RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11589
(262 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 113 bits (285), Expect = 3e-31
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 3/180 (1%)
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 139
S + + EK Y C C K F R+ +L H + H + ++C CGK+F+D ++
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 140 KVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHI 198
H R HTGEK Y C CG SF+ +L H +HT + + C CG ++ L +H
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Query: 199 RNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
R +HT + C CGK F + L H HT ++P+ C C +F + L H + H
Sbjct: 126 R-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 93.7 bits (234), Expect = 1e-23
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 3/170 (1%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
Y CP+C H H EK Y C C K F ++L H + H + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKC 80
Query: 127 SVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCG 185
CGK+F+ N++ H R HTGEK Y C CG SF+ L H +HT + + C CG
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 186 NTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRP 235
++ L +H R +HT + C CGK F + L H HT +
Sbjct: 141 KSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 82.1 bits (204), Expect = 2e-19
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 132 AFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKN 190
+ ++ + GEK Y C CG SF+ L H +HT + + C CG ++ +
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 191 PKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKH 250
K LT H R +HT + C CGK F + L+ H HT ++P+ C C +F H
Sbjct: 62 KKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 251 LRQHYKVH 258
LR H + H
Sbjct: 121 LRAHQRTH 128
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 89.2 bits (222), Expect = 6e-22
Identities = 45/185 (24%), Positives = 64/185 (34%), Gaps = 15/185 (8%)
Query: 85 HLDIHNVEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCS--VCGKAFADITNMK 140
+ V K Y C C + +N L H H + C C K F + ++
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 141 VHMRIHTGEKKYVCE--TCGASFALWGSLNVHSYSHT---NTQFVCSY--CGNTYKNPKA 193
H HTGEK + C+ C F ++ H +VC + CG +K
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 194 LTSHIRNSHTIHQKSIC--DVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHL 251
L H SHT C + C K F + +LK H VH + C K
Sbjct: 122 LKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Query: 252 RQHYK 256
+H
Sbjct: 181 LKHVA 185
Score = 70.7 bits (174), Expect = 4e-15
Identities = 39/154 (25%), Positives = 52/154 (33%), Gaps = 21/154 (13%)
Query: 67 YKC--PDCSVIVVSYSGFKSHLDIHNVEKEYCC--HICKKVFLRNRNLVCHIKAVH--EN 120
+ C C S H H EK + C C F N+ H
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN-RFHNIK 101
Query: 121 VREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN 176
+ + C CGKAF +KVH HT + Y C E C F+L L H H
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Query: 177 TQ----FVCSYCGNTYKNPKALTSHIRNSHTIHQ 206
CS+ G K T ++++ HQ
Sbjct: 162 YPCKKDDSCSFVG------KTWTLYLKHVAECHQ 189
Score = 65.7 bits (161), Expect = 3e-13
Identities = 33/137 (24%), Positives = 46/137 (33%), Gaps = 34/137 (24%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFALWGSLNVHSYSHTNTQ-FVCSYCG 185
CG A+ ++ H+ HTGEK + C+ C F L HS +HT + F C G
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 186 NTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTT--DRPFVCNM--C 241
C F K +K+H +VC+ C
Sbjct: 80 ---------------------------CDLRFTTKANMKKHFNRFHNIKICVYVCHFENC 112
Query: 242 PSTFKLKKHLRQHYKVH 258
FK L+ H H
Sbjct: 113 GKAFKKHNQLKVHQFSH 129
Score = 61.5 bits (150), Expect = 9e-12
Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 32/122 (26%)
Query: 142 HMRIHTGEKKYVCET--CGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHI 198
+ K+Y+C CGA++ L H HT + F C G
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG------------- 49
Query: 199 RNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYK 256
C K F L H HT ++ F C+ C F K ++++H+
Sbjct: 50 --------------CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 257 VH 258
Sbjct: 96 RF 97
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 85.4 bits (212), Expect = 5e-21
Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 38/167 (22%)
Query: 84 SHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVH--------ENVREHQCSVCGKAFAD 135
S I + C + F LV H+ H +C GK+F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 136 ITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPK 192
+ H+R+HTGEK + C CG FA +L +H +HT + F C + G
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG------- 127
Query: 193 ALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C + F K+HM VHT+D+ +
Sbjct: 128 --------------------CDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 76.2 bits (188), Expect = 2e-17
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 15/130 (11%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYC---------CHICKKVFLRNRNLVCHIKAV 117
C + +H+ + +V C K F LV HI+ V
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-V 84
Query: 118 HENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFALWGSLNVHSYS 173
H + C CGK FA N+K+H R HTGEK + CE C FA H +
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Query: 174 HTNTQ-FVCS 182
HT+ + S
Sbjct: 145 HTSDKSGPSS 154
Score = 73.9 bits (182), Expect = 1e-16
Identities = 34/144 (23%), Positives = 48/144 (33%), Gaps = 15/144 (10%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT----------NTQ 178
G + I I + ++C +F+ L H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRPF 236
C G ++K L +HIR HT + C CGK F LK H HT ++PF
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 237 VCNM--CPSTFKLKKHLRQHYKVH 258
C C F ++H VH
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVH 145
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 84.6 bits (210), Expect = 1e-20
Identities = 45/180 (25%), Positives = 68/180 (37%), Gaps = 40/180 (22%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKA--VHENVREHQCSVCG-----KAFADITNMKVHMR 144
E + C + F LV HI + +H +E C G + F + VHMR
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 145 IHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNS 201
HTGEK + C E C S++ +L H SHT + ++C + G
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEG---------------- 104
Query: 202 HTIHQKSICDVCGKEFRMKRQLKEHMA-VHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH 258
C K F +H H+ ++P+VC + C + LR+H K
Sbjct: 105 -----------CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 79.6 bits (197), Expect = 1e-18
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 67 YKCPDCSVIVVSYSGFKSHLD---IHNVEKEYCCHIC-----KKVFLRNRNLVCHIKAVH 118
+ CS S H++ IH KE+ CH + F LV H++ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62
Query: 119 ENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFALWGSLNVHSY-S 173
+ H+C+ C K+++ + N+K H+R HTGEK Y+CE C +F+ H +
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 174 HTNTQ-FVCSY--CGNTYKNPKALTSHIRNSHT 203
H+N + +VC C Y +P +L H++ +
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVK-TVH 154
Score = 48.4 bits (116), Expect = 2e-07
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 67 YKCP--DCSVIVVSYSGFKSHLDIHNVEKEYCCH--ICKKVFLRNRNLVCHIKAVHENVR 122
+KC C K+HL H EK Y C C K F + H H N +
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 123 EHQCSV--CGKAFADITNMKVHMRIHTG 148
+ C + C K + D ++++ H++ G
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 82.9 bits (206), Expect = 2e-20
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 25/130 (19%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYC 184
+C C K F +KVH R HTGEK + C CG + +L H +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC--------- 59
Query: 185 GNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPST 244
+ Q C VC + FR + +L+ HM HT + P+ C+ C
Sbjct: 60 ----------------MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ 103
Query: 245 FKLKKHLRQH 254
F KK L+ H
Sbjct: 104 FMQKKDLQSH 113
Score = 79.1 bits (196), Expect = 6e-19
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCH--IKAVHENVREH 124
+CP C +S K H H EK + C C K + R NL+ H ++ + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 170
CSVC + F +++HM HTGE Y C +C F L H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 74.8 bits (185), Expect = 2e-17
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 89 HNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMR---I 145
+ C C K FL L H H + +C CGK + N+ H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 146 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT 203
+ E+ + C C +F L +H SHT + CS C + K L SH+ H+
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 53.3 bits (129), Expect = 2e-09
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 67 YKCPDCSVIVVSYSGFKSH---LDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVRE 123
++CP C H ++ E+ + C +C++ F R L H+ H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMP 94
Query: 124 HQCSVCGKAFADITNMKVHM-RIHTGEK 150
++CS C + F +++ HM ++H+G
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 76.8 bits (190), Expect = 4e-18
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 32/134 (23%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFALWGSLNVHSYSHTNTQFVCSYCGN 186
C K + ++++++H R HTGEK Y C+ C F+ L H HT +
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK-------- 65
Query: 187 TYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPST 244
++ C C ++F LK H HT ++PF C C
Sbjct: 66 PFQ--------------------CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 245 FKLKKHLRQHYKVH 258
F L +H+ +H
Sbjct: 106 FARSDELVRHHNMH 119
Score = 66.8 bits (164), Expect = 3e-14
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 92 EKEYCC--HICKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHT 147
++ + C C K + + +L H + H + +QC C + F+ +K H R HT
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 148 GEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKALTSHIR 199
G K + C+TC F+ L H+ +HT + F C + C + L H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 51.4 bits (124), Expect = 9e-09
Identities = 25/108 (23%), Positives = 32/108 (29%), Gaps = 33/108 (30%)
Query: 67 YKC--PDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREH 124
Y+C DC K H H K + C
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--------------------------- 69
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET--CGASFALWGSLNVH 170
C + F+ ++K H R HTGEK + C C FA L H
Sbjct: 70 --KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 49.4 bits (119), Expect = 4e-08
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 30/115 (26%)
Query: 147 TGEKKYVCE--TCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT 203
+ ++ ++C C + L +HS HT + + C +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD------------------ 43
Query: 204 IHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C + F QLK H HT +PF C C F HL+ H + H
Sbjct: 44 ---------CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 75.9 bits (188), Expect = 6e-18
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 139
SG +KE+ C C + F ++ NL+ H + H + R + C +C KAF ++
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHL 61
Query: 140 KVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+ H IH+ EK + C+ CG F +L VH H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 69.8 bits (172), Expect = 1e-15
Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 28/116 (24%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSY 183
C CG+ F N+ +H R HT E+ Y C+ C +F L H Y H+ +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK----- 72
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
+K C CGK F R L H +H
Sbjct: 73 ---PFK--------------------CQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 65.9 bits (162), Expect = 4e-14
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 28/118 (23%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRN 200
+K+++C+ CG F +L +H +HT+ + Y
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP--------YT----------- 47
Query: 201 SHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
CD+C K FR + L++H +H+ ++PF C C F + L H +H
Sbjct: 48 ---------CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 65.1 bits (160), Expect = 6e-14
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
+ C C H H E+ Y C IC K F R +L H + +H + +C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 127 SVCGKAFADITNMKVHMRIHTGEKKYVCET 156
CGK F + VH +H +
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 72.9 bits (180), Expect = 5e-17
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ---FV 180
C +CGK F D+ ++ H H+GEK Y C CG F ++ H SH + ++
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 181 CSYCGNTYKNPKALTSHIRNSHT 203
C CG + P L HI+ H+
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHS 90
Score = 67.9 bits (167), Expect = 5e-15
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 89 HNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+ C IC K+F +L H K H + + C VCG F M H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 149 E--KKYVCETCGASFALWGSLNVH 170
K Y+C++CG F+ LN H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGH 84
Score = 57.5 bits (140), Expect = 3e-11
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVH--ENVREH 124
C C I H H+ EK Y C +C F R + H H + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPY 66
Query: 125 QCSVCGKAFADITNMKVHM-RIHTGEK 150
C CGK F+ ++ H+ ++H+G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 57.1 bits (139), Expect = 4e-11
Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 30/113 (26%)
Query: 146 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIH 205
+G CE CG F LN H SH+ + Y
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEK--------PYS---------------- 37
Query: 206 QKSICDVCGKEFRMKRQLKEHMAVHT--TDRPFVCNMCPSTFKLKKHLRQHYK 256
C VCG F+ K ++ H+ H +P++C C F HL H K
Sbjct: 38 ----CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 46.7 bits (112), Expect = 2e-07
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C++CGK FR L H H+ ++P+ C +C FK K + H + H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 28.6 bits (65), Expect = 0.60
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ C +C F+ HL +H H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH 30
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 73.2 bits (181), Expect = 6e-17
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 89 HNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+ C +C K F R L H++ H V+ ++C C A AD +++ H+RIH+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHT 175
