BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11588
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHT 344
+ GEK + C C K F R +L H + H + ++C CGK+F+D ++ H R HT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 345 GEKKYVCETCGASFVQWGSLNQHNLVHTAVNV-VCSYCGNTYKNPKSLESHIRYAHTIRQ 403
GEK Y C CG SF Q +L H HT C CG ++ L +H R HT +
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEK 132
Query: 404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
C CGK F + L H HT ++P+ C C +F + L H + H K
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 76/166 (45%), Gaps = 3/166 (1%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
Y CP+C H H+GEK + C C K F ++L H + H + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCG 382
CGK+F+ N++ H R HTGEK Y C CG SF Q L H HT C CG
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
++ +L +H R HT + C CGK F + L H HT
Sbjct: 141 KSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 169 SVCIKHSNLIP--KCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCP---SHSKVLV 223
S + + L P K ++C +C +SF ++L H + C C S K L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 224 RY--VHSAVRHMKKHHKLQLSIPKAHNYFRKKTVIHVNKKVN-----YKCPDCSAILLSY 276
R+ H+ + K P+ F ++ + +++ + Y CP+C
Sbjct: 67 RHQRTHTGEKPYK--------CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118
Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNM 336
+H H+GEK + C C K F R NL H + H + ++C CGK+F+ +
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDAL 177
Query: 337 KVHMRIHTGEK 347
VH R HTG+K
Sbjct: 178 NVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV- 377
+ ++C CGK+F+ +N++ H R HTGEK Y C CG SF Q L +H HT
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 378 CSYCGNTYKNPKSLESHIR 396
C CG ++ L H R
Sbjct: 63 CPECGKSFSRSDHLSRHQR 81
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKK 348
EK + C C K F + NL H + H + ++C CGK+F+ ++++ H R HTGEK
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 349 YVCETCGASFVQWGSLNQHNLVH 371
Y C CG SF + L++H H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 28/113 (24%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKS 405
EK Y C CG SF Q +L +H HT YK
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKP--------YK------------------- 34
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
C CGK F L++H HT ++P+ C C +F HL +H + H K
Sbjct: 35 -CPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 250 FRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVC 309
+K H +K YKCP+C H H+GEK + C C K F R +L
Sbjct: 20 LQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSR 78
Query: 310 HIKA 313
H +
Sbjct: 79 HQRT 82
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
C IC K F R L H+ +H R + C CGK F ++MK H IHTGEK + C+
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 354 CGASFVQWGSLNQHNLVHTA 373
CG +F Q +L H+ HT
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 263 NYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQ 322
++ C C ++HL IHS + + C C K F + ++ H +H + H+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHK 59
Query: 323 CSVCGKAFADITNMKVHMRIHTG 345
C VCGKAF+ +N+ H R HTG
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
C CG ++K +L +H+ H+ + C CGK F K +K+H +HT ++P C +
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 438 CPSAFKLKKHLQQHYKVH 455
C AF +L H + H
Sbjct: 63 CGKAFSQSSNLITHSRKH 80
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 349 YVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRYAHTIRQKSIC 407
+ C+ CG SF + +L+ H L+H+ C YCG + ++ H + HT + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 408 DVCGKEFKMKKRLKEHMAVHT 428
VCGK F L H HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 31/135 (22%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNT 384
C K F D + M+ H+ H G + +VC CG +FV+ L +H LVHT C++ G
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-- 69
Query: 385 YKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC--DMCPSAF 442
CGK F + L+ H+ +HT DRP+VC D C F
Sbjct: 70 -------------------------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 443 KLKKHLQQHYKVHLK 457
+L+ H H K
Sbjct: 105 AQSTNLKSHILTHAK 119
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVN- 375
R H C+ CGKAF + + +K H +HTGEK + C E CG F +L H +HT
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 376 VVCSY--CGNTYKNPKSLESHI 395
VC + C + +L+SHI
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHI 114
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 256 IHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKA 313
+H + + C +C + H +H+GEK C C K F NL H++
Sbjct: 27 LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR- 85
Query: 314 VHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEK 347
+H R + C C K FA TN+K H+ H K
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAV-NVVCSY-- 380
CG A+ ++ H+ HTGEK + C E C F L +H+L HT N C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSIC------DVCGKEFKMKKRLKEHMAVHTTDRPFV 434
C + +++ H H I+ IC + CGK FK +LK H HT P+
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIK---ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 435 C--DMCPSAFKLKKHLQQHYKVH 455
C + C F L L++H KVH
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVH 159
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYC 381
+C C K F +KVH R HTGEK + C CG + + +L L H A N +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENL----LEHEARNCM---- 60
Query: 382 GNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSA 441
+ Q C VC + F+ + L+ HM HT + P+ C C
Sbjct: 61 -----------------NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ 103
Query: 442 FKLKKHLQQH 451
F KK LQ H
Sbjct: 104 FMQKKDLQSH 113
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 265 KCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQ-- 322
+CP C LS H H+GEK C C K + R NL+ H +A + R Q
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQVF 67
Query: 323 -CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH 367
CSVC + F +++HM HTGE Y C +C F+Q L H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 53 TKDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQ 112
++ V+ C+ C++ F + L LH+ + H M + C C + FM+ DL+ HM
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHM-VSHTGEM-----PYKCSSCSQQ-FMQKKDLQSHMI 115
Query: 113 DYH 115
H
Sbjct: 116 KLH 118
