RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11590
(555 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 77.1 bits (191), Expect = 1e-16
Identities = 50/140 (35%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-F 439
Y+CP C K+F L H HT EK Y C CG F +++L AH TH+ K +
Sbjct: 50 YKCPECG---KSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPY 106
Query: 440 KCDFCEKVYSHRNRLRYHISTVH--ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPF 497
C C K +S LR H T H E K C CG+ F N+ H H+ E+P+
Sbjct: 107 ACPECGKSFSQLAHLRAHQRT-HTGE---KPYKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Query: 498 VCKLCGIAYKWRKNLVRHQK 517
C CG ++ R L HQ+
Sbjct: 163 KCPECGKSFSRRDALNVHQR 182
Score = 75.9 bits (188), Expect = 3e-16
Identities = 53/140 (37%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-F 439
Y CP C K+F L EH HT EK Y C CG F K L H TH+ K +
Sbjct: 22 YACPECG---KSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 440 KCDFCEKVYSHRNRLRYHISTVH--ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPF 497
KC C K +S R LR H T H E K AC CG+ F +++ H H+ E+P+
Sbjct: 79 KCPECGKSFSQRANLRAHQRT-HTGE---KPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 498 VCKLCGIAYKWRKNLVRHQK 517
C CG ++ NL HQ+
Sbjct: 135 KCPECGKSFSREDNLHTHQR 154
Score = 73.2 bits (181), Expect = 3e-15
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRY 456
+ + EK Y C CG F L H TH+ K +KC C K +S + L
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 457 HISTVH--ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVR 514
H T H E K C CG+ F N++ H H+ E+P+ C CG ++ +L
Sbjct: 68 HQRT-HTGE---KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Query: 515 HQK 517
HQ+
Sbjct: 124 HQR 126
Score = 53.6 bits (130), Expect = 1e-08
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 154 YKCPDCPAILQTFK---NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKK 203
YKCP+C ++F NL+ H H+GEK ++C ++L H R H T EK
Sbjct: 78 YKCPECG---KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-TGEKP 133
Query: 204 YICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFR 251
Y C CG SF +L++H+ +H K + C CG S+ L H R
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 53.2 bits (129), Expect = 2e-08
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 154 YKCPDCPAILQTFK---NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKK 203
YKCP+C ++F +L H H+GEK + C +NL H R H T EK
Sbjct: 50 YKCPECG---KSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKP 105
Query: 204 YICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFR 251
Y C CG SF + L +H+ +H K + C CG S+ L H R
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 51.3 bits (124), Expect = 1e-07
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 168 NLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLN 220
+ + GEK ++C + +L+EH R H T EK Y C CG SF L
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH-TGEKPYKCPECGKSFSDKKDLT 66
Query: 221 SHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFR 251
H+ +H K + C CG S+ L+ H R
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQR 98
Score = 48.2 bits (116), Expect = 1e-06
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 154 YKCPDCPAILQTFK---NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKK 203
Y CP+C ++F +L+ H H+GEK + C NL H R H T EK
Sbjct: 106 YACPECG---KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-TGEKP 161
Query: 204 YICEVCGTSFLTWSSLNSHKYSH 226
Y C CG SF +LN H+ +H
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTH 184
Score = 40.1 bits (95), Expect = 5e-04
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIF 245
+S+ + EK Y C CG SF L H+ +H K + C CG S+ +
Sbjct: 6 SSSSVAQAAL-EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64
Query: 246 LKRHFR 251
L RH R
Sbjct: 65 LTRHQR 70
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 72.2 bits (178), Expect = 2e-15
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYH--ISTVH 462
+ C C F+ K L H H+ K F+C C K Y + L H + ++
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 463 --ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
E + C +C F ++ H H+ E P+ C C + +K+L H
Sbjct: 62 RSE---QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 57.5 bits (140), Expect = 2e-10
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH-------INSNLSEHIRMH--HTEEKKY 204
+CP C + LK H H+GEK F C NL EH + + E+ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 205 ICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFRESH 254
C VC +F L H SH + CS C + L+ H + H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 53.3 bits (129), Expect = 6e-09
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 384 YQCPHCPSLLKTFW---TLKEH---FNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNV 437
++CP C K ++ L EH ++ SE+ + C +C F + L H +H+
Sbjct: 36 FECPKCG---KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Query: 438 K-FKCDFCEKVYSHRNRLRYHISTVH 462
+KC C + + + L+ H+ +H
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 45.2 bits (108), Expect = 4e-06
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 176 HSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHD- 227
SG C L H R HT EK + C CG + +L H+ +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 228 ---DRKFSCSHCGNSYKNPIFLKRHFR 251
++ F+CS C +++ + L+ H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMV 87
Score = 40.6 bits (96), Expect = 1e-04
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKN 518
C C + FL +K H H+ E+PF C CG Y ++NL+ H+
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
Score = 38.3 bits (90), Expect = 0.001
Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFRES 253
+ C C FL+ L H H K F C CG Y L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
Score = 29.8 bits (68), Expect = 0.90
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 154 YKCPDCPAILQTFK---NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEK 202
+ C C +TF+ L+ H+ H+GE + C +L H+ H+
Sbjct: 67 FTCSVCQ---ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 72.2 bits (178), Expect = 8e-15
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 394 KTF---WTLKEHFNIHTSEKKYVCE--LCGAYFIHKSSLVAHTTTHSNVK-FKCD--FCE 445
+ W L+ H HT EK + C+ C F L H+ TH+ K F CD C+
Sbjct: 22 AAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD 81
Query: 446 KVYSHRNRLRYHISTVHENKWKSAACDI--CGRVFLDSKNMKKHAAVHSTERPFVCK--L 501
++ + ++ H + H K C CG+ F +K H H+ + P+ C
Sbjct: 82 LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG 141
Query: 502 CGIAYKWRKNLVRHQK 517
C + L RH+K
Sbjct: 142 CDKRFSLPSRLKRHEK 157
Score = 57.2 bits (139), Expect = 9e-10
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 399 LKEHFNIHTSEKKYVCE--LCGAYFIHKSSLVAHTTTHSNVK---FKCDF--CEKVYSHR 451
L H HT EK + C+ C F K+++ H N+K + C F C K +
Sbjct: 60 LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKH 119
Query: 452 NRLRYHISTVHENKWKSAAC--DICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWR 509
N+L+ H + H + C + C + F +K+H VH+ C K
Sbjct: 120 NQLKVHQFS-HTQQ-LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Query: 510 KNLVRHQKNC 519
++H C
Sbjct: 178 TLYLKHVAEC 187
Score = 47.2 bits (113), Expect = 2e-06
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 168 NLKCHLDIHSGEKD-------------FSCHINSNLSEHIRMHHTEEKKYIC--EVCGTS 212
N+K H + K F H + L H H T++ Y C E C
Sbjct: 89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKH--NQLKVHQFSH-TQQLPYECPHEGCDKR 145
Query: 213 FLTWSSLNSHKYSHDDRK----FSCSHCGNSYKNPIFLKRHFRESH 254
F S L H+ H SCS G ++ +H E H
Sbjct: 146 FSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL---YLKHVAECH 188
Score = 46.8 bits (112), Expect = 4e-06
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 154 YKC--PDCPAILQTFKNLKCHLDIHSGEKDFSCH---------INSNLSEHIRMHHTEEK 202
Y C DC A L+ HL H+GEK F C +L+ H HT EK
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEK 71
Query: 203 KYICE--VCGTSFLTWSSLNSHKYSHDDRKF-----SCSHCGNSYKNPIFLKRHFR 251
