RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11585
(2227 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction only].
Length = 467
Score = 50.8 bits (121), Expect = 7e-06
Identities = 74/459 (16%), Positives = 131/459 (28%), Gaps = 40/459 (8%)
Query: 1456 QKVPNKSVTAKFKALFTERSESSESSKKIYECDICKKQVTNRKNMIDHQRSVHELLKPYE 1515
+ S + + +S ++ + C C + +++ H RS H KP +
Sbjct: 5 SSQSSSSNNSVLSSTPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRS-HTGEKPSQ 63
Query: 1516 CDTCGHGLSSK--KSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQKHV 1573
C G S L H R H + + AS S S + + +
Sbjct: 64 CSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKAS--SSSLSSSSSNSNDNN 121
Query: 1574 SASSCHQKVPNKSVTAKFKALFTERSESSESSKKIYECDICKKQVTNRKNMIDHQRSVHE 1633
SS ++ S S+ + + T + N + +
Sbjct: 122 LLSSHSLPPSSRDPQLPD-----LLSISNLRNNPLPGN-NSSSVNTPQSNSLHPPLPANS 175
Query: 1634 LLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 1693
L K SS SL + T +S S + + + +
Sbjct: 176 LSKD---------PSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSS 226
Query: 1694 QKCEESFDNCN---NLWSHMFIKHEDSDFVCNLCP--PDSKIVIKYAHLLERHMKKHHTM 1748
+ S + DS + P + + E
Sbjct: 227 LPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGF 286
Query: 1749 QQRCVCSYCGNSYANPGNLRTHM-----VVHSNKNHIC--EICGKSFKKKDLLREHMIVH 1801
C S++ L H+ S K C +CGK F + D L+ H+++H
Sbjct: 287 SLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH 346
Query: 1802 STLRPFLCEFCNAGFK------CRKHLLQHYRTHTKPKATNSFSSSKCEESFDNCNNLWS 1855
+++ P + N+ K K + S+ C +F +NL
Sbjct: 347 TSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSL 406
Query: 1856 HMFIKHENSDFVCNLCPPDSKIVIKYAHLLVRHMKKHHT 1894
H I H + PP + L+ H K H
Sbjct: 407 H-IITHLSFRPYNCKNPP-CSKSFNRHYNLIPHKKIHTN 443
Score = 33.9 bits (77), Expect = 1.1
Identities = 76/442 (17%), Positives = 115/442 (26%), Gaps = 53/442 (11%)
Query: 325 PGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYR---CH 381
P C SF R L H+ SHTGEKP C G R L +
Sbjct: 37 PNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSK 96
Query: 382 ICGSTMSNAANFKDHLDSHRGEKKYTCETCGTG---------FAYKSSLYHHRFTHIKDR 432
+ S A++ S + S + +
Sbjct: 97 SLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNS 156
Query: 433 TYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCG-SEFHTRKNLLTHIRTHNTDRTH 491
+ T P K +S I S + +N +
Sbjct: 157 SSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSS 216
Query: 492 VCELCNANLKTRRSLLRHYTTHGTQLAAIAFNNSQSSSSDHRLVKSEVQILEGDRIKYKC 551
L N++ SL + + + ++ + S SSSD SE
Sbjct: 217 DQNLENSSS----SLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRS--------- 263
Query: 552 PLCDRIYTSFSETKRHFEVHSGERK-YTCSICSKCFFIKNRLSEHYRRVHKMRVSMARTN 610
L S S + G C+ F + L+ H R V N
Sbjct: 264 SLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSV----------N 313
Query: 611 DVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTGDRPYTC--DVCGKSF----V 664
+S + +C +F+R D+L+ H+ HT P F
Sbjct: 314 HSGESLKPFSCPY-----SLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368
Query: 665 AKKHLNRHYNCSHAGFGYQC---NICGRVMSDSTNFKDHLDNHK--GEKKYTCEICGTGF 719
+ + N C R +N H+ H C F
Sbjct: 369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSF 428
Query: 720 MYKSSLHHHKFSHSKERMFQCS 741
+L HK H+ CS
Sbjct: 429 NRHYNLIPHKKIHTNHAPLLCS 450
Score = 33.9 bits (77), Expect = 1.1
Identities = 74/467 (15%), Positives = 126/467 (26%), Gaps = 55/467 (11%)
Query: 244 FKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTSRD 303
CP C S+ L +H+ HTGEK CS L H N S
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 304 HDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKR 363
+ + S+ N L H L + P + S
Sbjct: 94 NSKSLPLSNSKAS----SSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNN 149
Query: 364 RLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYH 423
L + + + + L ++ + S L
Sbjct: 150 PLPGNNSS------------SVNTPQSNSLHPPLPANS--------LSKDPSSNLSLLIS 189
Query: 424 HRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIR 483
+ + + Y P + + ++S + T +
Sbjct: 190 SNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSL--PLTTNSQLSPKSLLSQSPSS 247
