SL H+RTHTG++P+ CD+CG+ F RH
Sbjct: 41 MRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH 81
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F Q + L H R H G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIH------------------TGQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
S+ SL H+R HTGEKPF+C +CG+ FA RH IH++
Sbjct: 43 NFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH-TKIHLR 87
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + + N+ H R +H KP++C C S + SL+ H R HTGEK +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 1543 VCQQCGASFT 1552
C CG F
Sbjct: 64 ACDICGRKFA 73
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + + N+ H R +H KP++C C S + SL+ H R HTGEK +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 1667 VCQQCGASFT 1676
C CG F
Sbjct: 64 ACDICGRKFA 73
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F++ +L H+R HTG +P+ C +C ++F + LN H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 684 CNICGR 689
C+ICGR
Sbjct: 65 CDICGR 70
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 1634 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
+ +PY C ++C S K +LD H RIHTG+K + C+ C +F+Q ASL H +H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 1692 RNQKCE 1697
+ C+
Sbjct: 61 KPFACD 66
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 374 LGKGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
+ + Y C + C S N H+ H G+K + C C F+ ++SL H TH +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVH 456
+ + C C RK+ + T H K+H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 1994
L H+ IH+G+K + C IC + F + ++L H++ H + F C +C R F ++
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTR 80
Query: 1995 HMRIHTGEK 2003
H +IH +K
Sbjct: 81 HTKIHLRQK 89
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F + +L HIRTH +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT-GQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C T + RH H Q
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + + L H+ +HTG+K F C +C R F + LN H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR--------- 55
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
+HTGEKP+ C+ CG+ F
Sbjct: 56 -----------------------------------------THTGEKPFACDICGRKF 72
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 30/100 (30%)
Query: 1975 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQF 2032
R + C V CDR F NL H+RIHTG+K + C C +F SL
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL------------ 50
Query: 2033 VCSFCGNTYKNPKSLDSHIRNSHTNRKKSICDDCTKAMST 2072
++HIR +HT K CD C + +T
Sbjct: 51 ---------------NAHIR-THTGEKPFACDICGRKFAT 74
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ NL TH+ +H+ + C IC ++F ++ L H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTKPK 1833
C F +H + H + K
Sbjct: 67 ICGRKFATLHTRTRHTKIHLRQK 89
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 31/110 (28%)
Query: 682 YQCNI--CGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQ 739
Y C + C R S TN H+ H G+K FQ
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP----------------------------FQ 36
Query: 740 CSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVH 789
C C + + +L H +TH +G+ CD CG +F T RHTK+H
Sbjct: 37 CRICMRNFSQQASLNAHIRTH-TGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ + ++ H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH-TGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F + RH KIH
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ K++L H H + + C C R + +L H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F T H + H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ + L H+ HTGEK F C +C R F + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK 83
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ + N+ H ++H+ ++P+ C C +F ++ SL H + H G
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F +K L H+ +H+ +PF C C F + L H RTHT K F+
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP---FACD 66
Query: 1842 KCEESFDNCNNLWSHMFIKHENSD 1865
C F + H I D
Sbjct: 67 ICGRKFATLHTRTRHTKIHLRQKD 90
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIR 1975
G F+C C L AH+ H+GEK +AC IC + F T H K +H + +
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK-IHLRQK 89
Query: 1976 D 1976
D
Sbjct: 90 D 90
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
++C IC + + + ++ H R+ H KP+ CD CG ++ + H +IH +K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRT-HTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
++C IC + + + ++ H R+ H KP+ CD CG ++ + H +IH +K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRT-HTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 1180 VEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
+ Q ++C C + +++ L H+ H GE+ +C +C + F + T H K
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK 83
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 71 GEIKFQCPDCHTMMKNF---AYLKKHVRDNHSGETFSCDECSKSFTT 114
G+ FQC C M+NF A L H+R + + F+CD C + F T
Sbjct: 31 GQKPFQCRIC---MRNFSQQASLNAHIRTHTGEKPFACDICGRKFAT 74
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 31/100 (31%)
Query: 1343 EKKYVCEI--CGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSD 1400
E+ Y C + C + F+Q + H H+ ++ F+C C F
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF----------------- 44
Query: 1401 VKHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKF 1440
+ + +L +H++ H+ +P CD+C KF
Sbjct: 45 ------------SQQASLNAHIRTHTGEKPFACDICGRKF 72
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 535 VKSEVQILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCF 586
+ + ++I G + ++C +C R ++ + H H+GE+ + C IC + F
Sbjct: 22 LDTHIRIHTGQK-PFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C SR L +H+R+HTG+KPF C++C ++F+ +HL H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+ C++CGR S K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F R + L H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHINAQ 2031
K + C+ CG F H H+ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F + + LT H R H G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHI-RIH------------------TGQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
SR D L H+R HTGEKPF+C +CG+ FA + KRH IH++
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 606 MARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVA 665
+R+ D+ + I G ++C IC F+R D L H+RTHTG++P+ CD+CG+ F
Sbjct: 16 FSRSADLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 666 KKHLNRH 672
RH
Sbjct: 75 SDERKRH 81
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F+R L H+R HTG +P+ C +C ++F HL H +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 684 CNICGRVMSDSTNFKDHLDNHKGEK 708
C+ICGR + S K H H +K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F L RH +QC IC R S S + H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R Y CP C F R L H+ HTG+KP+ C C ++F L H K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEK 404
+ C ICG + + K H H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 1314 MKVGYQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
M+ Y C V C R + S++L H+R HTG+K + C IC + F++ H TH+ E
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1372 RSFKCSYCAMTFRCPRTLTEHKKTHV 1397
+ F C C F H K H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + ++L +H+ +HTG+K F C +C R NF+
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMR------------------NFSR 46
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
DH L H+ +HTGEKP+ C+ CG+ F
Sbjct: 47 SDH--------------------------------LTTHIRTHTGEKPFACDICGRKF 72
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 374 LGKGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
+ + Y C + C S +A+ H+ H G+K + C C F+ L H TH +
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVH 456
+ + C C RK+ K H K+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 1994
L H+ IH+G+K + C IC + F R L H++ H + F C +C R F K
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 80
Query: 1995 HMRIHTGEK 2003
H +IH +K
Sbjct: 81 HTKIHLRQK 89
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + ++ H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1543 VCQQCGASFTQ 1553
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + ++ H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1667 VCQQCGASFTQ 1677
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F +L THIRTH +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C RH H Q
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ +L H+ +H+ + C IC ++F + D L H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTKPK 1833
C F +H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ ++ H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F RH KIH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ L H+ HTGEK F C +C R F + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F + L H+ +H+ +PF C C F HL H RTHT K F+
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACD 66
Query: 1842 KCEESFDNCNNLWSHMFIKHENSD 1865
C F + H I D
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQKD 90
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 707 EKKYTCEI--CGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGD 764
E+ Y C + C F ++ FQC C + + L H +TH +G+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGE 60
Query: 765 IKHICDTCGSEFNTRKNMLRHTKVH 789
CD CG +F RHTK+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1634 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
+ +PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1692 RNQKCE 1697
+ C+
Sbjct: 61 KPFACD 66
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1510 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+ +PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ + L H H + + C C R + L H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ ++ RH ++H+ ++P+ C C +F L H + H G
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIR 1975
G F+C C L H+ H+GEK +AC IC + F R + H K +H + +
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Query: 1976 D 1976
D
Sbjct: 90 D 90
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1371 ERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
ER + C C F LT H + H C C ++ +L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1429 RPHQCDVCNAKF 1440
+P CD+C KF
Sbjct: 61 KPFACDICGRKF 72
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 1172 SDREKYKLVEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLT 1231
+D ++ + Q ++C C + ++R L H+ H GE+ +C +C + F +
Sbjct: 20 ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 1232 EHYK 1235
H K
Sbjct: 80 RHTK 83
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 71 GEIKFQCPDCHTMMKNFA---YLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYK 123
G+ FQC C M+NF+ +L H+R H+GE F+CD C + F + H K
Sbjct: 31 GQKPFQCRIC---MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C SR L +H+R+HTG+KPF C++C ++F+ +HL H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+ C++CGR S K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F R + L H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHINAQ 2031
K + C+ CG F H H+ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F + + LT H R H G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHI-RIH------------------TGQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
SR D L H+R HTGEKPF+C +CG+ FA + KRH IH++
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F+R L H+R HTG +P+ C +C ++F HL H +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 684 CNICGRVMSDSTNFKDHLDNHKGEK 708
C+ICGR + S K H H +K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 614 KSAEISV-----DGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKH 668
+SAE++ G ++C IC F+R D L H+RTHTG++P+ CD+CG+ F
Sbjct: 18 RSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 669 LNRH 672
RH
Sbjct: 78 RKRH 81
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F L RH +QC IC R S S + H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R Y CP C F R L H+ HTG+KP+ C C ++F L H K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEK 404
+ C ICG + + K H H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 1314 MKVGYQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
M+ Y C V C R + S+ L H+R HTG+K + C IC + F++ H TH+ E
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1372 RSFKCSYCAMTFRCPRTLTEHKKTHV 1397
+ F C C F H K H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + +EL +H+ +HTG+K F C +C R NF+
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMR------------------NFSR 46
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
DH L H+ +HTGEKP+ C+ CG+ F
Sbjct: 47 SDH--------------------------------LTTHIRTHTGEKPFACDICGRKF 72
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 1994
L H+ IH+G+K + C IC + F R L H++ H + F C +C R F K
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 80
Query: 1995 HMRIHTGEK 2003
H +IH +K
Sbjct: 81 HTKIHLRQK 89
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 374 LGKGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
+ + Y C + C S +A H+ H G+K + C C F+ L H TH +
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVH 456
+ + C C RK+ K H K+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1543 VCQQCGASFTQ 1553
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + + H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1667 VCQQCGASFTQ 1677
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F +L THIRTH +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C RH H Q
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ L H+ +H+ + C IC ++F + D L H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTKPK 1833
C F +H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ ++ H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F RH KIH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ L H+ HTGEK F C +C R F + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F + L H+ +H+ +PF C C F HL H RTHT K F+
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACD 66
Query: 1842 KCEESFDNCNNLWSHMFIKHENSD 1865
C F + H I D
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQKD 90
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 707 EKKYTCEI--CGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGD 764
E+ Y C + C F ++ FQC C + + L H +TH +G+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGE 60
Query: 765 IKHICDTCGSEFNTRKNMLRHTKVH 789
CD CG +F RHTK+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1634 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
+ +PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1692 RNQKCE 1697
+ C+
Sbjct: 61 KPFACD 66
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1510 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+ +PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ + L H H + + C C R + L H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ + RH ++H+ ++P+ C C +F L H + H G
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIR 1975
G F+C C L H+ H+GEK +AC IC + F R + H K +H + +
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Query: 1976 D 1976
D
Sbjct: 90 D 90
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1371 ERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
ER + C C F LT H + H C C ++ +L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1429 RPHQCDVCNAKF 1440
+P CD+C KF
Sbjct: 61 KPFACDICGRKF 72
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1180 VEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
+ Q ++C C + ++R L H+ H GE+ +C +C + F + H K
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 71 GEIKFQCPDCHTMMKNFA---YLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYK 123
G+ FQC C M+NF+ +L H+R H+GE F+CD C + F + H K
Sbjct: 31 GQKPFQCRIC---MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C S+ SL +H+R+HTG+KPF C++C ++F+ +HL H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+ C++CGR S K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F Q LT H R H G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI-RIH------------------TGQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
SR D L H+R HTGEKPF+C +CG+ FA + KRH IH++
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F + +L H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHINAQ 2031
K + C+ CG F H H+ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F++ SL H+R HTG +P+ C +C ++F HL H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 684 CNICGRVMSDSTNFKDHLDNHKGEK 708
C+ICGR + S K H H +K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 23/101 (22%)
Query: 574 ERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHIC 631
ER Y C + C + F L+ H R +H G ++C IC
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IH--------------------TGQKPFQCRIC 40
Query: 632 DSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
F+R D L H+RTHTG++P+ CD+CG+ F RH
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F L RH +QC IC R S S + H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R Y CP C F + +L H+ HTG+KP+ C C ++F L H K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEK 404
+ C ICG + + K H H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 1314 MKVGYQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
M+ Y C V C R + S +L H+R HTG+K + C IC + F++ H TH+ E
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1372 RSFKCSYCAMTFRCPRTLTEHKKTHV 1397
+ F C C F H K H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 1920 FKCP--DCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDF 1977
+ CP C L H+ IH+G+K + C IC + F R L H++ H + F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 1978 QCKVCDRAFFDVYNLKLHMRIHTGEK 2003
C +C R F K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + L +H+ +HTG+K F C +C R NF+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMR------------------NFSR 46
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
DH L H+ +HTGEKP+ C+ CG+ F
Sbjct: 47 SDH--------------------------------LTTHIRTHTGEKPFACDICGRKF 72
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ G+L H+ +H+ + C IC ++F + D L H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTKPK 1833
C F +H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + ++ H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1543 VCQQCGASFTQ 1553
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + ++ H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1667 VCQQCGASFTQ 1677
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ +L H+++HT G C+ C F +L THIRTH +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C RH H Q
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 374 LGKGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
+ + Y C + C S + + H+ H G+K + C C F+ L H TH +
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVH 456
+ + C C RK+ K H K+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ +L H + H +G C C F+ ++ H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F RH KIH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ L H+ HTGEK F C +C R F + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F + L H+ +H+ +PF C C F HL H RTHT K F+
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACD 66
Query: 1842 KCEESFDNCNNLWSHMFIKHENSD 1865
C F + H I D
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQKD 90
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 1634 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
+ +PY C ++C S SL H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1692 RNQKCE 1697
+ C+
Sbjct: 61 KPFACD 66
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 707 EKKYTCEI--CGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGD 764
E+ Y C + C F ++ FQC C + + L H +TH +G+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGE 60
Query: 765 IKHICDTCGSEFNTRKNMLRHTKVH 789
CD CG +F RHTK+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1510 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+ +PY C ++C S SL H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ SL H H + + C C R + L H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ ++ RH ++H+ ++P+ C C +F L H + H G
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIR 1975
G F+C C L H+ H+GEK +AC IC + F R + H K +H + +
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Query: 1976 D 1976
D
Sbjct: 90 D 90
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 1371 ERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
ER + C C F +LT H + H C C ++ +L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1429 RPHQCDVCNAKF 1440
+P CD+C KF
Sbjct: 61 KPFACDICGRKF 72
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1180 VEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
+ Q ++C C + ++R L H+ H GE+ +C +C + F + H K
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 71 GEIKFQCPDCHTMMKNFA---YLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYK 123
G+ FQC C M+NF+ +L H+R H+GE F+CD C + F + H K
Sbjct: 31 GQKPFQCRIC---MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 10/151 (6%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYNKWHLG 375
++Y C C +++ + LQ H+ HTGEKP+ C E C K F L H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 376 KGYRCHI--CGSTMSNAANFKDHLDSHRGEK--KYTC--ETCGTGFAYKSSLYHHRFTHI 429
K + C C + AN K H + K Y C E CG F + L H+F+H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 430 KDRTYPCTY--CERKYQSPKTLKEHLKVHTS 458
+ Y C + C++++ P LK H KVH
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 1267 CPSITSRYDSLQQHMRLHTGEKPFSC--QVCGKSFAAREHLKRHFNNIHMKVGYQCNV-- 1322
C + ++ LQ H+ HTGEKPF C + C K F + HL RH + + C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 1323 CGRVLTDSSNLKVHMRNHTGEK--KYVC--EICGKGFTQWASHYYHKFTHSEERSFKCSY 1378
C T +N+K H K YVC E CGK F + H+F+H+++ ++C +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 1379 --CAMTFRCPRTLTEHKKTHV 1397
C F P L H+K H
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHA 160
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 248 ECPRSYGNFSELKKHLAVHTGEKHFVC--SVCQRGFFMKNRLNEH-YKRVHHMNFT--SR 302
+C +Y +L+ HL HTGEK F C C++GF + L H NFT S
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 303 DHDLRRETETNVD---------GVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC- 352
DLR T+ N+ + Y C C +F++ N L+ H SHT + PY C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 353 -EACGKSFPLKRRLNAHYNKWHLG 375
E C K F L RL H K H G
Sbjct: 139 HEGCDKRFSLPSRLKRH-EKVHAG 161
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 26/133 (19%)
Query: 554 CDRIYTSFSETKRHFEVHSGERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTND 611
C++ +TS RH H+GE+ +TC C F K + +H+ R H +++ +
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV----- 104
Query: 612 VKKSAEISVDGVTKYKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKK 667
Y CH C F +++ L++H +HT PY C + C K F
Sbjct: 105 --------------YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPS 150
Query: 668 HLNRHYNCSHAGF 680
L RH HAG+
Sbjct: 151 RLKRHEK-VHAGY 162
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 13/167 (7%)
Query: 631 CDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKKHLNRHYNCSHAG---FGYQCN 685
C + + + L+ H+ HTG++P+ C + C K F + HL RH + +H G F +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSD 78
Query: 686 ICGRVMSDSTNFKDHLDNHKGEK--KYTC--EICGTGFMYXXXXXXXXXXXXXERMFQCS 741
C + N K H + K Y C E CG F + ++C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 742 F--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHT 786
C+K++ P LK HE+ H K D+C T L+H
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKD-DSCSFVGKTWTLYLKHV 184
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 432 RTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSE--FHTRKNLLTHIRTHNT 487
+ Y C++ C Y L+ HL HT G+ C+ G E F + +L H TH
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHT-GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 488 DRTHVCEL--CNANLKTRRSLLRHYTT-HGTQLAAIA--FNNSQSSSSDHRLVKSEVQIL 542
++ C+ C+ T+ ++ +H+ H ++ F N + H +K Q
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFS 128
Query: 543 EGDRIKYKCP--LCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRV 599
++ Y+CP CD+ ++ S KRH +VH+G Y C C F+ + + + V
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHV 184
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 1946 KDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTG 2001
K Y C C + ++ L+ H+ H + F CK C++ F +++L H HTG
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 2002 EKKYVCET--CGASFVHWGSLNIHNYSHINAQ---FVCSF--CGNTYKNPKSLDSHIRNS 2054
EK + C++ C F ++ H N + +VC F CG +K L H + S
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFS 128
Query: 2055 HTNRKKSIC--DDCTKAMSTPA 2074
HT + C + C K S P+
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPS 150
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 35/176 (19%)
Query: 1664 KKYVCQ--QCGASFTQWASLFYHKFSHS-----ETRNQKCEESFDNCNNLWSHMFIKHED 1716
K+Y+C CGA++ + L H H+ + + CE+ F + ++L H +
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 1717 SDFVCNLCPPDSKIVIKYAHLLERHMKKHHTMQQRCVCSYCGNSYANPGNLRTHMVVHSN 1776
+F C+ D + K +++H + H ++ +C Y V H
Sbjct: 71 KNFTCDSDGCDLRFTTKAN--MKKHFNRFHNIK---ICVY---------------VCHF- 109
Query: 1777 KNHICEICGKSFKKKDLLREHMIVHSTLRPFLC--EFCNAGFKCRKHLLQHYRTHT 1830
E CGK+FKK + L+ H H+ P+ C E C+ F L +H + H
Sbjct: 110 -----ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 1777 KNHICEI--CGKSFKKKDLLREHMIVHSTLRPFLC--EFCNAGFKCRKHLLQHYRTHTKP 1832
K +IC CG ++ K L+ H+ H+ +PF C E C GF HL +H THT
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 1833 KATNSFSSSKCEESFDNCNNLWSHM 1857
K + S C+ F N+ H
Sbjct: 71 K-NFTCDSDGCDLRFTTKANMKKHF 94
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 71 GEIKFQCPD--CHTMMKNFAYLKKHVRDNHSGETFSCDE--CSKSFTTKKCLREHYKKLH 126
GE F C + C + +L +H + + F+CD C FTTK +++H+ + H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Query: 127 TIRIRSSREENDMKKKTMVYVEGVVKYKCPECGFMVKRFQGLREHIVSVHAQVKDHVCI- 185
I+I VYV CG K+ L+ H S H Q + C
Sbjct: 99 NIKI-------------CVYVCHF-----ENCGKAFKKHNQLKVHQFS-HTQQLPYECPH 139
Query: 186 -VCGAAFGLARRLKTH 200
C F L RLK H
Sbjct: 140 EGCDKRFSLPSRLKRH 155
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 19/186 (10%)
Query: 1504 QRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWASLFY 1559
++++ + K Y C CG + L H HTGEK + C++ C FT L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 1560 HKFSHSETRNQKHVSASSCHQKVPNKSVTAKFKALFTERXXXXXXXXXIYECDI--CKKQ 1617
H +H+ +N + C + K+ K F +Y C C K
Sbjct: 63 HSLTHTGEKNFT-CDSDGCDLRFTTKANMKKHFNRF------HNIKICVYVCHFENCGKA 115
Query: 1618 VTNRKNMIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTG---EKKYVCQQCG 1672
+ HQ S H PYEC + C S L H ++H G +K C G
Sbjct: 116 FKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVG 174
Query: 1673 ASFTQW 1678
++T +
Sbjct: 175 KTWTLY 180
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
Length = 119
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 1265 PLCPSITSRYDSLQQHMRLHTGEKPFSCQV--CGKSFAAREHLKRHFNNIHMKVGYQCNV 1322
P C + LQ H R HTGEKP+ C C + F+ + LKRH +QC
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 1323 CGRVLTDSSNLKVHMRNHTGEKKYVCEI--CGKGFTQ 1357
C R + S +LK H R HTGEK + C C K F +
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 25/127 (19%)
Query: 552 PLCDRIYTSFSETKRHFEVHSGERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMART 609
P C++ Y S + H H+GE+ Y C C + F ++L H RR
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH---------- 61
Query: 610 NDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKK 667
GV ++C C F+R D L+ H RTHTG++P++C C K F
Sbjct: 62 -----------TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Query: 668 HLNRHYN 674