+ C+ C F T +++ H + K +CG ++K LK H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Score = 44.5 bits (106), Expect = 2e-05
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 398 TLKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRL 454
LK H HT + Y C E C F S L H H+ K D C V
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Query: 455 RYHISTVHE 463
H++ H+
Sbjct: 181 LKHVAECHQ 189
Score = 44.1 bits (105), Expect = 3e-05
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 172 HLDIHSGEKDFSCHI---------NSNLSEHIRMHHTEEKKYICE--VCGTSFLTWSSLN 220
+ K + C N L H+ HT EK + C+ C F + L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 221 SHKYSHDDRK-FSCSH--CGNSYKNPIFLKRHFR 251
H +H K F+C C + +K+HF
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Score = 34.9 bits (81), Expect = 0.038
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVCK--LCGIAYKWRKNLVRHQK 517
CG + + ++ H H+ E+PF CK C + +L RH
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Score = 31.4 bits (72), Expect = 0.48
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 486 KHAAVHSTERPFVCKL--CGIAYKWRKNLVRHQK 517
A+ + ++C CG AY L H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLC 35
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 66.8 bits (164), Expect = 2e-13
Identities = 46/152 (30%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 384 YQCPHCPSLLKTFWTLKEHFN---IHTSEKKYVCELCGAY-----FIHKSSLVAHTTTHS 435
+ C + L H N IH K++VC G F + LV H H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 436 NVK-FKCDF--CEKVYSHRNRLRYHISTVH--ENKWKSAAC--DICGRVFLDSKNMKKHA 488
K KC F C K YS L+ H+ + H E K C + C + F ++ + KH
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGE---KPYMCEHEGCSKAFSNASDRAKHQ 119
Query: 489 A-VHSTERPFVCKL--CGIAYKWRKNLVRHQK 517
HS E+P+VCKL C Y +L +H K
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 50.3 bits (121), Expect = 1e-07
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 384 YQCPHC--PSLLKTF---WTLKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSN 436
+ C L+ F + L H HT EK + C E C + +L H +H+
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 437 VK-FKCDF--CEKVYSHRNRLRYHISTVHENKWKSAACDI--CGRVFLDSKNMKKHAAVH 491
K + C+ C K +S+ + H + H N+ K C + C + + D +++KH
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE-KPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 492 S 492
Sbjct: 154 H 154
Score = 48.4 bits (116), Expect = 5e-07
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 15/122 (12%)
Query: 409 EKKYVCELCGAYFIHKSSLVAHTTT---HSNVK-FKCDFCE-----KVYSHRNRLRYHIS 459
E + C F + LV H + H K F C + + + + L H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 460 TVHENKWKSAACDI--CGRVFLDSKNMKKHAAVHSTERPFVCK--LCGIAYKWRKNLVRH 515
H + K C C + + +N+K H H+ E+P++C+ C A+ + +H
Sbjct: 61 R-HTGE-KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Query: 516 QK 517
Q
Sbjct: 119 QN 120
Score = 48.0 bits (115), Expect = 7e-07
Identities = 41/175 (23%), Positives = 63/175 (36%), Gaps = 41/175 (23%)
Query: 70 KCHSCQKCEESFDNCNNLWSHMFIKH---ENSDFVCNLC--PPDSKIMIKYAHLLVRHMK 124
C + FD+ L H+ +H E +FVC+ + + L V HM+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYML-VVHMR 60
Query: 125 QCHTMQVHIPAVYKNFRSVTSFTMNNITQYKCP--DCPAILQTFKNLKCHLDIHSGEKDF 182
HT +KC C +NLK HL H+GEK +
Sbjct: 61 -RHT---------------------GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Query: 183 SCHIN---------SNLSEHIRMHHTEEKKYICEV--CGTSFLTWSSLNSHKYSH 226
C S+ ++H H+ EK Y+C++ C + SSL H +
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 37.6 bits (88), Expect = 0.003
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 180 KDFSCHINSNLSEHIRMH--HTEEKKYICEVCGT-----SFLTWSSLNSHKYSHDDRK-F 231
++F L HI H E K+++C G F L H H K
Sbjct: 11 QEFDSQ--EQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 232 SCSH--CGNSYKNPIFLKRHFR 251
C+ C SY LK H R
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLR 90
Score = 29.5 bits (67), Expect = 1.5
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 201 EKKYICEVCGTSFLTWSSLNSH---KYSHDDRK-FSCSHCGNSYKNPIF-----LKRHFR 251
E + C F + L H ++ H +RK F C G S + F L H R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 63.2 bits (155), Expect = 1e-12
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 29/120 (24%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYH 457
++K+++C+ CG +F +L+ H TH++ E+ Y
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD--------ERPY--------- 46
Query: 458 ISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
CDIC + F +++ H +HS E+PF C+ CG + + L H+
Sbjct: 47 ------------TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 52.8 bits (128), Expect = 6e-09
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 168 NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLN 220
+K+F C + NL H R H T+E+ Y C++C +F L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLR 62
Query: 221 SHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFR 251
H+Y H K F C CG + L H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 50.9 bits (123), Expect = 3e-08
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
+ C C NL H H+ E+ ++C I +L +H +H ++EK + C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-SKEKPFKC 76
Query: 207 EVCGTSFLTWSSLNSHKYSH 226
+ CG F +L HK H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 43.6 bits (104), Expect = 1e-05
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 188 SNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFL 246
S S +K++IC+ CG F +L H+ +H D + ++C C +++ L
Sbjct: 3 SGSSGGRLP-SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 247 KRHFR 251
+ H
Sbjct: 62 RDHRY 66
Score = 42.8 bits (102), Expect = 2e-05
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-F 439
Y C C K F L++H IH+ EK + C+ CG F +L H T H
Sbjct: 46 YTCDICH---KAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSP 102
Query: 440 KC 441
Sbjct: 103 TA 104
Score = 36.3 bits (85), Expect = 0.003
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
Y C C + +L+ H IHS EK F C + L+ H +H +
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH-MQTSSPTA 104
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 60.2 bits (147), Expect = 7e-12
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS--NVK-FKCDFCEKVYSHRNRL 454
+ H+ EK Y C +C A F ++ H NV F C C+ V + ++ L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 455 RYHISTVH 462
H+ H
Sbjct: 62 GVHLRKQH 69
Score = 55.6 bits (135), Expect = 3e-10
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 168 NLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKK-YICEVCGTSFLTWSSL 219
+ HSGEK + C+I + + HI HTE + C C T S L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 220 NSH 222
H
Sbjct: 62 GVH 64
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 189 NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH---DDRKFSCSHCGNSYKNPIF 245
+ R H + EK Y C +C F ++ H + KF C HC
Sbjct: 2 SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 246 LKRHFRESH 254
L H R+ H
Sbjct: 61 LGVHLRKQH 69
Score = 47.5 bits (114), Expect = 2e-07
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 426 SLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNM 484
S + THS K ++C C ++ ++ HI H C C V ++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 485 KKHA-AVHSTERPF 497
H HS P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTE--RPFVCKLCGIAYKWRKNLVRHQKN 518
C IC F S MK H TE F C C + +L H +
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGE--KDFSCHI-------NSNLSEHIRMHHTEEKKY 204
Y+C C A +K H+ E F C S+L H+R H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 30.2 bits (69), Expect = 0.29
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 483 NMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ HS E+P+ C +C + + H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL 36
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 60.5 bits (148), Expect = 1e-11
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 405 IHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVH- 462
