BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11589
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Query: 88 IHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 147
+ EK Y C C K F R+ +L H + H + ++C CGK+F+D ++ H R HT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 148 GEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQ 206
GEK Y C CG SF+ +L H +HT + + C CG ++ L +H R +HT +
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEK 132
Query: 207 KSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL 259
C CGK F + L H HT ++P+ C C +F + L H + H
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
Y CP+C H H EK Y C C K F ++L H + H + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 127 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCG 185
CGK+F+ N++ H R HTGEK Y C CG SF+ L H +HT + + C CG
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 186 NTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 231
++ L +H R +HT + C CGK F + L H HT
Sbjct: 141 KSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 116 AVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
A+ + + C CGK+F+ ++ H R HTGEK Y C CG SF+ L H +HT
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 176 NTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDR 234
+ + C CG ++ L +H R +HT + C CGK F L+ H HT ++
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 235 PFVCNMCPSTFKLKKHLRQHYKVHL 259
P+ C C +F + +L H + H
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHT 157
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 75/166 (45%), Gaps = 5/166 (3%)
Query: 14 LCPPGSKVVVKYVHYLERHVRKH-HTMFLRLPKVHSHFRKKNAI--HVNNINKKVSYKCP 70
CP K + H E H R H + P+ F K + H + YKCP
Sbjct: 23 ACPECGKSFSRSDHLAE-HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 71 DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCG 130
+C + ++H H EK Y C C K F + +L H + H + ++C CG
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECG 140
Query: 131 KAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 176
K+F+ N+ H R HTGEK Y C CG SF+ +LNVH +HT
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 29 LERHVRKH-HTMFLRLPKVHSHFRKKNAI--HVNNINKKVSYKCPDCSVIVVSYSGFKSH 85
L RH R H + P+ F ++ + H + Y CP+C + ++H
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Query: 86 LDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRI 145
H EK Y C C K F R NL H + H + ++C CGK+F+ + VH R
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRT 183
Query: 146 HTGEK 150
HTG+K
Sbjct: 184 HTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 91 VEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 150
+EK Y C C K F ++ NL H + H + ++C CGK+F+ ++++ H R HTGEK
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 151 KYVCETCGASFALWGSLNVHSYSHTN 176
Y C CG SF+ L+ H +H N
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FV 180
+ ++C CGK+F+ +N++ H R HTGEK Y C CG SF+ L H +HT + +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 181 CSYCGNTYKNPKALTSHIR 199
C CG ++ L+ H R
Sbjct: 63 CPECGKSFSRSDHLSRHQR 81
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
+ C CG ++ L H R +HT + C CGK F L++H HT ++P+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 239 NMCPSTFKLKKHLRQHYKVH 258
C +F HL +H + H
Sbjct: 64 PECGKSFSRSDHLSRHQRTH 83
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVR 122
YKCP+C S + H H EK Y C C K F R+ +L H + H+N +
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQR-THQNKK 87
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 97 CHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
C IC K F R+ L H+ +H + R + C CGK F ++MK H IHTGEK + C+
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 157 CGASFALWGSLNVHSYSHTN 176
CG +F+ +L HS HT
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 66 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQ 125
S+ C C S +HL IH+ + Y C C K F + ++ H +H + H+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHK 59
Query: 126 CSVCGKAFADITNMKVHMRIHTG 148
C VCGKAF+ +N+ H R HTG
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
F C CG ++K L++H+ H+ + C CGK F K +K+H +HT ++P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 239 NMCPSTFKLKKHLRQHYKVH 258
+C F +L H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 152 YVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKSIC 210
+ C+ CG SF +L+ H H++T+ + C YCG + + H HT + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 211 DVCGKEFRMKRQLKEHMAVHT 231
VCGK F L H HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCS 182
H+C VCGK F+ +K HMR HTG K Y C+TC + A SLN H H++ + F C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 183 YCGNTYKNPKALTSHIRNSHT 203
C +N LT H+R SHT
Sbjct: 69 ICPYASRNSSQLTVHLR-SHT 88
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 97 CHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
C +C K F R L H++ H V+ ++C C A AD +++ H+RIH+ E+ + C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 157 CGASFALWGSLNVHSYSHTN 176
C + L VH SHT
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 181 CSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM 240
C CG + L +H+R HT + C C L +H+ +H+ +RPF C +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 241 CP----STFKLKKHLRQH 254
CP ++ +L HLR H
Sbjct: 70 CPYASRNSSQLTVHLRSH 87
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C+VCGK F K +LK HM HT +P+ C C L +H ++H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
+KC C K+H+ H K Y C C + +L H++ +H + R +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 127 SVCGKAFADITNMKVHMRIHTGE 149
+C A + + + VH+R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 40 FLRLPKVHSHFRKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHI 99
F R K+ +H R + YKC C S HL IH+ E+ + C I
Sbjct: 18 FSRKDKLKTHMRCHTGVKP--------YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 100 CKKVFLRNRNLVCHIKA 116
C + L H+++
Sbjct: 70 CPYASRNSSQLTVHLRS 86
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F + NL HI+ +H + QC +C + F+ T + H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSH 174
EK + C+ CG FA + + H+ H
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ TN+ H+RIHTG+K + C C +F+ LN H +HT +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHT 203
F C CG + T H R+ HT
Sbjct: 63 FACDICGRKF-----ATLHTRDRHT 82
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C + +H+ IH +K + C IC + F ++ L HI+ H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
C +CG+ FA + H +IH +K
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + L +HIR HT + C +C + F L +H+ HT ++PF C++C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLKME 262
F +H K+HL+ +
Sbjct: 71 KFATLHTRDRHTKIHLRQK 89
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ TN+ H+RIHTG+K + C C +F+ SLN H +HT +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHT 203
F C CG + T H R HT
Sbjct: 63 FACDICGRKF-----ATLHTRTRHT 82
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F + NL HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSH 174