L RH+N
Sbjct: 111 ELVRHHN 117
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCE--ACGKSFPLKRRLNAHYNKWHLG 375
R + C +PGC + + + LQ H HTGEKPY C+ C + F +L H +
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 376 KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCE--TCGTGFAYKSSLYHH 424
K ++C C S + + K H +H GEK ++C +C FA L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 1923 PDCPTILQTFRGLKAHLDIHSGEKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCK 1980
P C L+ H H+GEK Y C C + F R L+ H + H ++ FQCK
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCK 70
Query: 1981 VCDRAFFDVYNLKLHMRIHTGEKKYVCE--TCGASFVHWGSLNIHNYSH 2027
C R F +LK H R HTGEK + C +C F L H+ H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 631 CDSIFTRYDSLRLHVRTHTGDRPYTCDV--CGKSFVAKKHLNRHYNCSHAGF-GYQCNIC 687
C+ + + L++H R HTG++PY CD C + F L RH H G +QC C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTC 72
Query: 688 GRVMSDSTNFKDHLDNHKGEKKYTC 712
R S S + K H H GEK ++C
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 1192 CDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLK 1249
C+K Y + L+ H H GE+ C C++ F + +L H +R
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH------------ 61
Query: 1250 KKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQ--VCGKSFAAREHLKR 1307
G ++C C SR D L+ H R HTGEKPFSC+ C K FA + L R
Sbjct: 62 -------TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR 114
Query: 1308 HFN 1310
H N
Sbjct: 115 HHN 117
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 28/138 (20%)
Query: 239 GEKVKFKC--PECPRSYGNFSELKKHLAVHTGEKHFVCSV--CQRGFFMKNRLNEHYKRV 294
EK F C P C + Y S L+ H HTGEK + C C+R F ++L H +R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR- 60
Query: 295 HHMNFTSRDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCE- 353
GV+ ++C C F R + L+ H +HTGEKP++C
Sbjct: 61 -------------------HTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCRW 99
Query: 354 -ACGKSFPLKRRLNAHYN 370
+C K F L H+N
Sbjct: 100 PSCQKKFARSDELVRHHN 117
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
E+ +QC F CE+++ LK H++ H +G C TC +F+ ++ HT+ H+ E
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 793 RPYICEY--CNVSFKEKKSLVRHYKIH 817
+P+ C + C F LVRH+ +H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 1287 EKPFSCQV--CGKSFAAREHLKRHFNNIHMKVGYQCNV--CGRVLTDSSNLKVHMRNHTG 1342
++PF C C K + HL+ H + YQC+ C R + S LK H R HTG
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 1343 EKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSY 1378
K + C+ C + F++ H TH+ E+ F C +
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRW 99
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y+CD C+++ + + HQR H +KP++C TC S L H R HTGEK +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Query: 1543 VCQ--QCGASFTQWASLFYH 1560
C+ C F + L H
Sbjct: 96 SCRWPSCQKKFARSDELVRH 115
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y+CD C+++ + + HQR H +KP++C TC S L H R HTGEK +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Query: 1667 VCQ--QCGASFTQWASLFYH 1684
C+ C F + L H
Sbjct: 96 SCRWPSCQKKFARSDELVRH 115
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 1753 VCSY--CGNSYANPGNLRTHMVVHSN-KNHICEI--CGKSFKKKDLLREHMIVHSTLRPF 1807
+C+Y C Y +L+ H H+ K + C+ C + F + D L+ H H+ ++PF
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 1808 LCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSSKCEESFDNCNNLWSH 1856
C+ C F HL H RTHT K + S C++ F + L H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS-CQKKFARSDELVRH 115
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 411 CGTGFAYKSSLYHHRFTHIKDRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTC 468
C + S L H H ++ Y C + CER++ LK H + HT G C+TC
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-GVKPFQCKTC 72
Query: 469 GSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRS--LLRHYTTH 513
+F +L TH RTH ++ C + K RS L+RH+ H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICD--TCGSEFNTRKNMLRHTKVHS 790
+R F C++ C K+Y L+ H + H +G+ + CD C F+ + RH + H+
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 791 TERPYICEYCNVSFKEKKSLVRHYKIHKG 819
+P+ C+ C F L H + H G
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTG 91
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 383 CGSTMSNAANFKDHLDSHRGEKKYTCE--TCGTGFAYKSSLYHHRFTHIKDRTYPCTYCE 440
C ++ + H H GEK Y C+ C F+ L H+ H + + C C+
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 441 RKYQSPKTLKEHLKVHTSGDVRHICQ--TCGSEFHTRKNLLTHIRTH 485
RK+ LK H + HT G+ C+ +C +F L+ H H
Sbjct: 74 RKFSRSDHLKTHTRTHT-GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 1632 HELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
H KPY+CD C S L H R HTG K + C+ C F++ L H +H+
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 1690 ET-----RNQKCEESFDNCNNLWSH 1709
R C++ F + L H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRH 115
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1508 HELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
H KPY+CD C S L H R HTG K + C+ C F++ L H +H+
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHI--CNKVFVRHSTLENH 1966
G F+C C LK H H+GEK ++C C K F R L H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 772 CGSEFNTRKNMLRHTKVHSTERPYICEY--CNVSFKEKKSLVRHYKIHKGV 820
C + ++ H++ H+ E+PY C++ C F L RH + H GV
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding
Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2
Length = 96
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCN 1321
+KC +C SR D L+ HMR HTG KP+ C+ C + A L +H + ++C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 1322 VCGRVLTDSSNLKVHMRNHTGE 1343
+C +SS L VH+R+HTG+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 1950 CHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCET 2009
C +C K F R L+ HM+ H ++ ++CK CD A D +L H+RIH+ E+ + C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 2010 CGASFVHWGSLNIHNYSHIN 2029
C + + L +H SH
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCS 1377
++C VCG+ + LK HMR HTG K Y C+ C +S H HS+ER FKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 1378 YCAMTFRCPRTLTEHKKTHV 1397
C R LT H ++H
Sbjct: 69 ICPYASRNSSQLTVHLRSHT 88
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCN 685
+KC +C F+R D L+ H+R HTG +PY C C + LN+H ++C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 686 ICGRVMSDSTNFKDHLDNHKGE 707
IC +S+ HL +H G+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1921 KCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCK 1980
KC C LK H+ H+G K Y C C+ S+L H++ +H R F+C+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQ 68
Query: 1981 VCDRAFFDVYNLKLHMRIHTGE 2002
+C A + L +H+R HTG+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 1978 QCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ-FVCSF 2036
+C+VC + F LK HMR HTG K Y C+TC + SLN H H + + F C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 2037 CGNTYKNPKSLDSHIRNSHTN 2057
C +N L H+R SHT
Sbjct: 70 CPYASRNSSQLTVHLR-SHTG 89
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1544
++C++C K + + + H R H +KPY+C TC + + SL+ H RIH+ E+ + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 1545 QQCGASFTQWASLFYHKFSHS 1565
Q C + + L H SH+
Sbjct: 68 QICPYASRNSSQLTVHLRSHT 88
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1668
++C++C K + + + H R H +KPY+C TC + + SL+ H RIH+ E+ + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 1669 QQCGASFTQWASLFYHKFSHS 1689
Q C + + L H SH+
Sbjct: 68 QICPYASRNSSQLTVHLRSHT 88
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 1289 PFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVC 1348
P C+VCGK F+ ++ LK H Y+C C DSS+L H+R H+ E+ + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 1349 EIC 1351
+IC
Sbjct: 68 QIC 70
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCT 437
++C +CG S K H+ H G K Y C+TC A SSL H H +R + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 438 YCERKYQSPKTLKEHLKVHTSGD 460
C ++ L HL+ HT GD
Sbjct: 69 ICPYASRNSSQLTVHLRSHT-GD 90
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 653 PYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEKKYTC 712
P+ C+VCGK F K L H C Y+C C +DS++ HL H E+ + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 713 EIC 715
+IC
Sbjct: 68 QIC 70
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1775 SNKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKA 1834
S+ H CE+CGK F +KD L+ HM H+ ++P+ C+ C+ L +H R H+ +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 1835 TNSFSSSKCEESFDNCNNLWSHM 1857
F C + N + L H+
Sbjct: 65 ---FKCQICPYASRNSSQLTVHL 84
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 1754 CSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFC 1812
C CG ++ L+THM H+ K + C+ C + L +H+ +HS RPF C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 1813 NAGFKCRKHLLQHYRTHTKPKATNS 1837
+ L H R+HT +S
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 327 CPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGST 386
C F R + L+ HM HTG KPY C+ C + LN H + ++C IC
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYA 73
Query: 387 MSNAANFKDHLDSHRGE 403
N++ HL SH G+
Sbjct: 74 SRNSSQLTVHLRSHTGD 90
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 349 PYTCEACGKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTMSNAANFKDHLDSHRGEKKYT 407
P+ CE CGK F K +L H + H G K Y+C C +++++ HL H E+ +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 408 CETCGTGFAYKSSLYHHRFTHIKD 431
C+ C S L H +H D
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGD 90
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 22/101 (21%)
Query: 579 CSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRY 638
C +C KCF K++L H R H GV YKC CD
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHT--------------------GVKPYKCKTCDYAAADS 49
Query: 639 DSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAG 679
SL H+R H+ +RP+ C +C + L H SH G
Sbjct: 50 SSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SHTG 89
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 1637 PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQKC 1696
P++C+ CG S K L H R HTG K Y C+ C + +SL H HS+ R KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 1697 E 1697
+
Sbjct: 68 Q 68
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 1181 EGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSHRM 1240
G +KC C K ++R +LK H+ H G + C CD + S L +H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH------- 55
Query: 1241 KVTRVNQLKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGE 1287
L+ S+ E +KC +CP + L H+R HTG+
Sbjct: 56 -------LRIHSD-----ERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 408 CETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHI-CQ 466
CE CG F+ K L H H + Y C C+ +L +HL++H+ D R CQ
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS--DERPFKCQ 68
Query: 467 TCGSEFHTRKNLLTHIRTHNTD 488
C L H+R+H D
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 739 QCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICE 798
+C C K + LK H + H +G + C TC ++ +H ++HS ERP+ C+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 799 YCNVSFKEKKSLVRHYKIHKG 819
C + + L H + H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 1513 PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETR 1568
P++C+ CG S K L H R HTG K Y C+ C + +SL H HS+ R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 767 HICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIH 817
H C+ CG F+ + + H + H+ +PY C+ C+ + + SL +H +IH
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Query: 543 EGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKM 602
G +KC +C + ++ + K H H+G + Y C C + L++H R
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 603 RVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGD 651
R +KC IC L +H+R+HTGD
Sbjct: 63 R---------------------PFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 22/110 (20%)
Query: 238 QGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHM 297
G KC C + + +LK H+ HTG K + C C + LN+H R+H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSD 61
Query: 298 NFTSRDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGE 347
R +KC CP + + + L H+ SHTG+
Sbjct: 62 E-------------------RPFKCQI--CPYASRNSSQLTVHLRSHTGD 90
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 436 CTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCEL 495
C C + + LK H++ HT G + C+TC +L H+R H+ +R C++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHT-GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 496 CNANLKTRRSLLRHYTTH 513
C + L H +H
Sbjct: 70 CPYASRNSSQLTVHLRSH 87
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 182 HVCIVCGAAFGLARRLKTHYIRRHT---VNILTQANHDNEDKLDVTKIFNVNKEDCQIMQ 238
H C VCG F +LKTH +R HT ++ D + K ++ ++
Sbjct: 9 HKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE----- 62
Query: 239 GEKVKFKCPECPRSYGNFSELKKHLAVHTGE 269
FKC CP + N S+L HL HTG+
Sbjct: 63 ---RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 27/110 (24%)
Query: 1430 PHQCDVCNAKFKLRKYLKHVSASSCHQKVPNKSVTAKFKALFTERXXXXXXXXXIYECDI 1489
PH+C+VC F + LK + CH V Y+C
Sbjct: 8 PHKCEVCGKCFSRKDKLK--THMRCHTGV------------------------KPYKCKT 41
Query: 1490 CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
C + ++ H R +H +P++C C + + L H R HTG+
Sbjct: 42 CDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 463 HICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTH 513
H C+ CG F + L TH+R H + + C+ C+ SL +H H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKA 1969
G +KC C L HL IHS E+ + C IC S L H+++
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 1399 SDVKHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCN 1437
S H C CG ++ + L +HM+ H+ +P++C C+
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD 43
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
Y+C C + ++ H R +H +P++C C + + L H R HTG+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C S +L +H+R+HTG+KPF C++C ++F+ +HL H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+ C++CGR S K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 1287 EKPFSCQV--CGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
E+P++C V C + F+ +L RH + +QC +C R + S +L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 1345 KYVCEICGKGFTQWASHYYHKFTHSEER 1372
+ C+ICG+ F + H H ++
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F S LT H R H G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHI-RIH------------------TGQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
SR D L H+R HTGEKPF+C +CG+ FA + KRH IH++
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLR 87
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F S L H++ +H + FQC++C R F +L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHINAQ 2031
K + C+ CG F H H+ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 1314 MKVGYQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
M+ Y C V C R +DSSNL H+R HTG+K + C IC + F++ H TH+ E
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1372 RSFKCSYCAMTFRCPRTLTEHKKTHV 1397
+ F C C F H K H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 23/101 (22%)
Query: 574 ERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHIC 631
ER Y C + C + F + L+ H R +H G ++C IC
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHT--------------------GQKPFQCRIC 40
Query: 632 DSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
F+R D L H+RTHTG++P+ CD+CG+ F RH
Sbjct: 41 MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F +L RH +QC IC R S S + H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F+ +L H+R HTG +P+ C +C ++F HL H +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 684 CNICGRVMSDSTNFKDHLDNHKGEK 708
C+ICGR + S K H H +K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 347 EKPYTC--EACGKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTMSNAANFKDHLDSHRGE 403
E+PY C E+C + F L H + H G K ++C IC S + + H+ +H GE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 404 KKYTCETCGTGFAYKSSLYHHRFTHIKDR 432
K + C+ CG FA H H++ +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R Y CP C F + L H+ HTG+KP+ C C ++F L H K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEK 404
+ C ICG + + K H H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + + S L +H+ +HTG+K F C +C R NF+
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMR------------------NFSR 46
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
DH L H+ +HTGEKP+ C+ CG+ F
Sbjct: 47 SDH--------------------------------LTTHIRTHTGEKPFACDICGRKF 72
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ ++ N+ H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1543 VCQQCGASFTQ 1553
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ ++ N+ H R +H KP++C C S L H R HTGEK +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 1667 VCQQCGASFTQ 1677
C CG F +
Sbjct: 64 ACDICGRKFAR 74
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 374 LGKGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
+ + Y C + C S+++N H+ H G+K + C C F+ L H TH +
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVH 456
+ + C C RK+ K H K+H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 1920 FKCP--DCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDF 1977
+ CP C L H+ IH+G+K + C IC + F R L H++ H + F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 1978 QCKVCDRAFFDVYNLKLHMRIHTGEK 2003
C +C R F K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C +++ NL H+ +H+ + C IC ++F + D L H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTKPK 1833
C F +H + H + K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F +L THIRTH +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C RH H Q
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ ++ H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F RH KIH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 31/110 (28%)
Query: 682 YQCNI--CGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQ 739
Y C + C R SDS+N H+ H G+K FQ
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKP----------------------------FQ 36
Query: 740 CSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVH 789
C C + + L H +TH +G+ CD CG +F RHTK+H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ L H+ HTGEK F C +C R F + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F L H+ +H+ +PF C C F HL H RTHT K F+
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACD 66
Query: 1842 KCEESFDNCNNLWSHMFI 1859
C F + H I
Sbjct: 67 ICGRKFARSDERKRHTKI 84
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 1634 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
+ +PY C ++C S +L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1692 RNQKCE 1697
+ C+
Sbjct: 61 KPFACD 66
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1510 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+ +PY C ++C S +L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ S+L H H + + C C R + L H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ N+ RH ++H+ ++P+ C C +F L H + H G
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIR 1975
G F+C C L H+ H+GEK +AC IC + F R + H K +H + +
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Query: 1976 D 1976
D
Sbjct: 90 D 90
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1371 ERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
ER + C C F LT H + H C C ++ +L +H++ H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 1429 RPHQCDVCNAKF 1440
+P CD+C KF
Sbjct: 61 KPFACDICGRKF 72
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 34/109 (31%)
Query: 1694 QKCEESFDNCNNLWSHMFIKHEDSDFVCNLCPPDSKIVIKYAHLLERHMKKHHTMQQRCV 1753
+ C+ F + +NL H+ I HT Q+
Sbjct: 10 ESCDRRFSDSSNLTRHIRI---------------------------------HTGQKPFQ 36
Query: 1754 CSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVH 1801
C C +++ +L TH+ H+ K C+ICG+ F + D + H +H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
++C IC + + ++ H R+ H KP+ CD CG + H +IH +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1180 VEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
+ Q ++C C + ++R L H+ H GE+ +C +C + F + H K
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1407 TCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYL 1446
+C ++ NL H++IH+ +P QC +C F +L
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHL 50
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 71 GEIKFQCPDCHTMMKNFA---YLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYK 123
G+ FQC C M+NF+ +L H+R H+GE F+CD C + F + H K
Sbjct: 31 GQKPFQCRIC---MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTK 83
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 1947 DYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYV 2006
+ C IC K F R STL H+ +H R + C+ C + F ++K H IHTGEK +
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 2007 CETCGASFVHWGSLNIHNYSHIN 2029
C+ CG +F +L H+ H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCN 1321
+ C +C R +L H+ +H+ +P+ CQ CGK F + +K+H + ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1322 VCGRVLTDSSNLKVHMRNHTG 1342
VCG+ + SSNL H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1754 CSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFC 1812
C CG S+ L TH+++HS+ + + C+ CGK F +K +++H +H+ +P C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 1813 NAGFKCRKHLLQHYRTHT 1830
F +L+ H R HT
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 1290 FSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCE 1349
F C++CGKSF L H Y C CG+ S++K H HTGEK + C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1350 ICGKGFTQWASHYYHKFTHS 1369
+CGK F+Q ++ H H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCN 685
+ C IC F R +L H+ H+ RPY C CGK F K + +H ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 686 ICGRVMSDSTNFKDHLDNHKG 706
+CG+ S S+N H H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1544
++C IC K R + + +H +PY C CG K + H IHTGEK + C
Sbjct: 2 FDCKICGKSF-KRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 1545 QQCGASFTQWASLFYHKFSHS 1565
Q CG +F+Q ++L H H+
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1668
++C IC K R + + +H +PY C CG K + H IHTGEK + C
Sbjct: 2 FDCKICGKSF-KRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 1669 QQCGASFTQWASLFYHKFSHS 1689
Q CG +F+Q ++L H H+
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCS 1377
+ C +CG+ SS L H+ H+ + Y C+ CGK F Q + H F H+ E+ KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1378 YCAMTFRCPRTLTEHKKTHV 1397
C F L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 738 FQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYIC 797
F C C K + TL H H S + C CG F+ + +M +HT +H+ E+P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 798 EYCNVSFKEKKSLVRHYKIHKG 819
+ C +F + +L+ H + H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 327 CPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGST 386
C SF+R + L H+L H+ +PY C+ CGK F K + H K ++C +CG
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKA 66
Query: 387 MSNAANFKDHLDSHRG 402
S ++N H H G
Sbjct: 67 FSQSSNLITHSRKHTG 82
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1781 CEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
C+ICGKSFK+ L H+++HS RP+ C++C F + + +H HT K
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP---HKC 60
Query: 1841 SKCEESFDNCNNLWSH 1856
C ++F +NL +H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 1920 FKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQC 1979
F C C + L HL IHS + Y C C K F + S ++ H +H + +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 1980 KVCDRAFFDVYNLKLHMRIHTG 2001
+VC +AF NL H R HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 1346 YVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVC 1405
+ C+ICGK F + ++ H HS+ R + C YC F + +H H + H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT-GEKPHKC 60
Query: 1406 NTCGNEYNTRKNLLSHMKIHS 1426
CG ++ NL++H + H+
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCT 437
+ C ICG + ++ HL H + Y C+ CG F KS + H F H ++ + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 438 YCERKYQSPKTLKEHLKVHTS 458
C + + L H + HT
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQKCE 1697
++C CG +L H IH+ + Y CQ CG F Q + + H F H+ + KC+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1698 ---ESFDNCNNLWSH 1709
++F +NL +H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 433 TYPCTYCERKYQSPKTLKEHLKVHTSGDVR-HICQTCGSEFHTRKNLLTHIRTHNTDRTH 491
++ C C + ++ TL HL +H+ D R + CQ CG FH + ++ H H ++ H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHS--DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 492 VCELCNANLKTRRSLLRHYTTH 513
C++C +L+ H H
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKH 80
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 1214 TMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETK-YKCPLCPSITS 1272
+ C +C KSF + S L+ H + I +T+ Y C C
Sbjct: 1 SFDCKICGKSFKRSSTLSTH--------------------LLIHSDTRPYPCQYCGKRFH 40
Query: 1273 RYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRH 1308
+ +++H +HTGEKP CQVCGK+F+ +L H
Sbjct: 41 QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 710 YTCEICGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHIC 769
+ C+ICG F R + C +C K++ +K+H H +G+ H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHKC 60
Query: 770 DTCGSEFNTRKNMLRHTKVHS 790
CG F+ N++ H++ H+
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 1373 SFKCSYCAMTFRCPRTLTEHKKTHVLSDVK-HVCNTCGNEYNTRKNLLSHMKIHSTGRPH 1431
SF C C +F+ TL+ H H SD + + C CG ++ + ++ H IH+ +PH
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIH--SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 1432 QCDVCNAKF 1440
+C VC F
Sbjct: 59 KCQVCGKAF 67
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 1179 LVEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKR 1236
L+ D Y C C K + + ++K H +H GE+ C +C K+F Q S L H ++
Sbjct: 22 LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 317 VRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNK 371
R Y C + C F + + +++H HTGEKP+ C+ CGK+F L H K
Sbjct: 27 TRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1514 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQK 1571
++C CG +L H IH+ + Y CQ CG F Q + + H F H+ + K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 549 YKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMAR 608
+ C +C + + S H +HS R Y C C K F K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK------------------- 42
Query: 609 TNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTG 650
+D+KK I G +KC +C F++ +L H R HTG
Sbjct: 43 -SDMKKHTFIHT-GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 541 ILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRR 598
++ D Y C C + + S+ K+H +H+GE+ + C +C K F + L H R+
Sbjct: 22 LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 236 IMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKR 293
++ + + C C + + S++KKH +HTGEK C VC + F + L H ++
Sbjct: 22 LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 40/121 (33%)
Query: 1542 YVCQQCGASFTQWASLFYHKFSHSETRNQKHVSASSCHQKVPNKSVTAKFKALFTERXXX 1601
+ C+ CG SF + ++L H HS+TR
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-------------------------------- 29
Query: 1602 XXXXXXIYECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHT 1661
Y C C K+ + +M H +H KP++C CG S +L H R HT
Sbjct: 30 -------YPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Query: 1662 G 1662
G
Sbjct: 82 G 82
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTG 1538
Y C C K+ + +M H +H KP++C CG S +L H R HTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 26/101 (25%)