+ +K Y C+ CG F HKS H + H ++ + C C K + ++ L H+ H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HT 61
Query: 463 -ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNL 512
K C+IC + F+ + +H V S + +
Sbjct: 62 GI---KPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKAEQNTTEASGP 107
Score = 48.2 bits (116), Expect = 2e-07
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 175 IHSGEKDFSCH------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDD 228
SG+K + C S H+ MH + Y C VCG F L H H
Sbjct: 4 GSSGDKLYPCQCGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 229 RK-FSCSHCG 237
K + C+ C
Sbjct: 63 IKPYECNICA 72
Score = 45.5 bits (109), Expect = 2e-06
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-F 439
Y C C K F L H IHT K Y C +C F+ + S H S K +
Sbjct: 38 YGCGVCG---KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSY 92
Query: 440 KCDFCEKVYSHRNRLR 455
+ E+ + +
Sbjct: 93 EAAKAEQNTTEASGPS 108
Score = 44.7 bits (107), Expect = 4e-06
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 168 NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLN 220
H+ +H G + + C + +L H+++H T K Y C +C F+ S
Sbjct: 24 QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKPYECNICAKRFMWRDSF- 81
Query: 221 SHKYSHDDRK-FSCSHCG 237
H++ K + +
Sbjct: 82 -HRHVTSCTKSYEAAKAE 98
Score = 43.2 bits (103), Expect = 1e-05
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 16/78 (20%)
Query: 154 YKCPDCPAILQTFK---NLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKK 203
Y C C + FK +L H+ IH+G K + C+I + H+ + K
Sbjct: 38 YGCGVCG---KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV---TSCTKS 91
Query: 204 YICEVCGTSFLTWSSLNS 221
Y + S +S
Sbjct: 92 YEAAKAEQNTTEASGPSS 109
Score = 40.5 bits (96), Expect = 1e-04
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
CG+ F +H ++H RP+ C +CG +K + +LV H K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 59.7 bits (146), Expect = 2e-11
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVH-- 462
S + CE+CG F K L H H+ VK +KC C+ + + L H+ H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSD 61
Query: 463 ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVC 499
E +K C IC +S + H H+ +
Sbjct: 62 ERPFK---CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 53.6 bits (130), Expect = 3e-09
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-F 439
++C C K F LK H HT K Y C+ C SSL H HS+ + F
Sbjct: 9 HKCEVCG---KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 440 KCDFCEKVYSHRNRLRYH 457
KC C + ++L H
Sbjct: 66 KCQICPYASRNSSQLTVH 83
Score = 51.7 bits (125), Expect = 1e-08
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+KC C LK H+ H+G K + C +S+L++H+R+H ++E+ + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH-SDERPFKC 67
Query: 207 EVCGTSFLTWSSLNSHKYSH 226
++C + S L H SH
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 48.6 bits (117), Expect = 1e-07
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 176 HSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDD 228
C L H+R HT K Y C+ C + SSLN H H D
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 229 RK-FSCSHCGNSYKNPIFLKRHFR 251
+ F C C + +N L H R
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLR 85
Score = 42.4 bits (101), Expect = 2e-05
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-F 439
Y+C C +L +H IH+ E+ + C++C + S L H +H+
Sbjct: 37 YKCKTCD---YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGP 93
Query: 440 KC 441
Sbjct: 94 SS 95
Score = 37.8 bits (89), Expect = 0.001
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
YKC C +L HL IHS E+ F C I +S L+ H+R H T +
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH-TGDSGPSS 95
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 59.5 bits (145), Expect = 4e-11
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 407 TSEKKYVCE--LCGAYFIHKSSLVAHTTTHSNVK-FKCDF--CEKVYSHRNRLRYHISTV 461
+ ++ ++C C + S L H+ H+ K ++CDF CE+ +S ++L+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR- 60
Query: 462 H--ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKL--CGIAYKWRKNLVRHQK 517
H K C C R F S ++K H H+ E+PF C+ C + LVRH
Sbjct: 61 HTGV---KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 51.8 bits (125), Expect = 2e-08
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 168 NLKCHLDIHSGEKDFSCHI---------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSS 218
+L+ H H+GEK + C + L H R H T K + C+ C F
Sbjct: 23 HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRSDH 81
Query: 219 LNSHKYSHDDRK-FSCS--HCGNSYKNPIFLKRHFR 251
L +H +H K FSC C + L RH
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 47.1 bits (113), Expect = 7e-07
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDF--CEKVYSHRNRLR 455
LK H HT K + C+ C F L HT TH+ K F C + C+K ++ + L
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Query: 456 YHIST 460
H +
Sbjct: 114 RHHNM 118
Score = 44.4 bits (106), Expect = 7e-06
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 168 NLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICEV--CGTSFLTWSS 218
LK H H+G K F C + +L H R H T EK + C C F
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDE 111
Query: 219 LNSHKYSH 226
L H H
Sbjct: 112 LVRHHNMH 119
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 60.4 bits (147), Expect = 5e-11
Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 20/142 (14%)
Query: 374 CRIIVEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYV---------CELCGAYFIHK 424
C+ I E + C T L H + C G F K
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 425 SSLVAHTTTHSNVK-FKCDF--CEKVYSHRNRLRYHISTVH--ENKWKSAACDI--CGRV 477
LV H H+ K F C F C K+++ L+ H T H E K C+ C R
Sbjct: 76 YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGE---KPFKCEFEGCDRR 131
Query: 478 FLDSKNMKKHAAVHSTERPFVC 499
F +S + KKH VH++++
Sbjct: 132 FANSSDRKKHMHVHTSDKSGPS 153
Score = 58.8 bits (143), Expect = 1e-10
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 394 KTFWTLKEHFN---IHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK----------FK 440
+ +K+ + I ++ + C F LV H T +
Sbjct: 5 SSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE 64
Query: 441 CDFCEKVYSHRNRLRYHISTVHENKWKSAACDI--CGRVFLDSKNMKKHAAVHSTERPFV 498
C K + + +L HI H + K C CG++F S+N+K H H+ E+PF
Sbjct: 65 CPREGKSFKAKYKLVNHIRV-HTGE-KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 499 CKL--CGIAYKWRKNLVRHQ 516
C+ C + + +H
Sbjct: 123 CEFEGCDRRFANSSDRKKHM 142
Score = 45.4 bits (108), Expect = 7e-06
Identities = 36/171 (21%), Positives = 49/171 (28%), Gaps = 30/171 (17%)
Query: 76 KCEESFDNCNNLWSHMFIKHENSDFVCNLCPPDSKIMIKYAHLLVRHMKQCHTMQVHIPA 135
S S +I C + L V H+ H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSC---DRTFSTMHEL-VTHVTMEH-------- 49
Query: 136 VYKNFRSVTSFTMNNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI--------- 186
V ++ +CP + L H+ +H+GEK F C
Sbjct: 50 VGGPEQNNHV-----CYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR 104
Query: 187 NSNLSEHIRMHHTEEKKYICEV--CGTSFLTWSSLNSHKYSHDDRK-FSCS 234
+ NL H R HT EK + CE C F S H + H K S
Sbjct: 105 SENLKIHKRT-HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 40.3 bits (95), Expect = 4e-04
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 188 SNLSEHIRMH--HTEEKKYICEVCGTSFLTWSSLNSH----------KYSHDDRKFSCSH 235
+ + + + + C +F T L +H + +H C
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 236 CGNSYKNPIFLKRHFR 251
G S+K L H R
Sbjct: 68 EGKSFKAKYKLVNHIR 83
Score = 31.9 bits (73), Expect = 0.23
Identities = 7/43 (16%), Positives = 10/43 (23%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
G K + + K C + LV H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHV 45
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 57.4 bits (139), Expect = 7e-11
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK----FKCDFCEKVYSHRNRLRYHISTV 461
+ CE+CG K+SL H H+ F C+FC K + + + H S