EK + C+ CG FA + H+ H
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIH 85
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C + +H+ IH +K + C IC + F + +L HI+ H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
C +CG+ FA + H +IH +K
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + L +HIR HT + C +C + F + L H+ HT ++PF C++C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLKME 262
F +H K+HL+ +
Sbjct: 71 KFATLHTRTRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F R+ +L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSH 174
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C + H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLKME 262
F ++H K+HL+ +
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ ++ H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
F C CG + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT---QFVCS 182
C +CGK F D+ ++ H H+GEK Y C CG F ++ H SH + ++C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 183 YCGNTYKNPKALTSHIRNSHT 203
CG + P L HI+ H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 97 CHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGE--KKYVC 154
C IC K+F +L H K H + + C VCG F M H+R H G K Y+C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 155 ETCGASFALWGSLNVH 170
++CG F+ LN H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 173 SHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH-- 230
S ++ C CG +++ L H + SH+ + C VCG F+ K ++ H+ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 231 TTDRPFVCNMCPSTFKLKKHLRQHYK 256
+ +P++C C F HL H K
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRN-SHTI 204
+G CE CG F LN H SH+ + + C CG +K ++ H+R+ ++
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 205 HQKSICDVCGKEFRMKRQLKEHM 227
+ IC CGK F L H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C++CGK FR L H H+ ++P+ C +C FK K + H + H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 89 HNVEKEYCCHICKKVFLRNRNLVCHIKAVHENV-REHQCSVCGKAFADITNMKVHMR-IH 146
H+ EK Y C +C F R + H+++ +V + + C CGK F+ ++ H++ +H
Sbjct: 30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Query: 147 TG 148
+G
Sbjct: 90 SG 91
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHN--VEKEYCCHICKKVFLRNRNLVCHIKAVHEN 120
Y CP C + H+ H+ V K Y C C K F R +L HIK VH
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSY-- 183
CG A+ ++ H+ HTGEK + C E C F L HS +HT + F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSIC------DVCGKEFRMKRQLKEHMAVHTTDRPFV 237
C + + H H I IC + CGK F+ QLK H HT P+
Sbjct: 80 CDLRFTTKANMKKHFNRFHNI---KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 238 C--NMCPSTFKLKKHLRQHYKVH 258
C C F L L++H KVH
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVH 159
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSH 174
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLKME 262
F ++H K+HL+ +
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
F C CG + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSH 174
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C + H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLKME 262
F ++H K+HL+ +
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
F C CG + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F + NL HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSH 174
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+D +N+ H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
F C CG + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C S H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLKME 262
F ++H K+HL+ +
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 100 CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVC--ETC 157
C K+F N + H+ R H C+ CGKAF + + +K H +HTGEK + C E C
Sbjct: 13 CTKMFRDNSAMRKHLHT--HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 158 GASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKALTSHI 198
G F+L +L H HT + +VC + C + L SHI
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 31/137 (22%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNT 187
C K F D + M+ H+ H G + +VC CG +F L H HT + F C++ G
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-- 69
Query: 188 YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTF 245
CGK F + L+ H+ +HT DRP+VC + C F
Sbjct: 70 -------------------------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 246 KLKKHLRQHYKVHLKME 262
+L+ H H K +
Sbjct: 105 AQSTNLKSHILTHAKAK 121
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 69 CP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
CP C+ + S + HL H + + C C K F+ + L H + VH + QC
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQC 65
Query: 127 SV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ 178
+ CGK F+ N++ H+RIHTG++ YVC + C FA +L H +H +
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 92 EKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGE 149
E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 150 KKYVCETCGASFALWGSLNVHSYSH 174
K + C+ CG FA H+ H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 244 TFKLKKHLRQHYKVHLKM 261
F ++H K+HL+
Sbjct: 70 KFARSDERKRHTKIHLRQ 87
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 62
Query: 125 QCSVCGKAFADITNMKVHMRIH 146
C +CG+ FA K H +IH
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
F C CG + H +
Sbjct: 62 FACDICGRKFARSDERKRHTK 82
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 92 EKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGE 149
E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KKYVCETCGASFALWGSLNVHSYSH 174
K + C+ CG FA H+ H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLK 260
F ++H K+HL+
Sbjct: 71 KFARSDERKRHTKIHLR 87
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIH 146
C +CG+ FA K H +IH
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
F C CG + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 91 VEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 150
+KE+ C C + F ++ NL+ H + H + R + C +C KAF +++ H IH+ EK
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 151 KYVCETCGASFALWGSLNVHSYSHTNT 177
+ C+ CG F +L VH H T
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 173 SHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTT 232
S T +F+C +CG + L H R +HT + CD+C K FR + L++H +H+
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVHLK 260
++PF C C F + L H +H++
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 56 IHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCH 113
IH + Y C C + H IH+ EK + C C K F ++R L H
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 88 IHNVEKEYCCHICK-----KVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMK 140
IH KE+ CH + F LV H++ H + H+C+ C K+++ + N+K
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNV---HSYSHTNTQ-FVCSYCGNT--YKNPKAL 194
H+R HTGEK Y+CE G S A + + + +H+N + +VC G T Y +P +L