Query: 484 THNTDRTHVCELCNANLKT--RRSLLRHYTTHGTQLAAI-------AFNNSQSSSSDH-R 533
++D + + + + N S S SS R
Sbjct: 248 LSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTR 307
Query: 534 LVKSEVQILEGDRIKYKCP--LCDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNR 591
++S E + + CP LC ++++ KRH +H+ SI + N
Sbjct: 308 HLRSVNHSGESLK-PFSCPYSLCGKLFSRNDALKRHILLHT-------SISPAKEKLLNS 359
Query: 592 LSEHYRRVHKMRVSMARTN-DVKKSAEISVDGVTKYKCHICDSIFTRYDSLRLHVRTHTG 650
S+ ++ + D+K + + C F R +L LH+ TH
Sbjct: 360 SSKFSPLLNNEPPQSLQQYKDLKNDKKSETLS------NSCIRNFKRDSNLSLHIITHLS 413
Query: 651 DRP--YTCDVCGKSFVAKKHLNRHYNCSHAGFGYQCNICGRVMSDST 695
RP C KSF +L H C+I D
Sbjct: 414 FRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLD 460
Score = 33.9 bits (77), Expect = 1.1
Identities = 69/434 (15%), Positives = 124/434 (28%), Gaps = 31/434 (7%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQV--CGKSFAAREHLKRHFNNIHM-KVGY 1318
CP C SR + L +H+R HTGEKP C C KSF+ L RH H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 1319 QCNVCGRVLTDSSNLKVHMRNHTGEKKYVCEICGKGFTQ---------WASHYYHKFTHS 1369
+ +S+ + + + + S+ +
Sbjct: 94 NSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPG 153
Query: 1370 EERSFKCSYCAMTFRCPRTLTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTGR 1429
S + + + P K + + + + S
Sbjct: 154 NNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLS--SSYSI 211
Query: 1430 PHQCDVCNAKFKLRKYLKHVSASSCHQKVPNKSVTAKFKALFTERSESSESSKKIYECDI 1489
P N + ++ + + ++S ++ S+SS S+ + +
Sbjct: 212 PSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSS------SDSSSSASESPRSSL 265
Query: 1490 CKKQVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYR--IHTGEKKYVCQQ- 1546
+ S P + C S L H R H+GE
Sbjct: 266 PTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCP 325
Query: 1547 ---CGASFTQWASLFYHKFSHSETRNQKHVSASSCHQKVPNKSVTAKFKALFTERSESSE 1603
CG F++ +L H H+ K +S + + + + +
Sbjct: 326 YSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSS--SKFSPLLNNEPPQSLQQYKDLKN 383
Query: 1604 SSKKIYECDICKKQVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHT 1661
K + C + N+ H H +PY C C + +L H +IHT
Sbjct: 384 DKKSETLSNSCIRNFKRDSNLSLH-IITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442
Query: 1662 GEKKYVCQQCGASF 1675
+C +
Sbjct: 443 NHAPLLCSILKSFR 456
Score = 32.7 bits (74), Expect = 2.2
Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 7/152 (4%)
Query: 1982 CDRAFFDVYNLKLHMRIHTGEKKYVC--ETCGASFVHWGSLNIHNYSHINAQ-FVCSFCG 2038
C +F + +L H+R HTGEK C C SF L+ H +H N + S
Sbjct: 39 CTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSL 98
Query: 2039 NTYKNPKSLDSHIRNSHTNRKKSICDDCTKAMSTP---APSSKSVCIEHSNLIPKCH-SC 2094
+ S S +S + ++ + S+ P S+ +N +P + S
Sbjct: 99 PLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSS 158
Query: 2095 QKCEESFDNCNNLWSHMFIKHENSDFVCNLCP 2126
+S L ++ K +S+ +
Sbjct: 159 VNTPQSNSLHPPLPANSLSKDPSSNLSLLISS 190
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 1332 NLKVHMRNHTGEKKYVCEICGKGFTQ 1357
NL+ HMR HTGEK Y C +CGK F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 36.2 bits (84), Expect = 0.004
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 1276 SLQQHMRLHTGEKPFSCQVCGKSFA 1300
+L++HMR HTGEKP+ C VCGKSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 35.4 bits (82), Expect = 0.007
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 1991 NLKLHMRIHTGEKKYVCETCGASFVH 2016
NL+ HMR HTGEK Y C CG SF
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 35.4 bits (82), Expect = 0.008
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 640 SLRLHVRTHTGDRPYTCDVCGKSFV 664
+LR H+RTHTG++PY C VCGKSF
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 33.9 bits (78), Expect = 0.024
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 336 ALQEHMLSHTGEKPYTCEACGKSF 359
L+ HM +HTGEKPY C CGKSF
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 32.4 bits (74), Expect = 0.088
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 1528 SLDDHYRIHTGEKKYVCQQCGASFTQ 1553
