BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11590
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
Y CP C L EH HT EK Y C CG F K L H TH+ K +KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 443 FCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLC 502
C K +S R LR H T K AC CG+ F +++ H H+ E+P+ C C
Sbjct: 82 ECGKSFSQRANLRAHQRT--HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 503 GIAYKWRKNLVRHQKN 518
G ++ NL HQ+
Sbjct: 140 GKSFSREDNLHTHQRT 155
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
Y+CP C L H HT EK Y C CG F +++L AH TH+ K + C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 443 FCEKVYSHRNRLRYHIST-VHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKL 501
C K +S LR H T E +K C CG+ F N+ H H+ E+P+ C
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYK---CPECGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 502 CGIAYKWRKNLVRHQKN 518
CG ++ R L HQ+
Sbjct: 167 CGKSFSRRDALNVHQRT 183
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 405 IHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHIST-VH 462
+ EK Y C CG F L H TH+ K +KC C K +S + L H T
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 463 ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKN 518
E +K C CG+ F N++ H H+ E+P+ C CG ++ +L HQ+
Sbjct: 75 EKPYK---CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 33/203 (16%)
Query: 56 SSESVCTEHSNLFPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPPDSKIMIKY 115
SS SV K ++C +C +SF ++L H + C P+
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKC----PECGKSFSD 61
Query: 116 AHLLVRHMKQCHTMQVHIPAVYKNFRSVTSFTMNNITQYKCPDCPAILQTFKNLKCHLDI 175
L RH + T YKCP+C NL+ H
Sbjct: 62 KKDLTRHQR----------------------THTGEKPYKCPECGKSFSQRANLRAHQRT 99
Query: 176 HSGEKDFSC-HINSNLSE--HIRMH---HTEEKKYICEVCGTSFLTWSSLNSHKYSH-DD 228
H+GEK ++C + S+ H+R H HT EK Y C CG SF +L++H+ +H +
Sbjct: 100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Query: 229 RKFSCSHCGNSYKNPIFLKRHFR 251
+ + C CG S+ L H R
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQR 182
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
Y+CP C L H HT EK Y C CG F + +L H TH+ K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
Y+CP C L++H HT EK Y C CG F S L H TH+ K +KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 443 FCEKVYSHRNRLRYHISTVHENK 465
C K +S + L H T H+NK
Sbjct: 65 ECGKSFSRSDHLSRHQRT-HQNK 86
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC-------HINSNLSEHIRMHHTEEKKYIC 206
YKCP+C NL+ H H+GEK + C +S+L +H R HT EK Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKPYKC 63
Query: 207 EVCGTSFLTWSSLNSHKYSHDDRK 230
CG SF L+ H+ +H ++K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 29/109 (26%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKS 468
EK Y C CG F S+L H TH+ EK Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTG--------EKPY-------------------- 33
Query: 469 AACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C CG+ F S +++KH H+ E+P+ C CG ++ +L RHQ+
Sbjct: 34 -KCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
Y+CP C L++H HT EK Y C CG F L H TH N K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNPIFLKRHFR 251
EK Y C CG SF S+L H+ +H ++ + C CG S+ L++H R
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 439 FKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFV 498
F C C K + + L H+ +H + + C CG+ F +MKKH +H+ E+P
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSD-TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 499 CKLCGIAYKWRKNLVRHQK 517
C++CG A+ NL+ H +
Sbjct: 60 CQVCGKAFSQSSNLITHSR 78
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 376 IIVEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+I DT Y C +C +K+H IHT EK + C++CG F S+L+ H+ H+
Sbjct: 22 LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Query: 436 N 436
Sbjct: 82 G 82
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 412 YVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENKWKSAA 470
+ C++CG F S+L H HS+ + + C +C K + ++ ++ H + +H + K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGE-KPHK 59
Query: 471 CDICGRVFLDSKNMKKHAAVHS 492
C +CG+ F S N+ H+ H+
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHT 81
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
+ C C K TL H IH+ + Y C+ CG F KS + HT H+ K KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 443 FCEKVYSHRNRLRYH 457
C K +S + L H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC-------HINSNLSEHIRMHHTEEKKYIC 206
+ C C + L HL IHS + + C H S++ +H +H T EK + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHKC 60
Query: 207 EVCGTSFLTWSSLNSHKYSH 226
+VCG +F S+L +H H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 204 YICEVCGTSFLTWSSLNSHKYSHDD-RKFSCSHCGNSYKNPIFLKRH 249
+ C++CG SF S+L++H H D R + C +CG + +K+H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIF 245
+S LS H+ +H ++ + Y C+ CG F S + H + H K C CG ++
Sbjct: 14 SSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSN 72
Query: 246 LKRHFRE 252
L H R+
Sbjct: 73 LITHSRK 79
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F SL H H+ K F+C C + +S + L HI T
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F S K+H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI---NSNLSEHIRMH---HTEEKKYI 205
Y CP C +L H+ IH+G+K F C I N + S+H+ H HT EK +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 206 CEVCGTSFLTWSSLNSHKYSH 226
C++CG F H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S L HI +H + K C IC R F S ++ H H+ E+PF C +CG
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 179 EKDFSCHINS---------NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDR 229
E+ ++C + S +L+ HIR+H T +K + C +C +F L +H +H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 230 K-FSCSHCGNSYKNPIFLKRH 249
K F+C CG + KRH
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+QC C L H HT EK + C++CG F HT H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKY 204
Y CP C NL H+ IH+G+K F C I ++ L++HIR H T EK +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH-TGEKPF 63
Query: 205 ICEVCGTSFLTWSSLNSHKYSH 226
C++CG F T + + H H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F K++L H H+ K F+C C + +S L HI T
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F +H +H
