RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11589
(262 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 33.5 bits (77), Expect = 0.005
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 138 NMKVHMRIHTGEKKYVCETCGASFA 162
N++ HMR HTGEK Y C CG SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 27.7 bits (62), Expect = 0.52
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 223 LKEHMAVHTTDRPFVCNMCPSTFK 246
L+ HM HT ++P+ C +C +F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 25.8 bits (57), Expect = 2.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 82 FKSHLDIHNVEKEYCCHICKKVFLR 106
+ H+ H EK Y C +C K F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 33.3 bits (76), Expect = 0.037
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 173 SHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHM 227
S + +VC C + + +L HIR +T H K +C VCGKEFR +H+
Sbjct: 68 SKAVSPYVCPLCLMPFSSSVSLKQHIR--YTEHSK-VCPVCGKEFRNTDSTLDHV 119
Score = 30.6 bits (69), Expect = 0.36
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 152 YVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTI 204
YVC C F+ SL H +T VC CG ++N + H+ H I
Sbjct: 74 YVCPLCLMPFSSSVSLKQH-IRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHNI 125
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 31.3 bits (71), Expect = 0.078
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
F C CG T AL H R +HT+ + C VC K + R+L +H +
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTLTK---CPVCNKSY---RRLNQHFYSQYDIEHLIY 55
Query: 239 NMCPSTFKLKKHLRQHYKVHLKME 262
ST+KL H+R K L++E
Sbjct: 56 CYLFSTYKLPYHVRLAIKRKLEVE 79
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 31.8 bits (73), Expect = 0.093
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 22/69 (31%)
Query: 181 CSYCGNTYKNPKALTSHIRNSH----------------------TIHQKSICDVCGKEFR 218
C +C +T + H+ SH IH+ + C CGK+F+
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHEGNECLYCGKQFK 61
Query: 219 MKRQLKEHM 227
L++HM
Sbjct: 62 SLEALRQHM 70
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 30.7 bits (70), Expect = 0.21
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 10/38 (26%)
Query: 151 KYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTY 188
K C TCG F Y VC CG
Sbjct: 9 KRTCPTCGKRF----------YDLNKDPIVCPKCGEEV 36
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 32.0 bits (72), Expect = 0.28
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 119 ENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN 176
R C C +F+ + ++ H+R HTGEK C C SF+ L+ H +H N
Sbjct: 29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHN 88
Query: 177 -TQFVCSYCGNTYKNPKALTSHIRNSHT 203
+ S + + +S +S
Sbjct: 89 NPSDLNSKSLPLSNSKASSSSLSSSSSN 116
Score = 28.9 bits (64), Expect = 3.3
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 177 TQFVCSYCGNTYKNPKALTSHIRN-SHTI--HQKSICDV--CGKEFRMKRQLKEHMAVHT 231
C ++ LT H+R+ +H+ + C CGK F LK H+ +HT
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 232 TDRPFVCNMCPSTFKLKK 249
+ P + S+ K
Sbjct: 348 SISPAKEKLLNSSSKFSP 365
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 31.3 bits (71), Expect = 0.67
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 115 KAVHENVREHQCSVCGKAFADITNMKVHMR 144
KA N + C+VC F+ + + H R
Sbjct: 65 KATPINPSSYVCNVCMAEFSSMDQLAEHQR 94
Score = 29.7 bits (67), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 189 KNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAV-HTTD 233
K T +S+ +C+VC EF QL EH H+
Sbjct: 61 PQSKKATPINPSSY------VCNVCMAEFSSMDQLAEHQRTTHSIG 100
>gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional.
Length = 578
Score = 30.7 bits (70), Expect = 0.82
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 60 NINKKVSYKCPDCSVIVVSYSGFKSH 85
NI + S K PDC+V+V + K++
Sbjct: 326 NIKARQSGKAPDCAVLVATLRALKAN 351
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 30.5 bits (68), Expect = 1.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 171 SYSHTNTQFVCSYCGNTYKNPKALTSHIRNSH 202
+S + + C C YKN L H ++SH
Sbjct: 391 IFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|224908 COG1997, RPL43A, Ribosomal protein L37AE/L43A [Translation,
ribosomal structure and biogenesis].