Query: 1405 CNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYLKHVSASSCHQKVPNKSVT 1464
C CG + L +H+ IHS RP+ C C +F HQK K T
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF--------------HQKSDMKKHT 49
Query: 1465 AKFKALFTERXXXXXXXXXIYECDICKKQVTNRKNMIDHQR 1505
++C +C K + N+I H R
Sbjct: 50 ------------FIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 2032 FVCSFCGNTYKNPKSLDSHIRNSHTNRKKSICDDCTKAMSTPAPSSKSVCIEHSNLIPKC 2091
F C CG ++K +L +H+ H++ + C C K + K I H+ P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKP-- 57
Query: 2092 HSCQKCEESFDNCNNLWSH 2110
H CQ C ++F +NL +H
Sbjct: 58 HKCQVCGKAFSQSSNLITH 76
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1666 YVCQQCGASFTQWASLFYHKFSHSETRN---QKCEESFDNCNNLWSHMFIKHEDSDFVCN 1722
+ C+ CG SF + ++L H HS+TR Q C + F +++ H FI + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1723 LC 1724
+C
Sbjct: 62 VC 63
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 153 YKCPECGFMVKRFQGLREHIVSVHAQVKDHVCIVCGAAFGLARRLKTHYIRRHT 206
Y C CG + +++H +H K H C VCG AF + L TH R+HT
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHS-RKHT 81
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 1696 CEESFDNCNNLWSHMFIKHEDSDFVCNLCPPDSKIVIKYAHLLERHMKKH---HTMQQRC 1752
C +SF + L +H+ I + + C C K H + MKKH HT ++
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCG-------KRFHQ-KSDMKKHTFIHTGEKPH 58
Query: 1753 VCSYCGNSYANPGNLRTHMVVHSN 1776
C CG +++ NL TH H+
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 1945 EKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
E+ YAC + C++ F + + L+ H++ +H + FQC++C R F L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 2003 KKYVCETCGASFVHWGSLNIHNYSHI 2028
K + C+ CG F + + H H+
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHL 86
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 1314 MKVGYQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
M+ Y C V C R + +NL H+R HTG+K + C IC + F+Q H TH+ E
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 1372 RSFKCSYCAMTFRCPRTLTEHKKTHV 1397
+ F C C F T H K H+
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHL 86
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 30/116 (25%)
Query: 1259 ETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
E Y CP+ C S+ +L H+R+HTG+KPF
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPF-------------------------- 35
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEER 1372
QC +C R + + L H+R HTGEK + C+ICG+ F + H H ++
Sbjct: 36 --QCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 651 DRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+RPY C V C + F K +L+ H +QC IC R S T H+ H GEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 709 KYTCEICGTGF 719
+ C+ICG F
Sbjct: 62 PFACDICGRKF 72
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 1212 ERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
ER +C + CD+ F Q + L H R H G+ ++C +C
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIH------------------TGQKPFQCRICMR 42
Query: 1270 ITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK 1315
S++ L QH+R HTGEKPF+C +CG+ FA RH IH++
Sbjct: 43 NFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRH-TKIHLR 87
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 1975 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQ- 2031
R + C V CDR F NL H+RIHTG+K + C C +F LN H +H +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 2032 FVCSFCGNTYKNPKSLDSHIR 2052
F C CG + + D H +
Sbjct: 63 FACDICGRKFATLHTRDRHTK 83
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 23/101 (22%)
Query: 574 ERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHIC 631
ER Y C + C + F K L H R +H G ++C IC
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHT--------------------GQKPFQCRIC 40
Query: 632 DSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
F+++ L H+RTHTG++P+ CD+CG+ F +RH
Sbjct: 41 MRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRH 81
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 347 EKPYTC--EACGKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTMSNAANFKDHLDSHRGE 403
E+PY C E+C + F K L+ H + H G K ++C IC S H+ +H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 404 KKYTCETCGTGFAYKSSLYHHRFTHIKDR 432
K + C+ CG FA + H H++ +
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 1994
L H+ IH+G+K + C IC + F +H+ L H++ H + F C +C R F ++
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFATLHTRDR 80
Query: 1995 HMRIHTGEK 2003
H +IH +K
Sbjct: 81 HTKIHLRQK 89
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ 683
Y C + CD F++ +L H+R HTG +P+ C +C ++F LN+H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 684 CNICGR 689
C+ICGR
Sbjct: 65 CDICGR 70
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 1485 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1542
Y C + C ++ + + N+ H R +H KP++C C S L+ H R HTGEK +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 1543 VCQQCGASFT 1552
C CG F
Sbjct: 64 ACDICGRKFA 73
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 1609 YECDI--CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 1666
Y C + C ++ + + N+ H R +H KP++C C S L+ H R HTGEK +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 1667 VCQQCGASFT 1676
C CG F
Sbjct: 64 ACDICGRKFA 73
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 374 LGKGYRCHI--CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKD 431
+ + Y C + C S N H+ H G+K + C C F+ + L H TH +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVH 456
+ + C C RK+ + T H K+H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 1634 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
+ +PY C ++C S K +LD H RIHTG+K + C+ C +F+Q L H +H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 1692 RNQKCE 1697
+ C+
Sbjct: 61 KPFACD 66
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1510 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+ +PY C ++C S K +LD H RIHTG+K + C+ C +F+Q L H +H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT 58
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 52/118 (44%)
Query: 244 FKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ CP C R + + L H+ +HTG+K F C +C R F LN+H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR--------- 55
Query: 302 RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSF 359
+HTGEKP+ C+ CG+ F
Sbjct: 56 -----------------------------------------THTGEKPFACDICGRKF 72
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 431 DRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTD 488
+R Y C C+R++ L H+++HT G C+ C F L HIRTH +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT-GQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 489 RTHVCELCNANLKTRRSLLRHYTTHGTQ 516
+ C++C T + RH H Q
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 1752 CVCSYCGNSYANPGNLRTHMVVHSNKNHI-CEICGKSFKKKDLLREHMIVHSTLRPFLCE 1810
C C ++ NL TH+ +H+ + C IC ++F + L +H+ H+ +PF C+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 1811 FCNAGFKCRKHLLQHYRTHTKPK 1833
C F +H + H + K
Sbjct: 67 ICGRKFATLHTRDRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 682 YQCNI--CGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQ 739
Y C + C R S TN H+ H G+K + C IC F E+ F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 740 CSFCEKKYMSPKTLKEHEQTH 760
C C +K+ + T H + H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 735 ERMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER + C C++++ L H + H +G C C F+ + +H + H+ E
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH-TGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 793 RPYICEYCNVSFKEKKSLVRHYKIH 817
+P+ C+ C F + RH KIH
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+I G+K F+C C R++ + L +H+ HTGEK F C +C R F + + H K
Sbjct: 27 RIHTGQK-PFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK 83
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 403 EKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
E+ Y C E+C F+ K++L H H + + C C R + L +H++ HT G+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT-GE 60
Query: 461 VRHICQTCGSEFHTRKNLLTHIRTH 485
C CG +F T H + H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSS 1841
E C + F +K L H+ +H+ +PF C C F L QH RTHT K F+
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP---FACD 66
Query: 1842 KCEESF 1847
C F
Sbjct: 67 ICGRKF 72
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIR 1975
G F+C C GL H+ H+GEK +AC IC + F T + H K +H + +
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK-IHLRQK 89
Query: 1976 D 1976
D
Sbjct: 90 D 90
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++C F+ + N+ H ++H+ ++P+ C C +F + L +H + H G
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
++C IC + + + H R+ H KP+ CD CG ++ + D H +IH +K
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
++C IC + + + H R+ H KP+ CD CG ++ + D H +IH +K
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 535 VKSEVQILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCF 586
+ + ++I G + ++C +C R ++ + +H H+GE+ + C IC + F
Sbjct: 22 LDTHIRIHTGQK-PFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 71 GEIKFQCPDCHTMMKNFAY---LKKHVRDNHSGETFSCDECSKSFTTKKCLREHYKKLH 126
G+ FQC C M+NF+ L +H+R + + F+CD C + F T R+ + K+H
Sbjct: 31 GQKPFQCRIC---MRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLH-TRDRHTKIH 85
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 31/100 (31%)
Query: 1343 EKKYVCEI--CGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSD 1400
E+ Y C + C + F+Q + H H+ ++ F+C C R ++H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICM------RNFSQHT------- 48
Query: 1401 VKHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKF 1440
L H++ H+ +P CD+C KF
Sbjct: 49 ----------------GLNQHIRTHTGEKPFACDICGRKF 72
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 1922 CP--DCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQC 1979
CP C + + ++ HL H G + + C C K FV S L+ H + VH + FQC
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQC 65
Query: 1980 KV--CDRAFFDVYNLKLHMRIHTGEKKYVC--ETCGASFVHWGSLNIHNYSHINAQ 2031
C + F +NL+ H+RIHTG++ YVC + C F +L H +H A+
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R CPH GC F+ +A+++H+ +H G + + C CGK+F +L H K
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 378 YRCHI--CGSTMSNAANFKDHLDSHRGEKKYTC--ETCGTGFAYKSSLYHHRFTHIKDR 432
++C CG S N + H+ H G++ Y C + C FA ++L H TH K +
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 30/127 (23%)
Query: 1323 CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMT 1382
C ++ D+S ++ H+ H G + +VC CGK F + + H+ H+ E+ F+C++
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF---- 67
Query: 1383 FRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQC--DVCNAKF 1440
CG ++ NL +H++IH+ RP+ C D CN KF
Sbjct: 68 -----------------------EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 1441 KLRKYLK 1447
LK
Sbjct: 105 AQSTNLK 111
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 383 CGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTY--CE 440
C + + + HL +H G + + C CG F S L H+ H ++ + CT+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 441 RKYQSPKTLKEHLKVHTSGDVRHIC--QTCGSEFHTRKNLLTHIRTH 485
+++ L+ H+++HT GD ++C C +F NL +HI TH
Sbjct: 72 KRFSLDFNLRTHVRIHT-GDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 1742 MKKH-HTMQQRC-VCSYCGNSYANPGNLRTHMVVHSNKNHI---CEICGKSFKKKDLLRE 1796
M+KH HT R VC+ CG ++ L+ H +VH+ + E CGK F LR
Sbjct: 23 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 1797 HMIVHSTLRPFLCEF--CNAGFKCRKHLLQHYRTHTKPK 1833
H+ +H+ RP++C F CN F +L H TH K K
Sbjct: 83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 1757 CGNSYANPGNLRTHMVVHSNKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEF--CNA 1814
C + + +R H+ H + H+C CGK+F + L+ H +VH+ +PF C F C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 1815 GFKCRKHLLQHYRTHTKPKA-TNSFSSSKCEESFDNCNNLWSHMF 1858
F +L H R HT + F C + F NL SH+
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDG--CNKKFAQSTNLKSHIL 115
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 1459 PNKSVTAKFKALFTERXXXXXXXXXIYECDICKKQVTNRKNMIDHQRSVHELLKPYEC-- 1516
P+K T F+ R ++ C C K + HQ VH KP++C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTF 67
Query: 1517 DTCGHGLSSKKSLDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQK 1571
+ CG S +L H RIHTG++ YVC C F Q +L H +H++ +N +
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 1583 PNKSVTAKFKALFTERXXXXXXXXXIYECDICKKQVTNRKNMIDHQRSVHELLKPYEC-- 1640
P+K T F+ R ++ C C K + HQ VH KP++C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTF 67
Query: 1641 DTCGHGLSSKKSLDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQK 1695
+ CG S +L H RIHTG++ YVC C F Q +L H +H++ +N +
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 37/155 (23%)
Query: 671 RHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXXXXXX 730
R C H G C ++ D++ + HL H G + + C CG F+
Sbjct: 4 RTIACPHKG-------CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL 55
Query: 731 XXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHS 790
E+ FQC+F + CG F+ N+ H ++H+
Sbjct: 56 VHTGEKPFQCTF---------------------------EGCGKRFSLDFNLRTHVRIHT 88
Query: 791 TERPYICEY--CNVSFKEKKSLVRHYKIHKGVNTN 823
+RPY+C + CN F + +L H H N
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 22/121 (18%)
Query: 554 CDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVK 613
C +++ S ++H H G R + C+ C K F ++L H + T +
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH---------QLVHTGE-- 60
Query: 614 KSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKKHLNR 671
K + + +G C F+ +LR HVR HTGDRPY C D C K F +L
Sbjct: 61 KPFQCTFEG--------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 672 H 672
H
Sbjct: 113 H 113
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 631 CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNI--CG 688
C +F ++R H+ TH G R + C CGK+FV L RH +QC CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 689 RVMSDSTNFKDHLDNHKGEKKYTCEICG 716
+ S N + H+ H G++ Y C G
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 28/118 (23%)
Query: 1258 GETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVG 1317
G + C C L++H +HTGEKPF C G
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG--------------------- 69
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEI--CGKGFTQWASHYYHKFTHSEERS 1373
CG+ + NL+ H+R HTG++ YVC C K F Q + H TH++ ++
Sbjct: 70 -----CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 22/105 (20%)
Query: 246 CPECPRSYGNFSELKKHLAVHTGEKHFVCSV--CQRGFFMKNRLNEHYKRVHHMNFTSRD 303
C EC +++ S+LK+H VHTGEK F C+ C + F + L H R+H
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIH-------- 87
Query: 304 HDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEK 348
G R Y CP GC F + L+ H+L+H K
Sbjct: 88 -----------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 1300 AAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVC--EICGKGFTQ 1357
A R+HL H +H+ C CG+ +SS LK H HTGEK + C E CGK F+
Sbjct: 22 AMRKHLHTHGPRVHV-----CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 76
Query: 1358 WASHYYHKFTHSEERSFKCSY--CAMTFRCPRTLTEHKKTHV 1397
+ H H+ +R + C + C F L H TH
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 240 EKVKFKCPE--CPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHM 297
E CP C + + + S ++KHL H G + VC+ C + F ++L H + VH
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVH-- 57
Query: 298 NFTSRDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EAC 355
G + ++C GC F L+ H+ HTG++PY C + C
Sbjct: 58 -----------------TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGC 100
Query: 356 GKSFPLKRRLNAH 368
K F L +H
Sbjct: 101 NKKFAQSTNLKSH 113
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 51/125 (40%)
Query: 1189 CSDCDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVN 1246
C++C K + +LK H +VH GE+ CT C K F
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF---------------------- 74
Query: 1247 QLKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQV--CGKSFAAREH 1304
S +L+ H+R+HTG++P+ C C K FA +
Sbjct: 75 -------------------------SLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 1305 LKRHF 1309
LK H
Sbjct: 110 LKSHI 114
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 1659 IHT-GEKKYVCQQCGASFTQWASLFYHKFSHSETRNQKCEESFDNCN-------NLWSHM 1710
+HT G + +VC +CG +F + + L H+ H+ + +C +F+ C NL +H+
Sbjct: 27 LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC--TFEGCGKRFSLDFNLRTHV 84
Query: 1711 FIKHEDSDFVC 1721
I D +VC
Sbjct: 85 RIHTGDRPYVC 95
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 1370 EERSFKCSY--CAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHST 1427
E R+ C + C FR + +H TH HVC CG + L H +H+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 1428 GRPHQC--DVCNAKFKL 1442
+P QC + C +F L
Sbjct: 60 EKPFQCTFEGCGKRFSL 76
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1979 CKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSH---INAQFVCS 2035
C++C + F DVY+L H H+GEK Y C CG F ++ H SH + ++C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 2036 FCGNTYKNPKSLDSHIRNSHTN 2057
CG + P L+ HI+ H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 1211 GERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPSI 1270
G ++C +C K F V L H K SH GE Y CP+C
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRH-KLSH------------------SGEKPYSCPVCGLR 44
Query: 1271 TSRYDSLQQHMRLHTGE--KPFSCQVCGKSFAAREHLKRHFNNIH 1313
R D + H+R H G KP+ CQ CGK F+ +HL H +H
Sbjct: 45 FKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 1285 TGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGE- 1343
+G +C++CGK F HL RH + + Y C VCG + H+R+H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1344 -KKYVCEICGKGFTQ 1357
K Y+C+ CGKGF++
Sbjct: 63 GKPYICQSCGKGFSR 77
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 572 SGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHIC 631
SG C IC K F L+ H ++S G Y C +C
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH---------------------KLSHSGEKPYSCPVC 41
Query: 632 DSIFTRYDSLRLHVRTHTG--DRPYTCDVCGKSFVAKKHLNRHYNCSHAG 679
F R D + HVR+H G +PY C CGK F HLN H H+G
Sbjct: 42 GLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 327 CPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNK--WHLGKGYRCHICG 384
C F+ L H LSH+GEKPY+C CG F K R++ H +GK Y C CG
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG 72
Query: 385 STMSNAANFKDHLDSH 400
S DHL+ H
Sbjct: 73 KGFSRP----DHLNGH 84
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 1341 TGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSD 1400
+G CEICGK F HK +HS E+ + C C + F+ ++ H ++H S
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1401 VK-HVCNTCGNEYNTRKNLLSHMK-IHST 1427
K ++C +CG ++ +L H+K +HS
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTH--SEERSF 1374
G C +CG++ D +L H +H+GEK Y C +CG F + YH +H S + +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 1375 KCSYCAMTFRCPRTLTEHKK 1394
C C F P L H K
Sbjct: 67 ICQSCGKGFSRPDHLNGHIK 86
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 1257 EGETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
G + C +C I L +H H+GEKP+SC VCG F ++ + H + V
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 1317 G--YQCNVCGRVLTDSSNLKVHMRN-HTGE 1343
G Y C CG+ + +L H++ H+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 622 GVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFG 681
G + C IC IF L H +H+G++PY+C VCG F K ++ H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 682 --YQCNICGRVMSDSTNFKDHLDNH 704
Y C CG+ S DHL+ H
Sbjct: 64 KPYICQSCGKGFSR----PDHLNGH 84
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 377 GYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIK--DRTY 434
G C ICG + + H SH GEK Y+C CG F K + +H +H + Y
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 435 PCTYCERKYQSPKTLKEHLK-VHTS 458
C C + + P L H+K VH+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 1753 VCSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVH--STLRPFLC 1809
C CG + + +L H + HS K + C +CG FK+KD + H+ H S +P++C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 1810 EFCNAGFKCRKHLLQHYR-THTKPKAT 1835
+ C GF HL H + H+ P +
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 649 TGDRPYTCDVCGKSFVAKKHLNRHYNCSHAG-FGYQCNICGRVMSDSTNFKDHLDNHKGE 707
+G C++CGK F HLNRH SH+G Y C +CG H+ +H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 708 --KKYTCEICGTGF 719
K Y C+ CG GF
Sbjct: 62 VGKPYICQSCGKGF 75
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 267 TGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTSRDHDLRRETETNVDGVRKYKCPHPG 326
+G C +C + F + V+H+N H G + Y CP
Sbjct: 3 SGSSGVACEICGKIF----------RDVYHLNRHKLSHS----------GEKPYSCPV-- 40
Query: 327 CPSSFQRFNALQEHMLSHTGE--KPYTCEACGKSFPLKRRLNAHYNKWHLG 375
C F+R + + H+ SH G KPY C++CGK F LN H + H G
Sbjct: 41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 740 CSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVH--STERPYIC 797
C C K + L H+ +H SG+ + C CG F + M H + H S +PYIC
Sbjct: 10 CEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 798 EYCNVSFKEKKSLVRHYK-IHKGVNTN 823
+ C F L H K +H G ++
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 551 CPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTN 610
C +C +I+ RH HSGE+ Y+C +C F K+R+S H R
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR------------- 56
Query: 611 DVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVR-THTG 650
S + SV Y C C F+R D L H++ H+G
Sbjct: 57 ----SHDGSVG--KPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 1487 CDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGE--KKYVC 1544
C+IC K + ++ H+ S H KPY C CG K + H R H G K Y+C
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 1545 QQCGASFTQWASLFYH 1560
Q CG F++ L H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 1611 CDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGE--KKYVC 1668
C+IC K + ++ H+ S H KPY C CG K + H R H G K Y+C
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 1669 QQCGASFTQWASLFYH 1684
Q CG F++ L H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVH-TSGD 460
G CE CG F L H+ +H ++ Y C C +++ + H++ H S
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 461 VRHICQTCGSEFHTRKNLLTHIR 483
+ICQ+CG F +L HI+
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIK 86
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1781 CEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
CEICGK F+ L H + HS +P+ C C FK + + H R+H +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-SVGKPYIC 68
Query: 1841 SKCEESFDNCNNLWSHM 1857
C + F ++L H+
Sbjct: 69 QSCGKGFSRPDHLNGHI 85
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 762 SGDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
SG C+ CG F ++ RH HS E+PY C C + FK K + H + H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 345 TGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLDSHRGE- 403
+G CE CGK F LN H K Y C +CG H+ SH G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 404 -KKYTCETCGTGFAYKSSLYHH 424
K Y C++CG GF+ L H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGH 84
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 681 GYQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXX--XXXXXXXXERMF 738
G C ICG++ D + H +H GEK Y+C +CG F + +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 739 QCSFCEKKYMSPKTLKEHEQTHRSG 763
C C K + P L H + SG
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKI- 1974
G+ C C I + L H HSGEK Y+C +C F R + H+++ +
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMR-IHTGE 2002
+ + C+ C + F +L H++ +H+G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 2000 TGEKKYVCETCGASFVHWGSLNIHNYSHINAQ-FVCSFCGNTYKNPKSLDSHIRNSHTNR 2058
+G CE CG F LN H SH + + C CG +K + H+R+ +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 2059 KKS-ICDDCTKAMSTP 2073
K IC C K S P
Sbjct: 63 GKPYICQSCGKGFSRP 78
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 1640 CDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN-----Q 1694
C+ CG L+ H H+GEK Y C CG F + + YH SH + Q
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 1695 KCEESFDNCNNLWSHM 1710
C + F ++L H+
Sbjct: 70 SCGKGFSRPDHLNGHI 85
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 71 GEIKFQCPDCHTMMKNFAYLKKHVR--DNHSGETFSCDECSKSFTTKKCLREHYKKLHT 127
GE + CP C K + HVR D G+ + C C K F+ L H K++H+
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 1485 YECDICKKQVTNRKNMIDHQRS-VHELLKPYECDTCGHGLSSKKSLDDHYR-IHTGE 1539
Y C +C + + M H RS + KPY C +CG G S L+ H + +H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 1609 YECDICKKQVTNRKNMIDHQRS-VHELLKPYECDTCGHGLSSKKSLDDHYR-IHTGE 1663
Y C +C + + M H RS + KPY C +CG G S L+ H + +H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1516 CDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQKHV 1573
C+ CG L+ H H+GEK Y C CG F + + YH SH + + ++
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 148 EGVVKYKCPECGFMVKRFQGLREHIVSVHAQV-KDHVCIVCGAAFGLARRLKTHYIRRHT 206
G Y CP CG KR + H+ S V K ++C CG F L H + H+
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1265 PLCPSITSRYDSLQQHMRLHTGEKPFSC--QVCGKSFAAREHLKRHFNNIHMKVGYQCNV 1322
P C + ++ L+ H+R HTGEKP+ C + C FA + L RH+ +QC V
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 1323 CGRVLTDSSNLKVHMRNH 1340
C R + S +L +HM+ H
Sbjct: 81 CNRSFSRSDHLALHMKRH 98
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 1923 PDCPTILQTFRGLKAHLDIHSGEKDYAC--HICNKVFVRHSTLENHMKAVHEKIRDFQCK 1980
P C + LKAHL H+GEK Y C C+ F R L H + H + FQC
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCG 79
Query: 1981 VCDRAFFDVYNLKLHMRIH 1999
VC+R+F +L LHM+ H
Sbjct: 80 VCNRSFSRSDHLALHMKRH 98
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 615 SAEISVDGVTKYKCHICD-----SIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKK 667
S+ S + K + H CD ++T+ L+ H+RTHTG++PY C + C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 668 HLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHK 705
L RHY +QC +C R S S + H+ H+
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 313 NVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYN 370
+++ R + C +PGC + + + L+ H+ +HTGEKPY C E C F L HY
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 371 KWHLGKGYRCHICGSTMSNAANFKDHLDSHR 401
K K ++C +C + S + + H+ H+
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 24/110 (21%)
Query: 542 LEGDRIKY-KCPLCDRIYTSFSETKRHFEVHSGERKYTCSI--CSKCFFIKNRLSEHYRR 598
LE RI Y P C ++YT S K H H+GE+ Y C+ C F + L+ HYR+
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 599 VHKMRVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTH 648
G ++C +C+ F+R D L LH++ H
Sbjct: 70 ---------------------HTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 1258 GETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHF 1309
GE YKC C +R D L +H R HTG KPF C VC +SF+ +HL H
Sbjct: 42 GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 1323 CGRVLTDSSNLKVHMRNHTGEKKYVC--EICGKGFTQWASHYYHKFTHSEERSFKCSYCA 1380
C +V T SS+LK H+R HTGEK Y C E C F + H H+ + F+C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 1381 MTFRCPRTLTEHKKTH 1396
+F L H K H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 1192 CDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQLK 1249
C K YT+ LK HL H GE+ CT CD F + LT HY++
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH------------ 70
Query: 1250 KKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLH 1284
G ++C +C SR D L HM+ H
Sbjct: 71 -------TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 736 RMFQCSF--CEKKYMSPKTLKEHEQTHRSGDIKHIC--DTCGSEFNTRKNMLRHTKVHST 791