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S + L HI +H + K C IC R F + +H H+ E+PF C +CG
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQ-KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFATLHTRDRHTK 83
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 188 SNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFL 246
+NL HIR+H T +K + C +C +F + LN H +H K F+C CG F
Sbjct: 20 TNLDTHIRIH-TGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK-----FA 73
Query: 247 KRHFRESHLK 256
H R+ H K
Sbjct: 74 TLHTRDRHTK 83
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 384 YQCP--HCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FK 440
Y CP C L H IHT +K + C +C F + L H TH+ K F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 441 CDFCEKVYS 449
CD C + ++
Sbjct: 65 CDICGRKFA 73
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+QC C L +H HT EK + C++CG F + HT H K
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F S+L H H+ K F+C C + +S + L HI T
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F S K+H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI---NSNLSEHIRMH---HTEEKKYI 205
Y CP C NL H+ IH+G+K F C I N + S+H+ H HT EK +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 206 CEVCGTSFLTWSSLNSHKYSH 226
C++CG F H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S + L HI +H + K C IC R F S ++ H H+ E+PF C +CG
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIF 245
+SNL+ HIR+H T +K + C +C +F L +H +H K F+C CG +
Sbjct: 19 SSNLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 246 LKRH 249
KRH
Sbjct: 78 RKRH 81
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+QC C L H HT EK + C++CG F HT H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 408 SEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENKW 466
++K+++C+ CG +F +L+ H TH++ + + CD C K + ++ LR H +H +K
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIH-SKE 71
Query: 467 KSAACDICGRVFLDSKNMKKHAAVH 491
K C CG+ F S+ + H +H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
K C CGR F S N+ H H+ ERP+ C +C A++ + +L H+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 189 NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSY 240
NL H R H T+E+ Y C++C +F L H+Y H K F C CG +
Sbjct: 32 NLLIHERTH-TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 375 RIIVEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
R+ + + C C + L H HT E+ Y C++C F + L H H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 435 SNVK-FKCDFCEKVYSHRNRLRYHISTVHENKWKSAA 470
S K FKC C K + L H + + +AA
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 168 NLKCHLDIHSGEKDFSC---HINSNLSEHIRMH---HTEEKKYICEVCGTSFLTWSSLNS 221
NL H H+ E+ ++C H +H+R H H++EK + C+ CG F +L
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV 91
Query: 222 HKYSH 226
HK H
Sbjct: 92 HKTLH 96
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 195 RMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNPIFLKRHFRES 253
R+ +K++IC+ CG F +L H+ +H D+R ++C C +++ + H R+
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR----QDHLRDH 64
Query: 254 HLKHSKSNPEQYAVKSLQDIMYWCNVCSQRCYLSATCSIHR 294
HSK P + C C + S T ++H+
Sbjct: 65 RYIHSKEKP------------FKCQECGKGFCQSRTLAVHK 93
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKY 204
Y CP C NL H+ IH+G+K F C I ++L+ HIR H T EK +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH-TGEKPF 63
Query: 205 ICEVCGTSFLTWSSLNSHKYSH 226
C++CG F T + H H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F K++L H H+ K F+C C + +S + L HI T
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F +H +H
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIH 85
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 384 YQCP--HCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FK 440
Y CP C L H IHT +K + C +C F ++SL AH TH+ K F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 441 CDFCEKVYS 449
CD C + ++
Sbjct: 65 CDICGRKFA 73
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S + L HI +H + K C IC R F ++ H H+ E+PF C +CG
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQ-KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFATLHTRTRHTK 83
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 179 EKDFSCHINS---------NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDR 229
E+ ++C + S NL HIR+H T +K + C +C +F +SLN+H +H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH-TGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 230 K-FSCSHCGNSY 240
K F+C CG +
Sbjct: 61 KPFACDICGRKF 72
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+QC C +L H HT EK + C++CG F + HT H K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F + L H H+ K F+C C + +S + L HI T
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F S K+H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI---NSNLSEHIRMH---HTEEKKYI 205
Y CP C +L H+ IH+G+K F C I N + S+H+ H HT EK +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 206 CEVCGTSFLTWSSLNSHKYSH 226
C++CG F H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S L HI +H + K C IC R F S ++ H H+ E+PF C +CG
Sbjct: 12 CDRRFSRSADLTRHIR-IHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIF 245
+++L+ HIR+H T +K + C +C +F L +H +H K F+C CG +
Sbjct: 19 SADLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 246 LKRH 249
KRH
Sbjct: 78 RKRH 81
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+QC C L H HT EK + C++CG F HT H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F + L H H+ K F+C C + +S + L HI T
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F S K+H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI---NSNLSEHIRMH---HTEEKKYI 205
Y CP C L H+ IH+G+K F C I N + S+H+ H HT EK +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 206 CEVCGTSFLTWSSLNSHKYSH 226
C++CG F H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S L HI +H + K C IC R F S ++ H H+ E+PF C +CG
Sbjct: 12 CDRRFSRSAELTRHIR-IHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIF 245
++ L+ HIR+H T +K + C +C +F L +H +H K F+C CG +
Sbjct: 19 SAELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 246 LKRH 249
KRH
Sbjct: 78 RKRH 81
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+QC C L H HT EK + C++CG F HT H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 385 QCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTT----THSNVKFK 440