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 195 TSHIRNSH 202
H++ H
Sbjct: 147 RKHVKTVH 154
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 66/171 (38%), Gaps = 40/171 (23%)
Query: 100 CKKVFLRNRNLVCHIKA--VHENVREHQCSVCG-----KAFADITNMKVHMRIHTGEKKY 152
C + F LV HI + +H +E C G + F + VHMR HTGEK +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 153 VC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKSI 209
C E C S++ +L H SHT + ++C + G
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEG------------------------ 104
Query: 210 CDVCGKEFRMKRQLKEHM-AVHTTDRPFVCNM--CPSTFKLKKHLRQHYKV 257
C K F +H H+ ++P+VC + C + LR+H K
Sbjct: 105 ---CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 56 IHVNNINKKVSYKC--PDCSVIVVSYSGFKSHLDIHNVEKEYCC--HICKKVFLRNRNLV 111
+H+ + +KC C K+HL H EK Y C C K F +
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 112 CHIKAVHENVREHQCSV--CGKAFADITNMKVHMRI 145
H H N + + C + C K + D ++++ H++
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 27/131 (20%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYC 184
+C C K F +KVH R HTGEK + C CG +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY----------------------- 45
Query: 185 GNTYKNPKALTSHIRN-SHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
++ L RN + Q C VC + FR + +L+ HM HT + P+ C+ C
Sbjct: 46 ---FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102
Query: 244 TFKLKKHLRQH 254
F KK L+ H
Sbjct: 103 QFMQKKDLQSH 113
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 68 KCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH--Q 125
+CP C +S K H H EK + C C K + R NL+ H N E
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 170
CSVC + F +++HM HTGE Y C +C F L H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 20 KVVVKYVHYLERHVRKH-HTMFLRLPKVHS-HFRKKNAIH---VNNINKKVS-YKCPDCS 73
K + KY YL+ H RKH PK +FRK+N + N +N+ + C C
Sbjct: 16 KFLSKY--YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ 73
Query: 74 VIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHEN 120
+ H+ H E Y C C + F++ ++L H+ +H
Sbjct: 74 ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F ++ +L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSH 174
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
C +CG+ FA K H +IH +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + +LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVHLKME 262
F ++H K+HL+ +
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 178
R + C V C + F+ ++ H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
F C CG + H +
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT-QFVCSYC 184
C VC +++ +T+++ H IH+ EKKY C C F L H HT ++ C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 185 GNTYKNPKALTSHIRNSHT 203
G ++ N + ++SHI++ H+
Sbjct: 85 GKSFINYQFMSSHIKSVHS 103
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 61 INKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHEN 120
++ +V Y C C V + + H +IH+ EK+Y C C+KVF H + H
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTG 75
Query: 121 VREHQCSVCGKAFADITNMKVHMR 144
R +QC CGK+F + M H++
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIK 99
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
++C C +Y +L H N H+ +K C C K F + +H HT +R + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 239 NMCPSTF 245
C +F
Sbjct: 82 LACGKSF 88
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
IC VC + + L+ H +H+ ++ + C C F L ++ +H
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH 69
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 150
+K Y C C+ F NL H K VH + ++C++CG F N+K H RIH+GEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
CD C FR K L H VHT ++P+ CN+C + F +L+ H ++H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ 178
+ ++C C +F N+ H +HTGEK Y C CGA F +L H+ H+ +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRP 235
+ C C +++ L SH + HT + C++CG +F LK H +H+ ++P
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 180 VCSY--CGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRP 235
C Y CG TY L +H+R +HT + CD CG +F +L H HT RP
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 236 FVCNMCPSTFKLKKHLRQHYKVHL 259
F C C F HL H K H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRHF 90
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 127 SVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSY 183
+ CGK + +++K H+R HTGEK Y C + CG FA L H HT + F C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 184 CGNTYKNPKALTSHIR 199
C + L H++
Sbjct: 72 CDRAFSRSDHLALHMK 87
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 72 CSVIVVSYSGFKSHLDIHNVEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVC 129
C S K+HL H EK Y C C F R+ L H + H R QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 72
Query: 130 GKAFADITNMKVHMRIH 146
+AF+ ++ +HM+ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 100 CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 157
C K + ++ +L H++ H + + C CG FA + H R HTG + + C+ C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 158 GASFALWGSLNVH 170
+F+ L +H
Sbjct: 73 DRAFSRSDHLALH 85
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 180 VCSY--CGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRP 235
C Y CG TY L +H+R +HT + CD CG +F +L H HT RP
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 236 FVCNMCPSTFKLKKHLRQHYKVHL 259
F C C F HL H K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRHF 89
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 127 SVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSY 183
+ CGK + +++K H+R HTGEK Y C + CG FA L H HT + F C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 184 CGNTYKNPKALTSHIRN 200
C + L H++
Sbjct: 71 CDRAFSRSDHLALHMKR 87
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 72 CSVIVVSYSGFKSHLDIHNVEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVC 129
C S K+HL H EK Y C C F R+ L H + H R QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 71
Query: 130 GKAFADITNMKVHMRIH 146
+AF+ ++ +HM+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 100 CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 157
C K + ++ +L H++ H + + C CG FA + H R HTG + + C+ C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 158 GASFALWGSLNVH 170
+F+ L +H
Sbjct: 72 DRAFSRSDHLALH 84
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT 177
R ++C CGK+F+ +++ H R HTGEK Y C+ CG +F L H HT +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
CD CGK F L +H HT ++P+ C+ C F + HL H++VH
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 178 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRP 235
++ C CG ++ + L+ H R +HT + CD CGK F + L H VHT P
Sbjct: 18 RYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 93 KEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+ Y C C K F + +L H + H + ++C CGKAF +++ H R+HTG
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCH 113