E+ + C+ C + L VH SHT
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 71.7 bits (177), Expect = 2e-16
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 28/115 (24%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSY 183
H+C VCGK F+ +K HMR HTG K Y C+TC + A SLN H H++ +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER----- 63
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
+K C +C R QL H+ HT D
Sbjct: 64 ---PFK--------------------CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 67.8 bits (167), Expect = 5e-15
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
+KC C K+H+ H K Y C C + +L H +H + R +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67
Query: 127 SVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C A + + + VH+R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 59.4 bits (145), Expect = 7e-12
Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 28/113 (24%)
Query: 146 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIH 205
+ CE CG F+ L H HT + YK
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK--------PYK---------------- 38
Query: 206 QKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C C L +H+ +H+ +RPF C +CP + L H + H
Sbjct: 39 ----CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 71.7 bits (177), Expect = 1e-16
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 91 VEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+E+ Y C + C + F ++ +L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHT 175
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHL 86
Score = 63.6 bits (156), Expect = 2e-13
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 28/103 (27%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTY 188
C + F+ ++ H+RIHTG+K + C C +F+ L H +HT + +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK--------PF 63
Query: 189 KNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 231
CD+CG++F + K H +H
Sbjct: 64 A--------------------CDICGRKFARSDERKRHTKIHL 86
Score = 59.8 bits (146), Expect = 4e-12
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 139
H+ IH +K + C IC + F R+ +L HI+ H + C +CG+ FA
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDER 78
Query: 140 KVHMRIHTGEK 150
K H +IH +K
Sbjct: 79 KRHTKIHLRQK 89
Score = 50.2 bits (121), Expect = 1e-08
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 184 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 243
C + +LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 244 TFKLKKHLRQHYKVH 258
F ++H K+H
Sbjct: 71 KFARSDERKRHTKIH 85
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 72.5 bits (179), Expect = 2e-16
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 31/133 (23%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNT 187
C K F D + M+ H+ H G + +VC CG +F L H HT + F C++ G
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-- 69
Query: 188 YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPSTF 245
CGK F + L+ H+ +HT DRP+VC C F
Sbjct: 70 -------------------------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 246 KLKKHLRQHYKVH 258
+L+ H H
Sbjct: 105 AQSTNLKSHILTH 117
Score = 70.2 bits (173), Expect = 1e-15
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 36/151 (23%)
Query: 92 EKEYCCHI--CKKVFLRNRNLVCHIKAVH-ENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+ C C K+F N + H+ H R H C+ CGKAF + + +K H +HTG
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLH-THGP--RVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 149 EKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIH 205
EK + C E CG F+L +L H HT + +VC +
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF---------------------- 97
Query: 206 QKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 236
D C K+F LK H+ H +
Sbjct: 98 -----DGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 58.3 bits (142), Expect = 4e-11
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREH 124
+ C +C V S K H +H EK + C C K F + NL H++ +H R +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 125 QCSV--CGKAFADITNMKVHMRIHTGEKKY 152
C C K FA TN+K H+ H K
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 69.8 bits (172), Expect = 7e-16
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFV 180
++ QC +C + F+ ++ H+R HTGEK + C+ CG FA H +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 181 CSYCGNTYKNPKALTSHIRNSHT 203
L + +
Sbjct: 61 EDKVEELLSKNYHLENEVARLKK 83
Score = 62.9 bits (154), Expect = 3e-13
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 93 KEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKY 152
K + C IC + F R+ +L HI+ H + C +CG+ FA K H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 153 VCETCGASFALWGSLNVH 170
+ + + L
Sbjct: 60 LEDKVEELLSKNYHLENE 77
Score = 54.0 bits (131), Expect = 5e-10
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQC 126
++C C +H+ H EK + C IC + F R+ H H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPILE 61
Query: 127 SVCGKAF---ADITNMKVHMRIHTGEK 150
+ + N ++ GE+
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGER 88
Score = 46.0 bits (110), Expect = 4e-07
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
F C C + LT+HIR +HT + CD+CG++F + K H + P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61
Query: 239 NMCPSTFKLKKHLRQH 254
+ HL
Sbjct: 62 DKVEELLSKNYHLENE 77
Score = 45.2 bits (108), Expect = 8e-07
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C +C + F L H+ HT ++PF C++C F ++H +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 69.8 bits (172), Expect = 1e-15
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 88 IHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 147
+ +K Y C C K F H+ +H +R + C VCGK F ++ HM+IHT
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 148 GEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTS 196
G K Y C C F S H + + T+ + + +S
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 65.9 bits (162), Expect = 4e-14
Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 32/125 (25%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCG-NT 187
CGK+F + HM +H G + Y C CG F + L H HT G
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT---------GIKP 65
Query: 188 YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKL 247
Y+ C++C K F + H V + + +
Sbjct: 66 YE--------------------CNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103
Query: 248 KKHLR 252
Sbjct: 104 ASGPS 108
Score = 64.4 bits (158), Expect = 1e-13
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 139
S H+ +H + Y C +C K F +LV H+K +H ++ ++C++C K F +
Sbjct: 23 SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF 81
Query: 140 KVHMRIHTGEKKYVCETCGASFALWGSLN 168
H + + K Y + +
Sbjct: 82 --HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 47.4 bits (114), Expect = 2e-07
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
CGK F K Q HM++H RP+ C +C FK+K HL H K+H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 68.3 bits (168), Expect = 3e-15
Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 82 FKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVH--ENVRE--HQCSVCGKAFADIT 137
S H EK Y C C K F + + L H K + N CS CGK F
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 138 NMKVHMRIHTGEKKYVCETCGASF 161
M H G E G S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 62.5 bits (153), Expect = 4e-13
Identities = 22/108 (20%), Positives = 31/108 (28%), Gaps = 24/108 (22%)
Query: 138 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSH 197
+ R HTGEK Y C C +F L++H + + FV P A
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFV----------PAAFV-- 49
Query: 198 IRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTF 245
C CGK F + + H +
Sbjct: 50 ------------CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 46.0 bits (110), Expect = 4e-07
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 194 LTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT----TDRPFVCNMCPSTFKLKK 249
S R +HT + C C K FR K+ L H + FVC+ C TF +
Sbjct: 3 SGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 250 HLRQHYKVH 258
+ +H
Sbjct: 62 TMARHADNC 70
Score = 25.6 bits (57), Expect = 7.3
Identities = 4/38 (10%), Positives = 6/38 (15%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVF 104
+ C C + H D
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 67.8 bits (167), Expect = 3e-15
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 95 YCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+ C IC K F R+ L H +H + R + C CGK F ++MK H IHTGEK + C
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 155 ETCGASFALWGSLNVHSYSHT 175
+ CG +F+ +L HS HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 60.5 bits (148), Expect = 2e-12
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 28/107 (26%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYC 184
C +CGK+F + + H+ IH+ + Y C+ CG F + H++ HT +
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK------ 56
Query: 185 GNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 231
+K C VCGK F L H HT
Sbjct: 57 --PHK--------------------CQVCGKAFSQSSNLITHSRKHT 81
Score = 57.0 bits (139), Expect = 3e-11
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 66 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQ 125
S+ C C S +HL IH+ + Y C C K F + ++ H +H + H+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK 59
Query: 126 CSVCGKAFADITNMKVHMRIHTG 148
C VCGKAF+ +N+ H R HTG
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.1 bits (121), Expect = 1e-08
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
F C CG ++K L++H+ H+ + C CGK F K +K+H +HT ++P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 239 NMCPSTFKLKKHLRQHYKVH 258
+C F +L H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 67.2 bits (165), Expect = 5e-15
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 89 HNVEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCS--VCGKAFADITNMKVHMR 144
+ C C ++F + L H K H + + C CGK+F ++K HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 145 IHTGEKKYVCETCGASF 161
+H+ + Y+CE G S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 51.8 bits (125), Expect = 3e-09
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 146 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIH 205
+G C+ G CG + N + L H + H
Sbjct: 2 SSGSSGMPCDFPG-------------------------CGRIFSNRQYLNHHKKYQHIHQ 36
Query: 206 QKSICD--VCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTF 245
+ C CGK F K+ LKEHM +H+ R ++C +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 40.6 bits (96), Expect = 3e-05
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 213 CGKEFRMKRQLKEHM-AVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVH 258
CG+ F ++ L H H + F C C +F KKHL++H K+H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 65.2 bits (160), Expect = 3e-14
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 138 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ---FVCSYCGNTYKNPKAL 194
+ R H+GEK Y C C A F G++ +H F C +C L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 195 TSHIRNSHT 203
H+R H+
Sbjct: 62 GVHLRKQHS 70
Score = 61.0 bits (149), Expect = 9e-13
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 83 KSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVH--ENVREHQCSVCGKAFADITNMK 140
S H+ EK Y C+IC F ++ + HI ENV + C C A +++
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 141 VHMR-IHTGEKKY 152
VH+R H+
Sbjct: 63 VHLRKQHSYSGPS 75
Score = 59.1 bits (144), Expect = 5e-12
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGE--KKYVCETCGASFALWGSLNVH 170
++C +C F MK+H+ E K+ C C A L VH
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 194 LTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT--TDRPFVCNMCPSTFKLKKHL 251
S R +H+ + C +C F +K H+ F C C + K L
Sbjct: 3 SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 252 RQH 254
H
Sbjct: 62 GVH 64
Score = 35.2 bits (82), Expect = 0.002
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 223 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
H+ ++P+ C +C + F ++ H
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 62.8 bits (153), Expect = 2e-13
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHT---GEKKYVCETCGASFALWGSLNVHSYSH 174
QC +CG ++ H R H ++ CE CG F S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 57.4 bits (139), Expect = 3e-11
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 146 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ----FVCSYCGNTYKNPKALTSHIRNS 201
+G CE CG + SLN H H T F C +CG ++ P ++ +H S
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 202 HTIHQKSICDVCGKEF 217
H + + G
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 53.9 bits (130), Expect = 5e-10
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTT---DRPFVCNMCPSTFKLKKHLRQHYKVH 258
C++CG R K L H H F C C F+ + H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 50.9 bits (122), Expect = 6e-09
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIK--AVHENVREHQCSVCGKAFADITNMKVHMRIHTGE 149
C IC + +L H + A C CGK F ++ H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 150 KKYVC-ETCGASFA 162
E+ G S
Sbjct: 65 LLLAPQESSGPSSG 78
Score = 28.5 bits (64), Expect = 0.44
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ C +C T + K L H + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH 30
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 62.1 bits (152), Expect = 3e-13
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
CS C + + +++H RIH ++ + C C +L+ H
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 52.5 bits (127), Expect = 1e-09
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 89 HNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+ C C L H + +H R +C+ C +N+ HM+ G
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 149 EKKY 152
+
Sbjct: 63 DMSG 66
Score = 50.6 bits (122), Expect = 6e-09
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C C K L+ H +H TDRPF CN C K +L +H K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 28/88 (31%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 203
+ C C S + +L +H H + +K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDR--------PFK-------------- 39
Query: 204 IHQKSICDVCGKEFRMKRQLKEHMAVHT 231
C+ C + + L +HM
Sbjct: 40 ------CNYCSFDTKQPSNLSKHMKKFH 61
Score = 30.2 bits (69), Expect = 0.12
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 228 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ ++ P C+ C + K LR H ++H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 60.7 bits (148), Expect = 2e-12
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 82 FKSHLDIHNVEKEYCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADIT 137
S + + C C KV+ ++ +L H++ H + ++C+ C FA