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F + NL HI+ +H + QC +C + F+ T + H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + ++H +H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ TN+ H+RIHTG+K + C C +F Q LNQH HT
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIRYAHTIRQK 404
C CG + + + H + +RQK
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH--LRQK 89
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + +L++HIR HT ++ C +C + F L +H+ HT ++PF CD+C
Sbjct: 12 CDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
F +H K+HL++
Sbjct: 71 KFATLHTRDRHTKIHLRQ 88
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C +H+ IH+G+K C IC + F ++ L HI+ H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA + H +IH +K
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 256 IHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH 315
IH +K ++C C + G H+ H+GEK C IC + F H + H
Sbjct: 28 IHTGQKP-FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF-----ATLHTRDRH 81
Query: 316 EKV 318
K+
Sbjct: 82 TKI 84
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F + NL HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ TN+ H+RIHTG+K + C C +F Q SLN H HT
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIRYAHT---IRQK 404
C CG + H R HT +RQK
Sbjct: 63 FACDICGRKFAT-----LHTRTRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + +L++HIR HT ++ C +C + F + L H+ HT ++PF CD+C
Sbjct: 12 CDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
F +H K+HL++
Sbjct: 71 KFATLHTRTRHTKIHLRQ 88
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C +H+ IH+G+K C IC + F + +L HI+ H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA + H +IH +K
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CS 379
H+C VCGK F+ +K HMR HTG K Y C+TC + SLN+H +H+ C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 380 YCGNTYKNPKSLESHIR 396
C +N L H+R
Sbjct: 69 ICPYASRNSSQLTVHLR 85
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 292 HCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
H C +C K F R L H++ H V+ ++C C A AD +++ H+RIH+ E+ + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 352 ETCGASFVQWGSLNQHNLVHTA 373
+ C + L H HT
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
C CG + L++H+R HT + C C L +H+ +H+ +RPF C +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 438 CPSAFKLKKHLQQHYKVH 455
CP A + L H + H
Sbjct: 70 CPYASRNSSQLTVHLRSH 87
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
+KC C +H+ H+G K + C C +L H++ +H R +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 324 SVCGKAFADITNMKVHMRIHTGE 346
+C A + + + VH+R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F R +L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + L HIR HT ++ C +C + F L H+ HT ++PF CD+C
Sbjct: 12 CDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
F ++H K+HL++
Sbjct: 71 KFARSDERKRHTKIHLRQ 88
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ ++ H+RIHTG+K + C C +F + L H HT
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIR 396
C CG + + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN 375
R ++C CGK+F+ +++ H R HTGEK Y C+ CG +F+Q L H+ VHT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 402 RQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHL 456
R++ CD CGK F L +H HT ++P+ CD C AF + HL H++VH
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRP 432
C CG ++ + L H R HT + CD CGK F + L H VHT P
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 259 NKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCH 310
++ YKC +C + H H+GEK + C C K F++ +L+ H
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
C C K F +L H + H + ++C CGKAF +++ H R+HTG
Sbjct: 21 CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F R L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + L HIR HT ++ C +C + F L H+ HT ++PF CD+C
Sbjct: 12 CDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
F ++H K+HL++
Sbjct: 71 KFARSDERKRHTKIHLRQ 88
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ + H+RIHTG+K + C C +F + L H HT
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIR 396
C CG + + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F R L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + L HIR HT ++ C +C + F L H+ HT ++PF CD+C
Sbjct: 11 CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 441 AFKLKKHLQQHYKVHLKK 458
F ++H K+HL++
Sbjct: 70 KFARSDERKRHTKIHLRQ 87
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 62
Query: 322 QCSVCGKAFADITNMKVHMRIH 343
C +CG+ FA K H +IH
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ + H+RIHTG+K + C C +F + L H HT
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 376 VVCSYCGNTYKNPKSLESHIR 396
C CG + + H +
Sbjct: 62 FACDICGRKFARSDERKRHTK 82
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F R L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + L HIR HT ++ C +C + F L H+ HT ++PF CD+C
Sbjct: 12 CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
F ++H K+HL++
Sbjct: 71 KFARSDERKRHTKIHLRQ 88
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ + H+RIHTG+K + C C +F + L H HT
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIR 396
C CG + + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F NL HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + + +L HIR HT ++ C +C + F L H+ HT ++PF CD+C
Sbjct: 12 CDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLKK 458
F ++H K+HL++
Sbjct: 71 KFARSDERKRHTKIHLRQ 88
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+D +N+ H+RIHTG+K + C C +F + L H HT
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIR 396
C CG + + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F R L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C + L HIR HT ++ C +C + F L H+ HT ++PF CD+C
Sbjct: 12 CDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 441 AFKLKKHLQQHYKVHLK 457
F ++H K+HL+
Sbjct: 71 KFARSDERKRHTKIHLR 87
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIH 343
C +CG+ FA K H +IH
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ + H+RIHTG+K + C C +F + L H HT
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIR 396
C CG + + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C G T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F + +L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVH 371
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Query: 346 EKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQ 403