YKC +C S H H EK Y C C K F++ +L+ H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 38/146 (26%)
Query: 100 CKKVFLRNRNLVCHIKAVHENVREHQCSVC--------GKAFADITNMKVHMRIHTGEKK 151
C + F LV H+ H E VC GK+F + H+R+HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 152 YVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKS 208
+ C CG FA +L +H +HT + F C + G
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG----------------------- 127
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDR 234
C + F K+HM VHT+D+
Sbjct: 128 ----CDRRFANSSDRKKHMHVHTSDK 149
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 181 CSYCGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRPFVC 238
C G ++K L +HIR HT + C CGK F LK H HT ++PF C
Sbjct: 65 CPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 239 NM--CPSTFKLKKHLRQHYKVH 258
C F ++H VH
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVC--------GKEFRMKRQLKEHMAVHTTDRP 235
C T+ L +H+ H + VC GK F+ K +L H+ VHT ++P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 236 FVCNM--CPSTFKLKKHLRQHYKVH 258
F C C F ++L+ H + H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTH 115
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKME 262
CGK F K Q HM++H RP+ C +C FK+K HL H K+H ++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
C VCGK+F+MK L HM +HT +P+ CN+C F + +H
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 151
+K Y C C K F H+ ++H +R + C VCGK F ++ HM+IHTG K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 152 YVCETCGASFALW 164
Y C C F +W
Sbjct: 66 YECNICAKRF-MW 77
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 85 HLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAF 133
H+ +H + Y C +C K F +LV H+K +H ++ ++C++C K F
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRF 75
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIH 205
+G+K Y C+ CG SF + H H + + C CG +K L H++ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGI 63
Query: 206 QKSICDVCGKEFRMKRQLKEHM 227
+ C++C K F + H+
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV 85
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 70 PDCSVIVVSYSGFKSHLDIHNVEKEYCC--HICKKVFLRNRNLVCHIKAVHENVREHQCS 127
P C+ + S K+HL H EK Y C C F R+ L H + H + QC
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCG 79
Query: 128 VCGKAFADITNMKVHMRIH 146
VC ++F+ ++ +HM+ H
Sbjct: 80 VCNRSFSRSDHLALHMKRH 98
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 80 SGFKSHLDIHNVEKEYCCHI-CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADI 136
S S D+ YC + C KV+ ++ +L H++ H + ++C+ C FA
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARS 60
Query: 137 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 176
+ H R HTG K + C C SF+ L +H H N
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 181 CSYCGNT--YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKR--QLKEHMAVHTTDRPF 236
C Y G T Y L +H+R +HT + C G ++R R +L H HT +PF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 237 VCNMCPSTFKLKKHLRQHYKVH 258
C +C +F HL H K H
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRH 98
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 32/134 (23%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFALWGSLNVHSYSHTNTQFVCSYCGN 186
C K + ++++++H R HTGEK Y C+ C F+ L H HT +
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF------ 67
Query: 187 TYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPST 244
C C ++F LK H HT ++PF C C
Sbjct: 68 ----------------------QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 245 FKLKKHLRQHYKVH 258
F L +H+ +H
Sbjct: 106 FARSDELVRHHNMH 119
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 100 CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 157
C K + + +L H + H + +QC C + F+ +K H R HTG K + C+TC
Sbjct: 14 CNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 158 GASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKALTSH 197
F+ L H+ +HT + F C + C + L H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 179 FVCSY--CGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDR 234
F+C+Y C Y L H R HT + CD C + F QLK H HT +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 235 PFVCNMCPSTFKLKKHLRQHYKVH 258
PF C C F HL+ H + H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 38/119 (31%), Gaps = 33/119 (27%)
Query: 56 IHVNNINKKVSYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCH 113
+H + Y+C DC K H H K + C C++ F R+ +L
Sbjct: 26 MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL--- 82
Query: 114 IKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFALWGSLNVH 170
K H R HTGEK + C +C FA L H
Sbjct: 83 --------------------------KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSIC---DVCGKEFRMKRQLKEHMAVHTTDRPFVCNM 240
CG + N + L H + H IHQKS CGK F K+ LKEHM +H+ R ++C
Sbjct: 15 CGRIFSNRQYLNHHKKYQH-IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 100 CKKVFLRNRNLVCHIKAVHENVREHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETC 157
C ++F + L H K H + + C CGK+F ++K HM++H+ + Y+CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 158 GAS 160
G S
Sbjct: 75 GPS 77
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 210 CDV--CGKEFRMKRQLKEHMAV-HTTDRPFVCN--MCPSTFKLKKHLRQHYKVH 258
CD CG+ F ++ L H H + F C C +F KKHL++H K+H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 176
+ + C CGKAF+ + + H R+HTGEK Y C CG +F+ L H HT+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 147
EK Y C C K F R+ LV H + VH + ++C CGKAF+ + + H RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C CGK F L +H VHT ++P+ C C F L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCH 113
Y C +C S H +H EK Y C C K F +N L+ H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTD 233
+ C CG + L H R HT + C CGK F L H +HT+
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 170
+CS CGK F + +H+R HTGEK Y CE C + A SL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 260
C CGK FR L H+ HT ++P+ C C K LR H + H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 181 CSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 230
CSYCG +++ L H+R +HT + C+ C K L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFA 162
QC +C + F+ ++ H+R HTGEK + C+ CG FA
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 230
F C C + LT+HIR +HT + CD+CG++F + K H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C +C + F L H+ HT ++PF C++C F ++H +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 93 KEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIH 146
K + C IC + F R+ +L HI+ H + C +CG+ FA K H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 175 TNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 230
+ F C++CG TY++ L+ H R +H ++ C CGK FR + ++ H+ VH
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 176
C+ CGK + D + + H R H G + C CG F +N H H N
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIH 146