Sbjct: 3 SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSD 61
Query: 138 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 176
+ H R HTG K + C C SF+ L +H H N
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 55.7 bits (135), Expect = 2e-10
Identities = 33/114 (28%), Positives = 40/114 (35%), Gaps = 32/114 (28%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNT 177
R H C C K + +++K H+R HTGEK Y C E C FA
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA--------------- 58
Query: 178 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 231
LT H R HT + C VC + F L HM H
Sbjct: 59 ------------RSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 59.4 bits (145), Expect = 3e-12
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 81 GFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMK 140
G IH+ EK Y C C K F R+ LV H + VH + ++C CGKAF+ + +
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 141 VHMRIHTGEKKY 152
H RIHT
Sbjct: 60 NHQRIHTSGPSS 71
Score = 55.6 bits (135), Expect = 9e-11
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+ C CGKAF+ + + H R+HTGEK Y C CG +F+ L H HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 45.9 bits (110), Expect = 2e-07
Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 28/95 (29%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNS 201
IH+GEK Y C CG +F+ L H HT + YK
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK--------PYK------------ 44
Query: 202 HTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 236
C CGK F L H +HT+
Sbjct: 45 --------CLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 45.2 bits (108), Expect = 5e-07
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C CGK F L +H VHT ++P+ C C F L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 59.4 bits (145), Expect = 4e-12
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
++C C +F N+ H +HTGEK Y C CGA F +L H+ H+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 58.6 bits (143), Expect = 7e-12
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 139
H + + +K Y C C+ F NL H K VH + ++C++CG F N+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANL 61
Query: 140 KVHMRIHTGEKKY 152
K H RIH+GEK Y
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 50.1 bits (121), Expect = 8e-09
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 28/99 (28%)
Query: 138 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSH 197
+ H + +K Y C+ C ASF G+L H HT + Y+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK--------PYR-------- 47
Query: 198 IRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 236
C++CG +F LK H +H+ ++P+
Sbjct: 48 ------------CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 46.3 bits (111), Expect = 2e-07
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 194 LTSHIRNSHTIH--QKS-ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKH 250
+ H + + K CD C FR K L H VHT ++P+ CN+C + F +
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 251 LRQHYKVH 258
L+ H ++H
Sbjct: 61 LKTHTRIH 68
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 59.8 bits (144), Expect = 8e-12
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 137 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTS 196
++ K++ I TG K+ C+ C A++ L VH + + N +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 197 HIR-----NSHTIHQKSICDVCGKEFRMKRQLKEHMA 228
+ C CG F + L HM
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 47.5 bits (112), Expect = 2e-07
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 78 SYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHE----NVREHQCSVCGKAF 133
S S K + I ++ C C + L H+ N + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 134 ADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 170
++ +K C CG SF L+VH
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 37.1 bits (85), Expect = 0.001
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 66 SYKCPDCSVIVVSYSGFKSHLDI-----HNVEKEYCCHICKKVFLRNRNLVCHIKAVHEN 120
++C DCS + H++ + + + + R R+L+ + +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDA 77
Query: 121 VREHQCSVCGKAFADITNMKVHMR 144
+ +C CG +F + ++ VHM
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMI 101
Score = 28.2 bits (62), Expect = 1.4
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 222 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
K + ++ T F C C + + L H
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 57.9 bits (141), Expect = 2e-11
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 89 HNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIH 146
C K + ++ +L H++ H + + C CG FA + H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSH 174
TG + + C+ C +F+ L +H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 55.6 bits (135), Expect = 1e-10
Identities = 32/142 (22%), Positives = 41/142 (28%), Gaps = 54/142 (38%)
Query: 118 HENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT 177
+ CGK + +++K H+R HTGEK Y
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH------------------------ 37
Query: 178 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFV 237
C + G CG +F +L H HT RPF
Sbjct: 38 ---CDWDG---------------------------CGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 238 CNMCPSTFKLKKHLRQHYKVHL 259
C C F HL H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 26.7 bits (60), Expect = 3.0
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 83 KSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIK 115
H H + + C C + F R+ +L H+K
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 57.5 bits (140), Expect = 2e-11
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 139
+ Y C C K F + +L H + H + ++C CGKAF +++
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 140 KVHMRIHTGEKKY 152
H R+HTG
Sbjct: 63 IGHHRVHTGSGPS 75
Score = 55.5 bits (135), Expect = 1e-10
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
++C CGK+F+ +++ H R HTGEK Y C+ CG +F L H HT
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 45.1 bits (108), Expect = 6e-07
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 30/100 (30%)
Query: 138 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNT-YKNPKALTS 196
+ ++Y C+ CG SF+ L+ H +HT G YK
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT---------GEKPYK------- 48
Query: 197 HIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 236
CD CGK F + L H VHT P
Sbjct: 49 -------------CDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 44.0 bits (105), Expect = 2e-06
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
CD CGK F L +H HT ++P+ C+ C F + HL H++VH
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 33.2 bits (77), Expect = 0.010
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 222 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
R + C+ C +F L +H + H
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHS 171
C VC +AFA ++K H R HT EK Y C C +F L H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 93 KEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHM-RIHTGEK 150
+ + C +C + F R +L H + H N + + C +C +AF + H +IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 43.6 bits (104), Expect = 2e-06
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHY-KVH 258
C+VC + F + LK H HT ++P+ C +C F + L +H K+H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 33.2 bits (77), Expect = 0.007
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 67 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVH 118
+ C C+ K H H EK Y C +C + F R L+ H + +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.1 bits (74), Expect = 0.017
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 150 KKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT 203
+ +VCE C +FA L H SHTN + + C C + L H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 28.2 bits (64), Expect = 0.51
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 234 RPFVCNMCPSTFKLKKHLRQHYKVH 258
R FVC +C F ++HL++HY+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 54.9 bits (133), Expect = 2e-10
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 124 HQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHT-NTQ 178
+ C CGKAF +KVH HT + Y C E C F+L L H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 179 FVCSYCGNTYKNPKALTSHIRNSH 202
C K H+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 52.6 bits (127), Expect = 2e-09
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 95 YCCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEK 150
Y CH C K F ++ L H H ++C C K F+ + +K H ++H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 151 KYVCETCGASFALWGSLNVH 170
++C W H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 38.4 bits (90), Expect = 2e-04
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVH 258
CGK F+ QLK H HT P+ C C F L L++H KVH
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 31.8 bits (73), Expect = 0.034
Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 67 YKC--PDCSVIVVSYSGFKSHLDIHNVEKEYCCH--ICKKVFLRNRNLVCHIKAVHENVR 122
Y C +C ++ K H H + Y C C K F L H K VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 123 EHQCSVCGKAFADITNMKVHMR 144
+ C T H+
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVA 82
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 55.0 bits (132), Expect = 3e-10
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 88 IHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQ--------CSVCGKAFADITNM 139
I + C + F LV H+ H E C GK+F +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 140 KVHMRIHTGEKKYVC 154
H+R+HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 45.0 bits (106), Expect = 1e-06
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 178 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVC--------GKEFRMKRQLKEHMAV 229
C T+ L +H+ H + VC GK F+ K +L H+ V
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 230 HTTDRPFVC 238
HT ++
Sbjct: 85 HTGEKSGPS 93
Score = 31.5 bits (71), Expect = 0.062
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 202 HTIHQKSICDVCGKEFRMKRQLKEHM-AVHTTDRPFVCNMCP--------STFKLKKHLR 252
C + F +L H+ H ++C +FK K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 253 QHYKVH 258
H +VH
Sbjct: 80 NHIRVH 85
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.9 bits (128), Expect = 7e-10
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 88 IHNVEKEYCCHICKKVFLRNRNLVCHIK-AVHENVREHQCSVCGKAFADITNMKVHMRIH 146
E Y C +C +V+ N H + NV+ + C C K F NM H++I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 147 TG 148
Sbjct: 64 HK 65
Score = 52.9 bits (128), Expect = 8e-10
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 114 IKAVHENVREHQCSVCGKAFADITNMKVHMRI--HTGEKKYVCETCGASFALWGSLNVHS 171
++ E ++C VC + + I+N H K Y C C F ++ H
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 172 YSHT 175
Sbjct: 61 KIIH 64
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 210 CDVCGKEFRMKRQLKEHM--AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 261
C VC + + H + + + C C F K ++ H K+ K+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ---FVCSYCGNTYKNPKALTSHIRN 200
GE Y C+ C + + H + + C +C + +T+H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 201 SHTI 204
H I
Sbjct: 63 IHKI 66
Score = 27.5 bits (62), Expect = 0.90
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + C +C + + +HY
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTS 33
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 49.8 bits (120), Expect = 6e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKY 152
+ C +CG F + +K H+RIHTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 43.6 bits (104), Expect = 1e-06
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GEK Y CE CG F +L H HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 35.9 bits (84), Expect = 5e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPF 236
C++CG FR + LK H+ +HT P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 30.9 bits (71), Expect = 0.029
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P+ C +C + F+ + L+ H ++H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 49.9 bits (120), Expect = 6e-09
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 114 IKAVHENVREHQCSVCGKAFADITNMKVHM-RIHTGEKKYVCETCGASFA 162
+ + + C CGK F+ ++ H+ ++HT E+ + C+ + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 49.5 bits (119), Expect = 8e-09
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 84 SHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFAD 135
S +V K Y C C K F R +L HIK VH + R H+C V +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 40.6 bits (96), Expect = 1e-05
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 201 SHTIHQKSICDVCGKEFRMKRQLKEHM-AVHTTDRPFVCNMCPSTF 245
S ++ + IC CGK F L H+ VHT++RP C + S
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYS-HTNTQ-FVCSYCG 185
+ K Y+C++CG F+ LN H HT+ + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
Score = 29.5 bits (67), Expect = 0.14
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK-VH 258
+ + +P++C C F HL H K VH
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 48.2 bits (114), Expect = 3e-08
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+ C CG + +K H+R HT + Y C C SF G+L H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 42.4 bits (99), Expect = 3e-06
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 95 YCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 151
Y C C + L HI+ H +VR + C+ C +F N+ HM+ KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 42.0 bits (98), Expect = 5e-06
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
C+ CG + LK+H+ HT RP+ C C +FK K +L +H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 36.6 bits (84), Expect = 5e-04
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 178 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 231
+++C CG K P L HIR +HT + C C F+ K L +HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 32.0 bits (72), Expect = 0.017
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 151 KYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIR 199
KY+CE CG L H +HT+ + + C+YC ++K LT H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 48.5 bits (116), Expect = 3e-08
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 118 HENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYS 173
+R H CS CGK + +++K H R HTGEK + C + C FA L+ H +
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 174 H 174
H
Sbjct: 72 H 72
Score = 37.8 bits (88), Expect = 3e-04
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 195 TSHIRNSHTIHQKS---ICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPSTFKL 247
+S + IC CGK + LK H HT ++PF C+ C F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 248 KKHLRQHYKVH 258