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 462 HENKWKSAACDICGRVF 478
H A + G
Sbjct: 62 HPAL-LLAPQESSGPSS 77
Score = 50.9 bits (122), Expect = 1e-08
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK----FSCSHCGNSYKNPIFLKRHFRES 253
+ CE+CG + +SLN H+ H + F C CG ++ P + H +S
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 254 H 254
H
Sbjct: 62 H 62
Score = 47.8 bits (114), Expect = 2e-07
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 176 HSGEKDFSCHI-------NSNLSEHIRMHHTE--EKKYICEVCGTSFLTWSSLNSHKYSH 226
SG C I ++L+ H R H ++ CE CG F S+ +H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 43.9 bits (104), Expect = 4e-06
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 384 YQCPHCPSLLKTF---WTLKEHFNIHTS---EKKYVCELCGAYFIHKSSLVAHTTTH 434
QC C T +L H H ++ CE CG F S+ AH +
Sbjct: 8 LQCEICG---FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 43.5 bits (103), Expect = 5e-06
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 471 CDICGRVFLDSKNMKKHAAVHST---ERPFVCKLCGIAYKWRKNLVRHQK 517
C+ICG ++ H H+ F C+ CG ++ ++ H+
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Score = 38.2 bits (89), Expect = 5e-04
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 10/70 (14%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHS---GEKDFSCHI-------NSNLSEHIRMHHTEEKK 203
+C C + +L H H+ F C +++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 204 YICEVCGTSF 213
E G S
Sbjct: 68 APQESSGPSS 77
Score = 28.5 bits (64), Expect = 1.2
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 491 HSTERPFVCKLCGIAYKWRKNLVRHQK 517
S C++CG + + +L HQ+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR 28
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 55.6 bits (135), Expect = 4e-10
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 176 HSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH-- 226
SG +C I +L+ H H + EK Y C VCG F ++ H SH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 227 -DDRKFSCSHCGNSYKNPIFLKRHFRESH 254
+ + C CG + P L H ++ H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 52.5 bits (127), Expect = 7e-09
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS--NVK 438
C C K F L H H+ EK Y C +CG F K + H +H K
Sbjct: 8 VACEICG---KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 439 -FKCDFCEKVYSHRNRLRYHISTVH 462
+ C C K +S + L HI VH
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 51.0 bits (123), Expect = 2e-08
Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 31/114 (27%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENK 465
+ CE+CG F L H +HS EK YS
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSG--------EKPYS---------------- 37
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVHSTE--RPFVCKLCGIAYKWRKNLVRHQK 517
C +CG F M H H +P++C+ CG + +L H K
Sbjct: 38 -----CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 51.0 bits (123), Expect = 2e-08
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKK-YI 205
C C I + +L H HSGEK +SC +S H+R H K YI
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 206 CEVCGTSFLTWSSLNSH 222
C+ CG F LN H
Sbjct: 68 CQSCGKGFSRPDHLNGH 84
Score = 32.5 bits (75), Expect = 0.068
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 13/60 (21%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGE-----------KDFSCHINSNLSEHIRMHHTEEK 202
Y CP C + + H+ H G K FS +L+ HI+ H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRP--DHLNGHIKQVHSGPS 93
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 54.4 bits (132), Expect = 1e-09
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 384 YQCPHCPSLLKTF---WTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFK 440
+QC C + F L H HT EK + C++CG F H +
Sbjct: 4 FQCRICM---RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 441 CDFCEKVYSHRNRLRYHIS 459
D E++ S L ++
Sbjct: 61 EDKVEELLSKNYHLENEVA 79
Score = 49.8 bits (120), Expect = 4e-08
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
++C C +L H+ H+GEK F+C I + H + H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILE 61
Query: 207 EVCGTSFLTWSSLNSHK 223
+ L +
Sbjct: 62 DKVEELLSKNYHLENEV 78
Score = 44.4 bits (106), Expect = 3e-06
Identities = 22/108 (20%), Positives = 31/108 (28%), Gaps = 30/108 (27%)
Query: 410 KKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSA 469
K + C +C F L H TH+ EK ++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG--------EKPFA-------------------- 33
Query: 470 ACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
CDICGR F S K+H + P + +L
Sbjct: 34 -CDICGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVA 79
Score = 33.2 bits (77), Expect = 0.034
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 202 KKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFR 251
K + C +C +F L +H +H K F+C CG + KRH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 53.6 bits (130), Expect = 1e-09
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
H ++ S+K Y C+ C A F +K +L +H T H+ K ++C+ C ++ L+ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 45.9 bits (110), Expect = 7e-07
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 168 NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLN 220
+ H + +K + C NL+ H +H T EK Y C +CG F ++L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRPANLK 62
Query: 221 SHKYSH 226
+H H
Sbjct: 63 THTRIH 68
Score = 44.4 bits (106), Expect = 2e-06
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 188 SNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFL 246
+ H M +K Y C+ C SF +L SHK H K + C+ CG + P L
Sbjct: 3 HHHHHHSHMT-HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 247 KRHFR 251
K H R
Sbjct: 62 KTHTR 66
Score = 42.8 bits (102), Expect = 9e-06
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
Y+C C +F L H +HT EK Y C +CGA F ++L HT H
Sbjct: 18 YKCDRCQ---ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 42.1 bits (100), Expect = 2e-05
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
CD C F N+ H VH+ E+P+ C +CG + NL H +
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 32.4 bits (75), Expect = 0.043
Identities = 7/37 (18%), Positives = 20/37 (54%)
Query: 481 SKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ H+ + +++P+ C C +++++ NL H+
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT 38
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 53.3 bits (129), Expect = 2e-09
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 176 HSGEKDFSCHIN---------SNLSEHIRMHHTEEKKYICE--VCGTSFLTWSSLNSHKY 224
SG C L+ H + H +K + C CG SF L H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 225 SH-DDRKFSCSHCGNSY 240
H D R + C G S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 48.3 bits (116), Expect = 1e-07
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 32/102 (31%)
Query: 406 HTSEKKYVCEL--CGAYFIHKSSLVAHT-TTHSNVK-FKCDFCEKVYSHRNRLRYHISTV 461
+ C+ CG F ++ L H H + K F C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA---------------- 45
Query: 462 HENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
CG+ F K++K+H +HS R ++C+ G
Sbjct: 46 ------------CGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 39.5 bits (93), Expect = 1e-04
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 399 LKEHFNI-HTSEKKYVCE--LCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEK 446
L H H +K + C CG F K L H HS+ + + C+F
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP 76
Score = 35.2 bits (82), Expect = 0.005
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 474 CGRVFLDSKNMKKHA-AVHSTERPFVCK--LCGIAYKWRKNLVRHQK 517
CGR+F + + + H H ++ F C CG ++ ++K+L H K
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 31.4 bits (72), Expect = 0.12
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYF 421
LKEH +H+ + Y+CE G
Sbjct: 56 LKEHMKLHSDTRDYICEFSGPSS 78
Score = 27.1 bits (61), Expect = 3.6
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 491 HSTERPFVCKL--CGIAYKWRKNLVRHQK 517
S C CG + R+ L H+K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKK 30