E+ + C+ C K + L H +A H R C CGK F D + + H+++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 232 TDRPFVCNMCPSTFKLKKHLRQHYKVHL 259
++RPF CN C T++ L +H + HL
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHL 28
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R + C+VCGKAF D +N+ H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRP 235
IC VCGK F + L +H +HT ++P
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
+RP++C +C F + +L +H K+H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 121 VREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 211 DVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ C + F +L H+ +HT +PF C +C F HL H + H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 93 KEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 147
+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 61 INKKVSYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKA 116
+ K Y CP C H+ IH +K + C IC + F R+ +L HI+
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 207 KSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK 256
K IC+ CG + LK+H+ HT RP+ C C +FK K +L +H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 151 KYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRN 200
KY+CE CG L H +HT+ + + C+YC ++K LT H+++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 178 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHM 227
+++C CG K P L HIR +HT + C C F+ K L +HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ 178
C CG + +K H+R HT + Y C C SF G+L H S +++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHTNT----QFVCSYCGNTYKNPKALTSHIRNSH 202
+G CE CG + SLN H H T +F C +CG ++ P ++ +H SH
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++CSVCGKAF+ ++ VH RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C VCGK F ++ L H +H+ +P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ +QC+ CGKAF+ + + H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F +L H VHT ++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++CS+CGK+F + + VH +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C +CGK F K QL H +HT ++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
+C+VC + F + LK H HT ++P+ C +C F + L +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHS 171
C VC +AFA ++K H R HT EK Y C C +F L H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 66 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHEN 120
S+ C C+ K H H EK Y C +C + F R L+ H + +H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 152 YVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT 203
+VCE C +FA L H SHTN + + C C + L H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 95 YCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVH-MRIHTG 148
+ C +C + F R +L H ++ H N + + C +C +AF + H +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 236 FVCNMCPSTFKLKKHLRQHYKVH 258
FVC +C F ++HL++HY+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
V+ + CS CGKAF + + +HMR HTGEK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.8 bits (68), Expect = 0.83, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK FR K L HM HT ++P
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGKAF D +N+ H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C CGKAFA N+ H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK F K L +H +HT ++P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R ++CS CGKAFA + + +H RIHTGEK
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGKAF+ + + H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F +L H +HT ++P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEK 150
++C VCGK F+ ++++ H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
CDVCGKEF L+ H VHT ++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C CGKAF+ T++ H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ + CS CGKAF+ + + +HMR H+GEK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R ++CS CGKAF + + +H RIH GEK
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVH--SYSHTN---TQFVCSYCGNTYKNPKALTSHI 198
R HTGEK Y C C +F L++H Y N FVCS CG T+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 199 RN 200
N
Sbjct: 68 DN 69
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 88 IHNVEKEYCCHICKKVFLRNRNLVCHIKAVHEN---VREHQCSVCGKAFADITNMKVHMR 144
H EK Y C C K F + + L H K H+ CS CGK F M H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 145 IHTGEKKYVCETCGAS 160
G E G S
Sbjct: 69 NCAGPDGVEGENSGPS 84
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 229 VHTTDRPFVCNMCPSTFKLKKHLRQHYK 256
HT ++P+ C+ C TF+ K+ L H+K
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFK 36
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 165 GSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT---IHQKSICDVCGKEFRMK 220
GS +HT + + CS+C T++ + L H + H + +C CGK F +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 221 RQLKEHM 227
+ H
Sbjct: 61 NTMARHA 67
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 91 VEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSV 128
V K Y C C K F R +L HIK VH + R H+C V
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 209 ICDVCGKEFRMKRQLKEHM-AVHTTDRPFVCNM 240
IC CGK F L H+ VHT++RP C +
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDV 212
++C CG + P L HI+ HT + C V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.023, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R H+CS CGK F +N H RIHTGEK
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 258
CGK F+ QLK H HT P+ C C F L L++H KVH
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN----TQFVCS 182
CGKAF +KVH HT + Y C E C F+L L H H CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 183 YCGNTY 188
+ G T+
Sbjct: 69 FVGKTW 74
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 152 YVC--ETCGASFALWGSLNVHSYSHTNT-QFVCSY--CGNTYKNPKALTSH--IRNSHTI 204
YVC E CG +F L VH +SHT + C + C + P L H + +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 205 HQKSICDVCGKEFRM 219
+ C GK + +
Sbjct: 62 KKDDSCSFVGKTWTL 76
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 258
CGK F+ QLK H HT P+ C C F L L++H KVH
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN----TQFVCS 182
CGKAF +KVH HT + Y C E C F+L L H H CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 183 YCGNTY 188
+ G T+
Sbjct: 69 FVGKTW 74
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 152 YVC--ETCGASFALWGSLNVHSYSHTNT-QFVCSY--CGNTYKNPKALTSH--IRNSHTI 204
YVC E CG +F L VH +SHT + C + C + P L H + +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 205 HQKSICDVCGKEFRM 219
+ C GK + +
Sbjct: 62 KKDDSCSFVGKTWTL 76
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.024, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHTNT 177
+GEK Y C+ CG SF+ GSL VH HT +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 32.7 bits (73), Expect = 0.21, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTG 148
+ +QC CGK+F+ ++ VH R+HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 88 IHNVEKEYCCHICKKVFLRNRNLVCHIKAVH-ENVREHQCSVCGKAFADITNMKVHMR 144