+CP C + + LK H HT EK + C CG + K +L+ H S F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 441 CDFCEKVYSHRNRLRYH-ISTVHENKWKSAACDICGRVFLDSKNMKKH 487
C C++ + R LR H +S E +K C C + F+ K+++ H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYK---CSSCSQQFMQKKDLQSH 113
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 468 SAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ-KNC 519
C C + FL +K H H+ E+PF C CG Y ++NL+ H+ +NC
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 155 KCPDCPAILQTFKNLKCHLDIHSGEKDFSC-------HINSNLSEHIRMH--HTEEKKYI 205
+CP C + LK H H+GEK F C NL EH + + E+ +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 206 CEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNPIFLKRHFRESH 254
C VC +F L H SH + + CS C + L+ H + H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F L H H+ K F+C C + +S + L HI T
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F S K+H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI---NSNLSEHIRMH---HTEEKKYI 205
Y CP C L H+ IH+G+K F C I N + S+H+ H HT EK +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 206 CEVCGTSFLTWSSLNSHKYSH 226
C++CG F H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S + L HI +H + K C IC R F S ++ H H+ E+PF C +CG
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 179 EKDFSCHINS---------NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDR 229
E+ ++C + S L+ HIR+H T +K + C +C +F L +H +H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 230 K-FSCSHCGNSYKNPIFLKRH 249
K F+C CG + KRH
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+QC C L H HT EK + C++CG F HT H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F L H H+ K F+C C + +S + L HI T
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTG 58
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F S K+H +H
Sbjct: 59 EKPFACDICGRKFARSDERKRHTKIH 84
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI---NSNLSEHIRMH---HTEEKKYI 205
Y CP C L H+ IH+G+K F C I N + S+H+ H HT EK +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 206 CEVCGTSFLTWSSLNSHKYSH 226
C++CG F H H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S + L HI +H + K C IC R F S ++ H H+ E+PF C +CG
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 69 RKFARSDERKRHTK 82
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 179 EKDFSCHINS---------NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDR 229
E+ ++C + S L+ HIR+H T +K + C +C +F L +H +H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 230 K-FSCSHCGNSYKNPIFLKRH 249
K F+C CG + KRH
Sbjct: 60 KPFACDICGRKFARSDERKRH 80
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+QC C L H HT EK + C++CG F HT H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 409 EKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
E+ Y C E C F L H H+ K F+C C + +S + L HI T
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTG 59
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVH 491
K ACDICGR F S K+H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 154 YKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI---NSNLSEHIRMH---HTEEKKYI 205
Y CP C L H+ IH+G+K F C I N + S+H+ H HT EK +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 206 CEVCGTSFLTWSSLNSHKYSH 226
C++CG F H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C++ +S + L HI +H + K C IC R F S ++ H H+ E+PF C +CG
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 504 IAYKWRKNLVRHQK 517
+ RH K
Sbjct: 70 RKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 179 EKDFSCHINS---------NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDR 229
E+ ++C + S L+ HIR+H T +K + C +C +F L +H +H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 230 K-FSCSHCGNSYKNPIFLKRH 249
K F+C CG + KRH
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+QC C L H HT EK + C++CG F HT H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 432 TTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVH 491
++ S+ KC+ C K +S +++L+ H+ K C C DS ++ KH +H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 492 STERPFVCKLCGIAYKWRKNLVRHQKN 518
S ERPF C++C A + L H ++
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
+KC C LK H+ H+G K + C +S+L++H+R+ H++E+ + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKC 67
Query: 207 EVCGTSFLTWSSLNSHKYSH 226
++C + S L H SH
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
LK H HT K Y C+ C SSL H HS+ + FKC C + ++L H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 458 I 458
+
Sbjct: 84 L 84
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 190 LSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNPIFLKR 248
L H+R H T K Y C+ C + SSLN H H D+R F C C + +N L
Sbjct: 24 LKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82
Query: 249 HFR 251
H R
Sbjct: 83 HLR 85
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 149 NNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMH 197
+ YKC C +L HL IHS E+ F C I +S L+ H+R H
Sbjct: 32 TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSN 436
Y+C C +L +H IH+ E+ + C++C + S L H +H+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 386 CPH--CPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
CPH C + + +++H + H + +VC CG F+ S L H H+ K F+C
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 443 F--CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHS 492
F C K +S LR H+ ++ D C + F S N+K H H+
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKL-- 501
C K++ + +R H+ H + + C CG+ F++S +K+H VH+ E+PF C
Sbjct: 13 CTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 502 CGIAYKWRKNLVRH 515
CG + NL H
Sbjct: 70 CGKRFSLDFNLRTH 83
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 156 CPDCPAILQTFKNLKCHLDIHSGEKDFSC---------HINSNLSEHIRMHHTEEKKYIC 206
C +C LK H +H+GEK F C ++ NL H+R+ HT ++ Y+C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVC 95
Query: 207 --EVCGTSFLTWSSLNSHKYSHDDRK 230
+ C F ++L SH +H K
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 397 WTLKEHFNIHTSEKKYVCEL--CGAYFIHKSSLVAHTTTHSNVK 438
+ L+ H IHT ++ YVC C F ++L +H TH+ K
Sbjct: 78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCS--HCGNSYKNP 243
NS + +H+ H + ++C CG +F+ S L H+ H K F C+ CG +
