RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11588
(459 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 102 bits (256), Expect = 1e-25
Identities = 59/193 (30%), Positives = 79/193 (40%), Gaps = 31/193 (16%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
Y CP+C H H+GEK + C C K F ++L H + H + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKC 80
Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCG- 382
CGK+F+ N++ H R HTGEK Y C CG SF Q L H HT G
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT---------GE 131
Query: 383 NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
YK C CGK F + L H HT ++P+ C C +F
Sbjct: 132 KPYK--------------------CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Query: 443 KLKKHLQQHYKVH 455
+ L H + H
Sbjct: 172 SRRDALNVHQRTH 184
Score = 98.7 bits (247), Expect = 2e-24
Identities = 52/177 (29%), Positives = 73/177 (41%), Gaps = 29/177 (16%)
Query: 279 FTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKV 338
+ + GEK + C C K F R +L H + H + ++C CGK+F+D ++
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYA 398
H R HTGEK Y C CG SF Q +L H HT Y
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK--------PYA------------ 107
Query: 399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C CGK F L+ H HT ++P+ C C +F + +L H + H
Sbjct: 108 --------CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 79.8 bits (198), Expect = 1e-17
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 329 AFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKN 387
+ ++ + GEK Y C CG SF + L +H HT C CG ++ +
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 388 PKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKH 447
K L H R HT + C CGK F + L+ H HT ++P+ C C +F H
Sbjct: 62 KKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 448 LQQHYKVH 455
L+ H + H
Sbjct: 121 LRAHQRTH 128
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 88.0 bits (219), Expect = 1e-20
Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 15/185 (8%)
Query: 282 HLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADITNMK 337
+ K + C C + + L H H + C C K F + ++
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 338 VHMRIHTGEKKYVCE--TCGASFVQWGSLNQHNLVHT---AVNVVCSY--CGNTYKNPKS 390
H HTGEK + C+ C F ++ +H VC + CG +K
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 391 LESHIRYAHTIRQKSIC--DVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHL 448
L+ H +HT + C + C K F + RLK H VH D C K
Sbjct: 122 LKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Query: 449 QQHYK 453
+H
Sbjct: 181 LKHVA 185
Score = 58.0 bits (141), Expect = 4e-10
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 280 TSHLDIHSGEKDHC--CHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADI 333
H + K CH C K F ++ L H + H + ++C C K F+
Sbjct: 91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLP 149
Query: 334 TNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNL-VHT 372
+ +K H ++H G ++C W +H H
Sbjct: 150 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 84.1 bits (209), Expect = 7e-20
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCH--IKAVH--EKVR 319
+CP C LS H H+GEK C C K + R NL+ H ++ E+V
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV- 66
Query: 320 DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNL-VHT 372
CSVC + F +++HM HTGE Y C +C F+Q L H + +H+
Sbjct: 67 -FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 81.8 bits (203), Expect = 5e-19
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 31/133 (23%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH---NLVHTAVNVVC 378
+C C K F +KVH R HTGEK + C CG + + +L +H N ++ + V
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-- 66
Query: 379 SYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC 438
+ C VC + F+ + L+ HM HT + P+ C C
Sbjct: 67 ------FT--------------------CSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Query: 439 PSAFKLKKHLQQH 451
F KK LQ H
Sbjct: 101 SQQFMQKKDLQSH 113
Score = 53.3 bits (129), Expect = 5e-09
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 264 YKCPDCSAILLSYGGFTSH---LDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRD 320
++CP C H ++ E+ C +C++ F R L H+ H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMP 94
Query: 321 HQCSVCGKAFADITNMKVHM-RIHTGEK 347
++CS C + F +++ HM ++H+G
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 80.2 bits (199), Expect = 1e-18
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
+ +K+ C C + F + NL+ H + H R + C +C KAF +++ H
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 340 MRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
IH+ EK + C+ CG F Q +L H +H
Sbjct: 65 RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 68.6 bits (169), Expect = 1e-14
Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 30/116 (25%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSY 380
C CG+ F N+ +H R HT E+ Y C+ C +F + L H +H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS-------- 69
Query: 381 CGNT-YKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
+K C CGK F + L H +H
Sbjct: 70 -KEKPFK--------------------CQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 67.8 bits (167), Expect = 3e-14
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 30/119 (25%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIR 396
+K+++C+ CG F + +L H HT Y
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHT---------DERPYT---------- 47
Query: 397 YAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CD+C K F+ + L++H +H+ ++PF C C F + L H +H
Sbjct: 48 ----------CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 66.7 bits (164), Expect = 7e-14
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
+ C C H H+ E+ + C IC K F R +L H + +H K + +C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVCET 353
CGK F + VH +H +
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 81.2 bits (201), Expect = 2e-18
Identities = 38/168 (22%), Positives = 54/168 (32%), Gaps = 38/168 (22%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH--------EKVRDHQCSVCGKAFA 331
S I + C + F LV H+ H +C GK+F
Sbjct: 14 LSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 332 DITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNP 388
+ H+R+HTGEK + C CG F + +L H HT C + G
Sbjct: 74 AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG------ 127
Query: 389 KSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
C + F K+HM VHT+D+
Sbjct: 128 ---------------------CDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 76.6 bits (189), Expect = 8e-17
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 15/144 (10%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT----------AVN 375
G + I I + ++C +F L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 376 VVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPF 433
C G ++K L +HIR HT + C CGK F + LK H HT ++PF
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 434 VCDM--CPSAFKLKKHLQQHYKVH 455
C+ C F ++H VH
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVH 145
Score = 58.8 bits (143), Expect = 1e-10
Identities = 37/173 (21%), Positives = 59/173 (34%), Gaps = 28/173 (16%)
Query: 186 KCEESFDNCNNLWSHMFIKHENSDFVCNLCP---SHSKVLVRYVHSAVRHMKKHHKLQLS 242
S S +I C S LV H+ H +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVT-------HVTMEH---VG 51
Query: 243 IPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKV 300
P+ +N+ +CP + +H+ +H+GEK C C K+
Sbjct: 52 GPEQNNHVCYW----------EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI 101
Query: 301 FLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC 351
F R NL H + H + +C C + FA+ ++ K HM +HT +K
Sbjct: 102 FARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 27.3 bits (61), Expect = 7.7
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 57 YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSH---WFVCKMCGHRLFMRLSDLRRHM 111
C++ F L H+ +EH +H W C G + F L H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG-KSFKAKYKLVNHI 82
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 77.8 bits (193), Expect = 6e-18
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
H C +C K F R L H++ H V+ ++C C A AD +++ H+RIH+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHT 372
E+ + C+ C + L H HT
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 73.2 bits (181), Expect = 2e-16
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 30/116 (25%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSY 380
H+C VCGK F+ +K HMR HTG K Y C+TC + SLN+H +H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-------- 60
Query: 381 CG-NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
+K C +C + +L H+ HT D
Sbjct: 61 -DERPFK--------------------CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 67.4 bits (166), Expect = 2e-14
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
+KC C +H+ H+G K + C C +L H +H R +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67
Query: 324 SVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C A + + + VH+R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 62.8 bits (154), Expect = 1e-12
Identities = 27/113 (23%), Positives = 37/113 (32%), Gaps = 28/113 (24%)
Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIR 402
+ CE CG F + L H HT V YK
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV--------KPYK---------------- 38
Query: 403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C C L +H+ +H+ +RPF C +CP A + L H + H
Sbjct: 39 ----CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 77.9 bits (193), Expect = 1e-17
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 32/134 (23%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVHTAVNVVCSYCGN 383
C K + ++++++H R HTGEK Y C+ C F + L +H HT V
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK-------- 65
Query: 384 TYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSA 441
++ C C ++F LK H HT ++PF C C
Sbjct: 66 PFQ--------------------CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 442 FKLKKHLQQHYKVH 455
F L +H+ +H
Sbjct: 106 FARSDELVRHHNMH 119
Score = 74.1 bits (183), Expect = 2e-16
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 264 YKC--PDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVR 319
+ C P C+ H H+GEK + C C++ F R L H + H V+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65
Query: 320 DHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVH 371
QC C + F+ ++K H R HTGEK + C C F + L +H+ +H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 66.8 bits (164), Expect = 8e-14
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 287 SGEKDHCC--HICKKVFLRYRNLVCHIKAVH--EKVRDHQCSV--CGKAFADITNMKVHM 340
S ++ C C K + + +L H + H EK +QC C + F+ +K H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEK--PYQCDFKDCERRFSRSDQLKRHQ 58
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
R HTG K + C+TC F + L H HT
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 49.8 bits (120), Expect = 8e-08
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 34/117 (29%)
Query: 344 TGEKKYVCE--TCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHT 400
+ ++ ++C C + + L H+ HT G Y+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT---------GEKPYQ-------------- 38
Query: 401 IRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CD C + F +LK H HT +PF C C F HL+ H + H
Sbjct: 39 ------CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 75.2 bits (186), Expect = 8e-17
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH--EKVR 319
CP C+ + HL H G + H C C K F+ L H VH EK
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEK-- 61
Query: 320 DHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFVQWGSLNQHNLVHT 372
QC+ CGK F+ N++ H+RIHTG++ YVC C F Q +L H L H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 74.9 bits (185), Expect = 1e-16
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 326 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTY 385
C K F D + M+ H+ H G + +VC CG +FV+ L +H LVHT
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG------------ 59
Query: 386 KNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFK 443
+ P + T CGK F + L+ H+ +HT DRP+VC C F
Sbjct: 60 EKP--------FQCTFEG------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 105
Query: 444 LKKHLQQHYKVH 455
+L+ H H
Sbjct: 106 QSTNLKSHILTH 117
Score = 67.9 bits (167), Expect = 4e-14
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 32/149 (21%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ C C K+F + H+ +V H C+ CGKAF + + +K H +HTGE
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 347 KKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQK 404
K + C E CG F +L H +HT P Y
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG------------DRP--------Y------V 94
Query: 405 SICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
D C K+F LK H+ H +
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 57.5 bits (140), Expect = 2e-10
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDH 321
+ C +C + H +H+GEK C C K F NL H++ +H R +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 322 QCSV--CGKAFADITNMKVHMRIHTGEKKY 349
C C K FA TN+K H+ H K
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 45.2 bits (108), Expect = 3e-06
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 33/114 (28%)
Query: 346 EKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQ 403
+ C + C F ++ +H H P+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHG---------------PRVHV----------- 36
Query: 404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVH 455
C CGK F +LK H VHT ++PF C C F L +L+ H ++H
Sbjct: 37 ---CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 74.1 bits (183), Expect = 1e-16
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNV---V 377
C +CGK F D+ ++ H H+GEK Y C CG F + ++ H H +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 378 CSYCGNTYKNPKSLESHIRYAHT 400
C CG + P L HI+ H+
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHS 90
Score = 73.3 bits (181), Expect = 2e-16
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
SG C IC K+F +L H K H + + C VCG F M H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 346 E--KKYVCETCGASFVQWGSLNQHN-LVHT 372
K Y+C++CG F + LN H VH+
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 61.4 bits (150), Expect = 3e-12
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 32/114 (28%)
Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHTI 401
+G CE CG F LN+H L H+ G Y
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHS---------GEKPYS--------------- 37
Query: 402 RQKSICDVCGKEFKMKKRLKEHMAVHT--TDRPFVCDMCPSAFKLKKHLQQHYK 453
C VCG FK K R+ H+ H +P++C C F HL H K
Sbjct: 38 -----CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 45.2 bits (108), Expect = 2e-06
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C++CGK F+ L H H+ ++P+ C +C FK K + H + H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 28.6 bits (65), Expect = 1.1
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ C++C F+ HL +H H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH 30
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 75.7 bits (187), Expect = 2e-16
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 264 YKCPDCSAILLSYGGFTSHLD---IHSGEKDHCCHIC-----KKVFLRYRNLVCHIKAVH 315