E+ Y C E+C F Q GSL +H +HT Q
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG-----------------------------Q 32
Query: 404 KSI-CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
K C +C + F L H+ HT ++PF CD+C F ++H K+HL++
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN- 375
R + C V C + F+ ++ H+RIHTG+K + C C +F + L H HT
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 376 VVCSYCGNTYKNPKSLESHIR 396
C CG + + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 267 PDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS 324
P C+ H H+GEK + C C++ F R L H + H V+ QC
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCK 70
Query: 325 VCGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWGSLNQHNLVH 371
C + F+ ++K H R HTGEK + C +C F + L +H+ +H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 32/134 (23%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWGSLNQHNLVHTAVNVVCSYCGN 383
C K + ++++++H R HTGEK Y C+ C F + L +H HT V
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF------ 67
Query: 384 TYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC--DMCPSA 441
C C ++F LK H HT ++PF C C
Sbjct: 68 ----------------------QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 442 FKLKKHLQQHYKVH 455
F L +H+ +H
Sbjct: 106 FARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 354
C K + + +L H + H + +QC C + F+ +K H R HTG K + C+TC
Sbjct: 14 CNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 355 GASFVQWGSLNQHNLVHTA 373
F + L H HT
Sbjct: 73 QRKFSRSDHLKTHTRTHTG 91
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 376 VVCSY--CGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDR 431
+C+Y C Y L+ H R HT + CD C + F +LK H HT +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 432 PFVCDMCPSAFKLKKHLQQHYKVH 455
PF C C F HL+ H + H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTH 89
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV---NVVCS 379
C +CGK F D+ ++ H H+GEK Y C CG F + ++ H H +C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 380 YCGNTYKNPKSLESHIRYAHT 400
CG + P L HI+ H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 287 SGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
SG C IC K+F +L H K H + + C VCG F M H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 347 --KKYVCETCGASFVQWGSLNQH-NLVHTA 373
K Y+C++CG F + LN H VH+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 372 TAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH--TT 429
+ V C CG +++ L H + +H+ + C VCG FK K R+ H+ H +
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYK 453
+P++C C F HL H K
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIK 86
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C++CGK F+ L H H+ ++P+ C +C FK K + H + H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKV-RDHQCSVCGKAFADITNMKVHMR-IH 343
HSGEK + C +C F R + H+++ V + + C CGK F+ ++ H++ +H
Sbjct: 30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Query: 344 TGE 346
+G
Sbjct: 90 SGP 92
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 285 IHSGEKDHCCHI--CKKVFLRYRN---LVCHIKAVHEKVRDHQCSV--CGKAFADITNMK 337
IH K+ CH C + ++ LV H++ H + H+C+ C K+++ + N+K
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 338 VHMRIHTGEKKYVC--ETCGASFVQWGSLNQH-NLVHTAVN-VVCSYCGNT--YKNPKSL 391
H+R HTGEK Y+C E C +F +H N H+ VC G T Y +P SL
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 392 ESHIRYAH 399
H++ H
Sbjct: 147 RKHVKTVH 154
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 38/170 (22%)
Query: 297 CKKVFLRYRNLVCHIKA--VHEKVRDHQCSVCG-----KAFADITNMKVHMRIHTGEKKY 349
C + F LV HI + +H + ++ C G + F + VHMR HTGEK +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 350 VCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICD- 408
C G C +Y ++L++H+R +HT + +C+
Sbjct: 69 KCTFEG-------------------------CRKSYSRLENLKTHLR-SHTGEKPYMCEH 102
Query: 409 -VCGKEF-KMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKV 454
C K F R K H+ ++P+VC + C + L++H K
Sbjct: 103 EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 279 FTSHLDIHSGEKDHCC--HICKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADIT 334
+HL H+GEK + C C K F + H H + + C + C K + D +
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 335 NMKVHMRI 342
+++ H++
Sbjct: 145 SLRKHVKT 152
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKK 348
+K+ C C + F + NL+ H + H R + C +C KAF +++ H IH+ EK
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 349 YVCETCGASFVQWGSLNQHNLVHTAVN 375
+ C+ CG F Q +L H +H +
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTS 100
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 372 TAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDR 431
T +C +CG + +L H R HT + CD+C K F+ + L++H +H+ ++
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 432 PFVCDMCPSAFKLKKHLQQHYKVHLK 457
PF C C F + L H +H++
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 396 RYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
R +++ IC CG+ F L H HT +RP+ CD+C AF+ + HL+ H +H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 456 LKK 458
K+
Sbjct: 69 SKE 71
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYC 381
C CG+ F N+ +H R HT E+ Y C+ C +F + L H +H+ C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 382 GNTYKNPKSLESH 394
G + ++L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 282 HLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMR 341
H H+ E+ + C IC K F R +L H + +H K + +C CGK F + VH
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Query: 342 IH 343
+H
Sbjct: 95 LH 96
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 377 VCSY--CGNTYKNPKSLESHIRYAHTIRQKSICD--VCGKEFKMKKRLKEHMAVHTTDRP 432
C Y CG TY L++H+R HT + CD CG +F L H HT RP
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 433 FVCDMCPSAFKLKKHLQQHYKVHL 456
F C C AF HL H K H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRHF 90
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVV-CSY 380
+ CGK + +++K H+R HTGEK Y C + CG F + L +H HT C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 381 CGNTYKNPKSLESHIR 396
C + L H++
Sbjct: 72 CDRAFSRSDHLALHMK 87
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 281 SHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKV 338
+HL H+GEK + C C F R L H + H R QC C +AF+ ++ +
Sbjct: 26 AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLAL 84