R+ C + C K Y LK H +TH +G+ + C + C F + RH + H+
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHK 818
+P+ C CN SF L H K H+
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 1779 HICEI--CGKSFKKKDLLREHMIVHSTLRPFLC--EFCNAGFKCRKHLLQHYRTHTKPKA 1834
H C+ C K + K L+ H+ H+ +P+ C E C+ F L +HYR HT K
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 1835 TNSFSSSKCEESFDNCNNLWSHMFIKHEN 1863
F C SF ++L HM +H+N
Sbjct: 76 ---FQCGVCNRSFSRSDHLALHM-KRHQN 100
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 383 CGSTMSNAANFKDHLDSHRGEKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCE 440
C + +++ K HL +H GEK Y C E C FA L H H + + C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 441 RKYQSPKTLKEHLKVH 456
R + L H+K H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 1754 CSY--CGNSYANPGNLRTHMVVHSN-KNHIC--EICGKSFKKKDLLREHMIVHSTLRPFL 1808
C Y C Y +L+ H+ H+ K + C E C F + D L H H+ +PF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 1809 CEFCNAGFKCRKHLLQHYRTH 1829
C CN F HL H + H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 1484 IYECDI--CKKQVTNRKNMIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGE 1539
I+ CD C K T ++ H R+ H KPY+C + C + L HYR HTG
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 1540 KKYVCQQCGASFTQWASLFYH 1560
K + C C SF++ L H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALH 94
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 1608 IYECDI--CKKQVTNRKNMIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGE 1663
I+ CD C K T ++ H R+ H KPY+C + C + L HYR HTG
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 1664 KKYVCQQCGASFTQWASLFYH 1684
K + C C SF++ L H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALH 94
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 219 DKLDVTKIFNVN---KEDCQIMQGEKVKFKCP--ECPRSYGNFSELKKHLAVHTGEKHFV 273
D TK++ + K + GEK +KC C + EL +H HTG K F
Sbjct: 19 DYPGCTKVYTKSSHLKAHLRTHTGEK-PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 274 CSVCQRGFFMKNRLNEHYKR 293
C VC R F + L H KR
Sbjct: 78 CGVCNRSFSRSDHLALHMKR 97
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 767 HICD--TCGSEFNTRKNMLRHTKVHSTERPYIC--EYCNVSFKEKKSLVRHYKIHKGV 820
H CD C + ++ H + H+ E+PY C E C+ F L RHY+ H G
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 535 VKSEVQILEGDRIKYKCPL--CDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRL 592
+K+ ++ G++ YKC CD + E RH+ H+G + + C +C++ F + L
Sbjct: 33 LKAHLRTHTGEK-PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 593 SEHYRR 598
+ H +R
Sbjct: 92 ALHMKR 97
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 687 CGRVMSDSTNFKDHLDNHKGEKKYTC--EICGTGFMYXXXXXXXXXXXXXERMFQCSFCE 744
C +V + S++ K HL H GEK Y C E C F + FQC C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 745 KKYMSPKTLKEHEQTHRS 762
+ + L H + H++
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 1187 YKCS--DCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKR 1236
YKC+ CD + R EL H H G + C +C++SF + L H KR
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 430 KDRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHIC--QTCGSEFHTRKNLLTHIRTH 485
K R + C Y C + Y LK HL+ HT G+ + C + C F L H R H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-GEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 486 NTDRTHVCELCNANLKTRRSLLRHYTTH 513
+ C +CN + L H H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSH 677
++C IC F+R D L H+RTHTG++P+ CD+CG+ F RH + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHM 1314
++C +C SR D L H+R HTGEKPF+C +CG+ FA + KRH + H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHK 1365
+QC +C R + S +L H+R HTGEK + C+ICG+ F + H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 1974 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQFV 2033
++ FQC++C R F +L H+R HTGEK + C+ CG F H + Q +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE----RKRHRDIQHI 56
Query: 2034 CSFCGNTYKNPKSLDSHIRNSHTNRKKSI 2062
+ + S + H+ N KK +
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLV 85
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 1511 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQ 1553
+KP++C C S L H R HTGEK + C CG F +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 1635 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQ 1677
+KP++C C S L H R HTGEK + C CG F +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 682 YQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGF 719
+QC IC R S S + H+ H GEK + C+ICG F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 376 KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHR 425
K ++C IC S + + H+ +H GEK + C+ CG FA HR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 327 CPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHL 374
C +F R + L H+ +HTGEKP+ C+ CG+ F H + H+
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 1288 KPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYV 1347
KPF C++C ++F+ +HL H + + C++CGR S K H + +++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-----DIQHI 56
Query: 1348 CEICGKGFTQWASHYYH 1364
I + S YH
Sbjct: 57 LPILEDKVEELLSKNYH 73
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGF 281
F+C C R++ L H+ HTGEK F C +C R F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 1920 FKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVH 1971
F+C C L H+ H+GEK +AC IC + F R + H H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 1781 CEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGF 1816
C IC ++F + D L H+ H+ +PF C+ C F
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 1804 LRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSSKCEESFDNCNNLWSHMFIKH 1861
++PF C C F HL H RTHT K F+ C F + H I+H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHRDIQH 55
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1405 CNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKF 1440
C C ++ +L +H++ H+ +P CD+C KF
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 1187 YKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSHRMKV 1242
++C C + ++R L H+ H GE+ +C +C + F + H H + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI 59
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1754 CSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRPFL 1808
C C +++ +L TH+ H+ K C+ICG+ F + D + H + L P L
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL-PIL 60
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 549 YKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCF 586
++C +C R ++ H H+GE+ + C IC + F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 1344 KKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKH 1403
K + C IC + F++ H TH+ E+ F C C F ++ +K H D++H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF----ARSDERKRH--RDIQH 55
Query: 1404 V 1404
+
Sbjct: 56 I 56
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 769 CDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIH 817
C C F+ ++ H + H+ E+P+ C+ C F RH I
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 64/160 (40%), Gaps = 38/160 (23%)
Query: 1220 CDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPSITSRYDSLQQ 1279
CD++F + L H H + N + E EG+ S ++Y L
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK---------SFKAKYK-LVN 80
Query: 1280 HMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRN 1339
H+R+HTGEKPF C G CG++ S NLK+H R
Sbjct: 81 HIRVHTGEKPFPCPFPG--------------------------CGKIFARSENLKIHKRT 114
Query: 1340 HTGEKKYVCEI--CGKGFTQWASHYYHKFTHSEERSFKCS 1377
HTGEK + CE C + F + H H+ ++S S
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 1924 DCPTILQTFRG---LKAHLDIHSGEKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQ 1978
+CP ++F+ L H+ +H+GEK + C C K+F R L+ H K H + F+
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFK 122
Query: 1979 CKV--CDRAFFDVYNLKLHMRIHTGEK 2003
C+ CDR F + + K HM +HT +K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 1178 KLVEGDQVRYKCSDCDKTYTRFYELKCHL-MVHRGERTMSCTMCDKSFYQVSRLTEHYKR 1236
K ++ Q+ CD+T++ +EL H+ M H G + +C + + R + +K
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC--YWEECPREGKSFKA 74
Query: 1237 SHRMKVTRVNQLKKKSEICIEGETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQV 1294
+++ VN ++ + GE + CP C I +R ++L+ H R HTGEKPF C+
Sbjct: 75 KYKL----VNHIRVHT-----GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Query: 1295 --CGKSFAAREHLKRHF 1309
C + FA K+H
Sbjct: 126 EGCDRRFANSSDRKKHM 142
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 353 EACGKSFPLKRRLNAHYNKWHLGKGYRC-HIC--------GSTMSNAANFKDHLDSHRGE 403
++C ++F L H H+G + H+C G + +H+ H GE
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 404 KKYTCE--TCGTGFAYKSSLYHHRFTHIKDRTYPCTY--CERKYQSPKTLKEHLKVHTS 458
K + C CG FA +L H+ TH ++ + C + C+R++ + K+H+ VHTS
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 31/116 (26%)
Query: 327 CPSSFQRFNA---LQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHIC 383
CP + F A L H+ HTGEKP+ C G C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG--------------------------C 98
Query: 384 GSTMSNAANFKDHLDSHRGEKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCT 437
G + + N K H +H GEK + C E C FA S H H D++ P +
Sbjct: 99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 1303 EHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEI--CGKGFTQWAS 1360
EH+ N H+ +C G+ L H+R HTGEK + C CGK F + +
Sbjct: 48 EHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSEN 107
Query: 1361 HYYHKFTHSEERSFKCSY 1378
HK TH+ E+ FKC +
Sbjct: 108 LKIHKRTHTGEKPFKCEF 125
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 316 GVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSF 359
G + + CP PGC F R L+ H +HTGEKP+ C E C + F
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 28/159 (17%)
Query: 527 SSSSDHRLVKSEVQILEGDRIKYKCP--LCDRIYTSFSETKRHFEV-HSGERKYTCSIC- 582
SS S + +K E+ D + P CDR +++ E H + H G + +C
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 583 -SKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHI--CDSIFTRYD 639
+C Y+ V+ +RV G + C C IF R +
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHT---------------GEKPFPCPFPGCGKIFARSE 106
Query: 640 SLRLHVRTHTGDRPYTCDV--CGKSFV----AKKHLNRH 672
+L++H RTHTG++P+ C+ C + F KKH++ H
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1639 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQKC 1696
EC G +K L +H R+HTGEK + C CG F + +L HK +H+ + KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 1697 EESFDNCNNLWS 1708
E F+ C+ ++
Sbjct: 124 E--FEGCDRRFA 133
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 1925 CPTILQTFRGLKAHLDI-HSGEKDYACHIC--------NKVFVRHSTLENHMKAVHEKIR 1975
C T L H+ + H G + H+C K F L NH++ VH +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEK 89
Query: 1976 DFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYVCETCG 2011
F C C + F NLK+H R HTGEK + CE G
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 1770 HMVVHSNKNHIC--EIC---GKSFKKKDLLREHMIVHSTLRPFLCEFCNAG--FKCRKHL 1822
H+ NH+C E C GKSFK K L H+ VH+ +PF C F G F ++L
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL 108
Query: 1823 LQHYRTHTKPKATN-SFSSSKCEESFDNCNNLWSHMFI 1859
H RTHT K F C+ F N ++ HM +
Sbjct: 109 KIHKRTHTGEKPFKCEFEG--CDRRFANSSDRKKHMHV 144
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 631 CDSIFTRYDSLRLHVRT-HTGDRPYTCDVC--------GKSFVAKKHLNRHYNCSHAGFG 681
CD F+ L HV H G VC GKSF AK L H
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 682 YQCNI--CGRVMSDSTNFKDHLDNHKGEKKYTCEICG 716
+ C CG++ + S N K H H GEK + CE G
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1515 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHS 1565
EC G +K L +H R+HTGEK + C CG F + +L HK +H+
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 33/135 (24%)
Query: 1843 CEESFDNCNNLWSHMFIKH----ENSDFVC--NLCPPDSKIVIKYAHLLVRHMKKHHTMQ 1896
C+ +F + L +H+ ++H E ++ VC CP + K K + LV H++ H
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK-SFKAKYKLVNHIRVH---- 85
Query: 1897 LXXXXXXXXXXXXTQIFVDGAIRFKCP--DCPTILQTFRGLKAHLDIHSGEKDYACHI-- 1952
G F CP C I LK H H+GEK + C
Sbjct: 86 ------------------TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Query: 1953 CNKVFVRHSTLENHM 1967
C++ F S + HM
Sbjct: 128 CDRRFANSSDRKKHM 142
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 1694 QKCEESFDNCNNLWSHMFIKH----EDSDFVC--NLCPPDSKIVIKYAHLLERHMKKHHT 1747
+ C+ +F + L +H+ ++H E ++ VC CP + K K + L H++ H T
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK-SFKAKYKLVNHIRVH-T 86
Query: 1748 MQQRCVCSY--CGNSYANPGNLRTHMVVHSN-KNHICEI--CGKSFKKKDLLREHMIVHS 1802
++ C + CG +A NL+ H H+ K CE C + F ++HM VH+
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 1803 T 1803
+
Sbjct: 147 S 147
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 659 CGKSFVAKKHLNRHYNCSHAGFGYQCN-IC--------GRVMSDSTNFKDHLDNHKGEKK 709
C ++F L H H G Q N +C G+ +H+ H GEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 710 YTCEI--CGTGFMYXXXXXXXXXXXXXERMFQCSF--CEKKYMSPKTLKEHEQTHRS 762
+ C CG F E+ F+C F C++++ + K+H H S
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 39/168 (23%)
Query: 299 FTSRDHDLRRETETNVDGVRK-YKCPHPGCPSSFQRFNA---LQEHMLSHTGEKPYTC-- 352
F S++ + ++ G RK + C GC + F A L HM HTGEKP+ C
Sbjct: 13 FDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 353 EACGKSFPLKRRLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCG 412
E C KS+ S N K HL SH GEK Y CE G
Sbjct: 73 EGCRKSY----------------------------SRLENLKTHLRSHTGEKPYMCEHEG 104
Query: 413 TGFAYKSS---LYHHRFTHIKDRTYPCTY--CERKYQSPKTLKEHLKV 455
A+ ++ H TH ++ Y C C ++Y P +L++H+K
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 1277 LQQHMRLHTGEKPFSC--QVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLK 1334
L HMR HTGEKP C + C KS++ E NLK
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLE----------------------------NLK 86
Query: 1335 VHMRNHTGEKKYVC--EICGKGFTQWASHYYHK-FTHSEERSFKCSY--CAMTFRCPRTL 1389
H+R+HTGEK Y+C E C K F+ + H+ THS E+ + C C + P +L
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 1390 TEHKKT 1395
+H KT
Sbjct: 147 RKHVKT 152
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 1941 IHSGEKDYACHICN-----KVFVRHSTLENHMKA-VHEKIRDFQCKVCDRAFFDVYNLKL 1994
IH K++ CH + F L HM+ EK + C +++ + NLK
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 1995 HMRIHTGEKKYVC--ETCGASFVHWGSLNIH-NYSHINAQ-FVCSFCGNT--YKNPKSLD 2048
H+R HTGEK Y+C E C +F + H N +H N + +VC G T Y +P SL
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 2049 SHIRNSH 2055
H++ H
Sbjct: 148 KHVKTVH 154
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 306 LRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKR 363
+RR T G + +KC GC S+ R L+ H+ SHTGEKPY C E C K+F
Sbjct: 59 MRRHT-----GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 364 RLNAHYNKWHLG-KGYRCHICGST--MSNAANFKDHLDSHRG 402
H N+ H K Y C + G T ++ ++ + H+ + G
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 32/166 (19%)
Query: 1843 CEESFDNCNNLWSHMFIKH---ENSDFVCNLCPPDSKI-VIKYAHLLVRHMKKHHTMQLX 1898
C + FD+ L H+ +H E +FVC+ ++ K ++LV HM++H
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH------ 62
Query: 1899 XXXXXXXXXXXTQIFVDGAIRFKC--PDCPTILQTFRGLKAHLDIHSGEKDYAC--HICN 1954
G KC C LK HL H+GEK Y C C+
Sbjct: 63 ----------------TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 1955 KVFVRHSTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRI 1998
K F S H H + + CK+ C + + D +L+ H++
Sbjct: 107 KAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 622 GVTKYKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKKHLNRHYNCSH 677
G +KC C ++R ++L+ H+R+HTG++PY C + C K+F +H N +H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 678 AGF-GYQCNI--CGRVMSDSTNFKDHL 701
+ Y C + C + +D ++ + H+
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 35/172 (20%)
Query: 1953 CNKVFVRHSTLENHMKA--VHEKIRDFQCKVCD-----RAFFDVYNLKLHMRIHTGEKKY 2005
C++ F L +H+ + +H + ++F C R F Y L +HMR HTGEK +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 2006 VCETCGASFVHWGSLNIHNYSHINAQFVCSFCGNTYKNPKSLDSHIRNSHTNRKKSICD- 2064
C G C +Y ++L +H+R SHT K +C+
Sbjct: 69 KCTFEG-------------------------CRKSYSRLENLKTHLR-SHTGEKPYMCEH 102
Query: 2065 -DCTKAMSTPAPSSKSVCIEHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKH 2115
C+KA S + +K HSN P C + + + ++L H+ H
Sbjct: 103 EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 31/124 (25%)
Query: 641 LRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDH 700
L +H+R HTG++P+ C G C + S N K H
Sbjct: 55 LVVHMRRHTGEKPHKCTFEG--------------------------CRKSYSRLENLKTH 88
Query: 701 LDNHKGEKKYTCEICGTGFMYXXXXXXXX---XXXXXERMFQCSF--CEKKYMSPKTLKE 755
L +H GEK Y CE G + E+ + C C K+Y P +L++
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 756 HEQT 759
H +T
Sbjct: 149 HVKT 152
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 40/176 (22%)
Query: 657 DVCGKSFVAKKHLNRHYNCSHAGFGYQCNIC--GRVMSDSTNFKD------HLDNHKGEK 708
D C + F +++ L H N H + +C G + FK H+ H GEK
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 709 KYTCEICGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHI 768
+ C G C K Y + LK H ++H +G+ ++
Sbjct: 67 PHKCTFEG--------------------------CRKSYSRLENLKTHLRSH-TGEKPYM 99
Query: 769 C--DTCGSEFNTRKNMLRH-TKVHSTERPYICEY--CNVSFKEKKSLVRHYKIHKG 819
C + C F+ + +H + HS E+PY+C+ C + + SL +H K G
Sbjct: 100 CEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 26/103 (25%)
Query: 1187 YKCS--DCDKTYTRFYELKCHLMVHRGERTMSC--TMCDKSFYQVSRLTEHYKRSHRMKV 1242
+KC+ C K+Y+R LK HL H GE+ C C K+F S +H R+H
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH---- 123
Query: 1243 TRVNQLKKKSEICIEGETKYKCPLCPSITSRY---DSLQQHMR 1282
E Y C L P T RY SL++H++
Sbjct: 124 --------------SNEKPYVCKL-PGCTKRYTDPSSLRKHVK 151
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 26/132 (19%)
Query: 1189 CSDCDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVN 1246
CS + + Y L H+ H GE+ CT C KS+ ++ L H RSH
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL-RSH-------- 92
Query: 1247 QLKKKSEICIEGETKYKCP---LCPSITSRYDSLQQHMRLHTGEKPFSCQV--CGKSFAA 1301
GE Y C + ++ D + R H+ EKP+ C++ C K +
Sbjct: 93 ----------TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Query: 1302 REHLKRHFNNIH 1313
L++H +H
Sbjct: 143 PSSLRKHVKTVH 154
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 415 FAYKSSLYHHRFTHIKDRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQ--TCGS 470
F + L H H ++ + CT+ C + Y + LK HL+ HT G+ ++C+ C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT-GEKPYMCEHEGCSK 107
Query: 471 EFHTRKNLLTHI-RTHNTDRTHVCEL--CNANLKTRRSLLRHY-TTHG 514
F + H RTH+ ++ +VC+L C SL +H T HG
Sbjct: 108 AFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 1612 DICKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHY-RIHTGEKKYVC 1668
+ C+K + +N+ H RS H KPY C+ C S+ H R H+ EK YVC
Sbjct: 73 EGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Query: 1669 Q--QCGASFTQWASLFYH 1684
+ C +T +SL H
Sbjct: 132 KLPGCTKRYTDPSSLRKH 149
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 1500 MIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGAS 1550
++ H R H KP++C + C S ++L H R HTGEK Y+C+ G S
Sbjct: 55 LVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 1624 MIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGAS 1674
++ H R H KP++C + C S ++L H R HTGEK Y+C+ G S
Sbjct: 55 LVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 1746 HTMQQRCVCSYCGNSYA-NPGNLRTHMVVH-----SNKNHIC--EICGKSFKKKDLLREH 1797
H ++ VC + G S P + +VVH K H C E C KS+ + + L+ H
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 1798 MIVHSTLRPFLCEF--CNAGFKCRKHLLQHY-RTHTKPKA 1834
+ H+ +P++CE C+ F +H RTH+ K
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 625 KYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFG 681
+YKC C F+ L H RTHTG++PY CD CGK+F+ + HL H+ H G G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSG 73
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQ 1357
Y+C+ CG+ + SS+L H R HTGEK Y C+ CGK F Q
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 766 KHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNT 824
++ CD CG F+ ++ +H + H+ E+PY C+ C +F ++ L+ H+++H G ++
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1261 KYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKVG 1317
+YKC C S L +H R HTGEKP+ C CGK+F R HL H + +H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVHTGSG 73
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRV 294
+ Q E+ ++KC EC +S+ + S+L KH HTGEK + C C + F ++ L H+ RV
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-RV 68
Query: 295 H 295
H
Sbjct: 69 H 69
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 1514 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1567
Y+CD CG S L H R HTGEK Y C +CG +F Q + L H H+ +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 1691
Y+CD CG S L H R HTGEK Y C +CG +F Q + L H H+ +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
R+YKC C SF + L +H +HTGEKPY C+ CGK+F + L H+ + H G G
Sbjct: 17 RRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-RVHTGSG 73
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 1777 KNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATN 1836
+ + C+ CGKSF L +H H+ +P+ C+ C F R HL+ H+R HT ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Query: 1837 S 1837
Sbjct: 77 G 77
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTG 1538
Y+CD C K ++ ++ H+R H KPY+CD CG + L H+R+HTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTG 1662
Y+CD C K ++ ++ H+R H KPY+CD CG + L H+R+HTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINA 2030
R ++C C ++F +L H R HTGEK Y C+ CG +F+ L H+ H +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 1183 DQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
++ RYKC +C K+++ +L H H GE+ C C K+F Q S L H++
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHI 429
Y+C CG + S++++ H +H GEK Y C+ CG F +S L H H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 545 DRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYR 597
+R +YKC C + ++ S+ +H H+GE+ Y C C K F ++ L H+R
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1365 KFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKI 1424
++ E R +KC C +F L++H++TH + + C+ CG + R +L+ H ++
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT-GEKPYKCDECGKAFIQRSHLIGHHRV 68
Query: 1425 HSTGRP 1430
H+ P
Sbjct: 69 HTGSGP 74
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 401 RGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTS 458
R ++Y C+ CG F++ S L HR TH ++ Y C C + + L H +VHT
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 682 YQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFM 720
Y+C+ CG+ S S++ H H GEK Y C+ CG F+
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 736 RMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERP 794
R ++C C K + L +H +TH +G+ + CD CG F R +++ H +VH+ P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 1290 FSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTG 1342
+ C CGKSF+ L +H + Y+C+ CG+ S+L H R HTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 1919 RFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMK 1968
R+KC +C L H H+GEK Y C C K F++ S L H +
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1946 KDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG 2001
+ Y C C K F S L H + H + ++C C +AF +L H R+HTG
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 1344 KKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLS 1399
++Y C+ CGK F+ + H+ TH+ E+ +KC C F L H + H S
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1749 QQRCVCSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRP 1806
++R C CG S+++ +L H H+ K + C+ CGK+F ++ L H VH+ P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 1402 KHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYL 1446
++ C+ CG ++ +L H + H+ +P++CD C F R +L
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 432 RTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHN 486
R Y C C + + L +H + HT G+ + C CG F R +L+ H R H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHT-GEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 462 RHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTH 513
R+ C CG F +L H RTH ++ + C+ C R L+ H+ H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 652 RPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKG 706
R Y CD CGKSF L++H Y+C+ CG+ ++ H H G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 74 KFQCPDCHTMMKNFAYLKKHVRDNHSGE-TFSCDECSKSFTTKKCLREHYKKLHT 127
+++C +C + + L KH R H+GE + CDEC K+F + L H+ ++HT
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHH-RVHT 70
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 21/79 (26%)
Query: 575 RKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHICDSI 634
R+Y C C K F + LS+H RR H G YKC C
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTH--------------------TGEKPYKCDECGKA 55
Query: 635 FTRYDSLRLHVRTHTGDRP 653
F + L H R HTG P
Sbjct: 56 FIQRSHLIGHHRVHTGSGP 74
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 1210 RGERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPS 1269
R R C C KSF S L++H +R+H GE YKC C
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKH-RRTH------------------TGEKPYKCDECGK 54
Query: 1270 ITSRYDSLQQHMRLHTGEKPFS 1291
+ L H R+HTG P S
Sbjct: 55 AFIQRSHLIGHHRVHTGSGPSS 76
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 89
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 1267 CPSITSRYDSLQQHMRLHTGEKPFSCQV--CGKSFAAREHLKRHFNNIHMKVGYQCNVCG 1324
C ++ L+ H+R HTGEKP+ C CG FA + L RH+ +QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 1325 RVLTDSSNLKVHMRNH 1340
R + S +L +HM+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 631 CDSIFTRYDSLRLHVRTHTGDRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICG 688
C +T+ L+ H+RTHTG++PY CD CG F L RHY +QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 689 RVMSDSTNFKDHLDNH 704
R S S + H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 1935 LKAHLDIHSGEKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 1992
LKAHL H+GEK Y C C F R L H + H R FQC+ CDRAF +L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHL 81
Query: 1993 KLHMRIH 1999
LHM+ H
Sbjct: 82 ALHMKRH 88
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 1323 CGRVLTDSSNLKVHMRNHTGEKKYVCEI--CGKGFTQWASHYYHKFTHSEERSFKCSYCA 1380
CG+ T SS+LK H+R HTGEK Y C+ CG F + H H+ R F+C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 1381 MTFRCPRTLTEHKKTHV 1397
F L H K H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 322 CPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYNKWHLG-KGY 378
C + GC ++ + + L+ H+ +HTGEKPY C + CG F L HY K H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPF 66
Query: 379 RCHICGSTMSNAANFKDHLDSH 400
+C C S + + H+ H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 383 CGSTMSNAANFKDHLDSHRGEKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCE 440
CG T + +++ K HL +H GEK Y C + CG FA L H H R + C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 441 RKYQSPKTLKEHLKVH 456
R + L H+K H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 1747 TMQQRCVCSYCGNSYANPGNLRTHMVVHSN-KNHICEI--CGKSFKKKDLLREHMIVHST 1803
T C + CG +Y +L+ H+ H+ K + C+ CG F + D L H H+
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 1804 LRPFLCEFCNAGFKCRKHLLQHYRTH 1829
RPF C+ C+ F HL H + H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 1258 GETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHL----KRHF 1309
GE Y C C +R D L +H R HTG +PF CQ C ++F+ +HL KRHF
Sbjct: 32 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1778 NHICEI--CGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRK--HLLQHYRTHTKPK 1833