+ CS S H++ IH K+ CH + F LV H++ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62
Query: 316 EKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFVQWGSLNQH-NLV 370
+ H+C+ C K+++ + N+K H+R HTGEK Y+CE C +F +H N
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 371 HTAVN-VVCSY--CGNTYKNPKSLESHIRYAHT 400
H+ VC C Y +P SL H++
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVK-TVH 154
Score = 74.9 bits (185), Expect = 3e-16
Identities = 43/180 (23%), Positives = 66/180 (36%), Gaps = 40/180 (22%)
Query: 289 EKDHCCHICKKVFLRYRNLVCHIKA--VHEKVRDHQCSVCG-----KAFADITNMKVHMR 341
E D C + F LV HI + +H + ++ C G + F + VHMR
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 342 IHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYA 398
HTGEK + C E C S+ + +L H HT +C + G
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEG---------------- 104
Query: 399 HTIRQKSICDVCGKEFKMKKRLKEHMA-VHTTDRPFVCDM--CPSAFKLKKHLQQHYKVH 455
C K F +H H+ ++P+VC + C + L++H K
Sbjct: 105 -----------CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 48.4 bits (116), Expect = 4e-07
Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 34/177 (19%)
Query: 180 KCHSCQKCEESFDNCNNLWSHMFIKH---ENSDFVCNLC--PSHSKVLVRYVHSAVRHMK 234
C + FD+ L H+ +H E +FVC+ + A +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPF-----KAQYMLV 56
Query: 235 KHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCP--DCSAILLSYGGFTSHLDIHSGEKDH 292
H + H +K +KC C +HL H+GEK +
Sbjct: 57 VHMR-----------------RHTGEK-PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Query: 293 CCH--ICKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTG 345
C C K F + H H + + C + C K + D ++++ H++ G
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 74.0 bits (183), Expect = 2e-16
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHT 344
SG+K + C C K F H+ +H +R + C VCGK F ++ HM+IHT
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 345 GEKKYVCETCGASFVQWGSLNQHNLVHT 372
G K Y C C F+ S ++H V +
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRH--VTS 87
Score = 67.1 bits (165), Expect = 4e-14
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
H+ +H G + + C +C K F +LV H+K +H ++ ++C++C K F + H
Sbjct: 26 DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF--H 82
Query: 340 MRIHTGEKKYVCETCGASFVQWGSLN 365
+ + K Y + + +
Sbjct: 83 RHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 61.7 bits (151), Expect = 4e-12
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 340 MRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYA 398
+G+K Y C+ CG SF ++H +H + C CG +K L H++
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-I 59
Query: 399 HTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHL 448
HT + C++C K F + H V + + +
Sbjct: 60 HTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 44.7 bits (107), Expect = 4e-06
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CGK F K + HM++H RP+ C +C FK+K HL H K+H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 71.4 bits (176), Expect = 9e-16
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH----EKVRDHQCSVCGKAFAD 332
G S H+GEK + C C K F + + L H K + CS CGK F
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTR 59
Query: 333 ITNMKVHMRIHTGEKKYVCETCGASF 358
M H G E G S
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGPSS 85
Score = 63.7 bits (156), Expect = 5e-13
Identities = 20/108 (18%), Positives = 29/108 (26%), Gaps = 24/108 (22%)
Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESH 394
+ R HTGEK Y C C +F Q L+ H + P +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD----------PNFVPAAFV-- 49
Query: 395 IRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
C CGK F + + H + +
Sbjct: 50 ------------CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHT----TDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C C K F+ K+ L H + FVC C F + + +H
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 34.4 bits (80), Expect = 0.009
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 420 LKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
HT ++P+ C C F+ K+ L H+K +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 29.4 bits (67), Expect = 0.53
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 57 YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHM 111
Y C+ C++ F K +L++H K H N P + FVC CG + F R + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--FVCSKCG-KTFTRRNTMARHA 67
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 71.0 bits (175), Expect = 1e-15
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVV 377
++ QC +C + F+ ++ H+R HTGEK + C+ CG F + +H + + ++
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 378 CSYCGNTYKNPKSLESHIRYAHT 400
LE+ +
Sbjct: 61 EDKVEELLSKNYHLENEVARLKK 83
Score = 56.0 bits (136), Expect = 2e-10
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
++C C T+H+ H+GEK C IC + F R H H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL--PILE 61
Query: 324 SVCGKAF---ADITNMKVHMRIHTGEK 347
+ + N ++ GE+
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGER 88
Score = 44.4 bits (106), Expect = 3e-06
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
C +C + F L H+ HT ++PF CD+C F ++H +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 44.0 bits (105), Expect = 3e-06
Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 31/106 (29%)
Query: 347 KKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHTIRQKS 405
K + C C +F + L H HT G +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT---------GEKPFA------------------- 33
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQH 451
CD+CG++F K H + P + D HL+
Sbjct: 34 -CDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENE 77
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 69.4 bits (171), Expect = 4e-15
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
C IC K F R L H +H R + C CGK F ++MK H IHTGEK + C+
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 354 CGASFVQWGSLNQHNLVHT 372
CG +F Q +L H+ HT
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 62.8 bits (154), Expect = 7e-13
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 30/108 (27%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYC 381
C +CGK+F + + H+ IH+ + Y C+ CG F Q + +H +HT
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT--------- 53
Query: 382 G-NTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
G +K C VCGK F L H HT
Sbjct: 54 GEKPHK--------------------CQVCGKAFSQSSNLITHSRKHT 81
Score = 55.9 bits (136), Expect = 2e-10
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQC 323
+ C C ++HL IHS + + C C K F + ++ H +H + H+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 324 SVCGKAFADITNMKVHMRIHTG 345
VCGKAF+ +N+ H R HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 47.4 bits (114), Expect = 2e-07
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 30/108 (27%)
Query: 349 YVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRYAHTIRQKSIC 407
+ C+ CG SF + +L+ H L+H+ Y C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHS---------DTRPYP--------------------C 32
Query: 408 DVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CGK F K +K+H +HT ++P C +C AF +L H + H
Sbjct: 33 QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 69.4 bits (171), Expect = 4e-15
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 289 EKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGE 346
E+ + C + C + F + +L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 347 KKYVCETCGASFVQWGSLNQHNLVHT 372
K + C+ CG F + +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 60.6 bits (148), Expect = 7e-12
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 264 YKCP--DCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDH 321
Y CP C G T H+ IH+G+K C IC + F R +L HI+ H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.2 bits (121), Expect = 3e-08
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 346 EKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQ 403
E+ Y C E+C F Q GSL +H +HT ++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK--------PFQ----------------- 36
Query: 404 KSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C +C + F L H+ HT ++PF CD+C F ++H K+H
Sbjct: 37 ---CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 68.0 bits (167), Expect = 1e-14
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 286 HSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCS--VCGKAFADITNMKVHMR 341
SG C C ++F + L H K H + C CGK+F ++K HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 342 IHTGEKKYVCETCGASF 358
+H+ + Y+CE G S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 52.2 bits (126), Expect = 5e-09
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 27/102 (26%)
Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIR 402
+G C+ G CG + N + L H +Y H +
Sbjct: 2 SSGSSGMPCDFPG-------------------------CGRIFSNRQYLNHHKKYQHIHQ 36
Query: 403 QKSICD--VCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAF 442
+ C CGK F KK LKEHM +H+ R ++C+ +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 40.6 bits (96), Expect = 4e-05
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 410 CGKEFKMKKRLKEHM-AVHTTDRPFVCD--MCPSAFKLKKHLQQHYKVH 455
CG+ F ++ L H H + F C C +F KKHL++H K+H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 26.4 bits (59), Expect = 5.4
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 280 TSHLDIHSGEKDHCCHICKKVF 301
H+ +HS +D+ C
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 67.2 bits (165), Expect = 2e-14
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNV---VCSYCGNTYKNPKSL 391
+ R H+GEK Y C C A F Q G++ H L NV C +C L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 392 ESHIRYAHT 400
H+R H+
Sbjct: 62 GVHLRKQHS 70
Score = 63.7 bits (156), Expect = 4e-13
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 277 GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH--EKVRDHQCSVCGKAFADIT 334
G S HSGEK + C+IC F + + HI E V C C A +
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKS 59
Query: 335 NMKVHMR-IHTGEKKY 349
++ VH+R H+
Sbjct: 60 DLGVHLRKQHSYSGPS 75
Score = 61.4 bits (150), Expect = 2e-12
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGE--KKYVCETCGASFVQWGSLNQHN-LVHT 372
++C +C F MK+H+ E K+ C C + L H H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 44.0 bits (105), Expect = 3e-06
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 390 SLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT--TDRPFVCDMCPSAFKLKKH 447
S S R H+ + C +C F +K H+ F C C + K
Sbjct: 2 SSGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 448 LQQH 451
L H
Sbjct: 61 LGVH 64
Score = 36.0 bits (84), Expect = 0.002
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 420 LKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
H+ ++P+ C +C + F ++ H
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
Score = 33.6 bits (78), Expect = 0.014
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 57 YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
Y C C F +++H+ +H +N+ F C C + R SDL H++ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAK----FHCPHCD-TVIARKSDLGVHLRKQH 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 65.6 bits (161), Expect = 7e-14
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
CS C + + +++H RIH ++ + C C Q +L++H
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 53.3 bits (129), Expect = 1e-09
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
S C C L H + +H R +C+ C +N+ HM+ G
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 346 EKKY 349
+
Sbjct: 63 DMSG 66
Score = 50.2 bits (121), Expect = 2e-08
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C C K L+ H +H TDRPF C+ C K +L +H K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/88 (14%), Positives = 20/88 (22%), Gaps = 28/88 (31%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHT 400
+ C C S +L H +H +K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTD--------RPFK-------------- 39
Query: 401 IRQKSICDVCGKEFKMKKRLKEHMAVHT 428
C+ C + K L +HM
Sbjct: 40 ------CNYCSFDTKQPSNLSKHMKKFH 61
Score = 29.8 bits (68), Expect = 0.30
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 425 AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ ++ P C C + K L+ H ++H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 65.5 bits (160), Expect = 8e-14
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHT---GEKKYVCETCGASFVQWGSLNQHNLVH 371
QC +CG ++ H R H ++ CE CG F + S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 56.3 bits (136), Expect = 1e-10
Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 25/98 (25%)
Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTIR 402
+G CE CG + Q SLN H H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRF---------------------- 39
Query: 403 QKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPS 440
C+ CGK F+ + H +
Sbjct: 40 ---PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
Score = 53.2 bits (128), Expect = 2e-09
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIK--AVHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
SG C IC + +L H + A C CGK F ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 344 TGEKKYVCETC 354
+
Sbjct: 62 HPALLLAPQES 72
Score = 52.0 bits (125), Expect = 4e-09
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTT---DRPFVCDMCPSAFKLKKHLQQHYKVH 455
C++CG + K L H H F C+ C F+ + H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 35.8 bits (83), Expect = 0.002
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHS---GEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRD 320
+C C H H+ C C K F + ++ H H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 321 HQCSVCGKAFA 331
G +
Sbjct: 68 APQESSGPSSG 78
Score = 31.2 bits (71), Expect = 0.11
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 57 YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHC 116
C C K L H + H + + F C+ CG R F + + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALR--FPCEFCGKR-FEKPDSVAAHRSKSHP 63
Query: 117 E 117
Sbjct: 64 A 64
Score = 29.3 bits (66), Expect = 0.51
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ C++C + K L H + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH 30
Score = 27.4 bits (61), Expect = 2.1
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 182 HSCQKCEESFDNCNNLWSHMFIKHENSD----FVCNLCPSHSKVLVRYVHSAVRHMKKHH 237
C+ C + +L H H + F C C K S H K H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFC---GKRF-EKPDSVAAHRSKSH 62
Query: 238 KLQLSIPKA 246
L P+
Sbjct: 63 PALLLAPQE 71
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 64.0 bits (157), Expect = 2e-13
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
++C C +F N+ H +HTGEK Y C CGA F + +L H +H+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 60.5 bits (148), Expect = 5e-12
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
H + +K + C C+ F NL H K VH + ++C++CG F N+K H
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 340 MRIHTGEKKY 349
RIH+GEK Y
Sbjct: 65 TRIHSGEKPY 74
Score = 53.6 bits (130), Expect = 1e-09
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 28/99 (28%)
Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESH 394
+ H + +K Y C+ C ASF G+L H VHT Y+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK--------PYR-------- 47