L +H + H
Sbjct: 62 SDELSRHRRTH 72
Score = 30.0 bits (68), Expect = 0.11
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 140 KVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKAL 194
+ + ++C CG ++ L H+ +HT + F CS+ C + L
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 195 TSHIR 199
+ H R
Sbjct: 66 SRHRR 70
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 48.5 bits (116), Expect = 4e-08
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 129 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
C + F+ + H+RIHTG+K + C C +F+ L H +HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 43.1 bits (102), Expect = 3e-06
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 196 SHIRNSHTIHQKS-ICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLR 252
+++ N + C V C + F +L H+ +HT +PF C +C F HL
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 253 QHYKVH 258
H + H
Sbjct: 67 THIRTH 72
Score = 32.3 bits (74), Expect = 0.021
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 32/96 (33%)
Query: 138 NMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALT 195
N+ ++ + Y C E+C F+ L T
Sbjct: 8 NLLNYVV--PKMRPYACPVESCDRRFSRSDEL---------------------------T 38
Query: 196 SHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 231
HIR HT + C +C + F L H+ HT
Sbjct: 39 RHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.8 bits (65), Expect = 0.35
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 83 KSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIK 115
H+ IH +K + C IC + F R+ +L HI+
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.2 bits (112), Expect = 6e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETC 157
++ C +CGK F D+ ++ H H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.6 bits (87), Expect = 2e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMC 241
C++CGK FR L H H+ ++P+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.7 bits (69), Expect = 0.046
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 176
K+ CE CG F LN H SH+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
Score = 28.0 bits (62), Expect = 0.42
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
T + C +C F+ HL +H H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++C+ CGKAF D +N+ H +IHTGEK +
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 9e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F +L H HT
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 30.2 bits (69), Expect = 0.057
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C CGK F + L H +HT ++P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.074
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C F + +L H K+H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 46.6 bits (110), Expect = 2e-07
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 78 SYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADIT 137
S IH ++ C C +F+R L + C C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEA 53
Query: 138 NMKVHMRIHTGEKKY 152
+ +G+K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 41.2 bits (96), Expect = 1e-05
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 35/100 (35%)
Query: 137 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTS 196
+ +IH G++ C CG F
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIR--------------------------------- 30
Query: 197 HIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 236
R++ + + +C+ C K+ + L + + +
Sbjct: 31 --RSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 29.6 bits (66), Expect = 0.18
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 202 HTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
H + C CG F + + + +C C + L +
Sbjct: 13 HLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 25.0 bits (54), Expect = 7.5
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 222 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
+ +H DR C+ C F + L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
CS C KAF+ + + VH + H EK +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK + C C +F+ L VH +H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C C K F K L H H ++P +
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 30.2 bits (69), Expect = 0.057
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 228 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++PF C+ C F K +L H + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 47.2 bits (111), Expect = 2e-07
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 170 HSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAV 229
S + C C + SH R ++C C F +EH +
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEHES- 63
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQH 254
+ C C TFK + +H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 43.4 bits (101), Expect = 6e-06
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 119 ENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ 178
EN +QC +C + + H R+ VC C F H +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICD 211
C C T+K+ ++ H H + +
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 33.3 bits (75), Expect = 0.017
Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 92 EKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 151
++ Y C +C H + C C F + H KK
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAA---VCPYCSLRFFSPELKQEHES-KCEYKK 69
Query: 152 YVCETCGASFALWGSLNVH 170
C C +F S+ H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 27.9 bits (61), Expect = 1.3
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 53 KNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVC 112
+ + + K Y+C C+ + S SH + C C F
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE 60
Query: 113 HIKAVHENVREHQCSVCGKAFADITNMKVH 142
H ++ C C + F ++ H
Sbjct: 61 H--ESKCEYKKLTCLECMRTFKSSFSIWRH 88
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 115 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ + + HQC CG+ F +++ H RIHTGEK +
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 39.1 bits (92), Expect = 4e-05
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+ K + C CG F L LN H HT
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 35.6 bits (83), Expect = 9e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ ++ + C+ C F LK HL QH ++H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 32.1 bits (74), Expect = 0.013
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C CG+ F +K L +H +HT ++P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+ C+VCGKAF D +N+ H +IHTGEK
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 40.9 bits (97), Expect = 9e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGE+ Y+C CG +F +L H HT
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT 36
Score = 32.1 bits (74), Expect = 0.014
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C VCGK F + L +H +HT ++P +
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.038
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +RP++C +C F + +L +H K+H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 115 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+ E + +QCS CGK+F+ + H HT EK
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GEK Y C CG SF+ L H +HT
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F +L +H HT ++P +
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 32.9 bits (76), Expect = 0.007
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ ++P+ C+ C +F L QH+ H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+CS C KAF +N+ VH R HTGEK +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 40.9 bits (97), Expect = 9e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C C +F +L VH +HT
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT 36
Score = 31.3 bits (72), Expect = 0.024
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++PF C+ C F K +L H + H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.8 bits (68), Expect = 0.095
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C C K F K L H HT ++P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ C+VCGKAF ++ H+R+HT E +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 41.7 bits (99), Expect = 5e-06
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F L LN H HT
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 225 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN+C F L HL QH +VH
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+VCGK F + L +H+ VHT + +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C+ CGK+F+ + + H RIHTGEK +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 40.9 bits (97), Expect = 1e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C CG SF++ L H HT
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHT 36
Score = 31.7 bits (73), Expect = 0.019
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++PF C C +F + L H ++H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 30.9 bits (71), Expect = 0.032
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C CGK F + QL H +HT ++P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 4e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ CS CGKAF+ + + +HMR H+GEK +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GEK Y C CG +F+ L +H +H+
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 31.8 bits (73), Expect = 0.018
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ ++P+ C+ C F K +L H + H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 29.4 bits (67), Expect = 0.10
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C CGK F K L HM H+ ++P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 4e-07
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C+ CGKAF + + +H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 38.7 bits (91), Expect = 6e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK C CG +F L +H +H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K QL H H D+ +
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 31.4 bits (72), Expect = 0.027
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P C C F K L H + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 4e-07
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
C CGKAF+D + H RIHTGEK +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C CG +F+ LN H HT
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 30.9 bits (71), Expect = 0.029
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F L +H +HT ++P +
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.049
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++PF C C F L QH ++H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.8 bits (107), Expect = 4e-07
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
H+CS CGK F +N H RIHTGEK +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GE+ + C CG F + H HT
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 31.4 bits (72), Expect = 0.023
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 199 RNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
+S + C CGK F +H +HT ++P +
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.038
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ +R C+ C F + QH ++H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.8 bits (107), Expect = 4e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+ C+ CGKAF + + +H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 41.7 bits (99), Expect = 5e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG K YVC CG +F L +H+ +HT
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +P+VCN C F+ K +L H + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.5 bits (70), Expect = 0.048
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C+ CGK FR K L H HT +
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 4e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++C C K F I ++ H R+HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+G+K Y C+ C +F G LN H HT
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C C K F L +H VHT +R +
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + +P+ C C TF HL QH +VH
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 5e-07
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++CS CGK+F + + VH RIHTGE +
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 41.8 bits (99), Expect = 4e-06
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG SF L+VH HT
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 32.1 bits (74), Expect = 0.013
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C+ C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 31.0 bits (71), Expect = 0.030
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K QL H +HT + P +
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 5e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++CS+CGK+F + + VH +IHTGEK +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 3e-06
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG SF L+VH HT
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT 36
Score = 32.1 bits (74), Expect = 0.012
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C +CGK F K QL H +HT ++P +
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.018
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C++C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 5e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ C+ CGKAF +N+ H +IHT +K +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 41.7 bits (99), Expect = 5e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y+C CG +F + +L H HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT 36
Score = 32.5 bits (75), Expect = 0.011
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P++C C F ++ +L +H K+H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 31.3 bits (72), Expect = 0.025
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F ++ L +H +HT +P +
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 5e-07
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++CS CGKAF + + +H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F L++H SHT
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K L H HT +R +
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 30.9 bits (71), Expect = 0.037
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C+ C F K L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 5e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++CS CGKAFA + + +H RIHTGEK +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGE+ Y C CG +FA +L +H HT
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHT 36
Score = 33.2 bits (77), Expect = 0.006
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 225 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +R + C+ C F K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 31.7 bits (73), Expect = 0.016