Query: 339 HMRIH 343
HM+ H
Sbjct: 85 HMKRH 89
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETC 354
C K + + +L H++ H + + C CG FA + H R HTG + + C+ C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 355 GASFVQ 360
+F +
Sbjct: 73 DRAFSR 78
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 377 VCSY--CGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRP 432
C Y CG TY L++H+R HT + CD CG +F L H HT RP
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 433 FVCDMCPSAFKLKKHLQQHYKVHL 456
F C C AF HL H K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRHF 89
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVV-CSY 380
+ CGK + +++K H+R HTGEK Y C + CG F + L +H HT C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 381 CGNTYKNPKSLESHIR 396
C + L H++
Sbjct: 71 CDRAFSRSDHLALHMK 86
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 281 SHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKV 338
+HL H+GEK + C C F R L H + H R QC C +AF+ ++ +
Sbjct: 25 AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLAL 83
Query: 339 HMRIH 343
HM+ H
Sbjct: 84 HMKRH 88
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 354
C K + + +L H++ H + + C CG FA + H R HTG + + C+ C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 355 GASFVQWGSLNQHNLVH 371
+F + L H H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+ + C CGKAF+ + + H R+HTGEK Y C CG +F Q L H +HT+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHT 344
EK + C C K F R LV H + VH + ++C CGKAF+ + + H RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C CGK F L +H VHT ++P+ C C AF L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 28/85 (32%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKS 405
EK Y C CG +F + L QH VHT YK
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEK--------PYK------------------- 44
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTD 430
C CGK F L H +HT+
Sbjct: 45 -CLECGKAFSQNSGLINHQRIHTSG 68
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCH 310
Y C +C H +H+GEK + C C K F + L+ H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTA-VNVVCSYC 381
C VC +++ +T+++ H IH+ EKKY C C F +H + HT C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 382 GNTYKNPKSLESHIRYAHT 400
G ++ N + + SHI+ H+
Sbjct: 85 GKSFINYQFMSSHIKSVHS 103
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 258 VNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEK 317
V+ +V Y C C + H +IHS EK + C C+KVF H + H
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTG 75
Query: 318 VRDHQCSVCGKAFADITNMKVHMR 341
R +QC CGK+F + M H++
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIK 99
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 250 FRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVC 309
R+ IH +K Y C C + T H H+GE+ + C C K F+ Y+ +
Sbjct: 38 LRRHFNIHSWEK-KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS 96
Query: 310 HIKAVHEK 317
HIK+VH +
Sbjct: 97 HIKSVHSQ 104
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 342 IHTGEKKYVCETCGASFVQWGSLNQHNLVHT-AVNVVCSYCGNTYKNPKSLESHIRYAHT 400
I G Y+C C S+V SL +H +H+ C YC + + H HT
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHT 74
Query: 401 IRQKSICDVCGKEFKMKKRLKEHM-AVHTTD 430
++ C CGK F + + H+ +VH+ D
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 369 LVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
+V V +C C +Y SL H H+ +K C C K F + + +H HT
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 429 TDRPFVCDMCPSAFKLKKHLQQHYK 453
+R + C C +F + + H K
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIK 99
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+K + C C+ F NL H K VH + ++C++CG F N+K H RIH+GEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+ ++C C +F N+ H +HTGEK Y C CGA F + +L H +H+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CD C F+ K L H VHT ++P+ C++C + F +L+ H ++H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIR 396
+K Y C+ C ASF G+L H VHT C+ CG + P +L++H R
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVH 455
D+P+ CD C ++F+ K +L H VH
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVH 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSIC---DVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
CG + N + L H +Y H I QKS CGK F KK LKEHM +H+ R ++C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQH-IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETC 354
C ++F + L H K H + C CGK+F ++K HM++H+ + Y+CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 355 GAS 357
G S
Sbjct: 75 GPS 77
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 407 CDV--CGKEFKMKKRLKEHMAV-HTTDRPFVCD--MCPSAFKLKKHLQQHYKVH 455
CD CG+ F ++ L H H + F C C +F KKHL++H K+H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
CG ++ + + H+ +R C VCGK+FKMK L HM +HT +P+ C++C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYG-CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 441 AFKLKKHLQQH 451
F + +H
Sbjct: 74 RFMWRDSFHRH 84
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CGK F K + HM++H RP+ C +C FK+K HL H K+H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 287 SGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
SG+K + C C K F H+ ++H +R + C VCGK F ++ HM+IHTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 347 KKYVCETCGASFVQWGSLNQH 367
K Y C C F+ S ++H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 282 HLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAF 330
H+ +H G + + C +C K F +LV H+K +H ++ ++C++C K F
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRF 75
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNT 384
CGK+F + HM +H G + Y C CG F L H +HT + C+ C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 385 YKNPKSLESHI 395
+ S H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRYAHTIR 402
+G+K Y C+ CG SF ++H +H + C CG +K L H++ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGI 63
Query: 403 QKSICDVCGKEFKMKKRLKEHMA 425
+ C++C K F + H+
Sbjct: 64 KPYECNICAKRFMWRDSFHRHVT 86
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 286 HSGEKDHCCHIC--------KKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITN 335
H G + H+C K F LV HI+ VH + C CGK FA N
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSEN 107
Query: 336 MKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTA 373
+K+H R HTGEK + C E C F +H VHT+