Query: 395 IRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
C++CG +F LK H +H+ ++P+
Sbjct: 48 ------------CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CD C F+ K L H VHT ++P+ C++C + F +L+ H ++H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 34.4 bits (80), Expect = 0.007
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 420 LKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
H + +D+P+ CD C ++F+ K +L H VH
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH 40
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 64.6 bits (158), Expect = 3e-13
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 277 GGFTSHLDIHSGEKDHCCHI--CKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFAD 332
G S + H C C KV+ + +L H++ H + ++C+ C FA
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFAR 59
Query: 333 ITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+ H R HTG K + C C SF + L H H
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 56.5 bits (137), Expect = 2e-10
Identities = 32/118 (27%), Positives = 41/118 (34%), Gaps = 32/118 (27%)
Query: 315 HEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLV 370
EK R H C C K + +++K H+R HTGEK Y C E C F + L +H
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 371 HTAVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
HT + C VC + F L HM H
Sbjct: 70 HT--------------------GAKPFQ--------CGVCNRSFSRSDHLALHMKRHQ 99
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 62.1 bits (152), Expect = 1e-12
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 278 GFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMK 337
G + IHSGEK + C C K F R LV H + VH + ++C CGKAF+ + +
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 338 VHMRIHTGEKKY 349
H RIHT
Sbjct: 60 NHQRIHTSGPSS 71
Score = 61.3 bits (150), Expect = 2e-12
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+ C CGKAF+ + + H R+HTGEK Y C CG +F Q L H +HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 49.8 bits (120), Expect = 2e-08
Identities = 28/96 (29%), Positives = 33/96 (34%), Gaps = 30/96 (31%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLESHIRY 397
IH+GEK Y C CG +F + L QH VHT G YK
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT---------GEKPYK----------- 44
Query: 398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
C CGK F L H +HT+
Sbjct: 45 ---------CLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 43.6 bits (104), Expect = 3e-06
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C CGK F L +H VHT ++P+ C C AF L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 33.2 bits (77), Expect = 0.018
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 420 LKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+H+ ++P+ C C AF L QH +VH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH 37
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 61.7 bits (151), Expect = 2e-12
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
++C CGK+F+ +++ H R HTGEK Y C+ CG +F+Q L H+ VHT
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 57.8 bits (141), Expect = 4e-11
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVH 339
+ + C C K F +L H + H + ++C CGKAF +++ H
Sbjct: 7 GRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 340 MRIHTGEKKY 349
R+HTG
Sbjct: 66 HRVHTGSGPS 75
Score = 49.4 bits (119), Expect = 4e-08
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 30/100 (30%)
Query: 335 NMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNT-YKNPKSLES 393
+ ++Y C+ CG SF L++H HT G YK
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT---------GEKPYK------- 48
Query: 394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
CD CGK F + L H VHT P
Sbjct: 49 -------------CDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 43.6 bits (104), Expect = 4e-06
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
CD CGK F L +H HT ++P+ CD C AF + HL H++VH
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 32.8 bits (76), Expect = 0.026
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 420 LKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
R + CD C +F L +H + H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 61.0 bits (149), Expect = 4e-12
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 286 HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIH 343
+ C K + + +L H++ H + + C CG FA + H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVH 371
TG + + C+ C +F + L H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 55.6 bits (135), Expect = 4e-10
Identities = 33/142 (23%), Positives = 41/142 (28%), Gaps = 54/142 (38%)
Query: 315 HEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV 374
+ CGK + +++K H+R HTGEK Y
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH------------------------ 37
Query: 375 NVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFV 434
C + G CG +F L H HT RPF
Sbjct: 38 ---CDWDG---------------------------CGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 435 CDMCPSAFKLKKHLQQHYKVHL 456
C C AF HL H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 30.6 bits (70), Expect = 0.22
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIK 312
T H H+G + C C + F R +L H+K
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 57.9 bits (141), Expect = 2e-11
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNL-VHT 372
C VC +AFA ++K H R HT EK Y C C +F + L +H +H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 42.5 bits (101), Expect = 6e-06
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHY-KVH 455
C+VC + F ++ LK H HT ++P+ C +C AF + L +H K+H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 42.1 bits (100), Expect = 8e-06
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 290 KDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHM-RIHTGEK 347
+ C +C + F R +L H + H + + C +C +AF + H +IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 33.2 bits (77), Expect = 0.013
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 264 YKCPDCSAILLSYGGFT--SHLD----IHSGEKDHCCHICKKVFLRYRNLVCHIKAVH 315
+ C C+ F HL H+ EK + C +C + F R L+ H + +H
Sbjct: 3 FVCEVCTR------AFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 28.2 bits (64), Expect = 0.67
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 347 KKYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIRYAHT 400
+ +VCE C +F + L +H HT C C + L H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 28.2 bits (64), Expect = 0.88
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 431 RPFVCDMCPSAFKLKKHLQQHYKVH 455
R FVC++C AF ++HL++HY+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.2 bits (139), Expect = 6e-11
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 311 IKAVHEKVRDHQCSVCGKAFADITNMKVHMRI--HTGEKKYVCETCGASFVQWGSLNQHN 368
++ E ++C VC + + I+N H K Y C C F + ++ H
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 369 LVHTAV 374
+ +
Sbjct: 61 KIIHKI 66
Score = 54.9 bits (133), Expect = 4e-10
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIK-AVHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
GE + C +C +V+ N H + V+ + C C K F NM H++I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 344 TG 345
Sbjct: 64 HK 65
Score = 45.2 bits (108), Expect = 8e-07
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 407 CDVCGKEFKMKKRLKEHM--AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C VC + + H + + + C C F K ++ H K+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 44.9 bits (107), Expect = 1e-06
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNV---VCSYCGNTYKNPKSLESHIRY 397
GE Y C+ C + + +H + NV C +C + ++ +H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 398 AHTI 401
H I
Sbjct: 63 IHKI 66
Score = 30.2 bits (69), Expect = 0.16
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 57 YHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
Y C C +V+ H HK N+ + C C F R ++ H++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKV----YPCPFCFKE-FTRKDNMTAHVKIIH 64
Score = 28.3 bits (64), Expect = 0.98
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + C +C + + +HY
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTS 33
Score = 25.6 bits (57), Expect = 8.9
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 182 HSCQKCEESFDNCNNLWSHMFIKHENSD--FVCNLCPSHSKVLVRYVHSAVRHMKKHHKL 239
+ C+ C + + +N H H+ + + C C K R + H+K HK+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC---FKEFTRKDN-MTAHVKIIHKI 66
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 57.9 bits (139), Expect = 1e-10
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 334 TNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLES 393
++ K++ I TG K+ C+ C A++ L H N S
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 394 HIRY-----AHTIRQKSICDVCGKEFKMKKRLKEHMA 425
++ C CG F+ + L HM
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 47.8 bits (113), Expect = 4e-07
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRD----HQCSVCGKAFADITN 335
+ I +G C C + L H+ D + + +
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS 67
Query: 336 MKVHMRIHTGEKKYVCETCGASFVQWGSLNQH 367
+ +K C CG SF L+ H
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 37.4 bits (86), Expect = 0.001
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 264 YKCPDCSAILLSYGGFTSHLDI-----HSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKV 318
++C DCSA + T H++ + + + R R+L+ + +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQ 78
Query: 319 RDHQCSVCGKAFADITNMKVHMR 341
+ +C CG +F + ++ VHM
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMI 101
Score = 29.3 bits (65), Expect = 1.1
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 420 LKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQH 451
K + ++ T F C C +A+ L H
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 53.8 bits (129), Expect = 2e-09
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 285 IHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQ--------CSVCGKAFADITNM 336
I + C + F LV H+ H + C GK+F +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 337 KVHMRIHTGEKKYVC 351
H+R+HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 42.3 bits (99), Expect = 2e-05
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVC--------GKEFKMKKRLKEHMAVHTT 429
C T+ L +H+ H + VC GK FK K +L H+ VHT
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 430 DRPFVC 435
++
Sbjct: 88 EKSGPS 93
Score = 34.6 bits (79), Expect = 0.012
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 314 VHEKVRDHQCSVCGKAFADITNMKVHM-RIHTGEKKYV--------CETCGASFVQWGSL 364
+ E C + F+ + + H+ H G + C G SF L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 365 NQHNLVHT 372
H VHT
Sbjct: 79 VNHIRVHT 86
Score = 31.1 bits (70), Expect = 0.17
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 399 HTIRQKSICDVCGKEFKMKKRLKEHM-AVHTTDRPFVCDMCP--------SAFKLKKHLQ 449
+ C + F L H+ H +C +FK K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 450 QHYKVH 455
H +VH
Sbjct: 80 NHIRVH 85
Score = 29.9 bits (67), Expect = 0.44
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 24 SHSSDADEIKQELSCEQCGCSLDFHSALYTKDVYHCADCEQVFLDKFVLELHLKIEHKDN 83
S S IKQELSC+ + C++ F L H+ +EH
Sbjct: 2 SSGSSGQPIKQELSCKWIDE---------AQLSRPKKSCDRTFSTMHELVTHVTMEHVGG 52
Query: 84 MFPKSH---WFVCKMCGHRLFMRLSDLRRHMQ 112
+H W C G + F L H++
Sbjct: 53 PEQNNHVCYWEECPREG-KSFKAKYKLVNHIR 83
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 52.2 bits (126), Expect = 5e-09
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 321 HQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVNV 376
+ C CGKAF +KVH HT + Y C E C F L +H VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 377 -VCSYCGNTYKNPKSLESHIRYAH 399
C K H+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 51.5 bits (124), Expect = 7e-09
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 297 CKKVFLRYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 354
C K F ++ L H H + ++C C K F+ + +K H ++H G ++C
Sbjct: 9 CGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67
Query: 355 GASFVQWGSLNQH 367
W +H
Sbjct: 68 SFVGKTWTLYLKH 80
Score = 32.6 bits (75), Expect = 0.042
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 280 TSHLDIHSGEKDHCCH--ICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMK 337
H H+ + + C C K F L H K VH + C T
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYL 78
Query: 338 VHMR 341
H+
Sbjct: 79 KHVA 82
Score = 27.6 bits (62), Expect = 2.3
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 264 YKC--PDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH 315
Y+C C H +H+G C V + + H+ H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 50.2 bits (121), Expect = 7e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
+ C +CG F + +K H+RIHTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 48.6 bits (117), Expect = 3e-08
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GEK Y CE CG F +L H +HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPF 433
C++CG F+ + LK H+ +HT P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.7 bits (73), Expect = 0.028
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
++P+ C++C + F+ + L+ H ++H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 24.8 bits (55), Expect = 8.9
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEK 290
Y C C SHL IH+G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSG 38
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.2 bits (121), Expect = 9e-09
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GEK Y CETCGA FVQ L H L+HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 44.8 bits (107), Expect = 6e-07
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
++C CG F + +++ H+ IHTG
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 34.4 bits (80), Expect = 0.003
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
++P+ C+ C + F HL+ H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 31.3 bits (72), Expect = 0.036
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPF 433
C+ CG F L+ H+ +HT P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEK 290
YKC C A + +H+ IH+G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSG 38
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 51.2 bits (123), Expect = 9e-09
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 303 RYRNLVCHIKAVHEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQ 360
NL+ ++ + + C V C + F+ + H+RIHTG+K + C C +F +
Sbjct: 5 PMNNLLNYVV-PKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Query: 361 WGSLNQHNLVHT 372
L H HT
Sbjct: 62 SDHLTTHIRTHT 73
Score = 42.7 bits (101), Expect = 8e-06
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C + F L H+ +HT +PF C +C F HL H + H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.5 bits (72), Expect = 0.066
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 280 TSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIK 312
T H+ IH+G+K C IC + F R +L HI+
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 31.1 bits (71), Expect = 0.099
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 32/96 (33%)
Query: 335 NMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLE 392
N+ ++ + Y C E+C F + L +H +HT
Sbjct: 8 NLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ------------------ 47
Query: 393 SHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