H+ EK Y C+IC F ++ + HI H ENV + C C A +++ VH+R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVH---SYSHTNTQFVCSYCGNTYKNPKALTSHIRN 200
R H+GEK Y C C A F G++ +H ++ +F C +C L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 201 SHT 203
H+
Sbjct: 68 QHS 70
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R H+C+ CGK+F ++ H RIHTGEK
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
+RP CN C +F HL QH ++H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ ++CS CGK+F + + VH RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK F K QL H +HT + P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.041, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGE 149
H+C+ CGKAF+ + + +H RIHTGE
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.0 bits (79), Expect = 0.042, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 121 VREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSH 174
+R H CS CGK + +++K H R HTGEK + C + C FA L+ H +H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.4 bits (67), Expect = 0.90, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH 258
CGK + LK H HT ++PF C+ C F L +H + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ HQC CG+ F +++ H RIHTGEK
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CG+ F +K L +H +HT ++P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.048, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 152 YVCETCGASFALWGSLNVH-SYSHTNTQFVCSYCGNTYKNPKALTSHIRNSH 202
++C CG SFA G+ H H F C YC T+ + LT HI H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
+C VCG+ F K + H+ + + F C CP+TF L +H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 31.2 bits (69), Expect = 0.56, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASF 161
H C VCG++FA + H+R+ + + C+ C A+F
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
QC +CGKAF +++ H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C CGK F N+K H+RIH+GEK
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ H+C CGK+F+ + + VH RIHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCG 185
CG A+ ++ H+ HTGEK + C E C F L HS +HT + F C G
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 178 QFVCSY--CGNTYKNPKALTSHIRNSHTIHQKSIC--DVCGKEFRMKRQLKEHMAVHTTD 233
+++CS+ CG Y L +H+ + HT + C + C K F L H HT +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHL-SKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 234 RPFVCNM--CPSTFKLKKHLRQHY 255
+ F C+ C F K ++++H+
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHF 85
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 93 KEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQC--SVCGKAFADITNMKVHMRIHTG 148
K Y C C + +N L H+ + H + C C K F + ++ H HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHL-SKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 149 EKKYVCETCGASFALWGSLNV 169
EK + C++ G N+
Sbjct: 61 EKNFTCDSDGCDLRFTTKANM 81
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 258
CG + +L+ H++ HT ++PF C C F HL +H H
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
V+ + C+ CGKAF+ +++ H IHTGEK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRP 235
+C+ CGK F + L H +HT ++P
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 150 KKYVCETCGASFALWGSLNVHSYSHTN 176
K Y+C CG +F+++ SL H HT
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTG 37
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
CS CGK F TN+ +H +IHTGE+
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGER 39
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRP 235
IC CGK F K L H +HT +RP
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C+ CGKAF + + +H +IHTGEK
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK F K L H +HT ++P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ H C CGK F I+ +++H R+H GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+CS C KAF +N+ VH R HTGEK
Sbjct: 14 ECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.099, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ + C+ CGK F+ + + VH RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHTNTQF 179
+GEK Y C CG F+ L VH HT +
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKL 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.100, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C+ CGK+F+ + + H RIHTGEK
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK F + QL H +HT ++P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C VCGK FR+ L +H +VH+ +RP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P+ C +C F++ HL QH+ VH
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C VCGKAF +++ H +H+GE+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTG 148
+R + CSVCGK F+ M+ H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 234 RPFVCNMCPSTFKLKKHLRQHYKVH 258
RP+ C++C F LK + HY+VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHT 231
C VCGK F +K Q++ H VHT
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHT 27
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKK 151
+ ++C CGKAF +N+ H IHTGEK+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVHLK 260
++P+ CN+C F L HL QH +VH +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ + C+VCGKAF ++ H+R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTD 233
C+VCGK F + L +H+ VHT +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C CGKAF+D + H RIHTGEK
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ ++C+ CGKAF + + +H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK Y C CG +F L L +H +HT
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C CGKAF ++ H+RIHTGEK
Sbjct: 14 KCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK FR L H+ +HT ++P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C+ CGK+F N+ H RIHTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGKAF +N+ H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK FR L H +HT ++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C VC K+F +++ VH RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
CDVC K FR L H +HT ++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ ++CS CGKAF + + VH R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 27.3 bits (59), Expect = 9.4, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 92 EKEYCCHICKKVFLRNRNLVCH 113
EK Y C C K F+RN L+ H
Sbjct: 10 EKPYECSECGKAFIRNSQLIVH 31
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F +++ H RIHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P+ CN C F HL H+++H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
QC CGK F +++ H R+HTGEK
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F L H VHT ++P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ + C CGKAF + ++ H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F QL+EH +HT ++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ + C+ CGKAF + + +H RIHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 32.3 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHT 175