H C+ CGK++ K L+ H+ H+ +P+ C++ G+K + L +HYR HT
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT--- 61
Query: 1834 ATNSFSSSKCEESFDNCNNLWSHM 1857
F KC+ +F ++L HM
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHM 85
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 743 CEKKYMSPKTLKEHEQTHRSGDIKHICD--TCGSEFNTRKNMLRHTKVHSTERPYICEYC 800
C K Y LK H +TH +G+ + CD CG +F + RH + H+ RP+ C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 801 NVSFKEKKSLVRHYKIH 817
+ +F L H K H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1484 IYECDI--CKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGE 1539
+ CD C K T ++ H R+ H KPY CD CG + L HYR HTG
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 1540 KKYVCQQCGASFTQ 1553
+ + CQ+C +F++
Sbjct: 64 RPFQCQKCDRAFSR 77
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1608 IYECDI--CKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGE 1663
+ CD C K T ++ H R+ H KPY CD CG + L HYR HTG
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 1664 KKYVCQQCGASFTQ 1677
+ + CQ+C +F++
Sbjct: 64 RPFQCQKCDRAFSR 77
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 554 CDRIYTSFSETKRHFEVHSGERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTND 611
C + YT S K H H+GE+ Y C C F + L+ HYR+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK------------- 59
Query: 612 VKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTH 648
G ++C CD F+R D L LH++ H
Sbjct: 60 --------HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 1190 SDCDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQ 1247
+ C KTYT+ LK HL H GE+ C C F + LT HY++
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH---------- 60
Query: 1248 LKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLH 1284
G ++C C SR D L HM+ H
Sbjct: 61 ---------TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 316 GVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNK 371
G + Y C GC F R + L H HTG +P+ C+ C ++F L H +
Sbjct: 32 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 767 HICD--TCGSEFNTRKNMLRHTKVHSTERPYICEY--CNVSFKEKKSLVRHYKIHKG 819
H CD CG + ++ H + H+ E+PY C++ C F L RHY+ H G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 673 YNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEI--CGTGFMYXXXXXXXXX 730
+ C +AG CG+ + S++ K HL H GEK Y C+ CG F
Sbjct: 6 HTCDYAG-------CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Query: 731 XXXXERMFQCSFCEKKYMSPKTLKEHEQTH 760
R FQC C++ + L H + H
Sbjct: 59 KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 608 RTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKK 667
RT+ +K DG C F R D L H R HTG RP+ C C ++F
Sbjct: 28 RTHTGEKPYHCDWDG--------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 79
Query: 668 HLNRH 672
HL H
Sbjct: 80 HLALH 84
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 1640 CDTCGHGLSSKKS--LDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRN-- 1693
CD G G + KS L H R HTGEK Y C CG F + L H H+ R
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 1694 -QKCEESFDNCNNLWSHM 1710
QKC+ +F ++L HM
Sbjct: 68 CQKCDRAFSRSDHLALHM 85
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 1982 CDRAFFDVYNLKLHMRIHTGEKKYVC--ETCGASFVHWGSLNIHNYSHINAQ-FVCSFCG 2038
C + + +LK H+R HTGEK Y C + CG F L H H + F C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 2039 NTYKNPKSLDSHIRN 2053
+ L H++
Sbjct: 73 RAFSRSDHLALHMKR 87
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 1947 DYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKK 2004
DYA C K + + S L+ H++ H + + C C F L H R HTG +
Sbjct: 9 DYA--GCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 2005 YVCETCGASFVHWGSLNIHNYSHI 2028
+ C+ C +F L +H H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRHF 89
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 249 CPRSYGNFSELKKHLAVHTGEKHFVCSV--CQRGFFMKNRLNEHYKR 293
C ++Y S LK HL HTGEK + C C F + L HY++
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 249 CPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKR 293
C + EL +H HTG + F C C R F + L H KR
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 433 TYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHI-CQTCGSEFHTRKNLLTHIRTHNTDR 489
T+ C Y C + Y LK HL+ HT H CG +F L H R H R
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 490 THVCELCNANLKTRRSLLRHYTTH 513
C+ C+ L H H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 90
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 1267 CPSITSRYDSLQQHMRLHTGEKPFSCQV--CGKSFAAREHLKRHFNNIHMKVGYQCNVCG 1324
C ++ L+ H+R HTGEKP+ C CG FA + L RH+ +QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 1325 RVLTDSSNLKVHMRNH 1340
R + S +L +HM+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 631 CDSIFTRYDSLRLHVRTHTGDRPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICG 688
C +T+ L+ H+RTHTG++PY CD CG F L RHY +QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 689 RVMSDSTNFKDHLDNH 704
R S S + H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 1935 LKAHLDIHSGEKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 1992
LKAHL H+GEK Y C C F R L H + H R FQC+ CDRAF +L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHL 82
Query: 1993 KLHMRIH 1999
LHM+ H
Sbjct: 83 ALHMKRH 89
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 1323 CGRVLTDSSNLKVHMRNHTGEKKYVCEI--CGKGFTQWASHYYHKFTHSEERSFKCSYCA 1380
CG+ T SS+LK H+R HTGEK Y C+ CG F + H H+ R F+C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 1381 MTFRCPRTLTEHKKTHV 1397
F L H K H
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 322 CPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYNKWHLG-KGY 378
C + GC ++ + + L+ H+ +HTGEKPY C + CG F L HY K H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPF 67
Query: 379 RCHICGSTMSNAANFKDHLDSH 400
+C C S + + H+ H
Sbjct: 68 QCQKCDRAFSRSDHLALHMKRH 89
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 383 CGSTMSNAANFKDHLDSHRGEKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCE 440
CG T + +++ K HL +H GEK Y C + CG FA L H H R + C C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 441 RKYQSPKTLKEHLKVH 456
R + L H+K H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 1747 TMQQRCVCSYCGNSYANPGNLRTHMVVHSN-KNHICEI--CGKSFKKKDLLREHMIVHST 1803
T C + CG +Y +L+ H+ H+ K + C+ CG F + D L H H+
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 1804 LRPFLCEFCNAGFKCRKHLLQHYRTH 1829
RPF C+ C+ F HL H + H
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 1258 GETKYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHL----KRHF 1309
GE Y C C +R D L +H R HTG +PF CQ C ++F+ +HL KRHF
Sbjct: 33 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 743 CEKKYMSPKTLKEHEQTHRSGDIKHICD--TCGSEFNTRKNMLRHTKVHSTERPYICEYC 800
C K Y LK H +TH +G+ + CD CG +F + RH + H+ RP+ C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 801 NVSFKEKKSLVRHYKIH 817
+ +F L H K H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 1778 NHICEI--CGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRK--HLLQHYRTHTKPK 1833
H C+ CGK++ K L+ H+ H+ +P+ C++ G+K + L +HYR HT +
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 1834 ATNSFSSSKCEESFDNCNNLWSHM 1857
F KC+ +F ++L HM
Sbjct: 66 P---FQCQKCDRAFSRSDHLALHM 86
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1484 IYECDI--CKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGE 1539
+ CD C K T ++ H R+ H KPY CD CG + L HYR HTG
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 1540 KKYVCQQCGASFTQ 1553
+ + CQ+C +F++
Sbjct: 65 RPFQCQKCDRAFSR 78
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1608 IYECDI--CKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGE 1663
+ CD C K T ++ H R+ H KPY CD CG + L HYR HTG
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 1664 KKYVCQQCGASFTQ 1677
+ + CQ+C +F++
Sbjct: 65 RPFQCQKCDRAFSR 78
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 554 CDRIYTSFSETKRHFEVHSGERKYTCSI--CSKCFFIKNRLSEHYRRVHKMRVSMARTND 611
C + YT S K H H+GE+ Y C C F + L+ HYR+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK------------- 60
Query: 612 VKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTH 648
G ++C CD F+R D L LH++ H
Sbjct: 61 --------HTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 1190 SDCDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSHRMKVTRVNQ 1247
+ C KTYT+ LK HL H GE+ C C F + LT HY++
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH---------- 61
Query: 1248 LKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLH 1284
G ++C C SR D L HM+ H
Sbjct: 62 ---------TGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 316 GVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNK 371
G + Y C GC F R + L H HTG +P+ C+ C ++F L H +
Sbjct: 33 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 88
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 767 HICD--TCGSEFNTRKNMLRHTKVHSTERPYICEY--CNVSFKEKKSLVRHYKIHKG 819
H CD CG + ++ H + H+ E+PY C++ C F L RHY+ H G
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 673 YNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEI--CGTGFMYXXXXXXXXX 730
+ C +AG CG+ + S++ K HL H GEK Y C+ CG F
Sbjct: 7 HTCDYAG-------CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59
Query: 731 XXXXERMFQCSFCEKKYMSPKTLKEHEQTH 760
R FQC C++ + L H + H
Sbjct: 60 KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 608 RTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKK 667
RT+ +K DG C F R D L H R HTG RP+ C C ++F
Sbjct: 29 RTHTGEKPYHCDWDG--------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 80
Query: 668 HLNRH 672
HL H
Sbjct: 81 HLALH 85
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 1640 CDTCGHGLSSKKS--LDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRN-- 1693
CD G G + KS L H R HTGEK Y C CG F + L H H+ R
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 1694 -QKCEESFDNCNNLWSHM 1710
QKC+ +F ++L HM
Sbjct: 69 CQKCDRAFSRSDHLALHM 86
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 1982 CDRAFFDVYNLKLHMRIHTGEKKYVC--ETCGASFVHWGSLNIHNYSHINAQ-FVCSFCG 2038
C + + +LK H+R HTGEK Y C + CG F L H H + F C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 2039 NTYKNPKSLDSHIR 2052
+ L H++
Sbjct: 74 RAFSRSDHLALHMK 87
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 1947 DYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKK 2004
DYA C K + + S L+ H++ H + + C C F L H R HTG +
Sbjct: 10 DYA--GCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 2005 YVCETCGASFVHWGSLNIHNYSHI 2028
+ C+ C +F L +H H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRHF 90
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 249 CPRSYGNFSELKKHLAVHTGEKHFVCSV--CQRGFFMKNRLNEHYKR 293
C ++Y S LK HL HTGEK + C C F + L HY++
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 249 CPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKR 293
C + EL +H HTG + F C C R F + L H KR
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 88
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 433 TYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHI-CQTCGSEFHTRKNLLTHIRTHNTDR 489
T+ C Y C + Y LK HL+ HT H CG +F L H R H R
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 490 THVCELCNANLKTRRSLLRHYTTH 513
C+ C+ L H H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 1943 SGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
SG+K Y C C K F S + HM ++H +R + C VC + F ++L HM+IHTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 2003 KKYVCETCGASFVHWGSLNIH 2023
K Y C C F+ S + H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1285 TGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV-GYQCNVCGRVLTDSSNLKVHMRNHTGE 1343
+G+K + CQ CGKSF + RH + +H+ + Y C VCG+ +L HM+ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 1344 KKYVCEICGKGFTQWASHYYHKFT 1367
K Y C IC K F W ++ T
Sbjct: 64 KPYECNICAKRF-MWRDSFHRHVT 86
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 649 TGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
+GD+ Y C CGKSF K +RH + Y C +CG+ + H+ H G K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 709 KYTCEICGTGFMY 721
Y C IC FM+
Sbjct: 65 PYECNICAKRFMW 77
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCN 685
Y C C FT H+ H G RPY C VCGK F K HL H Y+CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 686 ICGRVMSDSTNFKDHLDN 703
IC + +F H+ +
Sbjct: 70 ICAKRFMWRDSFHRHVTS 87
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 1757 CGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAG 1815
CG S+ + HM +H + + C +CGK FK K L HM +H+ ++P+ C C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 1816 FKCRKHLLQHYRTHTKPKATNSFSSSKCEE 1845
F R +H + TK S+ ++K E+
Sbjct: 75 FMWRDSFHRHVTSCTK-----SYEAAKAEQ 99
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 1484 IYECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYV 1543
+Y C C K T+ K+ D S+H L+PY C CG K L H +IHTG K Y
Sbjct: 10 LYPCQ-CGKSFTH-KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 1544 CQQCGASFTQWASLFY 1559
C C F W F+
Sbjct: 68 CNICAKRF-MWRDSFH 82
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 1608 IYECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYV 1667
+Y C C K T+ K+ D S+H L+PY C CG K L H +IHTG K Y
Sbjct: 10 LYPCQ-CGKSFTH-KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 1668 CQQCGASFTQWASLFY 1683
C C F W F+
Sbjct: 68 CNICAKRF-MWRDSFH 82
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 1784 CGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSSKC 1843
CGKSF K HM +H LRP+ C C FK + HL+ H + HT K + + C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP---YECNIC 71
Query: 1844 EESFDNCNNLWSHMFIKHENS 1864
+ F +W F +H S
Sbjct: 72 AKRF-----MWRDSFHRHVTS 87
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 1257 EGETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMKV 1316
G+ Y C S T + +HM +H G +P+ C VCGK F + HL H IH +
Sbjct: 6 SGDKLYPCQCGKSFTHK-SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGI 63
Query: 1317 -GYQCNVCGR 1325
Y+CN+C +
Sbjct: 64 KPYECNICAK 73
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 762 SGDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKGV 820
SGD + C CG F + RH +H RPY C C FK K LV H KIH G+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 345 TGEKPYTCEACGKSFPLKRRLNAHYNKWHLG-KGYRCHICGSTMSNAANFKDHLDSHRGE 403
+G+K Y C+ CGKSF K + + H + HLG + Y C +CG + H+ H G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 404 KKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKT 448
K Y C C F ++ S + H T C + Y++ K
Sbjct: 64 KPYECNICAKRFMWRDSFHRH-----------VTSCTKSYEAAKA 97
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGDV 461
G+K Y C+ CG F +KS H H+ R Y C C +K++ L H+K+HT G
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT-GIK 64
Query: 462 RHICQTCGSEFHTRKNLLTHI 482
+ C C F R + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 311 ETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYN 370
+ G + Y C C SF + HM H G +PY C CGK F +K L H
Sbjct: 2 SSGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM- 57
Query: 371 KWHLG-KGYRCHICGSTMSNAANFKDHLDS 399
K H G K Y C+IC +F H+ S
Sbjct: 58 KIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 543 EGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVHKM 602
GD++ Y C C + +T S+ RH +H G R Y C +C K F +K+ L H ++H
Sbjct: 6 SGDKL-YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIH-- 60
Query: 603 RVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHV 645
G+ Y+C+IC F DS HV
Sbjct: 61 ------------------TGIKPYECNICAKRFMWRDSFHRHV 85
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 622 GVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
G+ Y C +C F L H++ HTG +PY C++C K F+ + +RH
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 31/112 (27%)
Query: 1341 TGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSD 1400
+G+K Y C+ CGK FTH +R R ++ H L
Sbjct: 6 SGDKLYPCQ-CGK-----------SFTHKSQRD-------------RHMSMH-----LGL 35
Query: 1401 VKHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLR-KYLKHVSA 1451
+ C CG ++ + +L+ HMKIH+ +P++C++C +F R + +HV++
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 1938 HLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFF 1987
H+ +H G + Y C +C K F L HMK +H I+ ++C +C + F
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFM 76
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 431 DRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRT 490
D+ YPC C + + H+ +H G + C CG +F + +L+ H++ H +
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 491 HVCELCNANLKTRRSLLRHYTT 512
+ C +C R S RH T+
Sbjct: 66 YECNICAKRFMWRDSFHRHVTS 87
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 1258 GETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNN 1311
G Y C +C L HM++HTG KP+ C +C K F R+ RH +
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCS 1377
Y C CG+ T S HM H G + Y C +CGK F H H+ + ++C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 1378 YCAMTF 1383
CA F
Sbjct: 70 ICAKRF 75
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 735 ERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERP 794
++++ C C K + H H G + C CG +F + +++ H K+H+ +P
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 795 YICEYCNVSFKEKKSLVRH 813
Y C C F + S RH
Sbjct: 66 YECNICAKRFMWRDSFHRH 84
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCT 437
Y C CG + ++ + H+ H G + Y C CG F K L H H + Y C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 438 YCERKYQSPKTLKEHL 453
C +++ + H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 248 ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+C +S+ + S+ +H+++H G + + C VC + F MK+ L H K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHM 1967
G + C C + L H+ IH+G K Y C+IC K F+ + H+
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
KPY C CG S L H R+HTGEK Y C +CG +F+Q + L H+ H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
KPY C CG S L H R+HTGEK Y C +CG +F+Q + L H+ H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRH 1308
E Y C C SR L QH R+HTGEKP+ C CGK+F+ L H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERS 1373
Y C CG+ + SS L H R HTGEK Y C CGK F+Q + H+ H+ S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 769 CDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIH 817
C CG F+ +++H +VH+ E+PY C C +F + L+ H +IH
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 403 EKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGD 460
EK Y C CG F+ S L H+ H ++ Y C C + + L H ++HTSG
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1945 EKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 2000
EK Y C C K F R S L H + VH + ++C C +AF L H RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
Y C C F+R L H R HTG++PY C CGK+F L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHT 1537
Y C C K + ++ HQR VH KPY+C CG S L +H RIHT
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHT 1661
Y C C K + ++ HQR VH KPY+C CG S L +H RIHT
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 1777 KNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATN 1836
K + C CGK+F + +L +H VH+ +P+ C C F L+ H R HT ++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINA 2030
+ + C C +AF L H R+HTGEK Y C CG +F L H H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 1187 YKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
Y C +C K ++R L H VH GE+ C C K+F Q S L H +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 327 CPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAH 368
C +F R + L +H HTGEKPY C CGK+F L H
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 376 KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTH 428
K Y C CG S ++ H H GEK Y C CG F+ S L +H+ H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 1343 EKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHV 1397
EK Y C CGK F++ + H+ H+ E+ +KC C F L H++ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 431 DRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRT 490
++ Y C C + + L +H +VHT G+ + C CG F L+ H R H + +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHT-GEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTS 301
+ C EC +++ S L +H VHTGEK + C C + F + L H +R+H +S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTSGPSS 71
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1371 ERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTG 1428
E+ + C C F L +H++ H + + C CG ++ L++H +IH++G
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHT-GEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 1920 FKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMK 1968
+ C +C L H +H+GEK Y C C K F ++S L NH +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 549 YKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYR 597
Y C C + ++ S +H VH+GE+ Y C C K F + L H R
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 735 ERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHST 791
E+ + C C K + L +H++ H +G+ + C CG F+ ++ H ++H++
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 682 YQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGF 719
Y C CG+ S S+ H H GEK Y C CG F
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNH 704
++PY C CGK+F L +H Y+C CG+ S ++ +H H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1261 KYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHF 1309
Y CP+ C SR D L +H+R+HTG+KPF C++C ++F+ +HL H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 620 VDGVTKYKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
V + Y C + CD F+R D L H+R HTG +P+ C +C ++F HL H
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 1963 LENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSL 2020
+ N + V K+R + C V CDR F L H+RIHTG+K + C C +F L
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 2021 NIHNYSH 2027
H +H
Sbjct: 66 TTHIRTH 72
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 314 VDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAH 368
V +R Y CP C F R + L H+ HTG+KP+ C C ++F L H
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 1762 ANPGNLRTHMVVHSNKNHICEI--CGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCR 1819
+P N + VV + + C + C + F + D L H+ +H+ +PF C C F
Sbjct: 3 PHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 1820 KHLLQHYRTHT 1830
HL H RTHT
Sbjct: 63 DHLTTHIRTHT 73
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 243 KFKCP--ECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYK 292
+ CP C R + EL +H+ +HTG+K F C +C R F + L H +
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 548 KYKCPL--CDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYR 597
Y CP+ CDR ++ E RH +H+G++ + C IC + F + L+ H R
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1511 LKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
++PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1635 LKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
++PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 1946 KDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 2000
+ YAC + C++ F R L H++ +H + FQC++C R F +L H+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1318 YQCNV--CGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHS 1369
Y C V C R + S L H+R HTG+K + C IC + F++ H TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1187 YKCS--DCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
Y C CD+ ++R EL H+ +H G++ C +C ++F + LT H +
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 430 KDRTYPCTY--CERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTH 485
K R Y C C+R++ L H+++HT G C+ C F +L THIRTH
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 652 RPYTCDV--CGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNH 704
RPY C V C + F L RH +QC IC R S S + H+ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIH 817
++C F+ + RH ++H+ ++P+ C C +F L H + H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKA 1969
L H+ IH+G+K + C IC + F R L H++
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain In
Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 1286 GEKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEKK 1345
G + C VC +S+ L+RHFN + Y C C +V + H +HTGE++
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 1346 YVCEICGKGFTQW 1358
Y C CGK F +
Sbjct: 79 YQCLACGKSFINY 91
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 42/152 (27%)
Query: 1911 QIFVDGAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAV 1970
++ VDG + + C C L+ H +IHS EK Y C C KVF
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF------------- 60
Query: 1971 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINA 2030
+ +++ K H HTGE++Y C CG SF IN
Sbjct: 61 --PLAEYRTK--------------HEIHHTGERRYQCLACGKSF-------------INY 91
Query: 2031 QFVCSFCGNTYKNPKSLDSHIRNSHTNRKKSI 2062
QF+ S + + S DS + H R I
Sbjct: 92 QFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQI 123
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 540 QILEGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRV 599
+++ R+ Y C +C R Y + +RHF +HS E+KY C C K F + ++H
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH---- 69
Query: 600 HKMRVSMARTNDVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRT-HTGD 651
EI G +Y+C C F Y + H+++ H+ D
Sbjct: 70 -----------------EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%)
Query: 650 GDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEKK 709
G Y C VC +S+V L RH+N Y C C +V + H +H GE++
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 710 YTCEICGTGFM 720
Y C CG F+
Sbjct: 79 YQCLACGKSFI 89
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGDV 461
G Y C C + +SL H H ++ YPC YCE+ + + +H ++H +G+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGER 77
Query: 462 RHICQTCGSEFHTRKNLLTHIRT-HNTD 488
R+ C CG F + + +HI++ H+ D
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1964 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIH 2023
++H + + + + C VC R++ + +L+ H IH+ EKKY C C F H
Sbjct: 10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH 69
Query: 2024 NYSHINA-QFVCSFCGNTYKNPKSLDSHIRNSHTN 2057
H ++ C CG ++ N + + SHI++ H+
Sbjct: 70 EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 1315 KVGYQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSF 1374
+V Y C VC R ++L+ H H+ EKKY C C K F H+ H+ ER +
Sbjct: 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 1375 KCSYCAMTFRCPRTLTEHKKT 1395
+C C +F + ++ H K+
Sbjct: 80 QCLACGKSFINYQFMSSHIKS 100
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 268 GEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTSRDHDLRRETETNVDGVRKYKCPHPGC 327
G +++C VC+R + L H+ N S + +KY C + C
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHF------NIHSWE--------------KKYPCRY--C 56
Query: 328 PSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHL------GKGYRCH 381
F +H + HTGE+ Y C ACGKSF + +++H H K YR H
Sbjct: 57 EKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLH 116
Query: 382 ICGS 385
C S
Sbjct: 117 PCRS 120
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 235 QIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRV 294
+++ +V + C C RSY + L++H +H+ EK + C C++ F + +H +
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH--EI 71
Query: 295 HHMNFTSRDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKP 349
HH G R+Y+C C SF + + H+ S + P
Sbjct: 72 HHT------------------GERRYQC--LACGKSFINYQFMSSHIKSVHSQDP 106
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 27/70 (38%)
Query: 346 GEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLDSHRGEKK 405
G Y C C +S+ L H+N K Y C C A H H GE++
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 406 YTCETCGTGF 415
Y C CG F
Sbjct: 79 YQCLACGKSF 88