+ C +C + F L H+ HT
Sbjct: 48 ----------KPFQCRICMRNFSRSDHLTTHIRTHT 73
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 49.9 bits (120), Expect = 1e-08
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 311 IKAVHEKVRDHQCSVCGKAFADITNMKVHM-RIHTGEKKYVCETCGASF 358
+ + + C CGK F+ ++ H+ ++HT E+ + C+ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 47.6 bits (114), Expect = 9e-08
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 281 SHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFAD 332
S S K + C C K F R +L HIK VH R H+C V +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 39.5 bits (93), Expect = 6e-05
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 407 CDVCGKEFKMKKRLKEHM-AVHTTDRPFVCDMCPSAF 442
C CGK F L H+ VHT++RP C + S
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHN-LVHT 372
+ K Y+C++CG F + LN H VHT
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 31.4 bits (72), Expect = 0.052
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYK-VH 455
+ + +P++C C F HL H K VH
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 50.5 bits (121), Expect = 2e-08
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 315 HEKVRDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLV 370
++R H CS CGK + +++K H R HTGEK + C + C F + L++H
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 371 H 371
H
Sbjct: 72 H 72
Score = 38.9 bits (91), Expect = 2e-04
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 399 HTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKV 454
+ + IC CGK + LK H HT ++PF C C F L +H +
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 455 H 455
H
Sbjct: 72 H 72
Score = 27.7 bits (62), Expect = 1.5
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 337 KVHMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHT 372
+ + ++C CG ++ + L H HT
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43
Score = 25.4 bits (56), Expect = 9.4
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 417 KKRLKEHMAVHTTDRPFVCDM--CPSAFKLKKHLQQHYKVH 455
+ R +C C + HL+ H + H
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 3e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C+ CG SF LN+H++VHT
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 44.8 bits (107), Expect = 8e-07
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
C +CGK+F + + H +HT EK +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 33.2 bits (77), Expect = 0.010
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++PF CD+C +F + L +H VH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 32.5 bits (75), Expect = 0.017
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
CD+CGK F + RL H VHT ++P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 48.9 bits (116), Expect = 3e-08
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+ C CG + +K H+R HT + Y C C SF G+L +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 42.4 bits (99), Expect = 6e-06
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
C+ CG K LK+H+ HT RP+ C C +FK K +L +H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 39.3 bits (91), Expect = 9e-05
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKK 348
C C + L HI+ H VR + C+ C +F N+ HM+ KK
Sbjct: 4 CEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 33.9 bits (77), Expect = 0.006
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHT 428
+C CG K P L+ HIR HT + C C FK K L +HM
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 31.2 bits (70), Expect = 0.076
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 348 KYVCETCGASFVQWGSLNQHNLVHTAVN-VVCSYCGNTYKNPKSLESHIR 396
KY+CE CG + L +H HT V C+YC ++K +L H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 4e-08
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GEK Y C+ CG +F Q GSL H VHT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 42.2 bits (100), Expect = 5e-06
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
++C CGKAF+ ++ VH+R+HTG
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 32.9 bits (76), Expect = 0.012
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
++P+ CD C AF K L H +VH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 29.5 bits (67), Expect = 0.20
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPF 433
CD CGK F K L H+ VHT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 8e-08
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +FV LNQH VHT
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 45.2 bits (108), Expect = 6e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ C+VCGKAF ++ H+R+HT E +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C++C AF L HL QH +VH
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
C+VCGK F + L +H+ VHT +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 8e-08
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GEK Y C+ CG F Q L H VHT
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT 36
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 313 AVHEKV----RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ ++C VCGK F+ ++++ H R+HTGEK +
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ ++ + CD+C F HLQ H +VH
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.7 bits (73), Expect = 0.035
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
CDVCGKEF L+ H VHT ++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y CE CG +F+ L +H +HT
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ C CGKAF + ++ H RIHTGEK +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 31.0 bits (71), Expect = 0.055
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C AF LQ+H ++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.0 bits (66), Expect = 0.33
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F +L+EH +HT ++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y+C CG +F +L +H +HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT 36
Score = 44.8 bits (107), Expect = 7e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ C+ CGKAF +N+ H +IHT +K +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P++C C AF ++ +L +H K+H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 28.6 bits (65), Expect = 0.47
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F ++ L +H +HT +P
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C CG F + +LN H+ +HT
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT 36
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+C CGK F+ + + VH ++HTGEK +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.034
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++PF C C F + L H+K+H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 29.0 bits (66), Expect = 0.28
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F + L H +HT ++P
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.9 bits (111), Expect = 2e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETC 354
+ C +CGK F D+ ++ H H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 4e-04
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMC 438
+ R++ C++CGK F+ L H H+ ++P+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.8 bits (72), Expect = 0.028
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
K+ CE CG F LN+H L H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS 36
Score = 29.5 bits (66), Expect = 0.24
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
T + C++C F+ HL +H H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C+ CG SF L +H VH+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
+ C CGK+F + + H R+H+GEK
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.094
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C +F+ L +H +VH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 29.5 bits (67), Expect = 0.24
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F+ L +H VH+ ++P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK + CE CG F Q L+ H VHT
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C CGK F + + H R+HTGEK
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.031
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++PF C+ C F L H +VH
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 28.6 bits (65), Expect = 0.45
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F +L H VHT ++P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y CE CG F+ L H++VHT
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT 36
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++C CGK F ++ H +HTGEK +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.084
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C F ++ L H+ VH
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F ++ L H VHT ++P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y CE CG + +L+ H VHT
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C CGK + N+ +H ++HTGE+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 31.7 bits (73), Expect = 0.035
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C + K +L H KVH
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.4 bits (67), Expect = 0.24
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK + K L H VHT +RP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C+ C +F SL QH VH+
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++C VC KAF+ ++ H R+H+GEK
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.031
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ CD+C AF L QH +VH
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
CDVC K F L +H VH+ ++P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK Y C CG + + L+ H VHT
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C CGK + ++ H R+HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 31.0 bits (71), Expect = 0.053
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+ C C +K + L H +VH
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 30.2 bits (69), Expect = 0.097
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
C CGK +K + L H VHT ++
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F SL+ H +H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 44.8 bits (107), Expect = 8e-07
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
CSVCGKAF+ ++ VH RIH+G+K +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.086
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C +C AF ++ L H ++H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C VCGK F ++ L H +H+ +P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK Y C CG +F + LN+H +HT
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++CS CGKAF T++ H RIHTG +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 31.7 bits (73), Expect = 0.036
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+ C C AF HL +H ++H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 28.6 bits (65), Expect = 0.41
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F L EH +HT RP
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F +L H +HT
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 46.0 bits (110), Expect = 3e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++C+ CGKAF D +N+ H +IHTGEK +
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.13
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C AF + +L H K+H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 28.6 bits (65), Expect = 0.47
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F + L H +HT ++P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 2e-07
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F Q +L QH +HT
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C CGKAFA N+ H RIHTGEK
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.025
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C AF K +L QH ++H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 29.0 bits (66), Expect = 0.33
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K L +H +HT ++P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 2e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGE+ Y+C CG +F +L +H +HT
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT 36
Score = 45.6 bits (109), Expect = 4e-07
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+ C+VCGKAF D +N+ H +IHTGEK
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.051
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +RP++C +C AF + +L +H K+H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C VCGK F + L +H +HT ++P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK YVC+ CG +F L +H +HT
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
C CGKAF + H RIHTGEK
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+VCD C AF L L +H ++H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
CD CGK F + L H +HT ++P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK Y C CG +F Q L+ H HT
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT 36
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
+ C+ CGK F+ + + H R HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.075
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+ C+ C F K L H + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F K L H HT ++P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGE+ + C CG SF+Q L QH +HT
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT 36
Score = 42.1 bits (100), Expect = 6e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
H+C+ CGK+F ++ H RIHTGEK
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +RP C+ C +F HL QH ++H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 28.6 bits (65), Expect = 0.39
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L +H +HT ++P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 3e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+ EK Y CE CG + + +L+ H VH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++C CGK + N+ +H R+H GEK +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 32.1 bits (74), Expect = 0.025
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+ C+ C + + +L H +VH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 30.9 bits (71), Expect = 0.062
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK + + L H VH ++
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG+K Y C CG F Q L +H +HT
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
+C+ CGK F +++ H IHTGEK
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.056
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +P+ C+ C F HL +H +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.5 bits (62), Expect = 0.97
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L H +HT ++P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG SF++ L+ H +HT
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 44.5 bits (106), Expect = 9e-07
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++CS CGK+F + + VH RIHTGE +
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 31.4 bits (72), Expect = 0.046
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 28.7 bits (65), Expect = 0.35
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K +L H +HT + P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 47.0 bits (111), Expect = 3e-07
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 275 SYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADIT 334
S G IH G++ C C +F+R ++ + + C C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIR--------RSTLSRRKTPMCEKCRKDSCQEA 53