+G+K YVC CG +F L L +H HT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 234 RPFVCNMCPSTFKLKKHLRQHYKVH 258
+P+VCN C F LK L H ++H
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIH 33
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHT 231
+C+ CGK F +K QL H +HT
Sbjct: 12 VCNECGKAFGLKSQLIIHERIHT 34
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 200 NSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRP 235
+S T + CD C K FR + L H +HT ++P
Sbjct: 5 SSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHT 175
T EK + C+TC SF +LN H HT
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 231 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
T ++PF C+ C +F+ + L H +H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIH 35
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C C K+F + + H IHTGEK
Sbjct: 14 RCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C+ C K F +++ VH RIHTGEK
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++CS CGKAF + + +H + HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHTN 176
EK Y C CG +F L++H SHT
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK YVC CG +F L VH HT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTG 148
+ + CS CGKAF + + VH IHTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHT 231
+C CGK F K QL H +HT
Sbjct: 12 VCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 220 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK 256
K L+ H +H TDRPF CN C K +L +H K
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++CS CGK+F + +++H + HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ ++C+ C KAF +N+ VH R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F+ + + H +IHTGEK
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F QL +H +HT ++P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.32, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTG 148
+ ++C CGKAF+ ++ VH+R+HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHTNT 177
EK Y C+ CG +F+ GSL VH HT +
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 28.1 bits (61), Expect = 5.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
CD CGK F K L H+ VHT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK YVC+ CG +F L++H HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ + C CGKAF + + +H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ + C CGKAF + H RIHTGEK
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.39, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRP 235
+CD CGK F + +L H +HT ++P
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHT 175
EK YVC+ CG +F L L H HT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P+VC+ C F L L +H ++H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 177 TQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHM 227
+QFVC C + + +L HIR +T H K +C VC KEF +H+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIR--YTEHTK-VCPVCKKEFTSTDSALDHV 120
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHTNT 177
+G++ Y C+ CG SF GSL +H HT +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 31.2 bits (69), Expect = 0.62, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTG 148
R ++C CGK+F ++ +H RIHTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 28.1 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK FR K L H +HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGKAF+ +++ H IHTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F ++ L H A+HT +P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHTN 176
EK Y C CG +F++ SL H HT
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTG 37
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R ++C CGKAF +++ H R HTGEK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
CD+CGK F + +L H VHT ++P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHT 175
EK + C+ CG SF LN HS HT
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C +CGK+F + + H +HT EK
Sbjct: 14 KCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTG 148
+ ++CS CGKAF T++ H RIHTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK F L EH +HT RP
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C+ CGK+F +++ H RIHTGEK
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P++CN C +F K HL +H ++H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRP 235
IC+ CGK F K L H +HT ++P
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHTNTQ 178
EK Y+C CG SF LN H HT +
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 0.46, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTD 233
+CD+CGK+F+ K LK H +HT D
Sbjct: 11 LCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.52, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C CGKAF D ++ H R+HTG++
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 232 TDRPFVCNMCPSTFKLKKHLRQHYKVH 258
T + + C+ C +TF L+KHL QH K H
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTH 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C VC KAF+ ++ H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C CGK F + + H R+HTGEK
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F QL H VHT ++P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C VC KAF ++ H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P+ C +C F K HL QH K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C VC K F K L +H HT ++P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+EH+C C K F + N+K H++IH +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 234 RPFVCNMCPSTFKLKKHLRQHYKVH 258
RPFVC +C S F K + +H KVH
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C CGK + N+ +H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK + K L H VHT +RP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
QC C + F+ ++K H R HTGEK
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|3J21|II Chain i, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 83
Score = 30.8 bits (68), Expect = 0.70, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 114 IKAVHENVRE-HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFA 162
+ AV +R+ H C VCG+ K RI TG + C+ CGA+FA
Sbjct: 25 VAAVEAKMRQKHTCPVCGR--------KAVKRISTG--IWQCQKCGATFA 64
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F + + H RIHTGEK
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK FR L H +HT ++P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGE 149
H+CS C K F+ + + +H RIHTGE
Sbjct: 11 HECSECRKTFSFHSQLVIHQRIHTGE 36
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C CGK + N+ +H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C CGK + ++ H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C CGK F+ + + VH ++HTGEK
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKY 152
C +CGK F D+ ++ H H+GEK Y
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKAVHE-NVREHQCSVCGKAFADITNMKVHMRI 145
E Y C +C +V+ N H H+ NV+ + C C K F NM H++I