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K L H +HT ++P +
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.4 bits (106), Expect = 5e-07
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKY 152
++C CG F + +++ H+ IHTG
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GEK Y CETCGA F L H HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P+ C C + F HLR H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.1 bits (74), Expect = 0.014
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPF 236
C+ CG F L+ H+ +HT P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 5e-07
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
CSVCGKAF+ ++ VH RIH+G+K +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F+ SL+VH H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C VCGK F ++ L H +H+ +P +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 30.6 bits (70), Expect = 0.047
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C++C F ++ L H ++H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 5e-07
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
C +CGK+F + + H +HT EK +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C+ CG SF LN HS HT
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
CD+CGK F + +L H VHT ++P +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.012
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++PF C++C +F + L +H VH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 44.4 bits (106), Expect = 5e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ CS C K F+ + + VH R HTG K +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 41.0 bits (97), Expect = 9e-06
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG K Y C C +F+L L VH SHT
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +P+ C+ C TF LK L H + H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C C K F +K QL H HT +P +
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 6e-07
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
CS CGK F TN+ +H +IHTGE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGE ++C CG F +L +H HT
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT 36
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T + PF+C+ C F K +L H K+H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 31.7 bits (73), Expect = 0.016
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K L H +HT +RP +
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 6e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++C VC KAF ++ H + HTGEK
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C+ C +F L H +HT
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT 36
Score = 32.9 bits (76), Expect = 0.008
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C +C F K HL QH K H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C VC K F K L +H HT ++P +
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 7e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ C CGKAF + ++ H RIHTGEK +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 8e-06
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y CE CG +F L H HT
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 32.1 bits (74), Expect = 0.012
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F QL+EH +HT ++P +
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.043
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C F L++H ++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 7e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
H C CGK F I+ +++H R+H GEK +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 41.4 bits (98), Expect = 7e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK + C+ CG +F +L +H H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 32.2 bits (74), Expect = 0.013
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++ C+ C F LR H +VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 29.5 bits (67), Expect = 0.12
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
CD CGK F L+ H VH ++ +
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 44.1 bits (105), Expect = 7e-07
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GEK Y C+ CG +F+ GSL VH HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 41.8 bits (99), Expect = 4e-06
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKY 152
++C CGKAF+ ++ VH+R+HTG
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 32.2 bits (74), Expect = 0.012
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
++P+ C+ C F K L H +VH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 29.8 bits (68), Expect = 0.069
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPF 236
CD CGK F K L H+ VHT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 7e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++C+ CGKAF +N+ H IHTGEK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F +L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT 36
Score = 32.5 bits (75), Expect = 0.009
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK FR L H +HT ++P +
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.036
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F+ +L H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 7e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++C VC KAF+ ++ H R+H+GEK
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 41.3 bits (98), Expect = 6e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C+ C +F+ SL H H+
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
CDVC K F L +H VH+ ++P +
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.040
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C++C F L QH +VH
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.0 bits (105), Expect = 8e-07
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C+ C KAF +N+ VH R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C C +F +L VH +HT
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 31.7 bits (73), Expect = 0.020
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F K +L H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 29.8 bits (68), Expect = 0.079
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C+ C K F K L H HT +
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 44.0 bits (105), Expect = 8e-07
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++CS CGKAF + H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 35.2 bits (82), Expect = 9e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GE Y C CG +F L H +H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 30.9 bits (71), Expect = 0.035
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C CGK F K QL H H +
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.074
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + P+ C+ C F K L H + H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 8e-07
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C VC K+F +++ VH RIHTGEK
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 6e-06
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C+ C SF SL VH HT
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
CDVC K FR L H +HT ++P +
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.041
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C++C +F+ L H ++H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 8e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++C CGK F ++ H +HTGEK +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 41.4 bits (98), Expect = 6e-06
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y CE CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT 36
Score = 32.1 bits (74), Expect = 0.013
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F +R L H VHT ++P +
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.062
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C F ++ L H+ VH
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 8e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++C CGK + N+ +H R+H GEK +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+ EK Y CE CG + +L++H H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 33.2 bits (77), Expect = 0.005
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK + + L H VH ++ +
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 31.3 bits (72), Expect = 0.022
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+ C C + + +L H +VH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 9e-07
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 158
+C CGK F + H R H+GEK G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK + CE CG F H SH+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 31.4 bits (72), Expect = 0.022
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F Q H H+ ++P +
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.034
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++PF C C F H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 46.1 bits (108), Expect = 9e-07
Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 6/125 (4%)
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 139
SG K +L H K H+ + R L K + + + + D ++
Sbjct: 8 SGSKKYLSNH---KGIFIHVTLEELKRYHQLTPEQKRLIRAIV--KTLIHNPQLLDESSY 62
Query: 140 KVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIR 199
+ ++VC C F+ SL H +T VC C + + + H+
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT-KVCPVCKKEFTSTDSALDHVC 121
Query: 200 NSHTI 204
H I
Sbjct: 122 KKHNI 126
Score = 36.8 bits (84), Expect = 0.002
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 22 VVKYVHYLERHVRKHHTMFLRLPKVHSHFRKKNAIHVNNINKKV--SYKCPDCSVIVVSY 79
+K H L ++ ++ + +++ + K + CP C + S
Sbjct: 28 ELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSS 87
Query: 80 SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVH 118
K H+ E C +CKK F + + H+ H
Sbjct: 88 VSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 35.7 bits (81), Expect = 0.004
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 145 IHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSH 202
+ +G KKY+ + L H + + + + NP+ L
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 203 TIHQKSI----CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
+ K+I C +C F LK+H+ T+ VC +C F H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDH 119
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 9e-07
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++CS CGKAF + + +H RIH GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGE+ Y C CG +F +L++H H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR 36
Score = 32.5 bits (75), Expect = 0.009
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 225 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +R + C+ C F K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.7 bits (73), Expect = 0.020
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K L H +H ++P +
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 9e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++C CGKAF D ++ H R+HTG++
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 39.9 bits (94), Expect = 2e-05
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F S H HT
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT 36
Score = 31.8 bits (73), Expect = 0.017
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F +H +HT RP +
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 30.2 bits (69), Expect = 0.070
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C F QH ++H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 9e-07
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++CS C K+F+ + VH R+HT EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
G Y C C SF+ L VH HT
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT 36
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C C K F K +L H +HT ++P +
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ P+ C+ C +F K L H ++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 9e-07
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C CGKAF +++ H R HTGEK
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 7e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG++ Y C CG +F SL H SHT
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT 36
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F+ K L H HT ++P +
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T RP+ C C FK K L H + H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
+ C CGK+F + + H R+H+GEK
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 41.8 bits (99), Expect = 4e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C+ CG SF L H H+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK FR L +H VH+ ++P +
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.032
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C +F+ L +H +VH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C+ CGK+F N+ H RIHTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 41.4 bits (98), Expect = 7e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG+K + C CG SF G+L H HT
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK FR K L H +HT ++ +
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 31.7 bits (73), Expect = 0.015
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +PF C C +F+ K +L H ++H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 1e-06
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C CGKAFA N+ H RIHTGEK
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +FA +L H HT
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 32.5 bits (75), Expect = 0.009
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C F K +L QH ++H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 32.1 bits (74), Expect = 0.011
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K L +H +HT ++P +
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 1e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C CGKAF ++ H+RIHTGEK +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 38.6 bits (91), Expect = 7e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK + C+ CG +F L H HT
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++PF C C F+ HL H ++H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 32.1 bits (74), Expect = 0.013
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK FR L H+ +HT ++P +
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
+C+ CGKAF + + +H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG K + C CG +F +L++H HT
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K L H +HT ++P +
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.015