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.6 bits (127), Expect = 2e-09
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 405 IHTSEKKYVCELCGAYFIHKSSLVAH--TTTHSNVK-FKCDFCEKVYSHRNRLRYHISTV 461
E Y C++C + H S+ H T+ NVK + C FC K ++ ++ + H+ +
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 462 HE 463
H+
Sbjct: 64 HK 65
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 175 IHSGEKDFSCHI-------NSNLSEHIR-MHHTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
GE + C + SN H H K Y C C F ++ +H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 471 CDICGRVFLDSKNMKKH--AAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C +C RV+ N +H + + + C C + + N+ H K
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 39.1 bits (92), Expect = 2e-04
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHD---DRKFSCSHCGNSYKNPIFLKRHFR 251
E Y C+VC + S+ H + + + C C + + H +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 384 YQCPHCPSLLKTFW---TLKEHF--NIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNV 437
Y+C C + + H+ + + K Y C C F K ++ AH +
Sbjct: 11 YRCKVCS---RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 34.1 bits (79), Expect = 0.010
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 154 YKCPDCPAILQTFKNLKCHL--DIHSGEKDFSCHI-------NSNLSEHIRMHH 198
Y+C C + N H K + C N++ H+++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 29.4 bits (67), Expect = 0.38
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 491 HSTERPFVCKLCGIAYKWRKNLVRHQ 516
E + CK+C Y N RH
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHY 30
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 52.9 bits (128), Expect = 4e-09
Identities = 19/106 (17%), Positives = 26/106 (24%), Gaps = 25/106 (23%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYH 457
+ HT EK Y C C F K L H +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY----------------------- 38
Query: 458 ISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
+ C CG+ F M +HA + + G
Sbjct: 39 --HDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG 82
Score = 50.6 bits (122), Expect = 2e-08
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 168 NLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTE---EKKYICEVCGTSFLTWS 217
+ H+GEK ++C L H + +H ++C CG +F +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 218 SLNSHKYSHDDRK-FSCSHCGNSY 240
++ H + + G S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 41.4 bits (98), Expect = 4e-05
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 189 NLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH-----DDRKFSCSHCGNSYKNP 243
+ R H T EK Y C C +F L+ H + F CS CG ++
Sbjct: 2 SSGSSGRTH-TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 244 IFLKRHFR 251
+ RH
Sbjct: 61 NTMARHAD 68
Score = 32.1 bits (74), Expect = 0.062
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 483 NMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ H+ E+P+ C C ++ ++ L H K
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 53.7 bits (130), Expect = 4e-09
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 409 EKKYVCEL--CGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVH--EN 464
+ C C F S++ H TH C C K + ++L+ H H E
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLV-HTGE- 60
Query: 465 KWKSAACDI--CGRVFLDSKNMKKHAAVHSTERPFVCKL--CGIAYKWRKNLVRHQK 517
K C CG+ F N++ H +H+ +RP+VC C + NL H
Sbjct: 61 --KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 49.1 bits (118), Expect = 2e-07
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI---------NSNLSEHIRMHHTEEKKY 204
+ C +C LK H +H+GEK F C + NL H+R+ HT ++ Y
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPY 93
Query: 205 ICEV--CGTSFLTWSSLNSHKYSH 226
+C C F ++L SH +H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.7 bits (99), Expect = 8e-05
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 180 KDFSCHINSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH--C 236
K F NS + +H+ H + ++C CG +F+ S L H+ H K F C+ C
Sbjct: 15 KMFRD--NSAMRKHLHTHG--PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 237 GNSYKNPIFLKRHFR 251
G + L+ H R
Sbjct: 71 GKRFSLDFNLRTHVR 85
Score = 37.9 bits (89), Expect = 0.001
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 200 EEKKYIC--EVCGTSFLTWSSLNSHKYSHDDRKFSCSHCGNSYKNPIFLKRHFR 251
E + C + C F S++ H ++H R C+ CG ++ LKRH
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQL 55
Score = 33.6 bits (78), Expect = 0.038
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 168 NLKCHLDIHSGEKDFSCHIN---------SNLSEHIRMHHTEEKKY 204
NL+ H+ IH+G++ + C + +NL HI H + K
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT-HAKAKNN 123
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 51.7 bits (125), Expect = 8e-09
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 168 NLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLN 220
+L H+ IH+G+K F C I + +L+ HIR H T EK + C++CG F
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERK 79
Query: 221 SHKYSH 226
H H
Sbjct: 80 RHTKIH 85
Score = 49.8 bits (120), Expect = 4e-08
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRY 456
+L H IHT +K + C +C F L H TH+ K F CD C + ++ + +
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 457 HIST 460
H
Sbjct: 81 HTKI 84
Score = 48.2 bits (116), Expect = 2e-07
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 180 KDFSCHINSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGN 238
+ FS +L+ HIR+H T +K + C +C +F L +H +H K F+C CG
Sbjct: 14 RRFSQS--GSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 239 SYKNPIFLKRHFR 251
+ KRH +
Sbjct: 71 KFARSDERKRHTK 83
Score = 45.5 bits (109), Expect = 2e-06
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 31/111 (27%)
Query: 409 EKKYVCEL--CGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKW 466
E+ Y C + C F SL H H+ +K +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG--------QKPFQ----------------- 36
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C IC R F S ++ H H+ E+PF C +CG + RH K
Sbjct: 37 ----CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 41.7 bits (99), Expect = 3e-05
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 384 YQCPHCPSLLKTF---WTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+QC C ++ F L H HT EK + C++CG F HT H
Sbjct: 35 FQCRIC---MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 51.3 bits (124), Expect = 1e-08
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-F 439
+ C C K+F TL H IH+ + Y C+ CG F KS + HT H+ K
Sbjct: 2 FDCKICG---KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 440 KCDFCEKVYSHRNRLRYH 457
KC C K +S + L H
Sbjct: 59 KCQVCGKAFSQSSNLITH 76
Score = 50.1 bits (121), Expect = 3e-08
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 154 YKCPDCPAILQTFK---NLKCHLDIHSGEKDFSC-------HINSNLSEHIRMHHTEEKK 203
+ C C ++FK L HL IHS + + C H S++ +H +H T EK
Sbjct: 2 FDCKICG---KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKP 57
Query: 204 YICEVCGTSFLTWSSLNSHKYSH 226
+ C+VCG +F S+L +H H
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKH 80
Score = 48.6 bits (117), Expect = 1e-07
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 29/106 (27%)
Query: 412 YVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSAAC 471
+ C++CG F S+L H HS+ + Y C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD--------TRPY---------------------PC 32
Query: 472 DICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
CG+ F +MKKH +H+ E+P C++CG A+ NL+ H +
Sbjct: 33 QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 40.9 bits (97), Expect = 5e-05
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
Y C +C K F +K+H IHT EK + C++CG F S+L+ H+ H
Sbjct: 30 YPCQYCG---KRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 50.2 bits (121), Expect = 2e-08
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