+L H R HTGEK Y C CG SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.4 bits (74), Expect = 0.088
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 1652 SLDDHYRIHTGEKKYVCQQCGASFTQ 1677
+L H R HTGEK Y C CG SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1935 LKAHLDIHSGEKDYACHICNKVFVR 1959
L+ H+ H+GEK Y C +C K F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 29.3 bits (66), Expect = 1.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1417 NLLSHMKIHSTGRPHQCDVCNAKFK 1441
NL HM+ H+ +P++C VC F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 258 ELKKHLAVHTGEKHFVCSVCQRGF 281
L++H+ HTGEK + C VC + F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 28.5 bits (64), Expect = 2.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 565 KRHFEVHSGERKYTCSICSKCF 586
+RH H+GE+ Y C +C K F
Sbjct: 3 RRHMRTHTGEKPYKCPVCGKSF 24
Score = 27.4 bits (61), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 781 NMLRHTKVHSTERPYICEYCNVSFK 805
N+ RH + H+ E+PY C C SF
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 27.4 bits (61), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 392 NFKDHLDSHRGEKKYTCETCGTGFAY 417
N + H+ +H GEK Y C CG F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.4 bits (61), Expect = 6.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1794 LREHMIVHSTLRPFLCEFCNAGFKC 1818
LR HM H+ +P+ C C F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.0 bits (60), Expect = 8.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 696 NFKDHLDNHKGEKKYTCEICGTGF 719
N + H+ H GEK Y C +CG F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 38.5 bits (89), Expect = 0.043
Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 19/80 (23%)
Query: 314 VDGVRKYKCPHPGCPSSFQRFNALQEHML---------------SHTG----EKPYTCEA 354
V + YKCP GC ++ N L+ HML +KPY CE
Sbjct: 344 VKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV 403
Query: 355 CGKSFPLKRRLNAHYNKWHL 374
C K + L H H
Sbjct: 404 CDKRYKNLNGLKYHRKHSHD 423
Score = 34.3 bits (78), Expect = 0.76
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 1286 GEKPFSCQV--CGKSFAAREHLKRHFNNIHMKVGYQCNVCGRVLTDSSNLKVHMRNHTGE 1343
KP+ C V C K + + LK HM G+ + L ++ + + +
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLK-----YHMLHGH----QNQKLHENPSPEKMNIFSAKD 396
Query: 1344 KKYVCEICGKGFTQWASHYYHKFTHS 1369
K Y CE+C K + YH+ HS
Sbjct: 397 KPYRCEVCDKRYKNLNGLKYHR-KHS 421
Score = 33.5 bits (76), Expect = 1.5
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 1975 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYVCETCGASFVHWGSLNIHNYSHINAQF 2032
+ ++C V C++ + + LK HM +H + + + E +NI +S + +
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHM-LHGHQNQKLHENPSPE-----KMNI--FSAKDKPY 399
Query: 2033 VCSFCGNTYKNPKSLDSHIRNSH 2055
C C YKN L H ++SH
Sbjct: 400 RCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 34.9 bits (80), Expect = 0.11
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRLHTGEKPFSCQVCGKSFAAREHLKRHFNNIH 1313
Y CPLC S SL+QH+R K C VCGK F + H H
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKH 123
Score = 32.9 bits (75), Expect = 0.64
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 75 FQCPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKSFTTKKCLREHYKKLHTI 128
+ CP C + LK+H+R ++ + C C K F +H K H I
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIR--YTEHSKVCPVCGKEFRNTDSTLDHVCKKHNI 125
Score = 31.0 bits (70), Expect = 3.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 623 VTKYKCHICDSIFTRYDSLRLHVR--THTGDRPYTCDVCGKSF---------VAKKH 668
V+ Y C +C F+ SL+ H+R H+ C VCGK F V KKH
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHS----KVCPVCGKEFRNTDSTLDHVCKKH 123
Score = 31.0 bits (70), Expect = 3.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 433 TYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHI-RTHN 486
Y C C + S +LK+H++ V C CG EF + L H+ + HN
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSKV---CPVCGKEFRNTDSTLDHVCKKHN 124
>gnl|CDD|220887 pfam10844, DUF2577, Protein of unknown function (DUF2577). This
family of proteins has no known function.