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T + F C C F K L H K+H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
C CGKAF + H RIHTGEK
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK YVC+ CG +F L L H HT
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
CD CGK F + +L H +HT ++P +
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+VC+ C F L L +H ++H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C C F+ +++++H +H GEK
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 38.3 bits (90), Expect = 8e-05
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GEK + C C F+ SL +H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 32.9 bits (76), Expect = 0.007
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C C F L+ H VH ++P +
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.032
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ ++ + C C F LR H VH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++CS CGK+F + +++H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG SF L +H HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C+ C +F K LR H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 32.1 bits (74), Expect = 0.014
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K +L+ H HT +R +
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
H+C CGK+F+ + + VH RIHTGE
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C CG SF+ L VH HT
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT 36
Score = 31.7 bits (73), Expect = 0.018
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F QL H +HT + P +
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 31.4 bits (72), Expect = 0.025
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P C C +F L H ++H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
+ C+ CGKAF+ +++ H IHTGEK
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG K Y+C CG +F+++ SL H HT
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT 36
Score = 32.5 bits (75), Expect = 0.011
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F + L H +HT ++P +
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.062
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +P++CN C F + L H +H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C CGK + ++ H R+HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 41.0 bits (97), Expect = 8e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK Y C CG + L+ H HT
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK ++ + L H VHT ++ +
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 31.0 bits (71), Expect = 0.036
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+ C C +K + L H +VH
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C CGK + N+ +H ++HTGE+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 41.4 bits (98), Expect = 7e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y CE CG + +L++H HT
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 31.7 bits (73), Expect = 0.016
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK + K L H VHT +RP +
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 31.3 bits (72), Expect = 0.022
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C + K +L H KVH
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+QC+ CGKAF+ + + H R+HTGEK +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG K Y C CG +F+ L H HT
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 31.4 bits (72), Expect = 0.023
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +P+ CN C F L +H +VH
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 31.0 bits (71), Expect = 0.032
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F +L H VHT ++P +
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C VCGKAF +++ H +H+GE+ +
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C+ CG +F + L H H+
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C VCGK FR+ L +H +VH+ +RP +
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 31.7 bits (73), Expect = 0.019
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 225 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C +C F++ HL QH+ VH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 43.0 bits (102), Expect = 1e-06
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKY 152
+ C CGK+F ++ VH R +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 40.3 bits (95), Expect = 1e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GE Y+C CG SF GSL VH S +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 32.6 bits (75), Expect = 0.008
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 209 ICDVCGKEFRMKRQLKEHMAVHTTDRPF 236
+C CGK F + L H + P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 29.2 bits (66), Expect = 0.12
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ P++C C +F + L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
+ C+ CGK F+ + + H R HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 5e-06
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK Y C CG +F+ L+ H +HT
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+ CN C TF K L H + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 32.1 bits (74), Expect = 0.011
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F K L H HT ++P +
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C+ CGKAF +++ +H H+GEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F SL +H +H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK FR + L H A H+ ++P +
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.056
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F+ + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 115 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ R +C+ CGK F +++ H+R+H+ EK +
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 36.0 bits (84), Expect = 6e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GE+ + C CG F L H H+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + +RPF CN C F + HL H ++H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 34.0 bits (79), Expect = 0.002
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F + L H+ +H+ ++ +
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
+ C+ CGK+F +++ H RIHTGEK
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 2e-05
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y+C CG SF LN H HT
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 32.9 bits (76), Expect = 0.007
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F K L H +HT ++P +
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P++CN C +F K HL +H ++H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C CGKAF+ + H R H GEK
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGE Y C CG +F+ L H +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA 36
Score = 31.7 bits (73), Expect = 0.017
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T + P+ C+ C F K L H + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 31.3 bits (72), Expect = 0.023
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F K QL H H ++P +
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C VCGK F+ ++++ H R+HTGEK +
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 9e-06
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GEK Y C+ CG F+ L H HT
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT 36
Score = 34.0 bits (79), Expect = 0.002
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
CDVCGKEF L+ H VHT ++P +
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.015
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ ++ + C++C F HL+ H +VH
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++C CGK F +++ H IHTGEK +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 38.2 bits (90), Expect = 8e-05
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT 36
Score = 32.4 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK FR L H +HT ++P +
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 32.4 bits (75), Expect = 0.010
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C+ C F+ HL +H +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C CGK F+ + + VH ++HTGEK +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 3e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C CG F+ +LNVH HT
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT 36
Score = 32.1 bits (74), Expect = 0.012
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++PF C C F + L H+K+H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 30.2 bits (69), Expect = 0.060
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F + L H +HT ++P +
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++C+ CGKAF+ +++ H IHTG+K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 41.0 bits (97), Expect = 9e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F++ SL H HT
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F ++ L H A+HT +P +
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 31.0 bits (71), Expect = 0.029
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F ++ L H +H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C+ C K F +++ VH RIHTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
G+K + C C +F SL VH HT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 32.1 bits (74), Expect = 0.015
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ C K F L H +HT ++P +
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + F CN C TF L H ++H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+ C CGK+F+ + H R+H+GEK
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C+ CG SF+ L H H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 31.7 bits (73), Expect = 0.020
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F L +H +H+ ++P +
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.031
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++ + C C +F L +H ++H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 2e-06
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 115 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+ R + C+ CGK F +++ H++ H EK +
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 38.7 bits (91), Expect = 6e-05
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GE+ Y C CG +F L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + +RP+ CN C F HL +H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L EH+ H ++ +
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++C+ CGK F+ + + H +IHTGEK +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 39.0 bits (92), Expect = 4e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK+Y C CG F+ L+ H HT
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT 36
Score = 32.1 bits (74), Expect = 0.012
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++ + CN C F L QH K+H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F QL +H +HT ++P +
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C CGKAF+ T++ H R+HTGEK
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C+ CG +F+ L H HT
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT 36
Score = 32.1 bits (74), Expect = 0.014
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ C C F HL QH +VH
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 31.3 bits (72), Expect = 0.027
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F L +H VHT ++P +
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C+ CGK F +++ H RIHTG K +
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 38.3 bits (90), Expect = 8e-05
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 32.1 bits (74), Expect = 0.012
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F HL H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.3 bits (72), Expect = 0.021
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L H +HT +P +
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++C+ CGKAF+ + + H RIHTGEK +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG +F+ L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 31.7 bits (73), Expect = 0.021
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F +L H +HT ++P +
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.025
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 42.6 bits (101), Expect = 2e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKY 152
++C CGK+F ++ +H RIHTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+G++ Y C+ CG SF GSL +H HT
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 30.6 bits (70), Expect = 0.042
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPF 236
C CGK FR K L H +HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 30.2 bits (69), Expect = 0.063
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ R + C C +F+ K L H ++H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++CS CGKAF T++ H RIHTG +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 39.4 bits (93), Expect = 3e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK Y C CG +F LN H HT
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 31.7 bits (73), Expect = 0.017
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK F L EH +HT RP +
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 30.9 bits (71), Expect = 0.037
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+ C+ C F HL +H ++H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.6 bits (101), Expect = 3e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C+ CG +F+ SL H SH
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
Score = 41.8 bits (99), Expect = 5e-06
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
QC CG F+ ++ H+R H +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 31.8 bits (73), Expect = 0.016
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C CG F L +H+ H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 31.0 bits (71), Expect = 0.028
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++PF C C F L +H + H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 3e-06
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
++C+ CGK F + + H RIHTGEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 4e-05
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG F L+ H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK FR L H +HT ++P +
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.013
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F+ +L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C+ CGKAF + + VH R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK Y C CG +F L VH +H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA 36
Score = 31.0 bits (71), Expect = 0.033
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+ CN C F K L H + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 29.4 bits (67), Expect = 0.12
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C+ CGK F K L H H