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 66 SYKCPDCSVIVVSYSGFKSHLDI---HNVEKEYCCHICKKVFLRNRNLVCHIKAVHE 119
+Y+C CS + S F H NV K Y C C K F R N+ H+K +H+
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNV-KVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ + C+ CGK F+ + + H R HTGEK
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 27.3 bits (59), Expect = 9.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F K L H HT ++P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F K QL H VHT +P
Sbjct: 13 CNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCS 127
EK Y C+ C K F L+ H K VH V+ S
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVH-KGVHTGVKPSGPS 42
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ + C+ CGKAF + + VH +HTG K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGE 149
++ + C+ CGKAF + + +H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTG 148
+ + C +CG F + +K H+RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C++CG FR + LK H+ +HT P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ + C+ CGKAF ++ H RIHTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 122 REHQCSVCGKAFADITNMKVHMRI-HTGEK 150
+ +QC C K FAD +N+K H++ H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
++ +QC CG++F+D T+ H+ H +K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRP 235
+C+ CGK FR L +H +H+ ++P
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C+ CGK F + + H RIH+GEK
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 231 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ +P VCN C TF+ L +H ++H
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIH 33
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGKAF +++ +H H+GEK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK FR + L H A H+ ++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
+C CGK++ ++ H R+HTGEK
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
++PF C C ++ + HL QH +VH
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK + + L +H VHT ++P
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEK 150
++H C + CGK + ++++ H+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C C A A N+ VH+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F L H +HT ++P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHTNT 177
EK Y CETCGA F L H HT +
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTG 148
+ ++C CG F + +++ H+ IHTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F L H +HT ++P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F +++ H RIHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 100 CKKVFLRNRNLVCHIKAVHENVREHQCSVC--------GKAFADITNMKVHMRIHTGEK 150
C + F LV H+ H E VC GK+F + H+R+HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGE 149
++CS CGKAF + H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C VC +AFA ++K H R HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 235 PFVCNMCPSTFKLKKHLRQHYKVH 258
FVC +C F ++HL++HY+ H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
V ++CS C K+F+ + VH R+HT EK
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F +++ H R+HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRP 235
IC CGK F ++ L +H +HT +P
Sbjct: 14 ICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C+ CGKAF +N+ H +IHT +K
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVHLKME 262
++P++C C F ++ +L +H K+H K +
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
V+ + CS C K F+ + + VH R HTG K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C C K F I ++ H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C VC +AFA +K H R HT EK
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 152 YVCETCGASFALWGSLNVHSYSHTN 176
+VCE C +FA +L H SHTN
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTN 27
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEK 150
++C CGKAF+ + H R H GEK
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 231 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
T + PF CN C TF HL +H +H
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIH 35
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C VC +AFA +K H R HT EK
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 235 PFVCNMCPSTFKLKKHLRQHYKVH 258
FVC +C F +++L++HY+ H
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSH 25
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVHLK 260
++ F CN C TF K+L QH ++H +
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ + C CGK+F + + H R+H+GEK
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK FR L +H VH+ ++P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 127 SVCGKAFADITNMKVHMRIHTGEK 150
S CGK F ++ H R HTGEK
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEK 150
+ C CGK+F+ + H R+H+GEK
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 92 EKEYCCHICKKVFLRNRNLVCH 113
EK Y CH C KVF RN +L H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARH 31
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C CGK F +++ H IHTGEK
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C CGK FR L H +HT ++P
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVH 258
+RPF CN C F + HL H ++H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R +C+ CGK F +++ H+R+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
++ + C C + FAD ++ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 233 DRPFVCNMCPSTFKLKKHLRQHYKVHLK 260
+RP+ CN C F HL +H K H +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFR 37
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 39 MFLRLPKVHSHFRKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCH 98
+F LPK+H R + A ++ IN + P+ +++S +G K D+H + H
Sbjct: 74 VFSNLPKLH-EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI------H 126
Query: 99 ICKKVFL 105
+KV L
Sbjct: 127 SLQKVLL 133
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C+ CGK F +R L H VHT ++P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 39 MFLRLPKVHSHFRKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCH 98
+F LPK+H R + A ++ IN + P+ +++S +G K D+H + H
Sbjct: 74 VFSNLPKLH-EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI------H 126
Query: 99 ICKKVFL 105
+KV L
Sbjct: 127 SLQKVLL 133
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYS 173
E Y+C CG SF GSL VH S
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRS 33
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 125 QCSV--CGKAFADITNMKVHMRIHTG 148
QC+ CGK F+ N+K H++IHTG
Sbjct: 3 QCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 124 HQCSVCGKAFADITNMKVHMR 144
H+C C + F D TN+K H R
Sbjct: 51 HRCLACARYFIDSTNLKTHFR 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.135 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,135,046
Number of Sequences: 62578
Number of extensions: 322479
Number of successful extensions: 2128
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 902
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)