Length = 101
Score = 33.8 bits (78), Expect = 0.21
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 1874 DSKIVIKYAHLLVRHMKKHHTMQLSISSVSKHIKSKTQIFVDG 1916
D K+++ L++ + K +T +++ ++ F DG
Sbjct: 35 DQKLILDKDFLIITELLKDYTRTITVEGNTETSNRGKITFTDG 77
>gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 36.3 bits (85), Expect = 0.22
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 23/66 (34%)
Query: 1376 CSYCAMTFRCPRT---LTEHKKTHVLSDVKHVCNTCGNEYNTRKNLLSHMKIHSTGRPHQ 1432
C C CP LT H+ L C+ CG + P
Sbjct: 384 CRDCGWVAECPHCDASLTLHRFQRRL-----RCHHCG---------------YQEPIPKA 423
Query: 1433 CDVCNA 1438
C C +
Sbjct: 424 CPECGS 429
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 36.2 bits (83), Expect = 0.23
Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 27/174 (15%)
Query: 538 EVQILEGDRIKYKCPL--CDRIYTSFSETKRHFEVHSGERKYTCSICSKCFFIKNRLSEH 595
+V+ D + +KCP C R S E K+H++ G CS C
Sbjct: 141 DVRDEMEDLLSFKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSECIG----------- 187
Query: 596 YRRVHKMRVSMARTNDVKKSAEISVDGV---TKYKCHICDSIFTRYDSLRLHVRTHTGDR 652
++ + + R++ ++ ++ C C F D LR H R +
Sbjct: 188 NKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH-EA 246
Query: 653 PYTCDVCGKS----FVAKKHLNRHYNCSHAGFGYQCNICGRVMSDSTNFKDHLD 702
+ CD+ G F + + L H+ +H Y C + F H +
Sbjct: 247 CHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTE 296
Score = 34.2 bits (78), Expect = 0.92
Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 29/169 (17%)
Query: 1183 DQVRYKC--SDCDKTYTRFYELKCHLMVHRGERTMSCTMCDKSFYQVSRLTEHYKRSHRM 1240
D + +KC S C + ELK H G + C+ C + + +
Sbjct: 148 DLLSFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSEC---------IGNKKDFWNEI 196
Query: 1241 KVTRVNQLKKKSEICIEGETKYKCPLCPSITSRY---DSLQQHMRLHTGEKPFSCQVCGK 1297
++ R + L+ +E E PLC + D L++H R + +C +C
Sbjct: 197 RLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCR----LRHEACHICDM 252
Query: 1298 S-------FAAREHLKRHFNNIHMKVGYQCNVCGR--VLTDSSNLKVHM 1337
F + E L+ HF N H +Q G+ V + L H+
Sbjct: 253 VGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHL 301
Score = 31.1 bits (70), Expect = 8.7
Identities = 43/167 (25%), Positives = 55/167 (32%), Gaps = 30/167 (17%)
Query: 242 VKFKCPE--CPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNF 299
+ FKCP+ C R G+ ELKKH G +CS C N+ F
Sbjct: 150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIG--------NKKDFWNEIRLF 199
Query: 300 TS---RDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHM-LSHTGEKPYTCEAC 355
S RDH E G C C F + L+ H L H E + C+
Sbjct: 200 RSSTLRDHKNGGLEEEGFKG--HPLCIF--CKIYFYDDDELRRHCRLRH--EACHICDMV 253
Query: 356 GKS----FPLKRRLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLD 398
G F L AH+ H Y C + F H +
Sbjct: 254 GPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTE 296
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 32.1 bits (73), Expect = 0.41
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 1262 YKCPLCPSITSRYDSLQQHMRL-HTGEKPFSCQVCGKSFAAREHLKRHF 1309
+KCP+C T +L+QH R HT K C VC KS+ L +HF
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTLTK---CPVCNKSY---RRLNQHF 44
Score = 29.4 bits (66), Expect = 3.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 626 YKCHICDSIFTRYDSLRLHVR-THTGDRPYTCDVCGKSFVAKKHLNRHY 673
+KC IC +L+ H R HT + C VC KS+ + LN+H+
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTLTK---CPVCNKSY---RRLNQHF 44
Score = 29.4 bits (66), Expect = 4.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 153 YKCPECGFMVKRFQGLREHIVSVHAQVKDHVCIVCGAAFGLARRLKTHYIRRHTVNILT 211
+KCP CGF L++H H K C VC ++ RRL H+ ++ + L
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTLTK---CPVCNKSY---RRLNQHFYSQYDIEHLI 54
>gnl|CDD|226397 COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms].