Query: 335 NMKVHMRIHTGEKKY 349
+ +G+K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 39.6 bits (92), Expect = 9e-05
Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 35/100 (35%)
Query: 334 TNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLES 393
+ +IH G++ C CG F++ +L++
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------------------------- 37
Query: 394 HIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
+ +C+ C K+ + L + + +
Sbjct: 38 ---------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 30.0 bits (67), Expect = 0.24
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 387 NPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKK 446
+ S + H + C CG F + + + +C+ C +
Sbjct: 2 SSGSSGKRQK-IHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 447 HLQQHYKVH 455
L +
Sbjct: 54 ALNKDEGNE 62
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y+C CG SF+Q LN+H +HT
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
+ C+ CGK+F +++ H RIHTGEK
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P++C+ C +F K HL +H ++H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 29.4 bits (67), Expect = 0.19
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F K L H +HT ++P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C CG +F LNQH +HT
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 44.8 bits (107), Expect = 7e-07
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
C CGKAF+D + H RIHTGEK +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.039
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++PF C C AF L QH ++H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 28.6 bits (65), Expect = 0.37
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F L +H +HT ++P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F +L H ++HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT 36
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++C+ CGKAF +N+ H IHTGEK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.046
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C AF+ +L H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 28.6 bits (65), Expect = 0.35
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F+ L H +HT ++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C+ C SF SL H +HT
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C VC K+F +++ VH RIHTGEK
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.083
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ CD+C +F+ L H ++H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 30.2 bits (69), Expect = 0.097
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
CDVC K F+ L H +HT ++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F Q L +H +HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++C+ CGKAF+ + + H RIHTGEK +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.073
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C AF L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 28.3 bits (64), Expect = 0.51
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F +L H +HT ++P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG SF + L+ H +HT
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT 36
Score = 44.8 bits (107), Expect = 8e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++CS+CGK+F + + VH +IHTGEK +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 31.4 bits (72), Expect = 0.048
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C +C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 28.7 bits (65), Expect = 0.42
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C +CGK F K +L H +HT ++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG+K + C CG SF G+L H +HT
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C+ CGK+F N+ H RIHTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 31.0 bits (71), Expect = 0.059
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +PF C C +F+ K +L H ++H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 29.4 bits (67), Expect = 0.22
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F+ K L H +HT ++
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C+ CG +F Q L QH VHT
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT 36
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C CGKAF+ T++ H R+HTGEK
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.031
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C AF HL QH +VH
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 27.9 bits (63), Expect = 0.80
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F L +H VHT ++P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG SF L H HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++CS CGK+F + +++H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 31.0 bits (71), Expect = 0.063
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C +F K L+ H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 29.4 bits (67), Expect = 0.19
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K RL+ H HT +R
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C+ CG SF + L +H +H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+ C CGK+F+ + H R+H+GEK
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.065
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++ + C C +F L +H ++H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 28.6 bits (65), Expect = 0.46
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F L +H +H+ ++P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+ E + +QCS CGK+F+ + H HT EK
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GEK Y C CG SF L QH + HT
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT 36
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ ++P+ C C +F L QH+ H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F RL +H HT ++P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG K Y+C CG +F + SL H ++HT
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
+ C+ CGKAF+ +++ H IHTGEK
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.10
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +P++C+ C AF + L H +H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.6 bits (65), Expect = 0.36
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F + L H +HT ++P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
G+K + C C +F Q SL H +HT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C+ C K F +++ VH RIHTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.091
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + F C+ C F L H ++H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.6 bits (65), Expect = 0.42
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ C K F L H +HT ++P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.5 bits (109), Expect = 4e-07
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C C +F +L H HT
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C+ C KAF +N+ VH R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.082
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C AF K +L H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 28.2 bits (64), Expect = 0.46
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ C K F K L H HT +
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.3 bits (108), Expect = 4e-07
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F S QH +HT
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT 36
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++C CGKAF D ++ H R+HTG++
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C AF QH ++H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 28.7 bits (65), Expect = 0.34
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F +H +HT RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C+ C +F Q L QH HT
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT 36
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++C VC KAF ++ H + HTGEK
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C +C AF K HL QH K H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C VC K F K L +H HT ++P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 45.2 bits (108), Expect = 5e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
CS C KAF+ + + VH + H EK +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK + C C +F L H H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 31.0 bits (71), Expect = 0.048
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C C K F K L H H ++P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 425 AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++PF C C AF K +L H + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C+ CG +F L QH+ VH+
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+C VCGKAF +++ H +H+GE+ +
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 32.1 bits (74), Expect = 0.023
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C +C AF++ HL QH+ VH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C VCGK F++ L +H +VH+ +RP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
HQC CG+ F +++ H RIHTGEK +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 7e-07
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+ K + C CG F LNQH +HT
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ ++ + C C F LK HL QH ++H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 30.2 bits (69), Expect = 0.094
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CG+ F +K L +H +HT ++P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK+Y C CG F + L+QH +HT
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT 36
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++C+ CGK F+ + + H +IHTGEK +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.029
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++ + C+ C F L QH K+H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F +L +H +HT ++P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGE+ Y C CG +F+Q +L+ H +H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR 36
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++CS CGKAF + + +H RIH GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.023
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +R + C C AF K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 28.6 bits (65), Expect = 0.40
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K L H +H ++P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK + CE CG F Q L+ H VHT
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
QC CGK F +++ H R+HTGEK +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++PF C+ C F HL H +VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 28.3 bits (64), Expect = 0.53
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L H VHT ++P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ R H+CS CGK F +N H RIHTGEK +
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 44.5 bits (106), Expect = 1e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GE+ + C CG F+Q + QH +HT
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 31.4 bits (72), Expect = 0.045
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ +R C C F + QH ++H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F +H +HT ++P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG K Y C CG +F Q L +H VHT
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+QC+ CGKAF+ + + H R+HTGEK +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 31.0 bits (71), Expect = 0.063
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +P+ C+ C AF L +H +VH
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 27.9 bits (63), Expect = 0.67
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F +L H VHT ++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK Y C CG F Q L H +HT
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C+ CGK F +++ H RIHTGEK
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.050
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+ C+ C F HL H+++H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 27.8 bits (63), Expect = 0.74
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L H +HT ++P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGE ++C CG F +L H +HT
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT 36
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
CS CGK F TN+ +H +IHTGE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 31.7 bits (73), Expect = 0.030
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T + PF+C C F K +L H K+H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 29.0 bits (66), Expect = 0.29
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K L H +HT +RP
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F + L+ H HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 44.8 bits (107), Expect = 8e-07
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++CS CGKAF + + +H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 29.8 bits (68), Expect = 0.17
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C AF K L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 29.4 bits (67), Expect = 0.22
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K L H HT +R
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F SL H +HT
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT 36
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++C+ CGKAF+ +++ H IHTG+K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 30.6 bits (70), Expect = 0.082
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C AF ++ L H +H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F ++ L H A+HT +P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C CG SF L H +HT
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHT 36
Score = 44.8 bits (107), Expect = 6e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+C+ CGK+F+ + + H RIHTGEK +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 30.5 bits (70), Expect = 0.072
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++PF C C +F + L H ++H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 28.6 bits (65), Expect = 0.39
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F + +L H +HT ++P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+CS C KAF +N+ VH R HTGEK +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C C +F +L H HT
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT 36
Score = 30.5 bits (70), Expect = 0.093
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++PF C C AF K +L H + H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 28.6 bits (65), Expect = 0.41
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C C K F K L H HT ++P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 6e-07
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C CG S+ Q L QH VHT
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 42.1 bits (100), Expect = 6e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C CGK++ ++ H R+HTGEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++PF C C ++ + HL QH +VH
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 29.0 bits (66), Expect = 0.33
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK + + L +H VHT ++P
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+ C+ CGKAF + + +H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG K YVC CG +F L H HT