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C CGK F + + H R+HTGEK
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK + CE CG F L+ H HT
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 32.1 bits (74), Expect = 0.015
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++PF C C F L H +VH
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 32.1 bits (74), Expect = 0.015
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F QL H VHT ++P +
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
++C CGK F+ + H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 35.9 bits (84), Expect = 5e-04
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGE Y C CG F+ L H +H+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 31.3 bits (72), Expect = 0.021
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T + P+ C C F K L H K H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 30.9 bits (71), Expect = 0.037
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C CGK F K QL H H+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
QC CGK F +++ H R+HTGEK +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 39.1 bits (92), Expect = 5e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK + CE CG F L+ H HT
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 32.9 bits (76), Expect = 0.006
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 225 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++PF C C F HL H +VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 31.7 bits (73), Expect = 0.018
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L H VHT ++P +
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 4e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C CGK++ ++ H R+HTGEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 9e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK + C CG S+ L H HT
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++PF C C ++ + HL QH +VH
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 32.5 bits (75), Expect = 0.010
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C CGK + + L +H VHT ++P +
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C+ CGK F +++ H IHTGEK +
Sbjct: 14 KCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 38.2 bits (90), Expect = 9e-05
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT 36
Score = 31.3 bits (72), Expect = 0.026
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 30.9 bits (71), Expect = 0.030
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 4e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
H+C+ CGK+F ++ H RIHTGEK
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 5e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGE+ + C CG SF L H HT
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT 36
Score = 32.9 bits (76), Expect = 0.008
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +RP CN C +F HL QH ++H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 31.7 bits (73), Expect = 0.021
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L +H +HT ++P +
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 5e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+C+ CGK F +++ H RIHTGEK
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 7e-05
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK Y C CG F L H HT
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 31.7 bits (73), Expect = 0.020
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.026
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+ CN C F HL H+++H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 6e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
+C+ CGK F +++ H IHTGEK +
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 31.3 bits (72), Expect = 0.025
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 31.3 bits (72), Expect = 0.026
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 6e-06
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 156
++C+ CGK F +++ H R+HTG K +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 31.3 bits (72), Expect = 0.027
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T ++P+ CN C F HL +H +VH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 31.3 bits (72), Expect = 0.027
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L H VHT +P +
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 7e-06
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCE 155
+C+ CGK F +++ H IHTGEK
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 4e-05
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 141 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
TG+K Y C CG F L H HT
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 31.3 bits (72), Expect = 0.028
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T +P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.9 bits (71), Expect = 0.035
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 239
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 39.6 bits (93), Expect = 3e-05
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 117 VHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET 156
+ C+ CG F+ + H R H+G K +
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 38.1 bits (89), Expect = 9e-05
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 142 HMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCS 182
TGEK + C CG F+ L+ H SH+ + S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 32.3 bits (74), Expect = 0.012
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 196 SHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCN 239
S S T + C CG F +L H H+ +P +
Sbjct: 2 SSGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 39.1 bits (92), Expect = 5e-05
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 124 HQCSVCGKAFADITNMKVHMR-IHTGEKKYVC 154
++C CGKAF T++ H R HTGEK
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVH 170
TG+K Y C CG +F SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 28.7 bits (65), Expect = 0.21
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 210 CDVCGKEFRMKRQLKEHM-AVHTTDRPFVCN 239
C CGK F L H HT ++P +
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 28.3 bits (64), Expect = 0.26
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQH 254
+ T +P+ C C F L +H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.3 bits (90), Expect = 7e-05
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
T K Y C CG +F L H HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 36.8 bits (86), Expect = 3e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+ C+ CGKAF I ++ H +IHT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.0 bits (84), Expect = 5e-04
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 225 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ T + + CN C F HL +H K+H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.8 bits (83), Expect = 6e-04
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 124 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 154
+ C+ C + F+D + H ++HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 34.6 bits (80), Expect = 0.002
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 228 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + ++P+ C C TF L QH K+H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 33.5 bits (77), Expect = 0.005
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 144 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
+GEK Y C C +F+ L H HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 25.7 bits (57), Expect = 2.0
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 238
C C + F +L +H +HT
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.7 bits (79), Expect = 0.001
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTGEK 150
++ + C C + FAD ++ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.9 bits (51), Expect = 9.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 179 FVCSYCGNTYKNPKALTSHIR 199
+VC +C + +P AL H+R
Sbjct: 4 YVCIHCQRQFADPGALQRHVR 24
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.1 bits (90), Expect = 0.001
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 117 VHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 176
+ +QC VC ++ H+ H +L
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH-------------GLHGNMTLTSSEIQRHI 220
Query: 177 TQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSI 209
T+F+ S+ + A + + + +H +
Sbjct: 221 TEFISSWQNHPIVQVSADVENKKTAQLLHADTP 253
Score = 34.1 bits (77), Expect = 0.050
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 177 TQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 230
+ + A + + H C VC L H+A H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHG-YQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.3 bits (75), Expect = 0.089
Identities = 9/65 (13%), Positives = 13/65 (20%), Gaps = 2/65 (3%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSH--TNTQFVCS 182
+ + Y C C A L+ H SH + S
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
Query: 183 YCGNT 187
Sbjct: 214 SEIQR 218
Score = 32.9 bits (74), Expect = 0.13
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 208 SICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTF----KLKKHLRQH 254
I + ++ + C++C + L H+ H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.4 bits (70), Expect = 0.33
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 171 SYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 203
+ + + C C +P L +H+ +
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 261
T +PF C C +F HL H K H+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSH 174
R TG K + C C SF+ L +H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 0.38
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 118 HENVREHQCSVCGKAFADITNMKVHMRIH 146
++ QC C ++F+ ++ +H + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 2.3
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 85 HLDIHNVEKEYCCHICKKVFLRNRNLVCHIK 115
K + C C + F R+ +L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.1 bits (78), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 226 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ + PF C+ C F + +L QH + H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 33.3 bits (76), Expect = 0.006
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 115 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ +CS C + F + H R H +
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 29.4 bits (66), Expect = 0.12
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 142 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 175
GE + C C F L H +H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 26.0 bits (57), Expect = 2.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 84 SHLDIHNVEKEYCCHICKKVFLRNRNLVCH 113
S E + C C +VF + LV H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 24.8 bits (54), Expect = 5.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRP 235
C C + F + L +H H
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.9 bits (78), Expect = 0.003
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEK 150
++H C + CGK + ++++ H+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.1 bits (76), Expect = 0.004
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
R C VC +AFA ++K H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.1 bits (63), Expect = 0.27
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 234 RPFVCNMCPSTFKLKKHLRQHYKVH 258
R FVC +C F ++HL++HY+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.8 bits (76), Expect = 0.011
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 174 HTNTQFVCSYCGN-TYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEH-MAVHT 231
H + VC C T K L H+ + C C K+F+ K L H MA H+
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 232 TD 233
Sbjct: 80 AK 81
Score = 33.4 bits (75), Expect = 0.015
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 61 INKKVSYKCPDCSVIVV-SYSGFKSHLDI-HNVEKEYCCHICKKVFLRNRNLVCHIKAVH 118
I+++ CP C+V+ + G K H+++ ++ C C+K F L H A H
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Query: 119 EN 120
Sbjct: 79 SA 80
Score = 28.4 bits (62), Expect = 0.99
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 93 KEYCCHICKKVFLRN-RNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMR 144
E C C V + L H++ + +C C K F + H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.6 bits (76), Expect = 0.012
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 77 VSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVRE---HQCSVCGKAF 133
+++ + VE Y C C H+ + H NV + C C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 134 ADITNMKVH-MRIHTGEKKYVC 154
+ H ++ H GE+ +
Sbjct: 61 KRYDALSEHNLKYHPGEENFKL 82
Score = 32.4 bits (73), Expect = 0.033
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 137 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYS-----HTNTQFVCSYCGNTYKNP 191
+ + + E Y C+ C H S N+ +VC C K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 192 KALTSHIRNSHTIHQKSICDV 212
AL+ H H + +
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
Score = 30.9 bits (69), Expect = 0.13
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 47 HSHFRKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIH----NVEKEYCCHICKK 102
H H + Y+C C+ + F H+D + Y C C
Sbjct: 3 HHHHHHNQQNKKV----EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNF 58
Query: 103 VFLRNRNLVCHIKAVH 118
+ R L H H
Sbjct: 59 LTKRYDALSEHNLKYH 74
Score = 28.6 bits (63), Expect = 0.78
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSHTIHQKS---ICDVCGKEFRMKRQLKEHMA-VHTTDR 234
+ C YC + T H+ + H + +C C + L EH H +
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
Query: 235 PFVCNM 240
F M
Sbjct: 79 NFKLTM 84
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.0 bits (80), Expect = 0.014
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 8/41 (19%)
Query: 119 ENVREHQ-CSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 158
N+ C C I R G+ VC CG
Sbjct: 16 PNLNIVLTCPECKVYPPKIVE-----RFSEGD--VVCALCG 49
Score = 30.8 bits (69), Expect = 0.30
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 19/58 (32%)
Query: 51 RKKNAIHVNNINKKVSYKCPDC----SVIVVSY-SGFKSHLDIHNVEKEYCCHICKKV 103
K+ N+N + CP+C IV + G + C +C V
Sbjct: 8 DKRAGRRGPNLNIVL--TCPECKVYPPKIVERFSEG------------DVVCALCGLV 51
Score = 26.9 bits (59), Expect = 5.0
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 8/38 (21%)
Query: 149 EKKYVCETCGASFALWGSLN-VHSYSHTNTQFVCSYCG 185
C C V +S + VC+ CG
Sbjct: 19 NIVLTCPECKVY-----PPKIVERFSEGDV--VCALCG 49
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 35.6 bits (81), Expect = 0.016