IH+ EK Y C CG F S LV H H+ K +KC C K +S + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 44.0 bits (105), Expect = 3e-06
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 169 LKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNS 221
IHSGEK + C +S L +H R+H T EK Y C CG +F S L +
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLIN 60
Query: 222 HKYSH 226
H+ H
Sbjct: 61 HQRIH 65
Score = 42.5 bits (101), Expect = 1e-05
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C CG+ F S + +H VH+ E+P+ C CG A+ L+ HQ+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 40.5 bits (96), Expect = 6e-05
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
Y C C K F L +H +HT EK Y C CG F S L+ H H++
Sbjct: 15 YGCVECG---KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 38.2 bits (90), Expect = 3e-04
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 190 LSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKR 248
S +H + EK Y C CG +F S L H+ H K + C CG ++ L
Sbjct: 2 SSGSSGIH-SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 249 HFR 251
H R
Sbjct: 61 HQR 63
Score = 34.0 bits (79), Expect = 0.010
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKY 204
Y C +C L H +H+GEK + C NS L H R+ HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGPSS 71
Score = 34.0 bits (79), Expect = 0.012
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ +HS E+P+ C CG A+ LV+HQ+
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQR 35
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 50.1 bits (121), Expect = 2e-08
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRY 456
+ ++Y C+ CG F H S L H TH+ K +KCD C K + R+ L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 457 H 457
H
Sbjct: 65 H 65
Score = 45.5 bits (109), Expect = 1e-06
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 168 NLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLN 220
+ + + C +S+LS+H R H T EK Y C+ CG +F+ S L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLI 63
Query: 221 SHKYSH 226
H H
Sbjct: 64 GHHRVH 69
Score = 43.2 bits (103), Expect = 7e-06
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIF 245
+ + E ++Y C+ CG SF S L+ H+ +H K + C CG ++
Sbjct: 3 SGSSGRSEWQQ-RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 246 LKRHFR 251
L H R
Sbjct: 62 LIGHHR 67
Score = 42.0 bits (100), Expect = 2e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
CD CG+ F S ++ KH H+ E+P+ C CG A+ R +L+ H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 41.3 bits (98), Expect = 4e-05
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
Y+C C K+F L +H HT EK Y C+ CG FI +S L+ H H+
Sbjct: 19 YKCDECG---KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 34.7 bits (81), Expect = 0.007
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 481 SKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
S + + R + C CG ++ +L +H++
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 39
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHIST 460
+S C C K++L H H + FKC++C + L H+
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 42.9 bits (102), Expect = 8e-06
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 176 HSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDD 228
S C + L H R+H ++ + C C S+L+ H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 229 RKFSCSHCG 237
S G
Sbjct: 63 DM-SGPSSG 70
Score = 40.9 bits (97), Expect = 4e-05
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+C C + L+ H IH +++ + C C S+L H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C C ++ H +H T+RPF C C K NL +H K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFR 251
+ C C S + ++L H+ H + F C++C K P L +H +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 33.2 bits (77), Expect = 0.020
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKY 204
KC +C + L+ H IH ++ F C+ SNLS+H++ +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMSG 66
Score = 28.2 bits (64), Expect = 1.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 489 AVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ S+ P C C + + L H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 6e-08
Identities = 87/563 (15%), Positives = 153/563 (27%), Gaps = 184/563 (32%)
Query: 7 EFHFDVES---CAVSRLQDITF------PCEECK---------ELCVLSKYCIKHKDCSK 48
E V + S+LQ+ F P E EL + K+ + + S
Sbjct: 17 EHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAEL--VGKF-LGYVS-SL 71
Query: 49 AMSTPAPSSESVCTEHSNLFPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLCPPD 108
+ + V F E + N++ H L +
Sbjct: 72 VEPSKVGQFDQVLNLCLTEF---------ENCYLEGNDI--HAL--------AAKLLQEN 112
Query: 109 SKIMIKYAHLLVRHMKQCHTMQVHIPAVYKN--FRSVTS-----FTM----NNITQYKCP 157
++K L+ ++ + + FR+V + N Y
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--- 169
Query: 158 DCPAILQTFKNLKCHLDIH----SGEKDFSCHINSNLSEHIRMHHTEEKKYICEVCGTSF 213
F+ L+ D++ D LSE IR EK + G +
Sbjct: 170 --------FEELR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF---TQGLNI 215
Query: 214 LTWSSLNSHKYSHDDR-----KFSC--------SH----CGNSYKNPIFLKRHFRES--H 254
L W L + + D SC +H P L+ + + + H
Sbjct: 216 LEW--LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 255 LK---------HSKSNPEQY--AVKSLQDIMYWCNVCSQRCYLSATCSIHRPSNCKDQYK 303
+ + S + K++ ++++ V Y S+ PS +D +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAY--PNTSL-PPSILEDSLE 329
Query: 304 --------MSVSISNECDQHMECH--TCNEC--DSKH------N--DC-------QSLWD 336
M +SISN + ++ + N K N QSL+
Sbjct: 330 NNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 337 HVFSEHKNMLAFSKPDDSENKISKVAEKQYWKDVEEKCRIIVEDTMRY---QCP-HCPSL 392
+ K A S D S S E K + + R+ P H L
Sbjct: 389 LNLTLRK-AKAPSGLDQSRIPFS-----------ERKLKF----SNRFLPVASPFHSHLL 432
Query: 393 LKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSL---VAHTTTHSNVKFKCDFCEKVYS 449
+ + + + + + V T S D S
Sbjct: 433 VPASDLINKDLVKNNVS------------FNAKDIQIPVYDTFDGS------DLRVLSGS 474
Query: 450 HRNRLRYHIST--VHENKWKSAA 470
R+ I V W++
Sbjct: 475 ISERIVDCIIRLPVK---WETTT 494
Score = 38.1 bits (88), Expect = 0.009
Identities = 32/248 (12%), Positives = 71/248 (28%), Gaps = 73/248 (29%)
Query: 333 SLWDHVFSEHKNMLAFSK--PDDSENKISKVAEKQYWKDVEEKCRIIVEDTMRY------ 384
+ + S+ + F+K P+ +E + D E E ++
Sbjct: 25 ASFFIA-SQLQE--QFNKILPEPTEG---------FAADDEPTT--PAELVGKFLGYVSS 70
Query: 385 -----QCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKF 439
+ +L T F E Y L G IH +L A ++
Sbjct: 71 LVEPSKVGQFDQVLNLCLT---EF-----ENCY---LEGND-IH--ALAAKLLQENDTTL 116
Query: 440 --KCDFCEKVYSHRNRLRYHISTVHENKWKSAACD-------ICG-----RVFLDSKNMK 485
+ + + R + + A + I G + + ++
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--LR 174
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKA--SAKCSLMT------TSP----- 532
++ T V L + + L+R + + + +++ +P
Sbjct: 175 D---LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 533 LSVKFAMP 540
LS+ + P
Sbjct: 232 LSIPISCP 239
Score = 32.7 bits (74), Expect = 0.44
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 47/151 (31%)
Query: 173 LDIHSGEKDFSCHINSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDR--- 229
L + G + + + ++ ++ F + ++ DD
Sbjct: 9 LTLSHGSLEHVLLVPTAS--FF--IASQLQE--------QFNKILPEPTEGFAADDEPTT 56
Query: 230 ------KF-----SCSHCGNSYKNPIFLK---RHFRESHLK----HS-----KSNPEQYA 266
KF S + L F +L+ H+ +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 267 VKSLQDIMYWCNVCSQRCYLSATCSIHRPSN 297
VK+ + I + Y++A RP +
Sbjct: 117 VKTKELI---------KNYITARIMAKRPFD 138
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 48.3 bits (116), Expect = 2e-07
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI---------NSNLSEHIRMHHTEEKKY 204
C +LK HL H+GEK + C + L+ H R H T + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH-TGHRPF 66
Query: 205 ICEVCGTSFLTWSSLNSHKYSH 226
C+ C +F L H H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 46.4 bits (111), Expect = 6e-07
Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 29/113 (25%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHEN 464