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 31.7 bits (73), Expect = 0.034
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +P+VC+ C AF+ K +L H + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 28.6 bits (65), Expect = 0.35
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F+ K L H HT +
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.9 bits (107), Expect = 6e-07
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK + CE CG F H H+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 355
+C CGK F + H R H+GEK G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 30.6 bits (70), Expect = 0.091
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++PF C+ C F H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 28.7 bits (65), Expect = 0.38
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
C+ CGK F + H H+ ++P
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCC 294
+KC +C + SH HSGEK
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 7e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG K + C CG +F + +L+ H +HT
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
+C+ CGKAF + + +H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.043
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T + F C C AF K L H K+H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.0 bits (66), Expect = 0.29
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K L H +HT ++P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 7e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ CS CGKAF+ + + +HMR H+GEK +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GEK Y C CG +F L H H+
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 31.0 bits (71), Expect = 0.062
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ ++P+ C C AF K +L H + H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 28.3 bits (64), Expect = 0.57
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K L HM H+ ++P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 7e-07
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG F Q L +H +HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT 36
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+C+ CGK F +++ H IHTGEK +
Sbjct: 14 KCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.048
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 27.8 bits (63), Expect = 0.88
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L H +HT ++P
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 7e-07
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG F Q L H +HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+C+ CGK F +++ H RIHTG K +
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.040
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C F HL H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 28.3 bits (64), Expect = 0.56
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L H +HT +P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 7e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGE+ Y C CG +F + +L H +HT
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHT 36
Score = 44.4 bits (106), Expect = 8e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++CS CGKAFA + + +H RIHTGEK +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +R + C C AF K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 28.6 bits (65), Expect = 0.41
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K L H +HT ++P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 7e-07
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C+ CGKAF + + +H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK C CG +F L H H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 30.6 bits (70), Expect = 0.071
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P C C AF K L H + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 30.6 bits (70), Expect = 0.082
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K +L H H D+
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 8e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++C C K F I ++ H R+HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+G+K Y C+ C +F+Q G LNQH VHT
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 31.7 bits (73), Expect = 0.034
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + +P+ C C F HL QH +VH
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 31.4 bits (72), Expect = 0.049
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C C K F L +H VHT +R
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.5 bits (106), Expect = 8e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
T K Y C CG +F + L +H +HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 37.2 bits (87), Expect = 4e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+ C+ CGKAF I ++ H +IHT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 34.9 bits (81), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 422 EHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T + + C+ C AF HL +H K+H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 9e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ + H C CGK F I+ +++H R+H GEK +
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK + C+ CG +F +L H VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 31.0 bits (71), Expect = 0.050
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++ CD C F L+ H +VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 27.6 bits (62), Expect = 0.90
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
CD CGK F L+ H VH ++
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 9e-07
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG++ Y C CG +F SL H HT
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C CGKAF +++ H R HTGEK
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.026
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T RP+ C C AFK K L H + H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK FK K L H HT ++P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 9e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG F L++H +HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 352
++C+ CGK F + + H RIHTGEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.048
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C F+ +L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F+ L H +HT ++P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 9e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK + C+ CG +F Q L H +HT
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT 36
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+C CGKAF ++ H+RIHTGEK +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.018
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++PF C C AF+ HL H ++H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 28.6 bits (65), Expect = 0.47
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F+ L H+ +HT ++P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ CS C K F+ + + VH R HTG K +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TG K Y C C +F L H HT
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT 36
Score = 30.6 bits (70), Expect = 0.069
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T +P+ C C F LK L H + H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 28.7 bits (65), Expect = 0.36
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C C K F +K +L H HT +P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 338 VHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGE Y C CG +F + L H H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA 36
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 313 AVHEKV----RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C CGKAF+ + H R H GEK
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.039
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T + P+ C C AF K L H + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 28.2 bits (64), Expect = 0.64
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K +L H H ++P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK Y C CG +F+ L H H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA 36
Score = 42.5 bits (101), Expect = 5e-06
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C+ CGKAF + + VH R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 30.6 bits (70), Expect = 0.085
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+ C+ C AF K L H + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 28.3 bits (64), Expect = 0.60
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F K L H H
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG F + L +H L+HT
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT 36
Score = 43.2 bits (103), Expect = 2e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++C CGK F +++ H IHTGEK +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.023
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C C F+ HL +H +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 28.6 bits (65), Expect = 0.39
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F+ L H +HT ++P
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG F Q L +H +HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 41.7 bits (99), Expect = 8e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+C+ CGK F +++ H IHTGEK +
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 30.9 bits (71), Expect = 0.055
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.9 bits (63), Expect = 0.78
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L H +HT ++P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 46.5 bits (109), Expect = 1e-06
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 294 CHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
H+ + RY L K + + + D ++ + ++VC
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRA--IVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 354 CGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHTI 401
C F SL QH VC C + + S H+ H I
Sbjct: 80 CLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 34.9 bits (79), Expect = 0.013
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 8/116 (6%)
Query: 342 IHTGEKKYVC--ETCGASFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIR--- 396
+ +G KKY+ + H L ++ + NP+ L+
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 397 -YAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQH 451
A + +C +C F LK+H+ T+ VC +C F H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDH 119
Score = 32.6 bits (73), Expect = 0.098
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 261 KVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRD 320
+ K + LL + L C +C F +L HI
Sbjct: 44 RAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI---RYTEHT 100
Query: 321 HQCSVCGKAFADITNMKVHMR 341
C VC K F + H+
Sbjct: 101 KVCPVCKKEFTSTDSALDHVC 121
Score = 31.1 bits (69), Expect = 0.33
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 264 YKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVR 319
+ CP C S H+ K C +CKK F + + H+ H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKHNICV 128
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C CG SF L H +HT
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT 36
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
H+C CGK+F+ + + VH RIHTGE
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 30.6 bits (70), Expect = 0.079
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P C C +F L H ++H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 28.3 bits (64), Expect = 0.55
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F +L H +HT + P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG +F SL H H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C+ CGKAF +++ +H H+GEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F+ + L H A H+ ++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C AF+ + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK Y C CG F Q L +H VHT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 41.7 bits (99), Expect = 8e-06
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
++C+ CGK F +++ H R+HTG K +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 31.0 bits (71), Expect = 0.054
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++P+ C+ C F HL +H +VH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 27.9 bits (63), Expect = 0.67
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L H VHT +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++CS CGKAF + H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GE Y C CG +F + L H H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + P+ C C AF K L H + H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 29.4 bits (67), Expect = 0.22
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K +L H H +
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++CS C K+F+ + VH R+HT EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
G Y C C SF L H +HT
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT 36
Score = 31.4 bits (72), Expect = 0.048
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C C K F K RL H +HT ++P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 30.6 bits (70), Expect = 0.087
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ P+ C C +F K L H ++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ R +C+ CGK F +++ H+R+H+ EK +
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GE+ + C CG F + L H +H+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + +RPF C+ C F + HL H ++H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 31.0 bits (71), Expect = 0.057
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F + L H+ +H+ ++
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+C C F+ +++++H +H GEK
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GEK + C C F Q SL H VH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 29.8 bits (68), Expect = 0.13
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C C F L+ H VH ++P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ ++ + C C F L+ H VH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGEK + C+ CG +F SL +H H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
Score = 41.8 bits (99), Expect = 9e-06
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
QC CG F+ ++ H+R H +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 31.0 bits (71), Expect = 0.058
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCD 436
C CG F L +H+ H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 31.0 bits (71), Expect = 0.059
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T ++PF C C F L +H + H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 43.0 bits (102), Expect = 3e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GE Y+C CG SF Q GSL H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 43.0 bits (102), Expect = 3e-06
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
+ C CGK+F ++ VH R +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 31.9 bits (73), Expect = 0.029
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPF 433
+C CGK F + L H + P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 28.4 bits (64), Expect = 0.51
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ P++C C +F + L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHN-LVHT 372