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCT 437
Y C +C + + + H + H EKKY C C F H H +R Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 438 YCERKYQSPKTLKEHLK-VHT---SGD 460
C + + + + + H+K VH+ SGD
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGD 109
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIH 1313
E KY C C + + +H HTGE+ + C CGKSF + + H ++H
Sbjct: 48 EKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 1342 GEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTHVLSDV 1401
G Y+C +C + + S H HS E+ + C YC F T+H+ H +
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT-GER 77
Query: 1402 KHVCNTCGNEYNTRKNLLSHMK-IHS 1426
++ C CG + + + SH+K +HS
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 1177 YKLVEGDQVRYKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKR 1236
Y+L+ +V Y C C ++Y L+ H +H E+ C C+K F
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF------------ 60
Query: 1237 SHRMKVTRVNQLKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
+ + + K EI GE +Y+C C Y + H++ + P
Sbjct: 61 -------PLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQK-- 1695
Y C C SL H+ IH+ EKKY C+ C F H+ H+ R +
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 1696 -CEESFDNCNNLWSHMFIKHE-----DSDFVCNLCPPDSKIVIKYAHLLER 1740
C +SF N + SH+ H DS L P S + +YA+L +R
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGDSKLY-RLHPCRSLQIRQYAYLSDR 132
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 1771 MVVHSNKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHT 1830
++V +IC +C +S+ LR H +HS + + C +C F ++ +H HT
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 1831 KPKATNSFSSSKCEESFDNCNNLWSHM 1857
+ + C +SF N + SH+
Sbjct: 75 GERRYQCLA---CGKSFINYQFMSSHI 98
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 1544
Y C +CK+ ++ H ++H K Y C C + H HTGE++Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 1545 QQCGASFTQWASLFYHKFSHSETRNQKHVSASSCHQKVPNKSVTAKFKALFTER 1598
CG SF + + H S +Q S ++ P +S+ + A ++R
Sbjct: 82 LACGKSFINYQFMSSHIKS---VHSQDPSGDSKLYRLHPCRSLQIRQYAYLSDR 132
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 706 GEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTHRSGDI 765
G Y C +C ++ E+ + C +CEK + + +HE H +G+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-IHHTGER 77
Query: 766 KHICDTCGSEFNTRKNMLRHTK-VHSTE 792
++ C CG F + M H K VHS +
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 1753 VCSYCGNSYANPGNLRTHMVVHS-NKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEF 1811
+C C SY +LR H +HS K + C C K F + +H I H+ R + C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 1812 CNAGF 1816
C F
Sbjct: 84 CGKSF 88
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 755 EHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHY 814
+H + G + +IC C + ++ RH +HS E+ Y C YC F + +H
Sbjct: 11 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE 70
Query: 815 KIHKG 819
H G
Sbjct: 71 IHHTG 75
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 738 FQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYIC 797
+ C C++ Y+ +L+ H H S + K+ C C F + +H H+ ER Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIH-SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 798 EYCNVSFKEKKSLVRHYK 815
C SF + + H K
Sbjct: 82 LACGKSFINYQFMSSHIK 99
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
KPY+CD C K +L H +HTGEK Y C CGA F + A+L H HS
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
KPY+CD C K +L H +HTGEK Y C CGA F + A+L H HS
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 347 EKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLDSHRGEK 404
+KPY C+ C SF K L +H K YRC+ICG+ + AN K H H GEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 764 DIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHKG 819
D + CD C + F + N+ H VH+ E+PY C C F +L H +IH G
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1485 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
Y+CD C+ + N+ H ++VH KPY C+ CG + +L H RIH+GEK
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1609 YECDICKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
Y+CD C+ + N+ H ++VH KPY C+ CG + +L H RIH+GEK
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 28/58 (48%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNHKGEK 708
D+PY CD C SF K +L H Y+CNICG + N K H H GEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 403 EKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTS 458
+K Y C+ C F YK +L H+ H ++ Y C C ++ P LK H ++H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+KP+ C C SF + +L H + Y+CN+CG +NLK H R H+GEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1371 ERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTGRP 1430
++ +KC C +FR L HK H + + CN CG ++N NL +H +IHS +P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHT-GEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1945 EKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+K Y C C F L +H K VH + ++C +C F NLK H RIH+GEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 735 ERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTERP 794
++ ++C C+ + L H+ H +G+ + C+ CG++FN N+ HT++HS E+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSH 2027
+ ++C C +F NL H +HTGEK Y C CGA F +L H H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERS 1373
Y+C+ C NL H HTGEK Y C ICG F + A+ H HS E+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
YKC C + F +L H HTG++PY C++CG F +L H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 431 DRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDR 489
D+ Y C C+ ++ L H VHT G+ + C CG++F+ NL TH R H+ ++
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHT-GEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRH 1308
+ YKC C + +L H +HTGEKP+ C +CG F +LK H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1754 CSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREHMIVHSTLRP 1806
C C S+ GNL +H VH+ K + C ICG F + L+ H +HS +P
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 1776 NKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKA 1834
+K + C+ C SF+ K L H VH+ +P+ C C A F +L H R H+ K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAH 368
+ YKC C +SF+ L H HTGEKPY C CG F L H
Sbjct: 16 KPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2002 EKKYVCETCGASFVHWGSLNIHNYSHINAQ-FVCSFCGNTYKNPKSLDSHIR 2052
+K Y C+ C ASF + G+L H H + + C+ CG + P +L +H R
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 21/80 (26%)
Query: 574 ERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCHICDS 633
++ Y C C F K L+ H + VH G Y+C+IC +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVH--------------------TGEKPYRCNICGA 53
Query: 634 IFTRYDSLRLHVRTHTGDRP 653
F R +L+ H R H+G++P
Sbjct: 54 QFNRPANLKTHTRIHSGEKP 73
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 1400 DVKHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYLK 1447
D + C+ C + + NL SH +H+ +P++C++C A+F LK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 376 KGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDR 432
K Y+C C ++ N H H GEK Y C CG F ++L H H ++
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 1343 EKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKTH 1396
+K Y C+ C F + HK H+ E+ ++C+ C F P L H + H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 1258 GETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
GE Y+C +C + +R +L+ H R+H+GEKP
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVH 295
+KC C S+ L H VHTGEK + C++C F L H R+H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIH 68
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 1187 YKCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEH 1233
YKC C ++ L H VH GE+ C +C F + + L H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 707 EKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQCSFCEKKYMSPKTLKEHEQTH 760
+K Y C+ C F Y E+ ++C+ C ++ P LK H + H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 1716 DSDFVCNLCPPDSKIVIKYAHLLERHMKKHHTMQQRCVCSYCGNSYANPGNLRTHMVVHS 1775
D + C+ C + +Y L H K HT ++ C+ CG + P NL+TH +HS
Sbjct: 15 DKPYKCDRC----QASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Query: 1776 NK 1777
+
Sbjct: 70 GE 71
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 549 YKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYR 597
YKC C + H VH+GE+ Y C+IC F L H R
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 682 YQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGF 719
Y+C+ C N H H GEK Y C ICG F
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRHYNCSHAG 679
+ C +C F R + L+ H R+HT ++PY C +C ++F + L RH H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIH 1313
+ C +C +R + L++H R HT EKP+ C +C ++F R+ L RH IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 768 ICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHY-KIHKG 819
+C+ C F ++++ RH + H+ E+PY C CN +F + L+RH KIH G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNF 299
F C C R++ LK+H HT EK + C +C R F ++ L H +++H N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1290 FSCQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRN-HTG 1342
F C+VC ++FA +EHLKRH+ + + Y C +C R T L H + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQ 1357
+ C VC R +LK H R+HT EK Y C +C + FT+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 1780 ICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQH 1825
+CE+C ++F +++ L+ H H+ +P+ C CN F R L++H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 549 YKCPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVH 600
+ C +C R + KRH+ H+ E+ Y C +C++ F ++ L H +++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 327 CPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLG 375
C +F R L+ H SHT EKPY C C ++F + L H K H G
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 1976 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFV 2015
F C+VC RAF +LK H R HT EK Y C C +F
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 1514 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 1560
+ C+ C + ++ L HYR HT EK Y C C +FT+ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 1684
+ C+ C + ++ L HYR HT EK Y C C +FT+ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 1920 FKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVH 1971
F C C LK H H+ EK Y C +CN+ F R L H + +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 406 YTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGDV 461
+ CE C FA + L H +H ++ YPC C R + L H + SG++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 464 ICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRH 509
+C+ C F +++L H R+H ++ + C LCN R L+RH
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 654 YTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMS 692
+ C+VC ++F ++HL RHY Y C +C R +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1753 VCSYCGNSYANPGNLRTHMVVHSN-KNHICEICGKSFKKKDLLREH 1797
VC C ++A +L+ H H+N K + C +C ++F ++DLL H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 75 FQCPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKSFTTKKCLREHYKKLHT 127
F C C +LK+H R + + + + C C+++FT + L H +K+H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 1947 DYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLH-MRIHTG 2001
+ C +C + F R L+ H ++ H + + C +C+RAF L H +IH+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 682 YQCNICGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGF 719
+ C +C R + + K H +H EK Y C +C F
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 1807 FLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSSSKCEESFDNCNNLWSH 1856
F+CE C F ++HL +HYR+HT K + C +F + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK---PYPCGLCNRAFTRRDLLIRH 49
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 1404 VCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYL 1446
VC C + +++L H + H+ +P+ C +CN F R L
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL 46
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 378 YRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHH 424
+ C +C + + K H SH EK Y C C F + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein Mbp-1
Length = 57
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 1779 HICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRT 1828
+ICE CG KK +L++H+ H+ +RP+ C +CN FK + +L +H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 766 KHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYK 815
K+IC+ CG + +H + H+ RPY C YCN SFK K +L +H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 625 KYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
KY C C + L+ H+RTHT RPY C C SF K +L +H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 462 RHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRH 509
++IC+ CG L HIRTH R + C CN + KT+ +L +H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 405 KYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLK 454
KY CE CG S L H TH R Y CTYC +++ L +H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 1345 KYVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEHKKT 1395
KY+CE CG + + H TH++ R + C+YC +F+ LT+H K+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 1402 KHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQCDVCNAKFKLRKYLKHVSASSCHQK 1457
K++C CG L H++ H+ RP+ C CN FK + L S H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 1261 KYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNN 1311
KY C C + L++H+R HT +P+ C C SF + +L +H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 434 YPCTYCERKYQSPKTLKEHLKVHTSGDVR-HICQTCGSEFHTRKNLLTHIRT 484
Y C C + + P LK+H++ HT DVR + C C F T+ NL H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHT--DVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 243 KFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHH 296
K+ C EC S LKKH+ HT + + C+ C F K L +H K H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 74 KFQCPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKSFTTKKCLREHYK 123
K+ C +C K + LKKH+R + + C C+ SF TK L +H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 316 GVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYNKWH 373
G + + C GC F + L H L+HTGEK +TC + C F K + H+N++H
Sbjct: 30 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 1323 CGRVLTDSSNLKVHMRNHTGEKKYVC--EICGKGFTQWASHYYHKFTHSEERSFKCSY-- 1378
CG + L+ H+ HTGEK + C E C KGFT H TH+ E++F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 1379 CAMTFRCPRTLTEH 1392
C + F + +H
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 1261 KYKCPL--CPSITSRYDSLQQHMRLHTGEKPFSC--QVCGKSFAAREHLKRHFNNIHMKV 1316
+Y C C + ++ LQ H+ HTGEKPF C + C K F + HL RH +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 1317 GYQCNV--CGRVLTDSSNLKVHM 1337
+ C+ C T +N+K H
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHF 85
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 53/134 (39%)
Query: 1186 RYKCS--DCDKTYTRFYELKCHLMVHRGERTMSCT--MCDKSFYQVSRLTEHYKRSHRMK 1241
RY CS DC Y + ++L+ HL H GE+ C C+K F + LT H
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH-------- 54
Query: 1242 VTRVNQLKKKSEICIEGETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQV--CGKSF 1299
S+T HTGEK F+C C F
Sbjct: 55 ---------------------------SLT------------HTGEKNFTCDSDGCDLRF 75
Query: 1300 AAREHLKRHFNNIH 1313
+ ++K+HFN H
Sbjct: 76 TTKANMKKHFNRFH 89
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYNKWHLG 375
++Y C C +++ + LQ H+ HTGEKP+ C E C K F L H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 376 KGYRCHI--CGSTMSNAANFKDHLD 398
K + C C + AN K H +
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFN 86
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 383 CGSTMSNAANFKDHLDSHRGEKKYTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTY-- 438
CG+ + + HL H GEK + C E C GF L H TH ++ + C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 439 CERKYQSPKTLKEHL 453
C+ ++ + +K+H
Sbjct: 71 CDLRFTTKANMKKHF 85
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 1777 KNHICEI--CGKSFKKKDLLREHMIVHSTLRPFLC--EFCNAGFKCRKHLLQHYRTHTKP 1832
K +IC CG ++ K L+ H+ H+ +PF C E C GF HL +H THT
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 1833 K 1833
K
Sbjct: 62 K 62
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 631 CDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKKHLNRHYNCSHAG---FGYQCN 685
C + + + L+ H+ HTG++P+ C + C K F + HL RH + +H G F +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSD 69
Query: 686 ICGRVMSDSTNFKDHLD 702
C + N K H +
Sbjct: 70 GCDLRFTTKANMKKHFN 86
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 1946 KDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTG 2001
K Y C C + ++ L+ H+ + H + F CK C++ F +++L H HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHL-SKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 2002 EKKYVCETCG 2011
EK + C++ G
Sbjct: 61 EKNFTCDSDG 70
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 247 PECPRSYGNFSELKKHLAVHTGEKHFVC--SVCQRGFFMKNRLNEH-YKRVHHMNFT--S 301
+C +Y +L+ HL+ HTGEK F C C++GF + L H NFT S
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 302 RDHDLRRETETNV 314
DLR T+ N+
Sbjct: 69 DGCDLRFTTKANM 81
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 1192 CDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSHRMK 1241
C+K +T + L H + H GE+ +C CD F + + +H+ R H +K
Sbjct: 41 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 554 CDRIYTSFSETKRHFEVHSGERKYTCSI--CSKCFFIKNRLSEHYRRVHKMR 603
C++ +TS RH H+GE+ +TC C F K + +H+ R H ++
Sbjct: 41 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 1643 CGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRNQKCEESF 1700
CG + L H HTGEK + C++ C FT L H +H+ +N C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS-- 68
Query: 1701 DNCN 1704
D C+
Sbjct: 69 DGCD 72
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 29/101 (28%)
Query: 687 CGRVMSDSTNFKDHLDNHKGEKKYTCEICGTGFMYXXXXXXXXXXXXXERMFQCSFCEKK 746
CG + + + HL H GEK + C+ G CEK
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEG--------------------------CEKG 44
Query: 747 YMSPKTLKEHEQTHRSGDIKHICDT--CGSEFNTRKNMLRH 785
+ S L H TH +G+ CD+ C F T+ NM +H
Sbjct: 45 FTSLHHLTRHSLTH-TGEKNFTCDSDGCDLRFTTKANMKKH 84
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 766 KHICD--TCGSEFNTRKNMLRHTKVHSTERPYIC--EYCNVSFKEKKSLVRHYKIHKGVN 821
++IC CG+ +N + H H+ E+P+ C E C F L RH H G
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 822 TNTLPSN 828
T S+
Sbjct: 63 NFTCDSD 69
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 71 GEIKFQCPD--CHTMMKNFAYLKKHVRDNHSGETFSCDE--CSKSFTTKKCLREHYKKLH 126
GE F C + C + +L +H + + F+CD C FTTK +++H+ + H
Sbjct: 30 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Query: 127 TIR 129
I+
Sbjct: 90 NIK 92
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 1282 RLHTGEKPFSCQVCGKSFAAREHLKRHFNNIH----MKVGYQCNVCGRVLTDSSNLKVHM 1337
R HTGEKP++C C K+F ++ L HF H + + C+ CG+ T + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 1338 RNHTGEKKYVCEICG 1352
N G E G
Sbjct: 68 DNCAGPDGVEGENSG 82
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 343 SHTGEKPYTCEACGKSFPLKRRLNAHYNKWH----LGKGYRCHICGSTMSNAANFKDHLD 398
+HTGEKPY C C K+F K+ L+ H+ ++H + + C CG T + H D
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 399 SHRGEKKYTCETCG 412
+ G E G
Sbjct: 69 NCAGPDGVEGENSG 82
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 646 RTHTGDRPYTCDVCGKSFVAKK----HLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHL 701
RTHTG++PY C C K+F K+ H R+++ + + C+ CG+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 702 DNHKGEKKYTCEICG 716
DN G E G
Sbjct: 68 DNCAGPDGVEGENSG 82
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 1997 RIHTGEKKYVCETCGASFVHWGSLNI-----HNYSHINAQFVCSFCGNTYKNPKSLDSHI 2051
R HTGEK Y C C +F L++ H+ + + A FVCS CG T+ ++ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 2052 RN 2053
N
Sbjct: 68 DN 69
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 265 VHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNF 299
HTGEK + CS C + F K L+ H+KR H NF
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 43
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 1941 IHSGEKDYACHICNKVFVRHSTLENHMKAVHEK---IRDFQCKVCDRAFFDVYNLKLHMR 1997
H+GEK YAC C+K F + L+ H K H+ F C C + F + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 1998 IHTGEKKYVCETCGAS 2013
G E G S
Sbjct: 69 NCAGPDGVEGENSGPS 84
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 17/76 (22%)
Query: 570 VHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCH 629
H+GE+ Y CS C K F K L H++R H A + C
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPA-----------------AFVCS 51
Query: 630 ICDSIFTRYDSLRLHV 645
C FTR +++ H
Sbjct: 52 KCGKTFTRRNTMARHA 67
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 787 KVHSTERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNTLPS--------------NDIIK 832
+ H+ E+PY C +C+ +F++K+ L H+K + + N +P+ N + +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH--DPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 833 HMRNAHQYDIIQAQDYLIQS 852
H N D ++ ++ S
Sbjct: 66 HADNCAGPDGVEGENSGPSS 85
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1208 VHRGERTMSCTMCDKSFYQVSRLTEHYKRSH 1238
H GE+ +C+ CDK+F Q L H+KR H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 1367 THSEERSFKCSYCAMTFRCPRTLTEHKKTH---VLSDVKHVCNTCGNEYNTRKNLLSHM 1422
TH+ E+ + CS+C TFR + L H K + VC+ CG + R + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 1507 VHELLKPYECDTCGHGLSSKKSLDDHY-RIHTG---EKKYVCQQCGASFTQWASLFYH 1560
H KPY C C K+ LD H+ R H +VC +CG +FT+ ++ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 1631 VHELLKPYECDTCGHGLSSKKSLDDHY-RIHTG---EKKYVCQQCGASFTQWASLFYH 1684
H KPY C C K+ LD H+ R H +VC +CG +FT+ ++ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1942 HSGEKDYACHICNKVFVRHSTLENHMKAVH-EKIRDFQCKVCDRAFFDVYNLKLHMR 1997
HSGEK Y C+IC+ F + T++ H+ H E + F C CD +L +H+R
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 1282 RLHTGEKPFSCQVCGKSFAAREHLKRHFNNIHMK--VGYQCNVCGRVLTDSSNLKVHMR 1338
R H+GEKP+ C +C F +K H H + + C C V+ S+L VH+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 1997 RIHTGEKKYVCETCGASFVHWGSLNIH---NYSHINAQFVCSFCGNTYKNPKSLDSHIRN 2053
R H+GEK Y C C A F G++ +H ++ A+F C C L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 2054 SHT 2056
H+
Sbjct: 68 QHS 70
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 570 VHSGERKYTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTNDVKKSAEISVDGVTKYKCH 629
HSGE+ Y C IC F + H + H + V K+ C
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKH-------------------TENVAKFHCP 49
Query: 630 ICDSIFTRYDSLRLHVR 646
CD++ R L +H+R
Sbjct: 50 HCDTVIARKSDLGVHLR 66
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 1319 QCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYH 1364
+C+ CG+ + L +H+R HTGEK Y CE C Q S YH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 1978 QCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIH 2023
+C C + F Y L +H+R HTGEK Y CE C + SL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 622 GVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKK----HLNRH 672
G + +C C F L +H+RTHTG++PY C+ C + K HL RH
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 1515 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 1560
EC CG S L+ H R HTGEK Y C+ C + Q SL YH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 1639 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 1684
EC CG S L+ H R HTGEK Y C+ C + Q SL YH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 763 GDIKHICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIH 817
G C CG F + + H + H+ E+PY CE+C + +K SL H + H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 1258 GETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIH 1313
G + +C C L H+R HTGEKP+ C+ C + A + L+ H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 1188 KCSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSHR 1239
+CS C K + Y L HL H GE+ C C+ + Q + L H +R H+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 1781 CEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTK 1831
C CGK F+ L H+ H+ +P+ CEFC + L H H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 380 CHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHH 424
C CG + HL +H GEK Y CE C A K+SL +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 1916 GAIRFKCPDCPTILQTFRGLKAHLDIHSGEKDYACHICNKVFVRHSTLENHMKAVHE 1972
G+ +C C ++ L HL H+GEK Y C C + ++L H++ H+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 683 QCNICGRVMSDSTNFKDHLDNHKGEKKYTCEIC 715
+C+ CG+ + HL H GEK Y CE C
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 327 CPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWH 373
C F+ L H+ +HTGEKPY CE C + K L H + H
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 459 GDVRHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTH 513
G C CG F + L H+RTH ++ + CE C + SL H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 650 GDRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDNH 704
G C CGK F + +LN H Y+C C + T+ + HL+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 317 VRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAH 368
+R + C HPGC ++ + + L+ H +HTGEKP++C + C + F L+ H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 247 PECPRSYGNFSELKKHLAVHTGEKHFVCS--VCQRGFFMKNRLNEHYKRVH 295
P C ++Y S LK H HTGEK F CS C+R F + L+ H +R H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH-RRTH 72
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1265 PLCPSITSRYDSLQQHMRLHTGEKPFSC--QVCGKSFAAREHLKRH 1308
P C + L+ H R HTGEKPFSC + C + FA + L RH
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 631 CDSIFTRYDSLRLHVRTHTGDRPYTCD--VCGKSFVAKKHLNRH 672
C + + L+ H RTHTG++P++C C + F L+RH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1323 CGRVLTDSSNLKVHMRNHTGEKKYVCEICG 1352
CG+ SS+LK H R HTGEK + C G
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKG 54
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 1777 KNHICE--ICGKSFKKKDLLREHMIVHSTLRPFLCEF--CNAGFKCRKHLLQHYRTH 1829
++HIC CGK++ K L+ H H+ +PF C + C F L +H RTH
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 1973 KIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKYVC--ETCGASFVHWGSLNIHNYSH 2027
+IR C C + +F +LK H R HTGEK + C + C F L+ H +H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 1191 DCDKTYTRFYELKCHLMVHRGERTMSCTM--CDKSFYQVSRLTEHYKRSH 1238
C KTY + LK H H GE+ SC+ C++ F + L+ H +R+H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH-RRTH 72
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 767 HICD--TCGSEFNTRKNMLRHTKVHSTERPYICEY--CNVSFKEKKSLVRHYKIH 817
HIC CG + ++ HT+ H+ E+P+ C + C F L RH + H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 552 PLCDRIYTSFSETKRHFEVHSGERKYTCSI--CSKCFFIKNRLSEHYRRVH 600
P C + Y S K H H+GE+ ++CS C + F + LS H RR H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH-RRTH 72
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 1329 DSSNLKVHMRNHTGEKKYVCEICGKGFTQWASHYYHKFTHSEERSFKCSY--CAMTFRCP 1386
DSS ++ H+ +H G CGK + + + H TH+ E+ F CS+ C F
Sbjct: 11 DSSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 1387 RTLTEHKKTH 1396
L+ H++TH
Sbjct: 63 DELSRHRRTH 72
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 383 CGSTMSNAANFKDHLDSHRGEKKYTC--ETCGTGFAYKSSLYHHRFTH 428
CG T +++ K H +H GEK ++C + C FA L HR TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 1943 SGEKDYACHI--CNKVFVRHSTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRI 1998
SG C C ++F L +H K H + F C C ++F +LK HM++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 1999 HTGEKKYVCETCGAS 2013