T+ CG + S L AH TH+ K + CD+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG------------------- 42
Query: 465 KWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
CG F S + +H H+ RPF C+ C A+ +L H K
Sbjct: 43 ---------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 46.4 bits (111), Expect = 8e-07
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 383 RYQCPHCPSLLKTFWT---LKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNV 437
C KT+ LK H HT EK Y C + CG F L H H+
Sbjct: 7 TCDYAGCG---KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 438 K-FKCDFCEKVYSHRNRLRYHIST 460
+ F+C C++ +S + L H+
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKR 87
Score = 36.7 bits (86), Expect = 0.002
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
L H+ HT + + C+ C F L H H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 30.6 bits (70), Expect = 0.27
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSH--CGNSYKNPIFLKRHFR 251
T CG ++ S L +H +H ++ + C CG + L RH+R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 47.2 bits (113), Expect = 5e-07
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 168 NLKCHLDIHSGEKDFSCHI---------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSS 218
+LK HL H+GEK + C + L+ H R H T K + C VC SF
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-TGAKPFQCGVCNRSFSRSDH 90
Query: 219 LNSHKYSH 226
L H H
Sbjct: 91 LALHMKRH 98
Score = 46.5 bits (111), Expect = 1e-06
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 399 LKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLR 455
LK H HT EK Y C E C F L H H+ K F+C C + +S + L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 456 YHISTVHEN 464
H+ H+N
Sbjct: 93 LHMKR-HQN 100
Score = 41.5 bits (98), Expect = 6e-05
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 31/112 (27%)
Query: 409 EKKYVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENK 465
+ + C+ C + S L AH TH+ K +KC +
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG-------------------- 52
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C F S + +H H+ +PF C +C ++ +L H K
Sbjct: 53 --------CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 38.0 bits (89), Expect = 0.001
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 187 NSNLSEHIRMHHTEEKKYIC--EVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNP 243
+S+L H+R H T EK Y C E C F L H H + F C C S+
Sbjct: 30 SSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS 88
Query: 244 IFLKRHFR 251
L H +
Sbjct: 89 DHLALHMK 96
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 45.7 bits (107), Expect = 2e-06
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 178 GEKDFSCHI-------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK 230
++ + C + H R+ +C C F + H+ + +K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 231 FSCSHCGNSYKNPIFLKRHFRESHLKHSKSNPEQYA 266
+C C ++K+ + RH E H +++ + +
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPS 105
Score = 41.8 bits (97), Expect = 5e-05
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 378 VEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNV 437
VE+ YQC C + L + H + VC C F H +
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 438 KFKCDFCEKVYSHRNRLRYHISTVH 462
K C C + + + H VH
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 39.1 bits (90), Expect = 5e-04
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 425 SSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNM 484
S + + ++C C S H A C C F +
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA----AVCPYCSLRFFSPELK 58
Query: 485 KKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
++H + + C C +K ++ RHQ
Sbjct: 59 QEHES-KCEYKKLTCLECMRTFKSSFSIWRHQV 90
Score = 33.7 bits (76), Expect = 0.034
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 400 KEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHIS 459
+ +++ Y C LC A +H N C +C + + H S
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEHES 63
Query: 460 TVHENKWKSAACDICGRVFLDSKNMKKH 487
K C C R F S ++ +H
Sbjct: 64 KCEYKKLT---CLECMRTFKSSFSIWRH 88
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 45.1 bits (106), Expect = 4e-06
Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 24/118 (20%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYH 457
+ K + +I T K+ C+ C A + L H + + +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN----------- 54
Query: 458 ISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRH 515
+ +++ + ++ C CG +++ ++L H
Sbjct: 55 -------------NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 37.8 bits (87), Expect = 0.002
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 168 NLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMH----HTEEKKYICEVCGTSFLTW 216
+ K + I +G F C L+ H+ + S
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 217 SSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFRESHLKHSKSNPEQYA 266
SL + D +K C +CG+S+++ L H ++ KH + +
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT--KHYQKVSGPSS 114
Score = 36.3 bits (83), Expect = 0.004
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 11/107 (10%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCGNSYKNPIFL 246
S+ + + T K+ C+ C ++ T L H + N+
Sbjct: 4 GSSGKLYGSIF-TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN-----NP 57
Query: 247 KRHFRESHLKHSKSNPEQYAVKSLQDIMYWCNVCSQRCYLSATCSIH 293
KR + + ++ A K L+ C C S+H
Sbjct: 58 KRWSKPRKRSLLEMEGKEDAQKVLK-----CMYCGHSFESLQDLSVH 99
Score = 32.4 bits (73), Expect = 0.12
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 374 CRIIVEDTMRYQCPHCPSLLKTFWTLKEHFNI-----HTSEKKYVCELCGAYFIHKSSLV 428
I +++C C + T L H N + + K SL+
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 429 AHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
K KC +C + L H
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 30.9 bits (69), Expect = 0.32
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 154 YKCPDCPAILQTFKNLKCHLDI-----HSGEKDFSCHINSNLSEHIRMH------HTEEK 202
++C DC A T L H++ + + + R +K
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 203 KYICEVCGTSFLTWSSLNSH 222
C CG SF + L+ H
Sbjct: 80 VLKCMYCGHSFESLQDLSVH 99
Score = 30.9 bits (69), Expect = 0.32
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 481 SKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ K + ++ + F CK C AY L H
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 43.8 bits (104), Expect = 5e-06
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 399 LKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLR 455
LK H HT + Y C E C F S L H H+ K D C V
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 78
Query: 456 YHISTVH 462
H++ H
Sbjct: 79 KHVAECH 85
Score = 40.7 bits (96), Expect = 6e-05
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 154 YKC--PDCPAILQTFKNLKCHLDIHSGEKDFSCH---------INSNLSEHIRMHHTEEK 202
Y C +C + LK H H+ + + C + S L H ++H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH-AGYP 60
Query: 203 KYICEVCGTSFLTWSSLNSH 222
+ C TW+ H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 39.1 bits (92), Expect = 3e-04
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 180 KDFSCHINSNLSEHIRMHHTEEKKYIC--EVCGTSFLTWSSLNSHKYSHD-DRKFSCSHC 236
K F H + L H H T++ Y C E C F S L H+ H C
Sbjct: 11 KAFKKH--NQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67
Query: 237 GNSYKNPIFLKRHFRESH 254
K +H E H
Sbjct: 68 SFVGKTWTLYLKHVAECH 85
Score = 37.6 bits (88), Expect = 8e-04
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 31/109 (28%)
Query: 412 YVCEL--CGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENKWKS 468
YVC CG F + L H +H+ ++C
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG----------------------- 38
Query: 469 AACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C + F +K+H VH+ C K ++H
Sbjct: 39 -----CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 6e-06
Identities = 43/311 (13%), Positives = 75/311 (24%), Gaps = 115/311 (36%)