Length = 176
Score = 33.6 bits (77), Expect = 0.55
Identities = 30/152 (19%), Positives = 45/152 (29%), Gaps = 52/152 (34%)
Query: 463 HICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTHGTQLAAIAF 522
ICQ C T T I +VCE C A
Sbjct: 1 MICQNCQQNPATIH--FTKIINGEKIELYVCETC------------------------AK 34
Query: 523 NNSQSSSSDHRLVKSEVQILEG--------------DRIKYKCPLCDRIYTSFSETKRHF 568
+S++ +H LV S +L G D C C + F ++
Sbjct: 35 PHSEAYDIEHILVFSIHNVLSGELDNLKTKWQIEQEDEELLGCHNCGMTFKEFIQSGL-- 92
Query: 569 EVHSGERKYTCSICSKCFFIKNRLSEHYRRVH 600
+ C+ C K F ++++S RV
Sbjct: 93 --------FGCAECYKTF--ESQISPIITRVQ 114
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 34.2 bits (79), Expect = 0.83
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 27/122 (22%)
Query: 447 KTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRTH--------------- 491
+ ++ +K++ G V C TC + + +T I+ + H
Sbjct: 272 EQFQKVIKMYEKGGV---CPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEI 328
Query: 492 VCELCNANLKTRRSLLRHYTTHGTQLAAIAFNNSQSSSSDHRLVKSEVQILEGDRIKYKC 551
+ E N K L +T+ L + + VK+ ++ L+ + +
Sbjct: 329 MDEF-NEQSKKLLELKNKISTNKQSLITLVDKAKK--------VKAAIEELQAEFVDNAE 379
Query: 552 PL 553
L
Sbjct: 380 EL 381
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 29.0 bits (65), Expect = 1.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1779 HICEICGKSFKKKDLLREHMIVH 1801
+ C CGK FK K LREHM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 6.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1318 YQCNVCGRVLTDSSNLKVHMRNH 1340
Y+C CG+V S L+ HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 6.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 626 YKCHICDSIFTRYDSLRLHVRTH 648
Y+C C +F +LR H+RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.0 bits (60), Expect = 7.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 795 YICEYCNVSFKEKKSLVRHYKIH 817
Y C C FK K +L H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.0 bits (60), Expect = 8.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1977 FQCKVCDRAFFDVYNLKLHMRIH 1999
++C C + F L+ HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 33.2 bits (76), Expect = 1.9
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 445 SPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRT-HNTD 488
SP K+ ++ S ++C C +EF + L H RT H+
Sbjct: 59 SPPQSKKATPINPS---SYVCNVCMAEFSSMDQLAEHQRTTHSIG 100
>gnl|CDD|236994 PRK11823, PRK11823, DNA repair protein RadA; Provisional.
Length = 446
Score = 33.1 bits (77), Expect = 2.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1541 KYVCQQCGASFTQWA 1555
YVCQ+CGA +W
Sbjct: 7 AYVCQECGAESPKWL 21
Score = 33.1 bits (77), Expect = 2.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1665 KYVCQQCGASFTQWA 1679
YVCQ+CGA +W
Sbjct: 7 AYVCQECGAESPKWL 21
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger is
the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be
any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those that
are important for the stable fold of the zinc finger. The
final position can be either his or cys. The C2H2 zinc
finger is composed of two short beta strands followed by
an alpha helix. The amino terminal part of the helix
binds the major groove in DNA binding zinc fingers. The
accepted consensus binding sequence for Sp1 is usually
defined by the asymmetric hexanucleotide core GGGCGG but
this sequence does not include, among others, the GAG
(=CTC) repeat that constitutes a high-affinity site for
Sp1 binding to the wt1 promoter.