H+ + Y+CE G S
Sbjct: 63 HSDTRDYICEFSGPS 77
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 1295 CGKSFAAREHLKRH--FNNIHMKVGYQCN--VCGRVLTDSSNLKVHMRNHTGEKKYVCEI 1350
CG+ F+ R++L H + +IH K + C CG+ +LK HM+ H+ + Y+CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Query: 1351 CG 1352
G
Sbjct: 74 SG 75
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 1784 CGKSFKKKDLLREHMIVHSTLRPFLCEF 1811
CGKSF K L+EHM +HS R ++CEF
Sbjct: 46 CGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 771 TCGSEFNTRKNMLRHTKVHSTERPYICEYCNVS 803
CG FN +K++ H K+HS R YICE+ S
Sbjct: 45 ACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1487 CDI--CKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKY 1542
CD C + +NR+ + H++ H K + C CG + KK L +H ++H+ + Y
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 1543 VCQQCGAS 1550
+C+ G S
Sbjct: 70 ICEFSGPS 77
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1611 CDI--CKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKY 1666
CD C + +NR+ + H++ H K + C CG + KK L +H ++H+ + Y
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 1667 VCQQCGAS 1674
+C+ G S
Sbjct: 70 ICEFSGPS 77
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKS 358
+ + CP P C SF L+EHM H+ + Y CE G S
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 411 CGTGFAYKSSLYHHR-FTHIKDRTYPCT--YCERKYQSPKTLKEHLKVHTSGDVR-HICQ 466
CG F+ + L HH+ + HI +++ C C + + K LKEH+K+H+ D R +IC+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS--DTRDYICE 72
Query: 467 TCG 469
G
Sbjct: 73 FSG 75
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 78 PDCHTMMKNFAYLKKHVRDNH-SGETFSCDE--CSKSFTTKKCLREHYKKLHT 127
P C + N YL H + H ++FSC E C KSF KK L+EH KLH+
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHS 64
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 1379 CAMTFRCPRTLTEHKKTHVLSDVKHVCN--TCGNEYNTRKNLLSHMKIHSTGRPHQCDV 1435
C F + L HKK + C CG +N +K+L HMK+HS R + C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 320 YKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYNKWHLG-- 375
Y C C +F++ N L+ H SHT + PY C E C K F L RL H K H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYP 60
Query: 376 --KGYRCHICGSTMS 388
K C G T +
Sbjct: 61 CKKDDSCSFVGKTWT 75
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 406 YTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTY--CERKYQSPKTLKEHLKVHTS 458
Y C E CG F + L H+F+H + Y C + C++++ P LK H KVH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKKHLNRHYNCSHAGF 680
Y CH C F +++ L++H +HT PY C + C K F L RH HAG+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGY 59
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1346 YVC--EICGKGFTQWASHYYHKFTHSEERSFKCSY--CAMTFRCPRTLTEHKKTHV 1397
YVC E CGK F + H+F+H+++ ++C + C F P L H+K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLC--EFCNAGFKCRKHLLQHYRTHT 1830
E CGK+FKK + L+ H H+ P+ C E C+ F L +H + H
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYIC--EYCNVSFKEKKSLVRHYKIHKG 819
+ CG F + H H+ + PY C E C+ F L RH K+H G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 320 YKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTC--EACGKSFPLKRRLNAHYNKWHLG 375
Y C C +F++ N L+ H SHT + PY C E C K F L RL H K H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAG 58
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 406 YTC--ETCGTGFAYKSSLYHHRFTHIKDRTYPCTY--CERKYQSPKTLKEHLKVHTS 458
Y C E CG F + L H+F+H + Y C + C++++ P LK H KVH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 626 YKCHI--CDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSFVAKKHLNRHYNCSHAGF 680
Y CH C F +++ L++H +HT PY C + C K F L RH HAG+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGY 59
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1346 YVC--EICGKGFTQWASHYYHKFTHSEERSFKCSY--CAMTFRCPRTLTEHKKTHV 1397
YVC E CGK F + H+F+H+++ ++C + C F P L H+K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 1782 EICGKSFKKKDLLREHMIVHSTLRPFLC--EFCNAGFKCRKHLLQHYRTHT 1830
E CGK+FKK + L+ H H+ P+ C E C+ F L +H + H
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 770 DTCGSEFNTRKNMLRHTKVHSTERPYIC--EYCNVSFKEKKSLVRHYKIHKG 819
+ CG F + H H+ + PY C E C+ F L RH K+H G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 507-
539) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG G +SK +LD H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG G +SK +LD H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C+ C + + +NL +H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 769 CDTCGSEFNTRKNMLRHTKVHSTERP 794
C+ CG +N++ N+ H KVH+ ERP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 752-
784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPYEC CG S ++SL H RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPYEC CG S ++SL H RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C VC +AF +L +H RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C+VCG+ + +L VH R H+G+K
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+C +C F+ SL +H R H+G +P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRH 1308
EKP+ C VCGK+F+ R+ L H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVH 31
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRH 672
++PY C+ CGKSF+ K HLNRH
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH 31
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C+ CG K L+ H RIHTGEK
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C+ CG K L+ H RIHTGEK
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PYIC C SF +K L RH +IH G
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRH 1308
EKP+ C CGKSF + HL RH
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH 31
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRH 672
++PY+C+VCGK+FV HLN+H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQH 31
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRHF 1309
EKP+SC VCGK+F HL +H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHL 32
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 347 EKPYTCEACGKSFPLKRRLNAH 368
EKPY+C CGK+F L LN H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQH 31
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGE 1343
Y CNVCG+ S++L H+R HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
KPY C+ CG L+ H R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
KPY C+ CG L+ H R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
ERPYIC C +F ++ +L++H KIH G
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
R + C VC +AF D NL H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y C VCG+ TD SNL H + HTGEK
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 767 HICDTCGSEFNTRKNMLRHTKVHSTERP 794
+IC CG F R N+++H K+H+ E+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
+PY C CG + + +L H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
+PY C CG + + +L H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1403 HVCNTCGNEYNTRKNLLSHMKIHSTGRP 1430
++C CG + R NL+ H KIH+ +P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
RP++C C F R +L++H + HT K + S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRH 672
+RPY C VCGK+F + +L +H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKH 31
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains Of
Zinc Finger Protein 692
Length = 78
Score = 38.1 bits (87), Expect = 0.060, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 2000 TGEKKYVCETCGASFVHWGSLNIHNYSHINA----QFVCSFCGNTYKNPKSLDSHIRNSH 2055
+G CE CG + SLN H H +F C FCG ++ P S+ +H SH
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 34.3 bits (77), Expect = 0.91, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 1341 TGEKKYVCEICGKGFTQWASHYYHKFTHSEERS---FKCSYCAMTFRCPRTLTEHK-KTH 1396
+G CEICG Q AS +H+ H+E + F C +C F P ++ H+ K+H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTH---IKDRTYPCTYCERKYQSPKTLKEH 452
G CE CG K+SL H+ H + +PC +C ++++ P ++ H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHT---GEKKYVCEICGKGFTQWASHYYHK 1365
G QC +CG ++L H R H ++ CE CGK F + S H+
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 628 CHICDSIFTRYDSLRLHVRTHTGDRPYTCDVCGKSFVAKKHLNRH 672
C+ C + L H R H G RP +C CGK F + +NRH
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 768 ICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRHYKIHK 818
C+ CG + + RH + H RP C C F+++ + RH K+H+
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 1320 CNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGF 1355
CN CG+ D+S L H R H G + C CGK F
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 735 ERMFQCSFCEKKYMSPKTLKEHEQTHRSGDIKHICDTCGSEFNTRKNMLRHTKVHSTE 792
ER F C+FC K Y L H + H G C CG F + + RH KVH +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAH-LGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHIN 2029
R F C C + + D L H R H G + C CG F +N H H N
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1371 ERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIH 1425
ER F C++C T+R L+ H++ H L C CG + + + H+K+H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAH-LGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 403 EKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVH 456
E+ + C CG + S L HR H+ R C C + ++ + HLKVH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHF 1309
E + C C L +H R H G +P SC CGK F + + RH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRHYNCSHAGFGYQ---CNICGRVMSDSTNFKDHLDNHK 705
+RP+ C+ CGK++ L+RH A GY+ C CG+ D + HL H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH---RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 791 TERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNTLP 826
+ERP+ C +C ++++ L RH + H G + P
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCP 36
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 551 CPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYR 597
C C + Y S RH H G R +C C KCF ++ ++ H +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 1560
+P+ C+ CG L H R H G + C +CG F + + H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 1684
+P+ C+ CG L H R H G + C +CG F + + H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 2032 FVCSFCGNTYKNPKSLDSHIRNSHTNRKKSICDDCTK 2068
F C+FCG TY++ L H R +H + C +C K
Sbjct: 5 FFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGK 40
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 380 CHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHH 424
C+ CG T +A+ H +H G + +C CG F +S + H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 1775 SNKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKA 1834
S + C CGK+++ L H H RP C C F+ + + +H + H A
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 20/47 (42%)
Query: 1189 CSDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYK 1235
C+ C KTY L H H G R SC C K F S + H K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (781-
813) From Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.072, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C CG + K +L H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 37.7 bits (86), Expect = 0.072, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C CG + K +L H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 3.3, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
E Y+C C ++ +L QH R+HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 4.3, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C CG+ +NL H R HTGEK
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C C +AF NL H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 9.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PY C C +F +K +L +H +IH G
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.088, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PY+C+YC +F LVRH +IH G
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 35.4 bits (80), Expect = 0.32, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY CD CG L H RIHTGEK
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 35.4 bits (80), Expect = 0.32, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY CD CG L H RIHTGEK
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 767 HICDTCGSEFNTRKNMLRHTKVHSTERP 794
++CD CG F ++RH ++H+ E+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPYEC+ CG S + SL H IHTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPYEC+ CG S + SL H IHTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 312-
344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
E +YKC C + SR L QH ++HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 625 KYKCHICDSIFTRYDSLRLHVRTHTGDRP 653
+YKC+ C +F+R L H + HTG++P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V + +S L H + HTGEK
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1186 RYKCSDCDKTYTRFYELKCHLMVHRGER 1213
RYKC++C K ++R +L H +H GE+
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
K Y+C+ CG S L H +IHTGEK
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
K Y+C+ CG S L H +IHTGEK
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 199-
231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C+VCG+ + SS+L+ H R HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKC +C F++ L+ H R HTG++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
YKC +C S+ LQ H R+HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 1514 YECDTCGHGLSSKKSLDDHYRIHTGEK 1540
Y+CD CG S L H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEK 1664
Y+CD CG S L H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 1977 FQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
++C VC + F +L+ H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 769 CDTCGSEFNTRKNMLRHTKVHSTERP 794
CD CG EF+ ++ H +VH+ E+P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc
Finger Protein 32
Length = 42
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTG 1538
KPY CD CG S K SL H R+HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTG 1662
KPY CD CG S K SL H R+HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNT 824
E+PY C+ C +F +K SL+ H ++H G ++
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+C C F++ SL +H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG G + + +LD H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG G + + +LD H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1187 YKCSDCDKTYTRFYELKCHLMVHRGERT 1214
YKC DC K Y R L H VH GE+T
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG S L H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG S L H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
YQCN CG+ + +S L H R HTGEK
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ +QC C +AF L H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+C+ C F++ L H R HTG++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 760-
792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG S L H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG S L H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+ + +S L H R HTGEK
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C C +AF L H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
E YKC C S+ L +H R+HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PY C C +F + L RH +IH G
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKC+ C F++ L H R HTG++P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 396-
428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG + L +H+RIHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG + L +H+RIHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V T +S+L H R HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKC+ C +FT+ L H R HTG++P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
E YKC C + ++ L H R+HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++C CG G S + +L+ H+++HTGEK
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++C CG G S + +L+ H+++HTGEK
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis Zinc
Finger Protein
Length = 28
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1511 LKPYECDTCGHGLSSKKSLDDHYRIHTG 1538
++PY C CG S K ++ HYR+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1635 LKPYECDTCGHGLSSKKSLDDHYRIHTG 1662
++PY C CG S K ++ HYR+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 348 KPYTCEACGKSFPLKRRLNAHY 369
+PY+C CGK F LK ++ HY
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHY 23
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 652 RPYTCDVCGKSFVAKKHLNRHY 673
RPY+C VCGK F K + HY
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHY 23
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 556-
588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPYECD C S SL H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPYECD C S SL H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
E Y+C +C S + SL QH R+H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C VC +AF +L H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+C +C F+ + SL H R H+G++P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 301-
331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C+ CG SSK L H RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C+ CG SSK L H RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y CN CG+ + S L VH R HTGEK
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKG 819
S E+PY C C F K L+ H +IH G
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 423-
455) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C CG G + LD H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C CG G + LD H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 767 HICDTCGSEFNTRKNMLRHTKVHSTERPYICEYCNVSFKEKKSLVRH 813
H+C CG F ++ RH ++ + + C+YC +F L RH
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 35.0 bits (79), Expect = 0.49, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 1264 CPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIH 1313
CP+C + + ++H+RL + F C+ C +F + L RH N H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 34.3 bits (77), Expect = 0.78, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 1775 SNKNHICEICGKSFKKKDLLREHMIVHSTLRPFLCEFCNAGFKCRKHLLQH 1825
S + H+C +CG+SF K H+ + + F C++C A F L +H
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 1292 CQVCGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHM-RNHTGEKK 1345
C VCG+SFA++ +RH +H + C C S L H+ + H E +
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 654 YTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLDN-HKGEKK 709
+ C VCG+SF +K RH HA + C C S H++ H E +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 77 CPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKSFTTKKCLREHYKKLH 126
CP C + ++H+R H+ + F C C +F + L H K H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 31.2 bits (69), Expect = 6.9, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 406 YTCETCGTGFAYKSSLYHH-RFTHIKDRTYPCTYCERKYQSPKTLKEHL-KVHTS 458
+ C CG FA K + H R H + +PC YC + S L H+ K H S
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAA-QVFPCKYCPATFYSSPGLTRHINKCHPS 82
Score = 30.8 bits (68), Expect = 8.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 551 CPLCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEHYRRVH 600
CP+C + S +RH + + + C C F+ L+ H + H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 1346 YVCEICGKGFTQWASHYYHKFTHSEERSFKCSYCAMTFRCPRTLTEH 1392
++C +CG+ F + H + F C YC TF LT H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 668-
700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPYEC CG S L H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPYEC CG S L H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++CK C +AF +L H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C CG+ + +++L H R HTGEK
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
+P+ C+ C F HL+QH R HT K + S
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631-
663) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C CG+ TD SNL H + HTGEK
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C C +AF D NL H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C CG + + +L H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C CG + + +L H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 769 CDTCGSEFNTRKNMLRHTKVHSTERP 794
C CG F R N+ H K+H+ E+P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PY C C +F ++ +L H KIH G
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTG 37
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603-
635) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPYEC CG + K L H +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPYEC CG + K L H +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C++CG+ T S L VH + HTGEK
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+C IC FT+ L +H + HTG++P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C +C ++F L +H +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1777 KNHICEICGKSFKKKDLLREHMIVHSTLRP 1806
K + C ICGKSF KK L H +H+ +P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRH 672
++PY C +CGKSF K L+ H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH 31
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 1319 QCNVCGRVLTDSSNLKVHMRNHTGEK 1344
QC +CG+ T +S+L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP +C CG + SL H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP +C CG + SL H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1978 QCKVCDRAFFDVYNLKLHMRIHTGEK 2003
QC +C +AF +L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP+EC CG +K +L H RIHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP+EC CG +K +L H RIHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ F+C C ++F NL H RIHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
++P+ C +C SF+ K +LV H +IH G
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTG 37
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1775 SNKNHICEICGKSFKKKDLLREHMIVHST 1803
S K H+C++CGK FK K L+ H ++H+
Sbjct: 6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 584-
616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ F+CK C +AF +L H+RIHTGEK
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++C CG L H RIHTGEK
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++C CG L H RIHTGEK
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRH 672
++P+ CD+CGKSF + LNRH
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH 31
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRH 1308
EKPF C +CGKSF R L RH
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH 31
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++CD CG + L+ H +HT EK
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++CD CG + L+ H +HT EK
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 769 CDTCGSEFNTRKNMLRHTKVHSTERP 794
CD CG F R + RH+ VH+ E+P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 347 EKPYTCEACGKSFPLKRRLNAH 368
EKP+ C+ CGKSF + RLN H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH 31
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 612-
644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP+EC CG S L H RIHTGEK
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP+EC CG S L H RIHTGEK
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 8.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEK 270
F+C EC +S+ S+L H +HTGEK
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor Suppressor
Protein (Wt1) Finger 3
Length = 29
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ FQCK C R F +LK H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+QC C R + S +LK H R HTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDR 652
++C C F+R D L+ H RTHTG++
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++C TC S L H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++C TC S L H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 415-
447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
++CN C + T SS+L VH R HTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
+KC+ C FT+ SL +H R HTG++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1977 FQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
F+C C + F +L +H RIHTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 1537 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+GEK YVCQ+CG +FTQ + L H+ H+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 1661 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
+GEK YVCQ+CG +FTQ + L H+ H+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1339 NHTGEKKYVCEICGKGFTQWASHYYHKFTHSEE 1371
+GEK YVC+ CGK FTQ + H+ H+ E
Sbjct: 4 GSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGE 1343
Y C CG+ T SS L +H R HTGE
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKG 819
S E+PY+C+ C +F + L H ++H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 2000 TGEKKYVCETCGASFVHWGSLNIHNYSHIN 2029
+GEK YVC+ CG +F L+IH H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
KPY C CG + L H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
KPY C CG + L H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 536-
568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 1511 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKK 1541
+KPY C+ CG S SL H IHTGEK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 1635 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKK 1665
+KPY C+ CG S SL H IHTGEK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 623 VTKYKCHICDSIFTRYDSLRLHVRTHTGDRP 653
V Y C+ C F+ Y SL H HTG++P
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 767 HICDTCGSEFNTRKNMLRHTKVHSTERP 794
+IC CG F R N+++H K+H+ ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIH 817
E+PYIC C +F + +L++H KIH
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1403 HVCNTCGNEYNTRKNLLSHMKIHSTGRP 1430
++C CG + R NL+ H KIH+ +P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
+P++C C F R +L++H + HTK K + S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 887-
919) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C+ CG S K L H R HTGEK
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C+ CG S K L H R HTGEK
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y CN CG+ + S L H R HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y C+ C F++ L H RTHTG++P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 255-
287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C+ CG L +H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C+ CG L +H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ + C+ C +AF L+ H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y C CG+ S L+ H R HTGEK
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775-
807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y C+ CG+ + S L +HMR H+GEK
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C CG SSK L H R H+GEK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C CG SSK L H R H+GEK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 640-
672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++CKVC +AF +L H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+C +C FT+ L H +THTG++P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPYEC C + K L H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPYEC C + K L H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C VC + T ++L H + HTGEK
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
+P+ C+ C+ F + HL QH +THT K + S
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRH 672
++PY C VC K+F K HL +H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH 31
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PY C+ C+ +F +K L +H K H G
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRH 1308
EKP+ C+VC K+F + HL +H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH 31