Sbjct: 20 NSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLD 77
Query: 244 IFLKRHFR 251
L+ H R
Sbjct: 78 FNLRTHVR 85
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
C ++F D+ M+KH H R VC CG A+ L RHQ
Sbjct: 13 CTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQ 54
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 383 RYQC--PHCPSLLKTFWTLKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK 438
RY C C + W L+ H HT EK + C E C F L H+ TH+ K
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 439 -FKCD--FCEKVYSHRNRLRYHISTVHENKWKSAACDI--CGRVFLDSKNMKKHAAVHST 493
F CD C+ ++ + ++ H + H K C CG+ F +K H H+
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 494 ERPFVC--KLCGIAYKWRKNLVRHQK-----NCKASAKCSLMTTS 531
+ P+ C + C + L RH+K CK CS + +
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT 176
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 158 DCPAILQTFKNLKCHLDIHSGEKDFSCH---------INSNLSEHI-RMHHTEEKKYIC- 206
C + +L H H+GEK+F+C +N+ +H R H+ + Y+C
Sbjct: 49 GCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCH 108
Query: 207 -EVCGTSFLTWSSLNSHKYSHDDR-KFSCSH--CGNSYKNPIFLKRH 249
E CG +F + L H++SH + + C H C + P LKRH
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 410 KKYVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKC--DFCEKVYSHRNRLRYHISTVHEN 464
K+Y+C CGA + L AH H+ K F C + CEK ++ + L H T
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 465 KWKSAACDICGRVFLDSKNMKKH-AAVHSTER-PFVCKL--CGIAYKWRKNLVRHQ 516
K + D C F NMKKH H+ + +VC CG A+K L HQ
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 7/139 (5%)
Query: 361 VAEKQYWKDVEEKCRIIVEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVC--ELCG 418
A + WK C+ E + C + L H HT EK + C + C
Sbjct: 22 AAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD 81
Query: 419 AYFIHKSSLVAHTTTHSNVK---FKCDF--CEKVYSHRNRLRYHISTVHENKWKSAACDI 473
F K+++ H N+K + C F C K + N+L+ H + + +
Sbjct: 82 LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG 141
Query: 474 CGRVFLDSKNMKKHAAVHS 492
C + F +K+H VH+
Sbjct: 142 CDKRFSLPSRLKRHEKVHA 160
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 468 SAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASA 523
AC+ICG++F D ++ +H HS E+P+ C +CG+ +K + + H ++ S
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 386 CPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFK---CD 442
C C + + + L H H+ EK Y C +CG F K + H +H K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 443 FCEKVYSHRNRLRYHISTVHEN 464
C K +S + L HI VH
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 177 SGEKDFSCHINSNLSEHI------RMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHD--- 227
SG +C I + + ++ H+ EK Y C VCG F ++ H SHD
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 228 DRKFSCSHCGNSYKNPIFLKRHFRESH 254
+ + C CG + P L H ++ H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 156 CPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTE-EKKYICE 207
C C I + +L H HSGEK +SC + +S H+R H K YIC+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 208 VCGTSFLTWSSLNSH 222
CG F LN H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
+ CE+CG F L H +HS K + C C + ++R+ YH+ + +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 466 WKSAACDICGRVFLDSKNMKKH-AAVHST 493
K C CG+ F ++ H VHS
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 441 CDFCEKVYSHRNRLRYHIST--VHENKWKSAACDICGRVFLDSKNMKKHAAVH--STERP 496
C+ C K++ R YH++ + + K +C +CG F M H H S +P
Sbjct: 10 CEICGKIF----RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 497 FVCKLCGIAYKWRKNLVRHQK 517
++C+ CG + +L H K
Sbjct: 66 YICQSCGKGFSRPDHLNGHIK 86
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 407 TSEKK-YVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKCDF--CEKVYSHRNRLRYHIST 460
SEK+ ++C C + S L H+ H+ K ++CDF CE+ +S ++L+ H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 461 VHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKL--CGIAYKWRKNLVRH 515
K C C R F S ++K H H+ E+PF C+ C + LVRH
Sbjct: 61 --HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 399 LKEHFNIHTSEKKYVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLR 455
L+ H HT EK Y C+ C F L H H+ VK F+C C++ +S + L+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 456 YHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVH 491
H T K S C + F S + +H +H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 157 PDCPAILQTFKNLKCHLDIHSGEKDFSCHINS-----NLSEHIRMH---HTEEKKYICEV 208
P C +L+ H H+GEK + C + S+ ++ H HT K + C+
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 209 CGTSFLTWSSLNSHKYSHDDRK-FSC 233
C F L +H +H K FSC
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 467 KSAACDI--CGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKN 518
K CD C R F S +K+H H+ +PF CK C + +L H +
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
Y+C C + + L H +HT EK Y C +CGA F ++L HT HS K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 439 FKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERP 496
+KCD C+ + ++ L H TVH + K C+ICG F N+K H +HS E+P
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGE-KPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
K CD C F N+ H VH+ E+P+ C +CG + NL H +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEE 201
YKC C A + NL H +H+GEK + C+I +NL H R+H E+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFR 251
+K Y C+ C SF +L SHK H K + C+ CG + P LK H R
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 188 SNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK 230
NL+ H + HT EK Y C +CG F ++L +H H K
Sbjct: 31 GNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 468 SAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
S C++C R F +++K+H H+ E+P+ C LC A+ R L+RH +
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 412 YVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHEN 464
+VCE+C F + L H +H+N K + C C + ++ R+ L H +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHT 431
LK H+ HT+EK Y C LC F + L+ H
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 204 YICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFRESH 254
++CEVC +F L H SH + K + C C ++ L RH ++ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 405 IHTSEKKYVCELCG-----AYFIHKSSLVAHTTTHSNVK-FKCDF--CEKVYSHRNRLRY 456