Length = 22
Score = 28.5 bits (64), Expect = 2.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1780 ICEICGKSFKKKDLLREHMIVH 1801
C CGKSF +K L+ H+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 1319 QCNVCGRVLTDSSNLKVHMRNH 1340
+C CG+ + SNLK H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|238415 cd00800, INT_Lambda_C, Lambda integrase, C-terminal catalytic
domain. Lambda-type integrases catalyze site-specific
integration and excision of temperate bacteriophages and
other mobile genetic elements to and from the bacterial
host chromosome. They belong to the superfamily of DNA
breaking-rejoining enzymes, which share the same fold in
their catalytic domain and the overall reaction
mechanism. The phage lambda integrase can bridge two
different and well-separated DNA sequences called arm-
and core-sites. The C-terminal domain binds, cleaves
and re-ligates DNA strands at the core-sites, while the
N-terminal domain is largely responsible for
high-affinity binding to the arm-type sites.
Length = 162
Score = 31.1 bits (71), Expect = 3.2
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 25 LCEKSSESTIRAPSMLMKHWRRVHKSAGVDLL----TEEELREKSAVEIDGEIKF 75
+ + + + L + +R+ K+AGV T ++R K+A + + + K
Sbjct: 89 VHTRPGGKQV-SAKTLSRAFRKARKAAGVKWGGDPPTFHDIRAKAASDYEEQGKD 142
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 28.9 bits (64), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 465 CQTCGSEFHTRKNLLTHIRTHNTD 488
C CG + RK+++TH+R HNT+
Sbjct: 8 CPICGEIYIKRKSMITHLRKHNTN 31
Score = 28.5 bits (63), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 2032 FVCSFCGNTYKNPKSLDSHIRNSHTNRKKSIC 2063
+ C CG Y KS+ +H+R +TN K S C
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNC 37
>gnl|CDD|224245 COG1326, COG1326, Uncharacterized archaeal Zn-finger protein
[General function prediction only].
Length = 201
Score = 31.3 bits (71), Expect = 3.9
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 20/87 (22%)
Query: 853 TQEIDLPCEMCGELNLFSKYCKEHGIV----CEES--------DTYKKKTHSCIYC--EE 898
T+EI + C CG + + KE G CEE T K I EE
Sbjct: 2 TEEIYIECPSCGSEEVSHEVIKERGREPLVRCEECGTVHPAIIKTPKPVRVRVIVSRHEE 61
Query: 899 SFSDSKFLDAHVNIEHGKRVHGDDEFE 925
SF+ V ++ G+ + DE E
Sbjct: 62 SFTKE------VELDPGETLKVGDEIE 82
>gnl|CDD|187805 cd09674, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Cas6f. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6f is an endoribonuclease that generates crRNA; This
family is specific for CRISPR/Cas system I-F subtype;
Possesses RRM fold; also known as Csy4 family.
Length = 186
Score = 30.9 bits (70), Expect = 4.9
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 26 CEKSSESTIRAPSMLMKHWRRVHKSAGVDLLTEEELREKSAVEIDGEIKFQCPDCHTMMK 85
S ST+ A + ++ RR + L E+ D E + + PD T
Sbjct: 81 ASISEISTVPADTSHVRTVRRKQTKSSAARLRR--RLERRQGINDEEARPRAPDKTTQRA 138
Query: 86 NFAYLKKHVRDNHSGETF 103
N YL ++ SG+ F
Sbjct: 139 NLPYL--SLKSASSGQRF 154
>gnl|CDD|235290 PRK04351, PRK04351, hypothetical protein; Provisional.