Length = 89
Score = 28.5 bits (64), Expect = 1.1
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFA 162
+H C CG+ RI TG + C CGA FA
Sbjct: 34 AKHVCPFCGR--------TTVKRIATG--IWKCRKCGAKFA 64
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 26.3 bits (58), Expect = 1.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 124 HQCSVCGKAFADITNMKVHMRIH 146
++C CGK F + ++ HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 210 CDVCGKEFRMKRQLKEHMAVH 230
C CGK F+ K L+EHM H
Sbjct: 3 CPECGKVFKSKSALREHMRTH 23
Score = 24.7 bits (54), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 236 FVCNMCPSTFKLKKHLRQHYKVH 258
+ C C FK K LR+H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF. A
previously described regulatory effect of HypF
mutatation is attributable to loss of activity of a
regulatory hydrogenase. A zinc finger-like region
CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported
the regulatory hypothesis. However, more recent work
(PUBMED:11375153) shows the direct effect is on the
activity of expressed hydrogenases with nickel/iron
centers, rather than on expression [Protein fate,
Protein modification and repair].
Length = 711
Score = 29.3 bits (66), Expect = 2.5
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 154 CETCGASFALWGSLNVHSYSHTNTQF----VCSYCGNTYKNPKALTSHIRNSHTIHQKSI 209
C CG F + +L Y NT +C C YK+P H Q
Sbjct: 93 CTHCGPRFTIIEAL---PYDRENTSMADFPLCPDCAKEYKDPLDRRFHA-------QPIA 142
Query: 210 CDVCGKEFRMKR 221
C CG +
Sbjct: 143 CPRCGPQLNFVS 154
>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains
DnaJ-type Zn finger domain [DNA replication,
recombination, and repair].
Length = 715
Score = 28.9 bits (65), Expect = 3.1
Identities = 27/114 (23%), Positives = 33/114 (28%), Gaps = 37/114 (32%)
Query: 111 VCHIKAVHENVREHQCSVC-GKAFADITNMKVHMRIHTG------EKKYVCETCGASFAL 163
C K V E +C VC G F+D + K + + C C
Sbjct: 7 ECGGKG-KIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCR----- 60
Query: 164 WGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEF 217
G V Y C CG T K LT CD+CG
Sbjct: 61 -GKGTVTVYDT------CPECGGT---GKVLT--------------CDICGDII 90
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 25.4 bits (56), Expect = 3.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 125 QCSVCGKAFADITNMKVHMRIH 146
+C CGK+F+ +N+K H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 4.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVH 230
C CGK F K LK H+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 28.7 bits (64), Expect = 3.5
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 17 PGSKVVVKYVHYLERHVRKHHTMFLRLPKVHSHFRKKNAIH 57
PGS++V ++ Y R+ +T + +V+ + +H
Sbjct: 293 PGSRLVRGFIEY-ASLERQPYTRYPCFQRVNLPIDGEFLVH 332
>gnl|CDD|235183 PRK03976, rpl37ae, 50S ribosomal protein L37Ae; Reviewed.
Length = 90
Score = 26.9 bits (60), Expect = 4.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 114 IKAVHENVR-EHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFA 162
+ + E +R +H C VCG+ KV R+ TG + C CGA FA
Sbjct: 26 VADIEEKMRAKHVCPVCGR-------PKVK-RVGTG--IWECRKCGAKFA 65
>gnl|CDD|218591 pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein.
This family consists of several ROS/MUCR transcriptional
regulator proteins. The ros chromosomal gene is present
in octopine and nopaline strains of Agrobacterium
tumefaciens as well as in Rhizobium meliloti. This gene
encodes a 15.5-kDa protein that specifically represses
the virC and virD operons in the virulence region of the
Ti plasmid and is necessary for succinoglycan
production. Sinorhizobium meliloti can produce two types
of acidic exopolysaccharides, succinoglycan and
galactoglucan, that are interchangeable for infection of
alfalfa nodules. MucR from Sinorhizobium meliloti acts
as a transcriptional repressor that blocks the
expression of the exp genes responsible for
galactoglucan production therefore allowing the
exclusive production of succinoglycan.
Length = 130
Score = 27.1 bits (61), Expect = 4.8
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 27/47 (57%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHY 255
IC GK+F+ LK+HLR H+
Sbjct: 72 ICLEDGKKFKT---------------------------LKRHLRTHH 91
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs),
Extracellular signal-regulated kinases 1 and 2 (ERK1/2)
and Fus3 subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed
of the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate
in transcriptional regulation of many cellular
processes. They regulate cell growth, cell
proliferation, and cell cycle progression from G1 to S
phase. Although the distinct roles of ERK1 and ERK2
have not been fully determined, it is known that ERK2
can maintain most functions in the absence of ERK1, and
that the deletion of ERK2 is embryonically lethal. The
MAPK, Fus3, regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 28.0 bits (63), Expect = 5.0
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 15 CPPGSKVVVKYVHYLERHVRKHHTMF----LRLPKVHSHFRKKNAIHVNNINKKVSY 67
P G KV +K + E H F LR K+ F+ +N I + +I + S+
Sbjct: 27 KPTGVKVAIKKISPFE------HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSF 77
>gnl|CDD|150637 pfam09986, DUF2225, Uncharacterized protein conserved in bacteria
(DUF2225). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 214
Score = 27.2 bits (61), Expect = 7.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 176 NTQFVCSYCGNTYKNPKALTSHIR 199
+ + VC C N +K K +S +R
Sbjct: 3 DKKIVCPVCNNEFKTKKVKSSGLR 26
>gnl|CDD|132760 cd07075, NR_LBD_MR, Ligand binding domain of the mineralocorticoid
receptor, a member of the nuclear receptor superfamily.