IH K++VC G F + LV H H+ K KC F C K YS L+
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 457 HISTVHENKWKSAACDICGRVFLDSKNMKKHA-AVHSTERPFVCKLCGIAYKW 508
H+ + K + C + F ++ + KH HS E+P+VCKL G ++
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY 140
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 399 LKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTT-THSNVKF---KCDFCEKVYSHRN 452
LK H HT EK Y+C E C F + S H THSN K K C K Y+ +
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 453 RLRYHISTVH 462
LR H+ TVH
Sbjct: 145 SLRKHVKTVH 154
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 35/161 (21%)
Query: 77 CEESFDNCNNLWSHMFIKH---ENSDFVCNLCPPDSKIM-IKYAHLLVRHMKQCHTMQVH 132
C + FD+ L H+ +H E +FVC+ ++ K ++LV HM++ HT +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKP 67
Query: 133 IPAVYKNFRSVTSFTMNNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHIN----- 187
++ R S +NLK HL H+GEK + C
Sbjct: 68 HKCTFEGCRKSYS-------------------RLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 188 ----SNLSEHIRMHHTEEKKYICEV--CGTSFLTWSSLNSH 222
S+ ++H H+ EK Y+C++ C + SSL H
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKCS 526
CD CG+ F S ++ KH H+ E+P+ C CG A+ R +L+ H + S S
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 380 DTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSN 436
+ RY+C C L +H HT EK Y C+ CG FI +S L+ H H+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 410 KKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
++Y C+ CG F H S L H TH+ K +KCD C K + R+ L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 438 KFKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERP 496
++KCD C K +SH + L H T K CD CG+ F+ ++ H VH+ P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRT--HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 200 EEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKR-HFRESHLKH 257
E ++Y C+ CG SF S L+ H+ +H K + C CG + F++R H H H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKA-----FIQRSHLIGHHRVH 69
Query: 258 SKSNP 262
+ S P
Sbjct: 70 TGSGP 74
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 444 CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C K ++H+++ H+S +H + C +CG+ F ++ H +H+ +P+ C +C
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLG-LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 504 IAYKWRKNLVRHQKNCKAS 522
+ WR + RH +C S
Sbjct: 73 KRFMWRDSFHRHVTSCTKS 91
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 401 EHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHIS 459
H ++H + Y C +CG F K LV H H+ +K ++C+ C K + R+ H++
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86
Query: 460 T 460
+
Sbjct: 87 S 87
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTT 433
Y C C K L H IHT K Y C +C F+ + S H T+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 376 IIVEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+IV+ + Y C C +L+ HFNIH+ EKKY C C F H H+
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 436 N-VKFKCDFCEKVYSHRNRLRYHISTVH 462
+++C C K + + + HI +VH
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 146 FTMNNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHINSN---LSEHI---RMHHT 199
++ Y C C +L+ H +IHS EK + C L+E+ +HHT
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 200 EEKKYICEVCGTSFLTWSSLNSH 222
E++Y C CG SF+ + ++SH
Sbjct: 75 GERRYQCLACGKSFINYQFMSSH 97
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 188 SNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNPIFL 246
++L H +H + EKKY C C F H+ H +R++ C CG S+ N F+
Sbjct: 36 TSLRRHFNIH-SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM 94
Query: 247 KRHFRESHLKHSKSNPEQYAV---KSLQDIMY 275
H + H + + + Y + +SLQ Y
Sbjct: 95 SSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY 126
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 435 SNVKFKCDFCEKVYSHRNRLRYHISTVHENKW-KSAACDICGRVFLDSKNMKKHAAVHST 493
V + C C++ Y LR H + + W K C C +VF ++ KH H+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNI---HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 494 ERPFVCKLCGIAY 506
ER + C CG ++
Sbjct: 76 ERRYQCLACGKSF 88
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 31/114 (27%)
Query: 385 QCPHCPSLLKTFWTLKEHFNIHTSEKKYVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKC 441
+CP K + L H +HT EK + C CG F +L H TH+ K FKC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 442 DFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTER 495
+F + C R F +S + KKH VH++++
Sbjct: 124 EF----------------------------EGCDRRFANSSDRKKHMHVHTSDK 149
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 77 CEESFDNCNNLWSHMFIKH----ENSDFVC--NLCPPDSKIMIKYAHLLVRHMKQCHTMQ 130
C+ +F + L +H+ ++H E ++ VC CP + K K + LV H++ HT +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK-SFKAKYKLVNHIR-VHTGE 88
Query: 131 VHIPAVYKNFRSVTSFTMNNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHINS 188
P + P C I +NLK H H+GEK F C
Sbjct: 89 KPFPCPF-------------------PGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
CG++F S+N+K H H+ E+PF C+ G
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 158 DCPAILQTFK---NLKCHLDIHSGEKDFSCHINS-----NLSEHIRMH---HTEEKKYIC 206
+CP ++FK L H+ +H+GEK F C SE++++H HT EK + C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 207 EV--CGTSFLTWSSLNSHKYSHDDRKFSCS 234
E C F S H + H K S
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
K C CG+ F S + +H VH+ E+P+ C CG A+ L+ HQ+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSN 436
Y C C L +H +HT EK Y C CG F S L+ H H++
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
EK Y C CG F S LV H H+ K +KC C K +S + L H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 441 CDF--CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFV 498
CD+ C K Y+ + L+ H+ T K D CG F S + +H H+ RPF
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 499 CKLCGIAYKWRKNLVRHQKN 518
C+ C A+ +L H K
Sbjct: 69 CQKCDRAFSRSDHLALHMKR 88
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 399 LKEHFNIHTSEKKYVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLR 455
LK H HT EK Y C+ CG F L H H+ + F+C C++ +S + L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 456 YHI 458
H+
Sbjct: 84 LHM 86