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 265 KCPDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQ 322
+CP + +H+ +H+GEK C C K+F R NL H K H + +
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFK 122
Query: 323 CSV--CGKAFADITNMKVHMRIHTGEK 347
C C + FA+ ++ K HM +HT +K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 52/146 (35%), Gaps = 38/146 (26%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCSVC--------GKAFADITNMKVHMRIHTGEKK 348
C + F LV H+ H + VC GK+F + H+R+HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 349 YVCE--TCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIRYAHTIRQKS 405
+ C CG F + +L H HT C + G
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG----------------------- 127
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDR 431
C + F K+HM VHT+D+
Sbjct: 128 ----CDRRFANSSDRKKHMHVHTSDK 149
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 381 CGNTYKNPKSLESHIRYAHTIRQKSICDVC--------GKEFKMKKRLKEHMAVHTTDRP 432
C T+ L +H+ H + VC GK FK K +L H+ VHT ++P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 433 FVCDM--CPSAFKLKKHLQQHYKVH 455
F C C F ++L+ H + H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTH 115
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVC 435
C G ++K L +HIR HT + C CGK F + LK H HT ++PF C
Sbjct: 65 CPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 436 DM--CPSAFKLKKHLQQHYKVH 455
+ C F ++H VH
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH 367
+CS CGK F + +H+R HTGEK Y CE C + Q SL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK 457
C CGK F+ L H+ HT ++P+ C+ C A K L+ H + H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH 427
CSYCG +++ L H+R HT + C+ C K L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 316 EKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVH 371
EK R H C C K + +++K H+R HTGEK Y C E C F + L +H H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 372 TAVNVV-CSYCGNTYKNPKSLESHIR 396
T C C ++ L H++
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 267 PDCSAILLSYGGFTSHLDIHSGEKDHCC--HICKKVFLRYRNLVCHIKAVHEKVRDHQCS 324
P C+ + +HL H+GEK + C C F R L H + H + QC
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCG 79
Query: 325 VCGKAFADITNMKVHMRIH 343
VC ++F+ ++ +HM+ H
Sbjct: 80 VCNRSFSRSDHLALHMKRH 98
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 378 CSYCGNT--YKNPKSLESHIRYAHTIRQKSIC--DVCGKEFKMKKRLKEHMAVHTTDRPF 433
C Y G T Y L++H+R HT + C + C F L H HT +PF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 434 VCDMCPSAFKLKKHLQQHYKVH 455
C +C +F HL H K H
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRH 98
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETC 354
C KV+ + +L H++ H + ++C+ C FA + H R HTG K + C C
Sbjct: 23 CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 355 GASFVQ 360
SF +
Sbjct: 82 NRSFSR 87
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV 377
QC +C + F+ ++ H+R HTGEK + C+ CG F + +H + + ++
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C +C + F L H+ HT ++PF CD+C F ++H +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
C IC + F R +L HI+ H + C +CG+ FA K H I
Sbjct: 6 CRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH 427
C C + L +HIR HT + CD+CG++F K H +
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLR 303
++C C T+H+ H+GEK C IC + F R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 57 YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQD 113
Y C+ C++ F K +L++H K H N P + FVC CG + F R + + RH +
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--FVCSKCG-KTFTRRNTMARHADN 69
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQH-------NLVHTAVNVVCSYCGNTYKNPKSLES 393
R HTGEK Y C C +F Q L+ H N V A VCS CG T+ ++
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--FVCSKCGKTFTRRNTMAR 65
Query: 394 HI 395
H
Sbjct: 66 HA 67
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEK---VRDHQCSVCGKAFADI 333
G S H+GEK + C C K F + + L H K H+ CS CGK F
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 334 TNMKVHMRIHTGEKKYVCETCGAS 357
M H G E G S
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPS 84
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVH 371
C+ CGK + D + + H R H G + C CG F +N+H VH
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 376 VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTT 429
C++CG TY++ L H R AH + C CGK F+ + + H+ VH
Sbjct: 5 FFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
E+ C+ C K + L H +A H R C CGK F D + + H+++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
R + C+VCGKAF D +N+ H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRP 432
IC VCGK F + L +H +HT ++P
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVH 455
+RP++C +C AF + +L +H K+H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
E+ Y+C CG +F +L +H +HT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTG 37
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQH 451
+C+VC + F ++ LK H HT ++P+ C +C AF + L +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH 367
C VC +AFA ++K H R HT EK Y C C +F + L +H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 433 FVCDMCPSAFKLKKHLQQHYKVH 455
FVC++C AF ++HL++HY+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 311 IKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHN 368
+ V K+R + C V C + F+ + H+RIHTG+K + C C +F + L H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 369 LVHT 372
HT
Sbjct: 70 RTHT 73
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 408 DVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ C + F L H+ +HT +PF C +C F HL H + H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 258 VNKKVNYKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKA 313
V K Y CP C T H+ IH+G+K C IC + F R +L HI+
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHT 344
C + F R L HI+ +H + QC +C + F+ ++ H+R HT
Sbjct: 27 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 317 KVRDHQCS--VCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVH 371
++R H CS CGK + +++K H R HTGEK + C + C F + L++H H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVH 455
CGK + LK H HT ++PF C C F L +H + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYK 453
K IC+ CG K LK+H+ HT RP+ C C +FK K +L +H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 348 KYVCETCGASFVQWGSLNQHNLVHTAVNVV-CSYCGNTYKNPKSLESHIR 396