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.62, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 345 TGEKPYTCEACGKSFPLKRRLNAH 368
+GEKPY+C CGK+F K +L H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTH 428
GEK Y+C CG F +KS L H+ H
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVH 33
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNTLPS 827
S E+PY C C +F K L+ +HKGV+T PS
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLI----VHKGVHTGVKPS 39
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1537 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+GEK Y C +CG +FT + L HK H+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1661 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
+GEK Y C +CG +FT + L HK H+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
Score = 31.6 bits (70), Expect = 5.6, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1285 TGEKPFSCQVCGKSFAAREHLKRH 1308
+GEKP+SC CGK+F + L H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY C+ CG + K L H +HTG K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY C+ CG + K L H +HTG K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 30.8 bits (68), Expect = 8.6, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 649 TGDRPYTCDVCGKSFVAKKHLNRH 672
+G++PY+C+ CGK+F K L H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693-
723) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y C+ CG+ S L +HMR HTGEK
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1974 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
++ + C C +AF L +HMR HTGEK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 1511 LKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
+KPY C CG SK L H R HTGEK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 1635 LKPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
+KPY C CG SK L H R HTGEK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 621 DGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRP 653
GV Y C C F L +H+RTHTG++P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1802 STLRPFLCEFCNAGFKCRKHLLQHYRTHT--KPKATNS 1837
S ++P+ C C F+ + +L+ H RTHT KP +S
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSS 43
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
+KC CD F++ SLRLH H G++P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C+ CD F +L+LH +H GEK
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEK 39
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 607-
639) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ F+C C +AF NL +H R HTGEK
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP+EC C ++K +L H R HTGEK
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP+EC C ++K +L H R HTGEK
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
++C+ C + SNL VH R HTGEK
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc
Finger Protein 32
Length = 41
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTG 1538
KPY+C CG S + SL H R+HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTG 1662
KPY+C CG S + SL H R+HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 34.3 bits (77), Expect = 0.84, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 345 TGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKG 377
+GEKPY C+ CGKSF + L H + H G G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH-ERLHTGSG 37
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1537 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+GEK Y C++CG SF+Q SL H+ H+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1661 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
+GEK Y C++CG SF+Q SL H+ H+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 1285 TGEKPFSCQVCGKSFAAREHLKRH 1308
+GEKP+ C+ CGKSF+ R L H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH 29
Score = 32.3 bits (72), Expect = 3.3, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2000 TGEKKYVCETCGASFVHWGSLNIHNYSH 2027
+GEK Y C+ CG SF GSL +H H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 32.3 bits (72), Expect = 3.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKG 819
S E+PY C+ C SF ++ SL H ++H G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 31.2 bits (69), Expect = 7.4, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 1258 GETKYKCPLCPSITSRYDSLQQHMRLHTGEKPFS 1291
GE Y+C C S+ SL H RLHTG P S
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 543 EGDRIKYKCPLCDRIYTSFSETKRHFEVHSGERK---YTCSICSKCFFIKNRLSEHYRRV 599
EG+ Y+C +C R+YT S RH+ V S +R Y C C K F K+ ++ H + +
Sbjct: 6 EGEHT-YRCKVCSRVYTHISNFCRHY-VTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 600 HKM 602
HK+
Sbjct: 64 HKI 66
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 1211 GERTMSCTMCDKSFYQVSRLTEHYKRSHRMKVTRVNQLKKKSEICIEGETKYKCPLCPSI 1270
GE T C +C + + +S HY SH+ V Y CP C
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV-----------------KVYPCPFCFKE 49
Query: 1271 TSRYDSLQQHMRL 1283
+R D++ H+++
Sbjct: 50 FTRKDNMTAHVKI 62
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.76, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 345 TGEKPYTCEACGKSFPLKRRLNAH 368
+GEKPY C CGK+F K +L H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVH 29
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKGVN 821
S E+PY+C C +F K L+ H IH GV+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTH 428
GEK Y C CG F +KS L H+ H
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1537 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1565
+GEK YVC CG +FT + L H+ H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1661 TGEKKYVCQQCGASFTQWASLFYHKFSHS 1689
+GEK YVC CG +FT + L H+ H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 385-
413) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.82, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
KPY C+ CG K L H RIHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 34.3 bits (77), Expect = 0.82, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
KPY C+ CG K L H RIHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 345 TGEKPYTCEACGKSFPLKRRLNAHYNKWHLGK 376
+G+KPY C CGK+F LK +L H + H G+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIH-ERIHTGE 36
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKG 819
S ++PY+C C +F K L+ H +IH G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 628-
660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
RPF C C GF R HL H R H++ K++ S
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSSG 46
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRHF 1309
E+PF C CGK F R HL H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHL 32
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
+P++C+ CG G + L H R+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
+P++C+ CG G + L H R+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 339-
371) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG G ++ L H+ +HTGEK
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG G ++ L H+ +HTGEK
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
+P+ CE C GF CR+ L H+ HT K + S
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 403 EKKYTCETCGTGFAYKSSLYHHRFTHIKDRT 433
EK Y CE CG GF + LY H H ++
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 435-
467) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
KPYEC CG K L H RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
KPYEC CG K L H RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGE 1343
Y+C+ CG+ S L VH R HTGE
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
+ ++C C ++F L +H RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 581-
609) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.86, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
KPYEC CG K L H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 34.3 bits (77), Expect = 0.86, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
KPYEC CG K L H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 345 TGEKPYTCEACGKSFPLKRRLNAHYNKWHLGK 376
+GEKPY C CGK+F LK +L H + H G+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIH-QRTHTGE 36
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 402 GEKKYTCETCGTGFAYKSSLYHHRFTH 428
GEK Y C CG F KS L H+ TH
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 30.8 bits (68), Expect = 8.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGE 1343
Y+C CG+ S L +H R HTGE
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++C CG S L+ H RIHTGEK
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++C CG S L+ H RIHTGEK
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ F C C +AF D L H RIHTGEK
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 648-
680) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V T +S+L H R HTG K
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKC+ C +FT+ L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 411-
441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGE 1343
Y+CN C + SNL VH R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
KPYEC+ C ++K +L H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
KPYEC+ C ++K +L H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 2002
+ ++C C +AF NL +H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 311-
343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP+ CDTC + +L+ H IHTGEK
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP+ CDTC + +L+ H IHTGEK
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ F+C CD++F L H IHTGEK
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKG 819
+ E+P+ C+ C+ SF+++ +L H IH G
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTG 37
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 724-
756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
+PYEC CG +K SL H R HTGEK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
+PYEC CG +K SL H R HTGEK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C CG+ S+L H R+HTGEK
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 687-
719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1514 YECDTCGHGLSSKKSLDDHYRIHTGEK 1540
YEC CG + K +L H RIHTGEK
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEK 1664
YEC CG + K +L H RIHTGEK
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
R ++C C +AF L +H RIHTGEK
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C+ CG+ S L +H R HTGEK
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+C C F R +L +H R HTG++P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1259 ETKYKCPLCPSITSRYDSLQQHMRLHTGEKP 1289
E Y+C C +R +L H R+HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 768-
800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
K ++C CG G + K L+ H RIHTGEK
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
K ++C CG G + K L+ H RIHTGEK
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+QC+ CGR T S+L H R HTGEK
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 1974 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ QC C R F +L H RIHTGEK
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 547-
579) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
R ++C C +AF L +H RIH GEK
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 1514 YECDTCGHGLSSKKSLDDHYRIHTGEK 1540
YEC CG K +L H RIH GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEK 1664
YEC CG K +L H RIH GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C+ CG+ S L +H R H GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 564-
596) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V T +S+L H HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 732-
764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V T +S+L H HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG + L H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG + L H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRHYNCSH 677
D+PY CD+CGK + + L+ HY SH
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 508-
540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V T +S+L H R HTG K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG + L +H RIHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG + L +H RIHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKC+ C +FT+ L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 48
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 2005
+ C++C + F DVY+L H H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region 659-
691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 1187 YKCSDCDKTYTRFYELKCHLMVHRGER 1213
YKCSDC K +TR L H H GER
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C+ CG+ T S L +H ++HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDR 652
YKC C FTR L +H ++HTG+R
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 495-
525) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1511 LKPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
+KPY C+ CG SK L H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1635 LKPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
+KPY C+ CG SK L H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 1804 LRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNS 1837
++P++C C F+ + +L+ H RTHT +S
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGE 1343
Y CN CG+ S L +H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 780 KNMLR-HTKVHSTERPYICEYCNVSFKEKKSLVRHYK 815
K LR H ++H T+RP+ C YC+ K+ +L +H K
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 1776 NKNHICEICGKSFKKKDLLREHM-IVHSTLRPFLCEFCNAG 1815
K +IC+ CGK F + D L H+ VH++ RP C+ +G
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1288 KPFSCQVCGKSFAAREHLKRHFNNIH 1313
KP+ CQ CGK F+ +HL H +H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1510 LLKPYECDTCGHGLSSKKSLDDHYR-IHTGEKKYVCQ 1545
+ KPY C +CG G S L+ H + +HT E+ + CQ
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1634 LLKPYECDTCGHGLSSKKSLDDHYR-IHTGEKKYVCQ 1669
+ KPY C +CG G S L+ H + +HT E+ + CQ
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 1946 KDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCKV 1981
K Y C C K F R L H+K VH R +C+V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563-
595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++C+ CG + L H R+HTGEK
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++C+ CG + L H R+HTGEK
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
++C CG+ T +S L H R HTGEK
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNT 824
S +R Y C+ C SF++K SL H +IH G ++
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 793 RPYICEYCNVSFKEKKSLVRHYK 815
RPY C YCN SFK K +L +H K
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMK 23
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 397-
429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRH 1308
EKP+ CQVCGK+F HL +H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH 31
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 651 DRPYTCDVCGKSFVAKKHLNRHYNCSHAG 679
++PY C VCGK+F HL +H++ H+G
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSV-HSG 37
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PY C+ C +F+ LV+H+ +H G
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
+P+ C+ C F+ HL+QH+ H+ + + S
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSSG 46
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479-
511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++C+ CG + L H R+HTGEK
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++C+ CG + L H R+HTGEK
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+QC CG+ T +S+L H R HTGEK
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ FQC+ C + F +L H R+HTGEK
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region 592-
624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V +S L H R HTGEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG L H RIHTGEK
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG L H RIHTGEK
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|1VLW|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase4- Hydroxy-2-Oxoglutarate Aldolase (Tm0066) From
Thermotoga Maritima At 2.30 A Resolution
pdb|1VLW|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase4- Hydroxy-2-Oxoglutarate Aldolase (Tm0066) From
Thermotoga Maritima At 2.30 A Resolution
pdb|1VLW|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase4- Hydroxy-2-Oxoglutarate Aldolase (Tm0066) From
Thermotoga Maritima At 2.30 A Resolution
Length = 217
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 59 EELREKSAVEIDG-----EIKFQCPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKS 111
EE +EK+ +G EI F PD T++K ++LK+ +G S ++C K+
Sbjct: 34 EEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKA 91
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 379-
411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1977 FQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
F+C C +AF L +H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
++C CG+ T S L +H + HTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
++C C FTR +L +H + HTG++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1514 YECDTCGHGLSSKKSLDDHYRIHTGEK 1540
+EC CG + K +L H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1638 YECDTCGHGLSSKKSLDDHYRIHTGEK 1664
+EC CG + K +L H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|1WA3|A Chain A, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|B Chain B, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|C Chain C, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|D Chain D, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|E Chain E, Mechanism Of The Class I Kdpg Aldolase
pdb|1WA3|F Chain F, Mechanism Of The Class I Kdpg Aldolase
Length = 205
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 59 EELREKSAVEIDG-----EIKFQCPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKS 111
EE +EK+ +G EI F PD T++K ++LK+ +G S ++C K+
Sbjct: 22 EEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKA 79
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 528-
560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+CD C SL H RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+CD C SL H RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C VC ++F +L +H RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C+VC + S+L VH R HTGEK
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKC +C F SL +H R HTG++P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E+PY C+ C+ SF+ SL H +IH G
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 368-
400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+ S+L +H H+GEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG ++ SL H H+GEK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG ++ SL H H+GEK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKC+ C F SL +H TH+G++P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+C CG+ T S NLK H+R H+GEK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1977 FQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+C+ C + F NLK H+RIH+GEK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 340-
372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+V T +S+L H HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 551-
583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 1513 PYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
PYEC CG S K L H R H GEK
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 1637 PYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
PYEC CG S K L H R H GEK
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
Y+CH C F+R L H RTH G++P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C+ CG + +L H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C+ CG + +L H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+CN CG+ SNL H HTGEK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++C C +AF NL H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNT 824
E+PY CE C F+ ++L H +IH G ++
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 431 DRTYPCTYCERKYQSPKTLKEHLKVHTS 458
++ YPC C +++ +TLK HL++HT
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTG 1538
KPY C+ CG ++L H RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTG 1662
KPY C+ CG ++L H RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 780-
812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
+ ++CK C + F + +L H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKGVNTNTLPSN 828
S E+PY C C + FK K + H + H G + PS+
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 284-
316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 1541
KPY+C CG ++ +L H IHTGEK+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 1665
KPY+C CG ++ +L H IHTGEK+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1973 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 2004
K + ++C C +AF NL H IHTGEK+
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 1290 FSCQVCGKSFAAREHLKRHFNN 1311
F C+VC ++FA +EHLKRH+ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1807 FLCEFCNAGFKCRKHLLQHYRTHTKPK 1833
F+CE C F ++HL +HYR+HT K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 1513 PYECDTCGHGLSSKKSLDDHYRIHTGE 1539
PYEC CG + K L H R H GE
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 1637 PYECDTCGHGLSSKKSLDDHYRIHTGE 1663
PYEC CG + K L H R H GE
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 768 ICDTCGSEFNTRKNMLRHTKVHSTERP 794
IC CG F + N++ H K+H+ ERP
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
+ C+ CG+V T +NL +H + HTGE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 792 ERPYICEYCNVSFKEKKSLVRHYKIHKG 819
E P+IC C F K +L+ H KIH G
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTG 37
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 347 EKPYTCEACGKSFPLKRRLNAH 368
EKPY C CGKSF K RL H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIH 31
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
Y+C+ CG+ T S L++H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1187 YKCSDCDKTYTRFYELKCHLMVHRGER 1213
YKCSDC K++T L+ H H GER
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 369-
401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KP++C CG + + L H R+HTGEK
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KP++C CG + + L H R+HTGEK
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 1805 RPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNSFSS 1840
+PF C C + R HL QH R HT K + S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1287 EKPFSCQVCGKSFAAREHLKRH 1308
EKPF C CGKS+ R HL +H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQH 31
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEK 270
FKC EC +SY L +H VHTGEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human Zinc
Finger Protein 406
Length = 36
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1540
KPY+C C + + K +L+ H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 1664
KPY+C C + + K +L+ H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 889 KTHSCIYCEESFSDSKFLDAHVNIEHGK 916
KT+ C YCE+ F+DS L H+ +H K
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSK 28
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 1698 ESFDNCNNLWSHMFIKHEDSDFVCNLCPPDSKIVIKYAHLLERHMKKHHTMQQRCVCSYC 1757
E FD N + + FI VC C P I+ + +++ T ++ C +C
Sbjct: 115 ELFDPTNKRYXYPFI-------VCTNCGPRFTIIEDLPY-----DRENTTXKEFPXCDFC 162
Query: 1758 GNSYANPGNLRTHMVVHSNKNHICEICGKSFK 1789
+ Y +P N R H + C +CG S++
Sbjct: 163 RSEYEDPLNRRYHA-----EPTACPVCGPSYR 189
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 649 TGDRPYTCDVCGKSFVAKKHLNRH 672
+G++PY C CGK+F+ K H H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITH 29
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIHKG 819
S E+PY+C C +F K + H +IH G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 719-
751) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1539
KP+EC CG S L H RIHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTGE 1663
KP+EC CG S L H RIHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTHTGDRP 653
YKCH C +F R L H HTG++P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 31.6 bits (70), Expect = 5.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 318 RKYKCPHPGCPSSFQRFNALQEHMLSHTGEKP 349
+ + C PGC F R + L H SH+G KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 342-
372) Of Human Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 1803 TLRPFLCEFCNAGFKCRKHLLQHYRTHTKPKATNS 1837
T + + C C A F RKHL+QH +TH +S
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS 43
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 31.2 bits (69), Expect = 6.6, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 1539 EKKYVCQQCGASFTQWASLFYHKFSHSET 1567
E Y+C QCG SFTQ SL H+ S S++
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 31.2 bits (69), Expect = 6.6, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 1663 EKKYVCQQCGASFTQWASLFYHKFSHSET 1691
E Y+C QCG SFTQ SL H+ S S++
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 859-
889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNHTGE 1343
Y+C+ CG+ +S L VH R H+GE
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 544-
576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1975 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 2003
R +C C ++F +L H RIHTGEK
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIH 817
S +RP++C C +F K + RH K+H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 425-
457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 1287 EKPFSCQVCGKSFAAR----EHLKRHF 1309
E+P+ C CGK+F EHLKRHF
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|2CTU|A Chain A, Solution Structure Of Zinc Finger Domain From Human Zn
Finger Protein 483
Length = 73
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1941 IHSGEKDYACHICNKVFVRHSTLENHMKAVHEKIRDFQCK 1980
IH G++ C C +F+R STL + EK R C+
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQ 51
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 341-
373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1317 GYQCNVCGRVLTDSSNLKVHMRNHTGEK 1344
G++C+ CG+ +SN H R HTGEK
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 787 KVHSTERPYICEYCNVSFKEKKSLVRHYKIHKGVN 821
+V S ER Y C C ++F+ KK L+RH + VN
Sbjct: 3 EVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVN 37
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 426-
458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYRIHTG 1538
KPY+C CG L++H RIHTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYRIHTG 1662
KPY+C CG L++H RIHTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1512 KPYECDTCGHGLSSKKSLDDHYR-IHTGEK 1540
KPYEC CG SL H+R HTGEK
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1636 KPYECDTCGHGLSSKKSLDDHYR-IHTGEK 1664
KPYEC CG SL H+R HTGEK
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIH 817
S E+PY C C +F + LV+H K+H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 790 STERPYICEYCNVSFKEKKSLVRHYKIH 817
S+ + + CEYCN FK K SL H +IH
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,858,601
Number of Sequences: 62578
Number of extensions: 2884061
Number of successful extensions: 16446
Number of sequences better than 100.0: 203
Number of HSP's better than 100.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8709
Number of HSP's gapped (non-prelim): 6776
length of query: 2227
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2113
effective length of database: 7,839,445
effective search space: 16564747285
effective search space used: 16564747285
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)