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 159 CPAILQTFKNLKCHLDIHSGEKDFSCHINS---------NLSEHIRMHHTEEKKYICEVC 209
C +LK HL H+GEK + C + L+ H R HT + + C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 72
Query: 210 GTSF 213
+F
Sbjct: 73 DRAF 76
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 441 CDF--CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFV 498
CD+ C K Y+ + L+ H+ T K D CG F S + +H H+ RPF
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 499 CKLCGIAYKWRKNLVRHQKN 518
C+ C A+ +L H K
Sbjct: 68 CQKCDRAFSRSDHLALHMKR 87
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 399 LKEHFNIHTSEKKYVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLR 455
LK H HT EK Y C+ CG F L H H+ + F+C C++ +S + L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 456 YHI 458
H+
Sbjct: 83 LHM 85
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 159 CPAILQTFKNLKCHLDIHSGEKDFSCHINS---------NLSEHIRMHHTEEKKYICEVC 209
C +LK HL H+GEK + C + L+ H R HT + + C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 71
Query: 210 GTSF 213
+F
Sbjct: 72 DRAF 75
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 387 PHCPSLLKTFWTLKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDF 443
P C + LK H HT EK Y C E C F L H H+ K F+C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 444 CEKVYSHRNRLRYHI 458
C + +S + L H+
Sbjct: 81 CNRSFSRSDHLALHM 95
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 157 PDCPAILQTFKNLKCHLDIHSGEKDFSCHINS---------NLSEHIRMHHTEEKKYICE 207
P C + +LK HL H+GEK + C L+ H R HT K + C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCG 79
Query: 208 VCGTSF 213
VC SF
Sbjct: 80 VCNRSF 85
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 441 CDF--CEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFV 498
CD+ C KVY+ + L+ H+ T K + C F S + +H H+ +PF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 499 CKLCGIAYKWRKNLVRHQK 517
C +C ++ +L H K
Sbjct: 78 CGVCNRSFSRSDHLALHMK 96
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 441 CDF--CEKVYSHRNRLRYHISTVHENKWKSAACD--ICGRVFLDSKNMKKHAAVHSTERP 496
CDF C +++S+R L +H H ++ KS +C CG+ F K++K+H +HS R
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 497 FVCKLCG 503
++C+ G
Sbjct: 69 YICEFSG 75
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 414 CELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHE 463
C CG +F L H TH+ K +KC+FCE + + LRYH+ H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 385 QCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+C +C ++ + L H HT EK Y CE C K+SL H H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 468 SAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRH 515
S C CG+ F + + H H+ E+P+ C+ C A + +L H
Sbjct: 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
ERP++C +CG A+ R NL++HQK
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQK 33
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
C +CG+ F D N+ KH +H+ E+P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
E+ Y+C +CG F +S+L+ H H+ K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
E+ YIC VCG +F S+L H+ H K S G
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
K C IC R F S ++ H H+ E+PF C +CG + RH+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 180 KDFSCHI---NSNLSEHIRMH---HTEEKKYICEVCGTSFLTWSSLNSHK 223
K F C I N + S+H+ H HT EK + C++CG F H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 410 KKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSH-----RNRLRYHISTVHE 463
K + C +C F L H TH+ K F CD C + ++ R+R HI + E
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 464 NK 465
+K
Sbjct: 62 DK 63
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 24/66 (36%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDF 443
+QC C L H HT EK + C++CG F H + D
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 444 CEKVYS 449
E++ S
Sbjct: 64 VEELLS 69
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKN 518
C+ CG +KKH H+ RP+ C C ++K + NL +H K+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 203 KYICEVCGTSFLTWSSLNSHKYSHDD-RKFSCSHCGNSYKNPIFLKRHFR 251
KYICE CG S L H +H D R + C++C S+K L +H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPF 497
K AC+ICG++F D ++ +H HS E+P+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C+ CG+ + D+ + +H H RP C CG ++ + + RH K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNPIFLKRHFR 251
E+ + C CG ++ S L+ H+ +H R SC CG +++ + RH +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 435 SNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTE 494
S F C+FC K Y + L H H ++ +C CG+ F D + +H VH +
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRH-RRAHLG-YRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 493 TERPFVCKLCGIAYKWRKNLVRHQK 517
+ERPF C CG Y+ L RH++
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRR 25
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 408 SEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFK-CDFCEKVYSHRNRLRYHISTVHENK 465
SE+ + C CG + S L H H + + C C K + ++ + H+ VH+NK
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL-KVHQNK 58
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
E+P++C CG A+ R NL++HQK
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQK 33
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK YIC CG +F S+L H+ H +K S G
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
EK Y+C CG F +S+L+ H H+ K
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 383 RYQC--PHCPSLLKTFWTLKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK 438
RY C C + W L+ H + HT EK + C E C F L H+ TH+ K
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 439 -FKC--DFCEKVYSHRNRLRYHISTVHENK 465
F C D C+ ++ + ++ H + H K
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 410 KKYVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKC--DFCEKVYSHRNRLRYHISTVHEN 464
K+Y+C CGA + L AH + H+ K F C + CEK ++ + L H T
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 465 KWKSAACDICGRVFLDSKNMKKH 487
K + D C F NMKKH
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKH 84
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 157 PDCPAILQTFKNLKCHLDIHSGEKDFSCHINS---------NLSEHIRMHHTEEKKYIC- 206
DC A L+ HL H+GEK F C +L+ H + HT EK + C