The ligand binding domain of the mineralocorticoid
receptor (MR): MR, also called aldosterone receptor, is
a member of nuclear receptor superfamily involved in the
regulation of electrolyte and fluid balance. The
receptor is activated by mineralocorticoids such as
aldosterone and deoxycorticosterone as well as
glucocorticoids, like cortisol and cortisone. Binding of
its ligand results in its translocation to the cell
nucleus, homodimerization and binding to hormone
response elements (HREs) present in the promoter of MR
controlled genes. This results in the recruitment of the
coactivators and the transcription of the activated
genes. MR is expressed in many tissues and its
activation results in the expression of proteins
regulating electrolyte and fluid balance. Like other
members of the nuclear receptor (NR) superfamily of
ligand-activated transcription factors, MR has a
central well conserved DNA binding domain (DBD), a
variable N-terminal domain, a flexible hinge and a
C-terminal ligand binding domain (LBD ). The LBD, in
addition to binding ligand, contains a ligand-dependent
activation function-2 (AF-2).
Length = 248
Score = 27.2 bits (60), Expect = 7.8
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 17/58 (29%)
Query: 157 CGASFAL-WGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVC 213
C +SFAL W SY HTN+QF+ Y P + N +HQ ++ ++C
Sbjct: 72 CLSSFALSW-----RSYKHTNSQFL-------YFAPDL----VFNEERMHQSAMYELC 113
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 27.3 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 144 RIHTGEKKYVCETCGASFA 162
R+ T +KK +CETCG
Sbjct: 47 RMGTIKKKSICETCGVEVT 65
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 25.4 bits (55), Expect = 8.0
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 95 YCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
Y C IC +++++ ++++ H++ + N++ C
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNC 37
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 27.5 bits (61), Expect = 8.5
Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 29/175 (16%)
Query: 79 YSGFKSHLDIHNVEKEYCCH-------ICKKVFLRNRNLVCH------IKAVHENVREHQ 125
+ S +D+ VE C H + + N+VC + V E
Sbjct: 396 QASSSSSMDVDTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVH 455
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT--QFVCSY 183
C CG+AF M+ HM++ + C L V + T C +
Sbjct: 456 CEKCGQAFQQ-GEMEKHMKVF-----HEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRF 509
Query: 184 CGNTYK-NPKALTSHIRNSHTIHQKSIC-------DVCGKEFRMKRQLKEHMAVH 230
CG+ + A+ R +SIC D CG+ +K +AVH
Sbjct: 510 CGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLKEMDIHQIAVH 564
>gnl|CDD|183020 PRK11180, rluD, 23S rRNA pseudouridine synthase D; Provisional.
Length = 325
Score = 27.3 bits (61), Expect = 8.5
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKME 262
HMAVH +P V + +++ +H R H ++ L++E
Sbjct: 198 HMAVHPMGKPAVTH-----YRIMEHFRVHTRLRLRLE 229
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 27.1 bits (60), Expect = 8.6
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 172 YSHTNTQFVCSYCGNTYKNPKALTSH 197
Y+ ++C YC + K+L H
Sbjct: 42 YASCTKLYICEYCLKYMRKKKSLLRH 67
>gnl|CDD|204665 pfam11494, Ta0938, Ta0938. Ta0938 is a protein of unknown function
however the structure has been determined. The protein
has a novel fold and a putative Zn-binding motif. The
structure has two different parts, one region contains a
beta sheet flanked by two alpha helices and the other
contains a bundle of loops which contain all cysteines
in the protein.
Length = 106
Score = 26.0 bits (57), Expect = 9.1
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 210 CDVCGKEF-RMKRQLKEHMAVHTTD 233
CD+C EF M ++K+ H D
Sbjct: 40 CDICALEFVNMLNEVKKRTGWHKVD 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.135 0.445
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,534,769
Number of extensions: 1101813
Number of successful extensions: 1734
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1707
Number of HSP's successfully gapped: 98
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.2 bits)