KY+CE CG + L +H HT V C+YC ++K +L H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH 367
C CG + +K H+R HT + Y C C SF G+L +H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHM 424
+C CG K P L+ HIR HT + C C FK K L +HM
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++CSVCGKAF+ ++ VH RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ +QC+ CGKAF+ + + H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C+ CGK F +L H VHT ++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++CS+CGK+F + + VH +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C +CGK F K +L H +HT ++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
V+ + CS CGKAF + + +HMR HTGEK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C CGK F+ K L HM HT ++P
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAV-NVVCSY-- 380
CG A+ ++ H+ HTGEK + C E C F L +H+L HT N C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 381 CGNTYKNPKSLESHIRYAHTIR 402
C + +++ H H I+
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 377 VCSY--CGNTYKNPKSLESHIRYAHTIRQKSIC--DVCGKEFKMKKRLKEHMAVHTTDRP 432
+CS+ CG Y L++H+ HT + C + C K F L H HT ++
Sbjct: 5 ICSFADCGAAYNKNWKLQAHLS-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 433 FVC--DMCPSAFKLKKHLQQHY 452
F C D C F K ++++H+
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHF 85
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVC--DMCPSAFKLKKHLQQHYKVH 455
CG + +L+ H++ HT ++PF C + C F HL +H H
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C CGKAFA N+ H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK Y C CG +F Q +L QH +HT
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C CGK F K L +H +HT ++P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGKAF D +N+ H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
R ++CS CGKAFA + + +H RIHTGEK
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV---CSYCGNTYKNPKSLESHIRY 397
R H+GEK Y C C A F Q G++ H L NV C +C L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 398 AHTIRQKS 405
H+ S
Sbjct: 68 QHSYSGPS 75
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH-EKVRDHQCSVCGKAFADITN 335
G S HSGEK + C+IC F + + HI H E V C C A ++
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 336 MKVHMR 341
+ VH+R
Sbjct: 61 LGVHLR 66
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C CGKAF+ T++ H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK Y C+ CG +F Q L QH VHT
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTG 37
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK Y+C CG SF+Q LN+H +HT
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
C+ CGK+F +++ H RIHTGEK
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRP 432
IC+ CGK F K L H +HT ++P
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVH 455
++P++C+ C +F K HL +H ++H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.036, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
R H+CS CGK F +N H RIHTGEK
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEK 347
++C VCGK F+ ++++ H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
CDVCGKEF L+ H VHT ++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
R ++CS CGKAF + + +H RIH GEK
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK Y CETCGA FVQ L H L+HT
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAV----NVVCS 379
CGKAF +KVH HT + Y C E C F L +H VH + CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 380 YCGNTY 385
+ G T+
Sbjct: 69 FVGKTW 74
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVC--DMCPSAFKLKKHLQQHYKVH 455
CGK FK +LK H HT P+ C + C F L L++H KVH
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+GEK Y C+ CG SF Q GSL H +HT
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 32.3 bits (72), Expect = 0.62, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTG 345
+ +QC CGK+F+ ++ VH R+HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
R H+C+ CGK+F ++ H RIHTGEK
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
E+ + C CG SF+Q L QH +HT
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTG 37
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAV----NVVCS 379
CGKAF +KVH HT + Y C E C F L +H VH + CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 380 YCGNTY 385
+ G T+
Sbjct: 69 FVGKTW 74
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVC--DMCPSAFKLKKHLQQHYKVH 455
CGK FK +LK H HT P+ C + C F L L++H KVH
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 35.0 bits (79), Expect = 0.077, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHT----AVNVVCSYCGNTYKNPKSLESHIRYAH 399
+G CE CG + Q SLN H H A+ C +CG ++ P S+ +H +H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.078, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGE 346
H+C+ CGKAF+ + + +H RIHTGE
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.078, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
T EK + C+TC SF Q +LN H ++HT
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTG 37
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
CD C K F+ + L H +HT ++P
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 428 TTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
T ++PF CD C +F+ + L H +H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIH 35
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ HQC CG+ F +++ H RIHTGEK
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C CG+ F +K L +H +HT ++P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 317 KVRDHQCSVCGKAFADITNMKVHMRIHTGEKK 348
K + ++C CGKAF +N+ H IHTGEK+
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
T EK Y C CG +F +L H ++HT
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTG 37
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ ++CS CGK+F + + VH RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG 382
EK Y C CG SF++ L+ H +HT N G
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSSG 46
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ H+C CGK+F+ + + VH RIHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
QC +CGKAF +++ H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
V+ + C+ CGKAF+ +++ H IHTGEK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 347 KKYVCETCGASFVQWGSLNQHNLVHTA 373
K Y+C CG +F + SL H ++HT
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRP 432
+C+ CGK F + L H +HT ++P