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCD 67
Query: 207 -EVCGTSFLTWSSLNSH 222
+ C F T +++ H
Sbjct: 68 SDGCDLRFTTKANMKKH 84
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK YIC CG SF+ S LN H+ H K S G
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
EK Y+C CG FI KS L H H+ K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 465 KWKSAACDI--CGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
K + AC + C R F S + +H +H+ ++PF C++C + +L H +
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 377 IVEDTMRYQCP--HCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+V Y CP C L H IHT +K + C +C F L H TH
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Query: 435 S 435
+
Sbjct: 73 T 73
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 142 SVTSFTMNNITQYKCP--DCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSE 192
++ ++ + + Y CP C L H+ IH+G+K F C I + +L+
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 193 HIRMH 197
HIR H
Sbjct: 68 HIRTH 72
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKN--LVRHQKN 518
CG+ + S ++K H H+ E+PF C G ++ ++ L RH++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHSNV 437
+ EK YVC CG F KS L+ H H+ V
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 492 STERPFVCKLCGIAYKWRKNLVRHQ 516
S E+P+VC CG A+ ++ L+ HQ
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQ 30
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 64 HSNLFPKCHSCQKCEESFDNCNNLW----SHMFIKHENSDFVCNLCPPDSKIMIKYAHLL 119
H N+ P +CQ W S + HE ++FV D +K+A +
Sbjct: 66 HPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVV-----DQSQAVKFALDM 120
Query: 120 VRHMKQCHTMQVHIPAVYKNFRSV 143
R M HT++ IP N RSV
Sbjct: 121 ARGMAFLHTLEPLIPRHALNSRSV 144
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
EK Y CE CG FIH S L H H+ K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK Y CE CG +F+ S L H+ H K S G
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
C+ CG+ F+ +++H +H+ E+P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
T EK Y C CG FI S L+ H THS
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+ EK Y C CG F KS L+ H H+ VK
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTT---THSNVKFKCDFCEKVYSHRNRLRYHISTVH 462
H+ EK Y C +C A F ++ H T + KF C C+ V + ++ L H+ H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 463 ENKWKSAA 470
S+
Sbjct: 70 SYSGPSSG 77
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSH---KYSHDDRKFSCSHCGNSYKNPIFLKRHFRESH 254
H+ EK Y C +C F ++ H K++ + KF C HC L H R+
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK-- 67
Query: 255 LKHSKSNP 262
+HS S P
Sbjct: 68 -QHSYSGP 74
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNV 437
EK Y C CG FI KS L+ H TH+ V
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 27/103 (26%)
Query: 433 THSNVK-FKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVH 491
TH+ K + C C+K + + L H H+ + AA
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--------------------- 47
Query: 492 STERPFVCKLCGIAYKWRKNLVRHQKNCKASAKCSLMTTSPLS 534
FVC CG + R + RH NC + P S
Sbjct: 48 -----FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 405 IHTSEKKYVCELCGAYFIHKSSLVAHTTTHSN-----VKFKCDFCEKVYSHRNRLRYHI 458
HT EK Y C C F K L H + + F C C K ++ RN + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 439 FKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAV 490
++C C +VY+H + H T H+ K C C + F NM H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 408 SEKKYVCELCGAYFIHKSSLVAHTTT--HSNVK-FKCDFCEKVYSHRNRLRYHISTVHE 463
E Y C++C + H S+ H T NVK + C FC K ++ ++ + H+ +H+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
CD+CG+ F S +++ H VH+ E+P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
CDICG+ F + +H+ VH+ E+P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK + C++CG SF S LN H H K S G
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 70 KCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPPDSKIMIKYAHLLVRHMKQCH 127
+CH C C ESF + H+ + H F C CP + L RH+ +CH
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPA----TFYSSPGLTRHINKCH 80
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 204 YICEVCGTSFLTWSSLNSH-KYSHDDRKFSCSHCGNSYKNPIFLKRHFRESH 254
++C VCG SF + + H + H + F C +C ++ + L RH + H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKAS 522
C +CG F ++H + + F CK C + L RH C S
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPS 82
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
C +CG+ F S ++ +H +VHS ERP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 490 VHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKCSLMTTSPLSVKF 537
V S ER + C CG+ ++ +K L+RH N + +PLS+ +
Sbjct: 4 VSSMERVYQCLRCGLTFRTKKQLIRHLVNTEK--------VNPLSIDY 43
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
EK Y C +CG F H+ SL H HS K
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK Y C VCG +F SL+ H+ H +K S G
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 462
Length = 88
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSE 409
YQC HC S L++ L H NIH E
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNEE 51
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
EK Y C CG F +SSL H THS K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK Y C CG +F SSL H+ +H K S G
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSSG 46
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
E+P+VC CG A+ LVRHQ+
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQR 33
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERP 496
K CD CG+ F S + +H +H+ E+P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 206 CEVCGTSFLTWSSLNSHKYSHDDR----KFSCSHCGNSYKNPIFLKRHFRESH 254
CE+CG + +SLN H+ H + +F C CG ++ P + H +SH
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 414 CELCGAYFIHKSSLVAHTTTHSN----VKFKCDFCEKVYSHRNRLRYHISTVH 462
CE+CG K+SL H H+ ++F C+FC K + + + H S H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 199 TEEKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
T EK + C+ C SF S+LNSH+ H K S G
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPSSG 46
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 202 KKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
K Y+C CG +F +SSL +H+ H K S G