TG+K Y C CG +F+Q SL +H HT
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT 37
Score = 39.1 bits (92), Expect = 8e-05
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 321 HQCSVCGKAFADITNMKVHMR-IHTGEKKYVC 351
++C CGKAF T++ H R HTGEK
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 27.9 bits (63), Expect = 0.87
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQH 451
+ T +P+ C C AF L +H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 25.6 bits (57), Expect = 5.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 407 CDVCGKEFKMKKRLKEHM-AVHTTDRPFVC 435
C CGK F L H HT ++P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-06
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 353
+ R + C+ CGK F +++ H++ H EK +
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 42.5 bits (101), Expect = 4e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GE+ Y C CG +F + L +H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + +RP+ C+ C F HL +H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 31.7 bits (73), Expect = 0.036
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C+ CGK F L EH+ H ++
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 42.6 bits (101), Expect = 4e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKY 349
++C CGK+F ++ +H RIHTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+G++ Y C+ CG SF Q GSL H +HT
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 29.5 bits (67), Expect = 0.20
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ R + C C +F+ K L H ++H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.9 bits (63), Expect = 0.66
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPF 433
C CGK F+ K L H +HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
++C CGK F+ + H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
TGE Y C CG F + L H H+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 30.9 bits (71), Expect = 0.055
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ T + P+ C C F K L H K H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 29.0 bits (66), Expect = 0.24
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C CGK F K +L H H+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 42.6 bits (99), Expect = 2e-05
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDM 437
C C + SH R R ++C C F + +EH + + C
Sbjct: 19 CRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE 74
Query: 438 CPSAFKLKKHLQQH 451
C FK + +H
Sbjct: 75 CMRTFKSSFSIWRH 88
Score = 42.2 bits (98), Expect = 2e-05
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAVNVVC 378
+QC +C + + H R+ VC C F +H + C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTC 72
Query: 379 SYCGNTYKNPKSLESHIRYAHT 400
C T+K+ S+ H H
Sbjct: 73 LECMRTFKSSFSIWRHQVEVHN 94
Score = 33.3 bits (75), Expect = 0.036
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 288 GEKDHCCHICKKVFLRYRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
++ + C +C H + C C F + H K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAA---VCPYCSLRFFSPELKQEHES-KCEYK 68
Query: 348 KYVCETCGASFVQWGSLNQH 367
K C C +F S+ +H
Sbjct: 69 KLTCLECMRTFKSSFSIWRH 88
Score = 27.2 bits (59), Expect = 4.4
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
C +C + H + VC C F + Q+H K
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKCEYK 68
Score = 26.8 bits (58), Expect = 7.6
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 257 HVNKKVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHE 316
V K Y+C C+A L S SH + C C F H
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH--ESKC 65
Query: 317 KVRDHQCSVCGKAFADITNMKVH 339
+ + C C + F ++ H
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRH 88
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 8e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 341 RIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+GEK Y C C +F L QH +HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 35.8 bits (83), Expect = 0.001
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 321 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 351
+ C+ C + F+D + H ++HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.5 bits (77), Expect = 0.007
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 425 AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + ++P+ C C F L QH K+H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 25.4 bits (56), Expect = 6.0
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVC 435
C C + F RL +H +HT
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 38.8 bits (91), Expect = 1e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET 353
+ C+ CG F+ + H R H+G K +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 37.7 bits (88), Expect = 3e-04
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 339 HMRIHTGEKKYVC--ETCGASFVQWGSLNQHNLVHT 372
TGEK + C CG F + L++H H+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38
Score = 30.3 bits (69), Expect = 0.094
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 393 SHIRYAHTIRQKSICDV--CGKEFKMKKRLKEHMAVHTTDRPFVCD 436
S + T + C CG F L H H+ +P
Sbjct: 2 SSGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.3 bits (69), Expect = 0.12
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 423 HMAVHTTDRPFVCD--MCPSAFKLKKHLQQHYKVH 455
+ T ++PF C C F L +H + H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 53/181 (29%)
Query: 1 MVWTCCK--CIAKYTSRSHLSLHLLS-------------HSS--DADEIKQELSCEQCGC 43
+V K + K S +S+ + H S D I + +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 44 -SLD--FHSALYTKDVYHCADCEQ---------VFLD-KFVLELHLKIEHKDNMFPKSHW 90
LD F+S + +H + E VFLD +F L KI H + W
Sbjct: 467 PYLDQYFYSHI----GHHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDS-----TAW 514
Query: 91 FVCKMCGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDI-TFPCEECKELCVLSKY 149
+ +L + ++ D ++ + I F + +E + SKY
Sbjct: 515 NASGSILN-TLQQLKFYKPYICDNDPKYE--------RLVNAILDF-LPKIEENLICSKY 564
Query: 150 C 150
Sbjct: 565 T 565
Score = 29.4 bits (65), Expect = 3.2
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 42/176 (23%)
Query: 282 HLDIHSGEKDHCCHICKKVFLR--YRNLVCHIKAVHEKVRDHQCSVCGKA-FADITNMKV 338
H+D +GE + VF N C + V+D S+ K I K
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDC------KDVQDMPKSILSKEEIDHIIMSK- 58
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLN-QHNLVHTAVNVVCSYCGNTYKNPKSLESHIRY 397
+ W L+ Q +V V V N K L S I+
Sbjct: 59 ----DAVSGTL--------RLFWTLLSKQEEMVQKFVEEVLR------INYKFLMSPIKT 100
Query: 398 AHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSA---FKLKKHLQQ 450
RQ S+ + +++ ++ ++ F KL++ L +
Sbjct: 101 EQ--RQPSM--------MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Score = 28.3 bits (62), Expect = 6.6
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 57 YHCADCEQVFLDKFVLELHLK 77
Y D VF D FV K
Sbjct: 16 YQYKDILSVFEDAFVDNFDCK 36
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 36.5 bits (85), Expect = 5e-04
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHTAV 374
R TG K + C C SF + L H H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHL 456
T +PF C C +F HL H K H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 28.1 bits (63), Expect = 0.59
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 282 HLDIHSGEKDHCCHICKKVFLRYRNLVCHIK 312
+G K C C + F R +L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 26.5 bits (59), Expect = 1.7
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 315 HEKVRDHQCSVCGKAFADITNMKVHMRIH 343
++ QC C ++F+ ++ +H + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 316 EKVRDHQCSV--CGKAFADITNMKVHMRIHTGEK 347
K + H C + CGK + ++++ H+R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.7 bits (79), Expect = 0.002
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTGEK 347
++ + C C + FAD ++ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.8 bits (92), Expect = 0.002
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 314 VHEKVRDHQCSVCGKAFADITNMKVHMRIH 343
+QC VC ++ H+ H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.6 bits (81), Expect = 0.043
Identities = 6/51 (11%), Positives = 12/51 (23%)
Query: 405 SICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
I + ++ + C +C + L H H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.1 bits (77), Expect = 0.11
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 86 PKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
H + C +C DL H+ +
Sbjct: 176 SSGHGYQCHVCSAV-LFSPLDLDAHVASHG 204
Score = 34.1 bits (77), Expect = 0.12
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 386 KNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVH 427
+ + + C VC L H+A H
Sbjct: 162 VSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.7 bits (76), Expect = 0.16
Identities = 7/50 (14%), Positives = 10/50 (20%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVH 371
+ + Y C C A L+ H H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.1 bits (78), Expect = 0.004
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 339 HMRIHTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
GE + C C F Q L QH H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 33.7 bits (77), Expect = 0.006
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 423 HMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ + PF C C F + +L QH + H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 32.9 bits (75), Expect = 0.013
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
+CS C + F + H R H +
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTHARKS 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.005
Identities = 79/500 (15%), Positives = 164/500 (32%), Gaps = 117/500 (23%)
Query: 12 YTSRSHLSLH--------LLSHSS--DADEIKQELSCEQCGCSLDFHSALYTKDVYHCAD 61
Y++R L+L L+ +S A +++++ F+ L AD
Sbjct: 4 YSTRP-LTLSHGSLEHVLLVPTASFFIASQLQEQ-----------FNKILPEPTEGFAAD 51
Query: 62 CEQVFLDKFVLELHLK-IEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQDYHCEF-- 118
E EL K + + ++ S G F ++ L + ++ +
Sbjct: 52 DEP----TTPAELVGKFLGYVSSLVEPSK------VGQ--FDQV--LNLCLTEFENCYLE 97
Query: 119 HFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQDCSKAMSTPAPSS--ESVCIKHSN 176
D+ + A LQ+ + KEL + + + + + S+ +V ++
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKEL-IKNYITARIM-AKRPFDKKSNSALFRAVGEGNAQ 155
Query: 177 LIPKCHSC---Q-KCEESFDNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRH 232
L+ + Q ++ F+ +L+ V +L ++ L + + +
Sbjct: 156 LV----AIFGGQGNTDDYFEELRDLYQTY------HVLVGDLIKFSAETLSELIRTTLDA 205
Query: 233 MKKH-HKLQL--------SIPKAHNYFRKKTV----IHVNKKVNYKCPDCSAILLSYGGF 279
K L + + P +Y + I V + +Y + + G
Sbjct: 206 EKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGFTPGEL 263
Query: 280 TSHLDIHSGEKDHCCHICKKVFLR--------YRNLVCHIKAV-HEKVRDHQC----SVC 326
S+L G H + V + + ++ I + VR ++ S+
Sbjct: 264 RSYL---KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 327 GKAFAD-ITNMK---VHM-RIHTGEKKYVCETCGASFVQWGSLNQH---------NLVHT 372
D + N + M I + + + +V N H +LV+
Sbjct: 321 PSILEDSLENNEGVPSPMLSI-SNLTQEQVQ----DYVN--KTNSHLPAGKQVEISLVNG 373
Query: 373 AVNVVCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTTDRP 432
A N+V S G P+SL + S D F +++LK P
Sbjct: 374 AKNLVVS--GP----PQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLPVASP 426
Query: 433 FVCD-MCPSAFKLKKHLQQH 451
F + P++ + K L ++
Sbjct: 427 FHSHLLVPASDLINKDLVKN 446
Score = 33.1 bits (75), Expect = 0.24
Identities = 50/323 (15%), Positives = 86/323 (26%), Gaps = 115/323 (35%)
Query: 51 LYT-----KDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLS 105
LY +DV++ AD F D + + L I +N P + H +
Sbjct: 1635 LYKTSKAAQDVWNRAD--NHFKDTYGFSI-LDI-VINN--PVNLTI------HFGGEKGK 1682
Query: 106 DLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQD--CSKAMST- 162
+R + E D + ++I + Y + + S T
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEH---------STSYTFRSEKGLLSATQFTQ 1733
Query: 163 PAPSSESVCI----KHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKH---ENSDFVCNLC 215
PA + K LIP F H E +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPA------------------DATFAGHSLGEYAALAS--- 1772
Query: 216 PSHSKVL-----VRYVH---SAVRHMKKHHKLQLSIPK--AHNYFR----------KKTV 255
+ V+ V V ++ +L S A N R + V
Sbjct: 1773 --LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 256 IHVNKK-------VNYKCPDCSAILLSYGGFTSHLDIHSGEK---DHCCHICKKVFLRYR 305
V K+ VNY + + +G+ D ++ F++ +
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVA-------------AGDLRALDTVTNVLN--FIKLQ 1875
Query: 306 NLVCHIKAVH-------EKVRDH 321
I + E+V H
Sbjct: 1876 K----IDIIELQKSLSLEEVEGH 1894
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.4 bits (77), Expect = 0.006
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
R C VC +AFA ++K H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.8 bits (65), Expect = 0.22
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 431 RPFVCDMCPSAFKLKKHLQQHYKVH 455
R FVC++C AF ++HL++HY+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.0 bits (74), Expect = 0.035
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 376 VVCSYCGN-TYKNPKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEH-MAVHTTD 430
VC C T K L+ H+ ++ C C K+FK K L H MA H+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.4 bits (70), Expect = 0.047
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ ++P+ C +C FK K + H + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 27.2 bits (59), Expect = 1.5
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 315 HEKVRDHQCSVCGKAFADITNMKVHMRIHTG 345
+ + C VCG F M H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.047
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 344 TGEKKYVCETCGASFVQWGSLNQHNLVHTA 373
+ EK + C CG F Q+ SL +H ++H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMG 37
Score = 29.4 bits (65), Expect = 0.21
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 317 KVRDHQCSVCGKAFADITNMKVHMRIHTGEKK 348
+ + HQC CG+ F ++ H +H G+K
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 25.5 bits (55), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 287 SGEKDHCCHICKKVFLRYRNLVCH 310
S EK H C C ++F +Y +L+ H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEH 31
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 30.7 bits (70), Expect = 0.051
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 319 RDHQCSV--CGKAFADITNMKVHMRIHTGEK 347
R C+ CGK F ++ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.9 bits (69), Expect = 0.063
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 427 HTTDRPFVCDMCPSAFKLKKHLQQHYKVH 455
+ RPFVC +C SAF K + +H KVH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.5 bits (55), Expect = 5.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
+G++ +VC C ++F + +H VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 30.1 bits (67), Expect = 0.100
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGEK 347
QC +CGKAF +++ H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.8 bits (66), Expect = 0.12
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 403 QKSICDVCGKEFKMKKRLKEHMAVHTTD 430
+ +CD+CGK+FK K LK H +HT D
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.1 bits (59), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 346 EKKYVCETCGASFVQWGSLNQHNLVHTA 373
K ++C+ CG F G+L H L+HTA