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGKAF+ + + H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ + CS CGKAF+ + + +HMR H+GEK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+G++ Y C+ CG SF Q GSL H +HT
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTG 345
R ++C CGK+F ++ +H RIHTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTD 430
+CD+CGK+FK K LK H +HT D
Sbjct: 11 LCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 347 KKYVCETCGASFVQWGSLNQHNLVHTA 373
K ++C+ CG F G+L H L+HTA
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
CS CGK F TN+ +H +IHTGE+
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGER 39
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRP 432
IC CGK F K L H +HT +RP
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C+ CGKAF + + +H +IHTGEK
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+GEK YVC+ CG +F Q L+ H VHT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ + C CGKAF + + +H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
++P+ C++C AF L HL QH +VH ++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHT 372
EK Y C CG +FV LNQH VHT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ + C+VCGKAF ++ H+R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTD 430
C+VCGK F + L +H+ VHT +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ + C CGKAF + ++ H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG 382
EK Y CE CG +F+ L +H +HT G
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C+ CGK F +L+EH +HT ++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 349 YVCETCGASFVQWGSLNQH-NLVHTAVNVVCSYCGNTYKNPKSLESHIRYAH 399
++C CG SF G+ +H L+H A C YC T+ + L HI H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH-NLVHTAVN 375
H C VCG++FA + H+R+ + + C+ C A+F L +H N H + N
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQH 451
+C VCG+ F K + H+ + + F C CP+ F L +H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 180 KCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPS 217
+CH C C ESF + H+ + H F C CP+
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPA 64
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ H C CGK F I+ +++H R+H GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+CS C KAF +N+ VH R HTGEK
Sbjct: 14 ECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK + C+ CG SF LN+H++VHTA
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
CD+CGK F + RL H VHT ++P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTG 345
+R + CSVCGK F+ M+ H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 431 RPFVCDMCPSAFKLKKHLQQHYKVH 455
RP+ C +C F LK ++ HY+VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHT 428
C VCGK F +K +++ H VHT
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHT 27
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGKAF +N+ H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C+ CGK F+ L H +HT ++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ + C+ CGK F+ + + VH RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C+ CGK+F N+ H RIHTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
+K Y C+ C +F+Q G LNQH VHT
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C C K F I ++ H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C CGKAF ++ H+RIHTGEK
Sbjct: 14 KCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C VC K+F +++ VH RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
C CGKAF+D + H RIHTGEK
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C+ CGK+F+ + + H RIHTGEK
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F +++ H RIHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
QC CGK F +++ H R+HTGEK
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG 382
EK + CE CG F Q L+ H VHT G
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSSG 46
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 431 RPFVCDMCPSAFKLKKHLQQHYKVH 455
RPFVC +C SAF K + +H KVH
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.43, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ ++CS CGKAF + + VH R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ ++C+ CGKAF + + +H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTG 345
+ ++C CGKAF+ ++ VH+R+HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK Y C+ CG +F Q GSL H VHT
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
CD CGK F K L H+ VHT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C VCGK F++ L +H +VH+ +RP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVH 455
++P+ C +C AF++ HL QH+ VH
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C VCGKAF +++ H +H+GE+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ ++C+ C KAF +N+ VH R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C CGK F N+K H+RIH+GEK
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ + C+ CGKAF + + +H RIHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 431 RPFVCDMCPSAFKLKKHLQQHYKVH 455
+P+VC+ C AF LK L H ++H
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIH 33
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+G+K YVC CG +F L H +HT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C CGKAF D ++ H R+HTG++
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C+ C K F +++ VH RIHTGEK
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTG 345
+ ++CS CGKAF T++ H RIHTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG 382
EK Y C CG +F + LN+H +HT G
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG 46
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++CS CGKAF + + +H + HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGKAF+ +++ H IHTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C+ CGK F ++ L H A+HT +P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F+ + + H +IHTGEK
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK+Y C CG F + L+QH +HT
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C+ CGK F +L +H +HT ++P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTAVN 375
+GEK YVC CG +F L H +HT V+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTG 345
+ + CS CGKAF + + VH IHTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
R ++C CGKAF +++ H R HTGEK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 290 KDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSV 325
K + C C K F R +L HIK VH R H+C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 401 IRQKSICDVCGKEFKMKKRLKEHM-AVHTTDRPFVCDM 437