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+ EK YVC CG FI KS + H H+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
EK Y C CG F KS L AH TH+ K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 410 KKYVCELCGAYFIHKSSLVAHTTTHSN 436
K YVC CG F KS L+ HT TH+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 484 MKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
++ H +H T+RPF C C K NL +H K
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2EPP|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 278
Length = 66
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 471 CDICGRVFLDSKNMKKHAAVH 491
C +CG+VF D+ +++H A H
Sbjct: 16 CGLCGKVFTDANRLRQHEAQH 36
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
EK Y C CG F KS L+ H THS K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERP 496
K C+ CG+VF + ++ +H +H+ E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 199 TEEKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
T+EK Y C CG +F T S+L +H+ H K S G
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSSG 46
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQ 516
E+P+ C CG A++ R NL HQ
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQ 32
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEK 180
YKC +C +T NL H IH+GEK
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK Y C CG +F SSL +H+ H +K S G
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSSG 46
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERP 496
K C+ CG+VF + ++ +H +H+ E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
E+P+ CK CG +++W L++HQ+
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQR 33
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 492 STERPFVCKLCGIAYKWRKNLVRHQK 517
S +RPFVC++C A+ + N RH K
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLK 28
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
E PF+C CG + + NL+ HQK
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQK 33
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHSN 436
E ++C CG F HK++L+ H H+
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
C CG+VF N+ H +H+ ERP
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHS 435
EK Y CE CGA F+ + L AH H+
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHT 35
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK Y C VCG +F+ + LN H H S G
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSSG 46
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERP 496
K C+ CG+VF + ++ +H +H+ E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|X Chain X, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|S Chain S, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|S Chain S, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|Y Chain Y, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|Y Chain Y, Ef-Tu Complex 3
pdb|2Y19|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|Y Chain Y, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 110
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 484 MKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKC 525
++K A +H+++ +C CG + RK + + K + AKC
Sbjct: 61 IEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKC 102
>pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s)
Length = 109
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 484 MKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKC 525
++K A +H+++ +C CG + RK + + K + AKC
Sbjct: 60 IEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKC 101
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
E+P+ C CG A+ R NL HQK
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQK 33
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
C CG+ F D N+ H +H+ E+P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|3TVE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 102
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 484 MKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKC 525
++K A +H+++ +C CG + RK + + K + AKC
Sbjct: 60 IEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKC 101
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
++PF C CG +++ + NLV HQ+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQR 33
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK Y C +CG SF S L+ H+ H K S G
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46
>pdb|3FIN|Y Chain Y, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 101
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 484 MKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKC 525
++K A +H+++ +C CG + RK + + K + AKC
Sbjct: 60 IEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKC 101
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.9 bits (63), Expect = 7.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTTHS 435
EK Y C+ CG F K SL+ H H+
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHT 35
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERP 496
C CG+ FL + N +H +H+ E+P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
E+PF C CG +Y R +L +HQ+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQR 33
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERP 496
K C+ CG+ F S + KH +HS E+P
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQKN 518
E+PF CK CG+ + W +L +H ++
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRS 34
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQKNCKASAKCS 526
E P++C CG ++ R +L HQ++C S S
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQK 517
E+P+ CK CG A+ +L++HQ+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQR 33
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK + CE CG F T S SH+ SH K S G
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 201 EKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
EK + CE CG F S L+SH+ H K S G
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRHQKN 518
E+P+ CK+C A+ + +L +HQK
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKT 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.131 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,963,801
Number of Sequences: 62578
Number of extensions: 681458
Number of successful extensions: 3340
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 914
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)