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTA 34
Score = 24.8 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGE 346
+ H C +CGK F +K H +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.0 bits (77), Expect = 0.13
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 86 PKSHWFVCKMCGHRLFMRLSDLRRHMQDYH 115
+VC +C R F +S L H++ H
Sbjct: 112 VNPSSYVCNVCNAR-FSTMSALSEHLRSDH 140
Score = 30.6 bits (68), Expect = 1.2
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 321 HQCSVCGKAFADITNMKVHMR 341
+ C+VC F+ ++ + H+R
Sbjct: 117 YVCNVCNARFSTMSALSEHLR 137
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 31.9 bits (71), Expect = 0.17
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 378 CSYCGNTYKNPKSLESHI---RYAHTIRQKSICDVCGKEFKMKKRLKEHMAVHTT-DRPF 433
C C + +H ++A+ +R+ + KK + DR
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 434 VCDMCPSAFKLKKHLQQHY--KVHLKK 458
C +C F + HY K H+K
Sbjct: 95 CCPVCNMTFSSPVVAESHYIGKTHIKN 121
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.18
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 425 AVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLK 457
+ ++ F C+ C F K+L QH ++H +
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 25.9 bits (56), Expect = 3.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 343 HTGEKKYVCETCGASFVQWGSLNQHNLVHT 372
EK + C C +F L QH +HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.2 bits (54), Expect = 8.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHT 428
C+ C K F K L +H +HT
Sbjct: 15 CNKCEKTFSCSKYLTQHERIHT 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.0 bits (64), Expect = 0.22
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 318 VRDHQCSVCGKAFADITNMKVHMRIHTG 345
+R + CSVCGK F+ M+ H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.8 bits (61), Expect = 0.58
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 431 RPFVCDMCPSAFKLKKHLQQHYKVH 455
RP+ C +C F LK ++ HY+VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 25.9 bits (56), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHT 428
C VCGK F +K +++ H VHT
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHT 27
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.27
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 319 RDHQCSVCGKAFADITNMKVHMRIHTGEK 347
+ ++C C A A N+ VH+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 31.7 bits (73), Expect = 0.33
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 18/55 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKE 422
+C CG TY H + + ICD G E +K RL
Sbjct: 129 ICKTCGATY--------HTIFNPP-AVEGICDKDGGELYQRIDDKPETVKNRLDV 174
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 31.5 bits (72), Expect = 0.39
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 19/57 (33%)
Query: 377 VCSYCGNTYKNPKSLESHIRYA-HTIRQKSICDVCG----------KEFKMKKRLKE 422
+C N + + +C VCG E + KR
Sbjct: 128 ICKNNPNHP--------NNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDI 176
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 31.0 bits (71), Expect = 0.52
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 18/55 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKE 422
+CS CG TY H+ + + ICD G E + KRL+
Sbjct: 129 ICSVCGTTY--------HLVFNPP-KTPGICDKDGGELYQRADDNEETVTKRLEV 174
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.54
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 246 AHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSHLDI-HSG---EKDHCCHICKKVF 301
AH++ + Y+C C+ FT H+D H + C C +
Sbjct: 2 AHHHHHHNQQNKKVEG-GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 302 LRYRNLVCHIKAVH 315
RY L H H
Sbjct: 61 KRYDALSEHNLKYH 74
Score = 29.4 bits (65), Expect = 0.92
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Query: 334 TNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQH-NLVHTAVNV----VCSYCGNTYKNP 388
+ + + E Y C+ C H + H V + VC C K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 389 KSLESHIRYAHTIRQKSICDV 409
+L H H + +
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
Score = 29.0 bits (64), Expect = 1.2
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Query: 279 FTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHEKVR---DHQCSVCGKAFADITN 335
+ E + C C H+ + H V + C C
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 336 MKVH-MRIHTGEKKYVC 351
+ H ++ H GE+ +
Sbjct: 66 LSEHNLKYHPGEENFKL 82
Score = 28.6 bits (63), Expect = 1.5
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 304 YRNLVCHIKAVHEKVRDHQCSVCGKAFADITNMKVHMRI-HTGEKK---YVCETCGASFV 359
+ H + + ++C C D+ H+ H YVC C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 360 QWGSLNQHN 368
++ +L++HN
Sbjct: 62 RYDALSEHN 70
Score = 28.2 bits (62), Expect = 2.3
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 54 KDVYHCADCEQVFLDKFVLELHLKIEHKDNMFPKSHWFVCKMCGHRLFMRLSDLRRHMQD 113
+ Y C C D + H+ EH + + +VC C R L H
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPN--VVLNSSYVCVECNFL-TKRYDALSEHNLK 72
Query: 114 YH 115
YH
Sbjct: 73 YH 74
Score = 26.3 bits (57), Expect = 8.6
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 378 CSYCGNTYKNPKSLESHIRYAHTIRQKS---ICDVCGKEFKMKKRLKEHMA-VHTTDRPF 433
C YC + H+ H + +C C K L EH H + F
Sbjct: 21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF 80
Query: 434 VCDM 437
M
Sbjct: 81 KLTM 84
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.63
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 355
C C I R G+ VC CG
Sbjct: 24 CPECKVYPPKIVE-----RFSEGD--VVCALCG 49
Score = 30.4 bits (68), Expect = 0.84
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 160 MSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC 215
M T + + NL C E C + + D VC LC
Sbjct: 1 MMTRESIDKRAGRRGPNLNIV----LTCPE----CKVYPPKIVERFSEGDVVCALC 48
Score = 28.5 bits (63), Expect = 3.6
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 32/79 (40%)
Query: 259 NKKVNYKCPDCSAILLSYGGFTSHL--DIHSGEKDHCCHICKKVFLRYRNLVCHIKAVHE 316
N + CP+C + + G+ C +C V + +
Sbjct: 17 NLNIVLTCPEC-------KVYPPKIVERFSEGD--VVCALCGLV-------------LSD 54
Query: 317 KVRDHQCSVCG---KAFAD 332
K+ D + F++
Sbjct: 55 KLVDT-----RSEWRTFSN 68
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.3 bits (63), Expect = 0.65
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 326 CGKAFADITNMKVHMRIHTGEK 347
C K F N++ H++ H ++
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.4 bits (58), Expect = 3.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 410 CGKEFKMKKRLKEHMAVHTTDR 431
C K FK + ++ H+ H DR
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 30.6 bits (70), Expect = 0.69
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 18/55 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKE 422
G Y H++Y +Q I DV G+ +K RL
Sbjct: 134 THPASGRIY--------HVKYNPP-KQPGIDDVTGEPLVWRDDDNAEAVKVRLDV 179
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 30.6 bits (70), Expect = 0.75
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 18/55 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKE 422
+ G +Y H + ++ D+ G+ +K RL+
Sbjct: 145 IHPQSGRSY--------HEEFNPP-KEPMKDDITGEPLIRRSDDNKKALKIRLEA 190
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 30.6 bits (70), Expect = 0.88
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 18/55 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKE 422
+ G +Y H + ++ DV G+ +KKRL
Sbjct: 134 IHPASGRSY--------HKIFNPP-KEDMKDDVTGEALVQRSDDNADALKKRLAA 179
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 30.2 bits (69), Expect = 0.92
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 18/58 (31%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKEHMA 425
V + G Y H+++ + + DV G+E ++KRL E+
Sbjct: 125 VHAPSGRVY--------HVKFNPP-KVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQ 173
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 30.7 bits (70), Expect = 0.94
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 18/55 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKE 422
+ G Y H + + DV + +KKRL
Sbjct: 158 IHKPSGRIY--------HKIFNPP-KVPFRDDVTNEPLIQREDDNEDVLKKRLTV 203
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 1.3
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 5/123 (4%)
Query: 192 DNCNNLWSHMFIKHENSDFVCNLCPSHSKVLVRYVHSAVRHMKKHHKLQLSIPKAHNYFR 251
D +S + + N + +RYV + + L YFR
Sbjct: 110 DKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREE--REQNLLAFQHSERIYFR 167
Query: 252 KKTVIHVNK--KVNYKCPDCSAILLSYGGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVC 309
I + +V Y D L S T H ++ GEK ++V +L
Sbjct: 168 ACRDIRPGEWLRVWY-SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRG 226
Query: 310 HIK 312
I
Sbjct: 227 PIH 229
Score = 29.4 bits (65), Expect = 1.8
Identities = 3/53 (5%), Positives = 14/53 (26%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHYKVHLKKD 459
+ K + H + ++ + + L+ + + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 1.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 401 IRQKSICDVCGKEFKMKKRLKEHMAVHT 428
+ S C CGK F+ L EH A+H
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHA 36
Score = 26.4 bits (57), Expect = 2.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 322 QCSVCGKAFADITNMKVHMRIHTGE 346
+C CGK F + + H +H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 1.4
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 258 VNKKVNYKCPDCSAILLSY-GGFTSHLDIHSGEKDHCCHICKKVFLRYRNLVCHIKAVH 315
+ K + CP C A+ G H++ E C H C K + H+ A H
Sbjct: 29 IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHH-CGKQLRSLAGMKYHVMANH 86
Score = 28.3 bits (62), Expect = 1.7
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 347 KKYVCETCGA-SFVQWGSLNQHNLVHTAVNVVCSYCGNTYKNPKSLESHIRYAHT 400
C TC A L +H C +CG ++ ++ H+ H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 429 TDRPFVCDMCPSAFKLKKHLQQHYKVHLKK 458
T + + C C + F L+KHL QH K H K
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 29.5 bits (67), Expect = 1.9
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 18/56 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEF---------KMKKRLKEH 423
+ G Y +I + + I D+ G+ + KRLK +
Sbjct: 130 IHPASGRVY--------NIEFNPP-KTVGIDDLTGEPLIQREDDKPETVIKRLKAY 176
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 29.5 bits (67), Expect = 2.0
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 18/58 (31%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEFK---------MKKRLKEHMA 425
G TY H+++ + + DV G+ +KKRL + A
Sbjct: 133 THPASGRTY--------HVKFNPP-KVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEA 181
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 323 CSVCGKAFADITNMKVHMRIHTGEK 347
C C K F +++ H+RIHT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.2 bits (54), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 407 CDVCGKEFKMKKRLKEHMAVHTTDR 431
C+ C K FK K L+ H+ +HT ++
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 2.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 430 DRPFVCDM--CPSAFKLKKHLQQHYKVHLKK 458
DRP+ CD C AF L +H K H +K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 29.1 bits (66), Expect = 2.5
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 18/56 (32%)
Query: 377 VCSYCGNTYKNPKSLESHIRYAHTIRQKSICDVCGKEF---------KMKKRLKEH 423
+ G Y ++ + I DV G+ + RL+++
Sbjct: 150 IHPPSGRVY--------NLDFNPP-HVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 29.0 bits (64), Expect = 3.0
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 21/109 (19%)
Query: 312 KAVHEKVRDHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFVQWGSLNQHNLVH 371
AV E C CG + ++ + TG + C C +W
Sbjct: 174 GAVVETESRTLCPACG-SPPMAGMIRQGGK-ETGLRYLSCSLCAC---EW---------- 218
Query: 372 TAVNVVCSYCGNTYKNPKSLES----HIRYAHTIRQKSICDVCGKEFKM 416
V + CS+C + + S + + C C K
Sbjct: 219 HYVRIKCSHCEES--KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQ 265
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.7 bits (61), Expect = 3.7
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 28 DADEIKQELSCEQCGCSLDFHSALYTKDV-----YHCADCEQVFLDKFVLELHLK 77
D DEI +EL + +A + D+ + C C + F+D L+ H +
Sbjct: 17 DLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFR 71
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 29.0 bits (65), Expect = 3.8
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 341 RIHTGEKKYVCETCGASFVQ----WG--SLNQ-------HNLVHTAVNVVCSYCGNTYKN 387
R+ E C TCG + +G L + V+ + C CG +
Sbjct: 48 RLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKIS 107
Query: 388 PKSLESHIRYAHTIRQKSICDVCGKEFKMKKRLKEH 423
+E + R + I+++ +KK +
Sbjct: 108 EDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKA 143
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 28.1 bits (62), Expect = 5.3
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 430 DRPFVCDMCPSAF-----KLKKHLQQHYKVHLKK 458
C C F KLK HLQ+ Y L K
Sbjct: 167 QEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDK 200
>1et9_A Superantigen SPE-H; beta grAsp, OB fold, superantigen fold, immune
system; 1.90A {Streptococcus pyogenes} SCOP: b.40.2.2
d.15.6.1 PDB: 1eu4_A
Length = 204
Score = 27.8 bits (61), Expect = 6.3
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 234 KKHHKLQLSIPKAHNYFRKKTVIHVNKKVNYKCPDCSAILLSYGGFTSH 282
K+ + F+ K V C ++GG T
Sbjct: 45 DKNLSVFFEKDWISQEFKDKEVDIYALSAQEVCECPGKRYEAFGGITLT 93
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 28.3 bits (62), Expect = 7.1
Identities = 18/133 (13%), Positives = 32/133 (24%)
Query: 96 CGHRLFMRLSDLRRHMQDYHCEFHFDVESCAVSRLQDITFPCEECKELCVLSKYCIKHQD 155
C +L RR C+ V+ CEE +L +K C
Sbjct: 335 CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 394
Query: 156 CSKAMSTPAPSSESVCIKHSNLIPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC 215
+ T + + S + + + + + L
Sbjct: 395 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 454
Query: 216 PSHSKVLVRYVHS 228
+H V S
Sbjct: 455 RAHGVSSYDTVIS 467
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 27.8 bits (62), Expect = 7.4
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 11/39 (28%)
Query: 319 RDHQ-CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGA 356
R H+ C CG M E +C C
Sbjct: 105 RSHKYCGYCGHE----------MYPSKTEWAMLCSHCRE 133
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 27.5 bits (60), Expect = 8.4
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 111 MQDYHCEFHFDVESCAVSRLQDITFPCEECK-ELCVLSK---YCIKHQDCSKAMSTPAPS 166
MQ + ++V + + L L YC+ + A
Sbjct: 144 MQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQP 203
Query: 167 SESVCIK 173
SE C +
Sbjct: 204 SEKQCAR 210
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.5 bits (53), Expect = 8.6
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 433 FVCDMCPSAFKLKKHLQQHYKVHLKK 458
F C CP F HL H +H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium tumefaciens}
Length = 87
Score = 26.0 bits (57), Expect = 9.5
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 10/47 (21%)
Query: 406 ICDVCGKEFKMKKRLKEHMAVHTTDRPFVCDMCPSAFKLKKHLQQHY 452
+C CG FK KR H M P ++ K L Y
Sbjct: 23 VCLECGGSFKSLKR--HLTTHH--------SMTPEEYREKWDLPVDY 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.135 0.454
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,948,342
Number of extensions: 405149
Number of successful extensions: 3700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3204
Number of HSP's successfully gapped: 1051
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.9 bits)