+ + IC CGK F L H+ VHT++RP C +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ + C CGKAF + H RIHTGEK
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRP 432
+CD CGK F + L H +HT ++P
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVH 455
++P+VCD C AF L L +H ++H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK YVC+ CG +F L +H +HT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTG 37
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++CS CGK+F + +++H + HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F + + H RIHTGEK
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 432 PFVCDMCPSAFKLKKHLQQHYKVH 455
FVC++C AF ++HL++HY+ H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
C VC +AFA ++K H R HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C VC KAF ++ H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVH 455
++P+ C +C AF K HL QH K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGE 346
H+CS C K F+ + + +H RIHTGE
Sbjct: 11 HECSECRKTFSFHSQLVIHQRIHTGE 36
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C CGK F + + H R+HTGEK
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG 382
EK + CE CG F Q L+ H VHT G
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C+ CGK F +L H VHT ++P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C VC KAF+ ++ H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C CGK + N+ +H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
QC C + F+ ++K H R HTGEK
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+GEK YVC CG +F++ H +HT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ + C+ CGKAF ++ H RIHTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKK 348
H+C C + F D TN+K H R +K+
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDHKKR 78
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C CGK F+ + + VH ++HTGEK
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 288 GEKDHCCHICKKVFLRYRNLVCHIKAVHEK-VRDHQCSVCGKAFADITNMKVHMRI 342
GE + C +C +V+ N H H++ V+ + C C K F NM H++I
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 429 TDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD 459
T + + C C + F L+KHL QH K H K
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTHAAKS 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGE 346
++ + C+ CGKAF + + +H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKY 349
C +CGK F D+ ++ H H+GEK Y
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C CGK + N+ +H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C CGK + ++ H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
++ + C C + FAD ++ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTG 345
+ + C +CG F + +K H+RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ + C+ CGK F+ + + H R HTGEK
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 430 DRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
++P++C C AF ++ +L +H K+H K+
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQ 38
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRP 432
IC CGK F ++ L +H +HT +P
Sbjct: 14 ICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ + C+ CGKAF +N+ H +IHT +K
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F +++ H RIHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG 382
EK Y C CG F Q L H +HT V G
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+C CGK++ ++ H R+HTGEK
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRI-HTGEK 347
+ +QC C K FAD +N+K H++ H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 417 KKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYK 453
K L+ H +H TDRPF C+ C K +L +H K
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C C A A N+ VH+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 317 KVRDHQCSV--CGKAFADITNMKVHMRIHTGEK 347
K + H C + CGK + ++++ H+R HTGE+
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 432 PFVCDMCPSAFKLKKHLQQHYKVH 455
FVC++C AF +++L++HY+ H
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSH 25
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
C VC +AFA +K H R HT EK
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCSVC--------GKAFADITNMKVHMRIHTGEK 347
C + F LV H+ H + VC GK+F + H+R+HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTAV 374
+GEK Y C CG +F L H VHT V
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGV 36
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ + C+ CGKAF + + VH +HTG K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 28.9 bits (63), Expect = 7.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRP 432
C+ CGK F K +L H VHT +P
Sbjct: 13 CNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F +++ H R+HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
++H+C C K F + N+K H++IH +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGKAF +++ +H H+GEK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
EK Y CE CG F+ L H++VHT
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTG 37
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
V ++CS C K+F+ + VH R+HT EK
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGE 346
++CS CGKAF + H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEF 414
VC C + + SL+ HIRY + +C VC KEF
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHTK---VCPVCKKEF 110
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
++ +QC CG++F+D T+ H+ H +K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
V+ + CS C K F+ + + VH R HTG K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
C VC +AFA +K H R HT EK
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 433 FVCDMCPSAFKLKKHLQQHYKVH 455
FVC++C AF ++ L++HY+ H
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSH 25
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
C+ CGK F + + H RIH+GEK
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEK 347
++C CGKAF+ + H R H GEK
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.135 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,768,851
Number of Sequences: 62578
Number of extensions: 552148
Number of successful extensions: 2998
Number of sequences better than 100.0: 186
Number of HSP's better than 100.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1799
Number of HSP's gapped (non-prelim): 1054
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)