Length = 149
Score = 30.6 bits (70), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 350 YTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICG 384
Y C++CG+ + KRR+N K YRC C
Sbjct: 113 YECQSCGQQYLRKRRINT--------KRYRCGKCR 139
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 27.6 bits (62), Expect = 5.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 463 HICQTCGSEFHTRKNLLTHIRTH 485
H C CG F + + L H ++H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|233929 TIGR02563, cas_Csy4, CRISPR-associated protein Cas6/Csy4, subtype
I-F/YPEST. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) is a widespread family of
prokaryotic direct repeats with spacers of unique
sequence between consecutive repeats. This protein
family, typified by YPO2462 of Yersinia pestis, is a
CRISPR-associated (Cas) family strictly associated with
the Ypest subtype of CRISPR/Cas locus. This family is
designated Csy4, for CRISPR/Cas Subtype Ypest protein 4
[Mobile and extrachromosomal element functions, Other].
Length = 185
Score = 30.5 bits (69), Expect = 7.0
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 26 CEKSSESTIRAPSMLMKHWRRVHKSAGVDLLTEEELREKSAVEIDGEIKFQCPDCHTMMK 85
S ST+ A + + RR + L E+ D E + + PD T
Sbjct: 80 ASISEISTVPADCVKRRTVRRKQTKSSAARLRR--RLERRQGINDEEARPRAPDKTTQRA 137
Query: 86 NFAYLKKHVRDNHSGETF 103
N YL ++ SG+ F
Sbjct: 138 NLPYL--SLKSASSGQRF 153
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This family
contains two copies of a C2H2-like zinc finger domain.
Length = 100
Score = 29.2 bits (66), Expect = 7.3
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 1216 SCTMCDKSFYQVSRLTEHYKRSHRM---KVTRVNQLKK-----KSEICIEGETKYKCPLC 1267
C C+ + V EH +SH + + L+ + +I +C C
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHE----GNECLYC 56
Query: 1268 PSITSRYDSLQQHMR 1282
++L+QHMR
Sbjct: 57 GKQFKSLEALRQHMR 71
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase.
Members of this family are the enzyme
glucose-1-phosphate cytidylyltransferase, also called
CDP-glucose pyrophosphorylase, the product of the rfbF
gene [Cell envelope, Biosynthesis and degradation of
surface polysaccharides and lipopolysaccharides].
Length = 254
Score = 30.5 bits (69), Expect = 8.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 918 VHGDDEFECYQCNQCGVELYLGREAFLNHMRHIHSDDTTHDMLDNYVVKH 967
HG ++F C CG + Y+ +E F N+ +H D T M DN + H
Sbjct: 42 HHGINDF--IIC--CGYKGYVIKEYFANY--FLHMSDVTFHMADNTMEVH 85
>gnl|CDD|220661 pfam10263, SprT-like, SprT-like family. This family represents a
domain found in eukaryotes and prokaryotes. The domain
contains a characteristic motif of the zinc
metallopeptidases. This family includes the bacterial
SprT protein.
Length = 153
Score = 29.7 bits (67), Expect = 8.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 350 YTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGST 386
Y C +CG+ +P KRR+ H YRC CG
Sbjct: 120 YRCGSCGQLYPRKRRIRRHK--------YRCGRCGGK 148
>gnl|CDD|179886 PRK04860, PRK04860, hypothetical protein; Provisional.
Length = 160
Score = 29.9 bits (68), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 1513 PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGA 1549
PY C H L+ ++ H R+ GE Y C++CG
Sbjct: 119 PYRCKCQEHQLTVRR----HNRVVRGEAVYRCRRCGE 151
Score = 29.9 bits (68), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 1637 PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGA 1673
PY C H L+ ++ H R+ GE Y C++CG
Sbjct: 119 PYRCKCQEHQLTVRR----HNRVVRGEAVYRCRRCGE 151
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 30.9 bits (70), Expect = 9.5
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 23/77 (29%)
Query: 750 PKTLKEHEQTHRSGDI------KHICDTC-----GSEFNTRKNMLRHTKVHSTERPYICE 798
+L+EHE+ + +I ++ DT E+N + Y CE
Sbjct: 155 AASLREHEEFTKVKNIATIELGRYEIDTWYFSPFPPEYNDCSKL------------YFCE 202
Query: 799 YCNVSFKEKKSLVRHYK 815
+C K K+ L RH K
Sbjct: 203 FCLKFMKRKEQLQRHMK 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.133 0.432
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 105,515,082
Number of extensions: 9803982
Number of successful extensions: 10705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10592
Number of HSP's successfully gapped: 300
Length of query: 2227
Length of database: 10,937,602
Length adjustment: 112
Effective length of query: 2115
Effective length of database: 5,969,954
Effective search space: 12626452710
Effective search space used: 12626452710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (29.6 bits)