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 175 TNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKS 208
+ +VC+ C + AL+ H+R+ H +
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHRDDAST 146
Score = 31.3 bits (70), Expect = 0.33
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 120 NVREHQCSVCGKAFADITNMKVHMR 144
N + C+VC F+ ++ + H+R
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLR 137
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.0 bits (71), Expect = 0.023
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 122 REHQCSV--CGKAFADITNMKVHMRIHTGEK 150
R C+ CGK F ++ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.028
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 228 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 260
+ ++ F CN C TF K+L QH ++H +
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 24.4 bits (52), Expect = 8.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHT 231
C+ C K F + L +H +HT
Sbjct: 15 CNKCEKTFSCSKYLTQHERIHT 36
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.4 bits (70), Expect = 0.029
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ ++P+ C +C FK K + H + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.8 bits (58), Expect = 1.00
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 118 HENVREHQCSVCGKAFADITNMKVHMRIHTG 148
+ + C VCG F M H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.6 bits (55), Expect = 2.6
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 89 HNVEKEYCCHICKKVFLRNRNLVCHIKAVHENVRE 123
+ EK Y C +C F R + H+++ +V +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 30.9 bits (69), Expect = 0.031
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGEK 150
QC +CGKAF +++ H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.1 bits (72), Expect = 0.035
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 61 INKKVSYKCPDCSVIVVSY-SGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIKAVH 118
I K S CP C + G K H++ E C H C K + H+ A H
Sbjct: 29 IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHH-CGKQLRSLAGMKYHVMANH 86
Score = 28.7 bits (63), Expect = 0.64
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 150 KKYVCETCGA-SFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 203
C TC A L H + F C +CG ++ + H+ +H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.065
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 200 NSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTD 233
+S + + +CD+CGK+F+ K LK H +HT D
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.2 bits (54), Expect = 3.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGE 149
+ H C +CGK F +K H +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 24.8 bits (53), Expect = 4.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 149 EKKYVCETCGASFALWGSLNVHSYSHT 175
K ++C+ CG F G+L H HT
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHT 33
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.11
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEK 150
+ ++C C A A N+ VH+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (65), Expect = 0.12
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 122 REHQCSVCGKAFADITNMKVHMRIHTGEKK 151
+ HQC CG+ F ++ H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 24.8 bits (53), Expect = 5.7
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 147 TGEKKYVCETCGASFALWGSLNVHSYSHT 175
+ EK + C CG F + SL H H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.0 bits (64), Expect = 0.15
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 230 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ RPFVC +C S F K + +H KVH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.1 bits (54), Expect = 4.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 118 HENVREHQCSVCGKAFADITNMKVHMRIHT 147
R C +C AF N H+++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.1 bits (54), Expect = 4.1
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 146 HTGEKKYVCETCGASFALWGSLNVHSYSHTNT 177
+G++ +VC C ++F + H HT+T
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.1 bits (64), Expect = 0.18
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 200 NSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 231
+S S C CGK FR L EH A+H
Sbjct: 5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHA 36
Score = 26.8 bits (58), Expect = 1.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 125 QCSVCGKAFADITNMKVHMRIHTGE 149
+C CGK F + + H +H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 28.6 bits (63), Expect = 0.19
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 121 VREHQCSVCGKAFADITNMKVHMRIHTG 148
+R + CSVCGK F+ M+ H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.5 bits (60), Expect = 0.49
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 234 RPFVCNMCPSTFKLKKHLRQHYKVH 258
RP+ C++C F LK + HY+VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 26.3 bits (57), Expect = 1.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHT 231
C VCGK F +K Q++ H VHT
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHT 27
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 32.0 bits (73), Expect = 0.20
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 112 CHIKAVH----ENVREHQCSVCGKAFADITNMKVHMRIHTGE-KKYVCETCGASFALWGS 166
CH K + E QC C +A++ N K+ H C +C
Sbjct: 18 CHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSC--------- 68
Query: 167 LNVHSYSHTNTQFVCSYCGNTYKNPKALTS 196
H H +F C+ C + P +
Sbjct: 69 ---HK-GHEEPKFYCNECHSFDIKPMPFSD 94
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 31.5 bits (71), Expect = 0.30
Identities = 22/114 (19%), Positives = 30/114 (26%), Gaps = 23/114 (20%)
Query: 101 KKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGAS 160
K V H + CS C G++ + C+ C
Sbjct: 30 KNVHEVK----NHKFTARFFKQPTFCSHCTDFIWGF-----------GKQGFQCQVC--- 71
Query: 161 FALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCG 214
S VH H F C + + H HT + CD CG
Sbjct: 72 -----SFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCG 120
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.3 bits (63), Expect = 0.37
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 129 CGKAFADITNMKVHMRIHTGEK 150
C K F N++ H++ H ++
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.6 bits (56), Expect = 3.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 213 CGKEFRMKRQLKEHMAVHTTDR 234
C K F+ + ++ H+ H DR
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
Score = 24.8 bits (54), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 233 DRPFVC--NMCPSTFKLKKHLRQHYKVHLK 260
D+ F C C TFK + ++R H + HL+
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 28.7 bits (64), Expect = 0.37
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 139 MKVHMRIHTGEKKYVCETCGASFALWGSLNV-HSYSHTNTQFVCSYCG 185
++ R T + C C ++F L + F C++C
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFT---DLEANQLFDPMTGTFRCTFCH 46
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 0.39
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 232 TDRPFVCNMCPSTFKLKKHLRQHYKVH 258
T + + C+ C +TF L+KHL QH K H
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTH 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.48
Identities = 24/196 (12%), Positives = 42/196 (21%), Gaps = 93/196 (47%)
Query: 39 MF----LRLPKVHSHFRKKNA-------IHVNNINKKVSYKCPDCSVIVVS------YSG 81
M L +V + K N+ + ++ +N +VVS Y G
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKN--LVVSGPPQSLY-G 388
Query: 82 FKSHLDIHNVEKEYCCHICKKVFLRNRNLVC-----------H----------------- 113
L + + F R L H
Sbjct: 389 LNLTL--RKAKAPSGLDQSRIPF-SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 114 ----IKA------VH-----ENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 158
A V+ ++R S+ + I + V
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK---------------- 489
Query: 159 ASFALWGSLNVHSYSH 174
W + +H
Sbjct: 490 -----WETTTQFKATH 500
Score = 29.2 bits (65), Expect = 1.5
Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 66/177 (37%)
Query: 94 EYC--CHI---------CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVH 142
EY + + VF R + V + I +V
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRG-------MTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 143 MRIHTGEKKYVCETCGASFALWGSL----NVHSYSHTNTQFVCSYCGNTYKNPKALTSHI 198
+YV E G G L N Y+ N Q+V + G+ +AL
Sbjct: 1819 ASFSQEALQYVVERVGKRT---GWLVEIVN---YNVENQQYVAA--GDL----RAL---- 1862
Query: 199 RNSHTIHQKSICDVCGKEFRMKR----QLKEHMAVHTTDRPFVCNMCPSTFKLKKHL 251
++ +V ++++ +L++ +++ +++ HL
Sbjct: 1863 --------DTVTNVL-NFIKLQKIDIIELQKSLSLE---------------EVEGHL 1895
Score = 28.1 bits (62), Expect = 4.3
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 21/102 (20%)
Query: 143 MRIHTGEKKYVCETCGASFALWGSLNVH---SYSHTNTQFVCSYCGNTYKNPKALTSHI- 198
M G Y +T A+ +W + H +Y + V NP LT H
Sbjct: 1631 M----GMDLY--KTSKAAQDVWNRADNHFKDTYGFSILDIV-------INNPVNLTIHFG 1677
Query: 199 -RNSHTIHQ---KSICDVCGKEFRMKRQLKEHMAVHTTDRPF 236
I + I + ++ + + H+T F
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.51
Identities = 5/49 (10%), Positives = 11/49 (22%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 258
+ K Q H + ++ + LR +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.9 bits (61), Expect = 3.4
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 69 CPDCSVIVVSYSGFKSHLDIHNVEKEYCCHICKKVFLRNRNLVCHIK 115
D + S S H ++ EK ++V +L I
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 27.5 bits (60), Expect = 4.9
Identities = 3/36 (8%), Positives = 11/36 (30%)
Query: 199 RNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDR 234
RN ++ + + L+ + + +
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.1 bits (59), Expect = 0.84
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSH 202
+ C CG YKN L+ H +SH
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSH 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.90
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 2 FI--KHENSDFVCNLCPPGSKVVVKYVHYLERHVRKHHTMFLRLPKVHSHFRKKNAIHVN 59
F+ K + N + + Y + ++ + + RL F K ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENL- 559
Query: 60 NINKKVSYKCPDCSVI 75
++
Sbjct: 560 -------ICSKYTDLL 568
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 29.3 bits (65), Expect = 0.96
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 233 DRPFVCNMCPSTF-----KLKKHLRQHYKVHLK 260
C C TF KLK HL++ Y L
Sbjct: 167 QEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLD 199
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 29.0 bits (64), Expect = 1.5
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 21/119 (17%)
Query: 115 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSH 174
AV E C CG + ++ + TG + C C + +
Sbjct: 174 GAVVETESRTLCPACG-SPPMAGMIRQGGK-ETGLRYLSCSLCA-----------CEWHY 220
Query: 175 TNTQFVCSYCGNTYKNPKALTS----HIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAV 229
+ CS+C + A S + + C C + + A
Sbjct: 221 VRIK--CSHCEES--KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHAD 275
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 28.8 bits (65), Expect = 1.5
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 10/44 (22%)
Query: 179 FVCSYCGNTYKNPKALTSHIR-NSHTIHQKSICDVCGKEFRMKR 221
+C N + +C VCG R
Sbjct: 127 RICKNNPNHP--------NNIFIDAIKPNGDVCRVCGGAL-SAR 161
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 126 CSVCGKAFADITNMKVHMRIHTGEK 150
C C K F +++ H+RIHT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.0 bits (51), Expect = 8.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDR 234
C+ C K F+ K L+ H+ +HT ++
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 27.6 bits (60), Expect = 2.1
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 10/93 (10%)
Query: 177 TQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH------ 230
+ C C + +H ++ H + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRK--HANKVRRYMAINQGEDSVPAKKFKAAPAEISD 88
Query: 231 TTDRPFVCNMCPSTFKLKKHLRQHY--KVHLKM 261
DR C +C TF HY K H+K
Sbjct: 89 GEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 28.1 bits (63), Expect = 3.3
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 43 LPKVHSHFRKKNAIHVNNINKKVSYKCPDCSVIVVSY------SGFKSHLDIHNVE--KE 94
LP+ F++ ++ + V Y PD S+ Y G +HL V+ +
Sbjct: 66 LPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIG--AHLATELVKGWDK 123
Query: 95 YCCHIC 100
Y +C
Sbjct: 124 YGYSVC 129
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 27.8 bits (62), Expect = 3.5
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 11/39 (28%)
Query: 122 REHQ-CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGA 159
R H+ C CG M E +C C
Sbjct: 105 RSHKYCGYCGHE----------MYPSKTEWAMLCSHCRE 133
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.8 bits (53), Expect = 4.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 93 KEYCCHICKKVFLRNRNLVCHIKAVHENV 121
+ Y C +C+K F +R + HIK H V
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPEV 36
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 24.7 bits (54), Expect = 4.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 210 CDVCGKEFRMKRQLKEHMAVHTTDR 234
C C +EFR + L HM VH DR
Sbjct: 9 CSFCKREFRSAQALGGHMNVHRRDR 33
Score = 24.3 bits (53), Expect = 6.6
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 179 FVCSYCGNTYKNPKALTSHIRNSH 202
+ CS+C +++ +AL H N H
Sbjct: 7 YTCSFCKREFRSAQALGGH-MNVH 29
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.4 bits (52), Expect = 5.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 95 YCCHICKKVFLRNRNLVCHIKAVHENVR 122
Y C +C K F+ + L HI+ VH +
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 24.6 bits (53), Expect = 6.5
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 231 TTDRPFVCNM--CPSTFKLKKHLRQHYKVH 258
+ D+PF+C C F + HL H H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 206
Score = 26.2 bits (57), Expect = 9.0
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 151 KYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKA---LTSHIRNSHTIHQK 207
+ C +C F G ++ + Y + C +C + + + IR +++
Sbjct: 22 ELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYA 81
Query: 208 S--ICD--VCGKEFRM 219
CD CG R
Sbjct: 82 GWLQCDDSTCGIVTRQ 97
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 24.7 bits (54), Expect = 9.5
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 178 QFVCSYCGNTYKNPKALT--SH------IRNSHTIHQKSICDVCGKEFRMKRQL 223
+ +C C + + + + IR + + C C + L
Sbjct: 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.135 0.445
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,030,158
Number of extensions: 228645
Number of successful extensions: 2627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2233
Number of HSP's successfully gapped: 857
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)