Query: 146 FTMNNITQYKCPD-CPAILQTFKNLKCHLDIHSGEKDFSC-HINSNLSEHIRMHHTEEKK 203
F QY+ D F +F C + + EE
Sbjct: 9 FETGEH-QYQYKDILSVFEDAFV------------DNFDCKDVQDMPKSILS---KEEID 52
Query: 204 YIC----EVCGTSFLTWSSLNSHK--------------Y--------------SHDDRKF 231
+I V GT L W+ L+ + Y S R +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 232 SCSHCGNSYKNPIFLKRHF-RESHLKHSKS-----NPEQYAV--------KS------LQ 271
N +F K + R + P + + K+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 272 DI---------MYWCNVCSQRCYLSATCSIHRPSNCKDQYKMSVSISNECDQHMECHTCN 322
++W N+ NC + + Q ++ + +
Sbjct: 173 SYKVQCKMDFKIFWLNL----------------KNCNSPETVLEMLQKLLYQ-IDPNWTS 215
Query: 323 ECDSKHNDCQSLWDHVFSEHKNMLAFSKP--------DDSENKISKVAEKQYWKDVEEKC 374
D N + H L SKP + V + W C
Sbjct: 216 RSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLN-------VQNAKAWNAFNLSC 266
Query: 375 RIIVEDTMRYQ 385
+I++ T R++
Sbjct: 267 KILL--TTRFK 275
Score = 48.3 bits (114), Expect = 7e-06
Identities = 59/433 (13%), Positives = 114/433 (26%), Gaps = 149/433 (34%)
Query: 73 SCQKCEESFDNCNNLWSHMFIK-HENSDFVCNLCPPDSKIMIKYAHLLVRHMKQCHTMQV 131
+C E + L + SD N I+ L R +K
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAE--LRRLLKS------ 240
Query: 132 HIPAVYKN----FRSVTSFTMNNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHIN 187
Y+N +V + F NL C + + + K + ++
Sbjct: 241 ---KPYENCLLVLLNVQN--------------AKAWNAF-NLSCKILLTTRFKQVTDFLS 282
Query: 188 SNLSEHIRMHH------TEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK---FSCSHCGN 238
+ + HI + H +E K + L + + S
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSL-------LLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 239 SYKNPIFLKRHFRESHLKHSKSNPEQYAVKSLQDIMYWCNVCSQRCY--LSATCSIHRPS 296
S ++ + + + K L I+ + L P+
Sbjct: 336 SIRDGL--------ATWDNWK----HVNCDKLTTII-------ESSLNVLE-------PA 369
Query: 297 NCKDQYKMSVSISNECDQHMECHTCNECDSKHNDCQSLWDHVFSEHKNMLAFSKPDDSEN 356
+ + VF P +
Sbjct: 370 EYRKMFDRLS-------------------------------VF-----------PPSA-- 385
Query: 357 KI-SKVAEKQYWKD-VEEKCRIIVEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVC 414
I + + W D ++ ++V +Y SL++ + +I + +
Sbjct: 386 HIPTILLSL-IWFDVIKSDVMVVVNKLHKY------SLVEK-QPKESTISIPSIYLELKV 437
Query: 415 ELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEK------VYSHRNRLRYHISTV-HENKWK 467
+L Y +H+ S+V H F D YSH + +H+ + H +
Sbjct: 438 KLENEYALHR-SIVDHYNIPK--TFDSDDLIPPYLDQYFYSH---IGHHLKNIEHPERM- 490
Query: 468 SAACDICGRVFLD 480
+ VFLD
Sbjct: 491 ----TLFRMVFLD 499
Score = 47.9 bits (113), Expect = 8e-06
Identities = 80/605 (13%), Positives = 164/605 (27%), Gaps = 174/605 (28%)
Query: 4 YHCEFHFDVESCAVS-RLQDITFPCEE-------CKELCVLSKYCIKHKDCSKAMSTPAP 55
+H H D E+ + +DI E+ CK++ + K + ++ + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 56 SSES------VCTEHSNLFPK--------------------CHSCQKCEESFDNC-NNLW 88
S + + ++ + K + + L+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 89 S--HMFIKHENSDFVCNLCPPDSKIMIKYAHLLVRHMKQ--CHTM-----QVHIPAVYKN 139
+ +F K+ N+ + ++ A L +R K + V +
Sbjct: 121 NDNQVFAKY-------NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 140 FRSVTSFTMN----NITQYKCPDCPAILQTFKNLKCHLDI-HSGEKDFSCHINSNLSE-- 192
++ N+ P+ +L+ + L +D + D S +I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 193 -HIRMHHTEEKKYIC-----EVCGTSFLTWSSLNSHKYSHDDRKFSC------SHCGNSY 240
+R + C V W++ N SC +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAK--AWNAFN----------LSCKILLTTRFKQVTD 279
Query: 241 KNPIFLKRHFRESHLKHSKSNPEQYAVKSLQDIMYWCNVCSQRCYL-SATCSIHRPSNCK 299
H H + + E ++ + + Q L + + P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDE-----VKSLLLKYLDCRPQD--LPREVLTTN-P---- 327
Query: 300 DQYKMSVSISNECDQHMECHTCNECDSKHNDCQSLWDHVFSEHKNMLAFSKPDDSENKIS 359
+SI E + N W HV + + + S N +
Sbjct: 328 ----RRLSIIAESIRDGLATWDN------------WKHVNCDKLTTII----ESSLNVLE 367
Query: 360 KVAEKQYWKDVEEKCRIIVEDTMRYQCPHCPS-LLKTFWTLKEHFNIHTSEKKYVCELCG 418
++ + + H P+ LL W F++ S+ V
Sbjct: 368 PAEYRKMFDR----LSVFPPSA------HIPTILLSLIW-----FDVIKSDVMVVVNKL- 411
Query: 419 AYFIHKSSLVAHTTTHSNVKFKCDFCEKVYS-HRNRLRYHIS-----TVHENKWKSAACD 472
HK SLV + E S L + +H
Sbjct: 412 ----HKYSLV-----------EKQPKESTISIPSIYLELKVKLENEYALH---------- 446
Query: 473 ICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKCSLMTTSP 532
R +D N+ K P++ + Y + ++ H KN + + +L
Sbjct: 447 ---RSIVDHYNIPKTFDSDDLIPPYLDQ-----Y-FYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 533 LSVKF 537
L +F
Sbjct: 498 LDFRF 502
Score = 40.2 bits (93), Expect = 0.002
Identities = 48/319 (15%), Positives = 98/319 (30%), Gaps = 100/319 (31%)
Query: 9 HFDVESCAV---SRLQDIT-------------------FPCEECKELCVLSKYC-IKHKD 45
F++ SC + +R + +T +E K L L KY + +D
Sbjct: 261 AFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQD 317
Query: 46 CSKAMSTPAPSSESVCTEHSNLFPKCHSCQKCEESFDNCNNLWSHMF---IKHENSDFVC 102
+ + T P S+ E S + ++DN W H+ + +
Sbjct: 318 LPREVLTTNPRRLSIIAE---------SIRDGLATWDN----WKHVNCDKLTTIIESSLN 364
Query: 103 NLCPPDSKIMIKYAHLLVRHMKQCHTMQ--VHIPAVYKNFRSVTSFTMNNITQYKCPDCP 160
L P + + + + HIP + S ++ + D
Sbjct: 365 VLEPAEYR----------KMFDRLSVFPPSAHIPT------ILLSLIWFDVIKS---DVM 405
Query: 161 AILQTFKN---LKCHLD-----IHSGEKDFSCHINSNLSEHIRM--HHTEEKKYICEVCG 210
++ ++ I S + + + + H + H+ K +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF----DS 461
Query: 211 TSFLTWSSLNSHKYSHDDRKFSCSHCGNSYKNP-----------IFLKRHFRESHLKHSK 259
+ + D+ F SH G+ KN +FL F E ++H
Sbjct: 462 DDLIP---------PYLDQYF-YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 260 S--NPEQYAVKSLQDIMYW 276
+ N + +LQ + ++
Sbjct: 512 TAWNASGSILNTLQQLKFY 530
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C++C R F +++K+H H+ E+P+ C LC A+ R L+RH +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 40.2 bits (95), Expect = 6e-05
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 410 KKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVH 462
+ +VCE+C F + L H +H+N K + C C + ++ R+ L H +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 38.6 bits (91), Expect = 2e-04
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 384 YQCPHCPSLLKTFWT---LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAH 430
+ C C + F LK H+ HT+EK Y C LC F + L+ H
Sbjct: 3 FVCEVCT---RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.6 bits (78), Expect = 0.013
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHK 223
+L H R H T EK Y C +C +F L H
Sbjct: 15 QEHLKRHYRSH-TNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 30.1 bits (69), Expect = 0.19
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 202 KKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSHCGNSYKNPIFLKRHFRESH 254
+ ++CEVC +F L H SH + K + C C ++ L RH ++ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 495 RPFVCKLCGIAYKWRKNLVRHQ 516
R FVC++C A+ +++L RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 175 IHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICEVCGTSF 213
S K + C +L+ HI+ HT E+ + C+V +
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 40.3 bits (95), Expect = 5e-05
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHT-TTHSNVK-FKCDFCEKVYS 449
+ + K Y+C+ CG F L H H++ + KC S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 34.9 bits (81), Expect = 0.004
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 471 CDICGRVFLDSKNMKKHA-AVHSTERPFVCKLCG 503
C CG+ F ++ H VH++ERP C++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
Score = 34.1 bits (79), Expect = 0.008
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSH-KYSHDDRK-FSCSHCGNSYKN 242
+ K YIC+ CG F LN H K H + C + +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 32.2 bits (74), Expect = 0.031
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S +P++C+ CG + +L H K
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK 33
Score = 31.4 bits (72), Expect = 0.069
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 429 AHTTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVF 478
+ ++ S K + C C K +S + L HI VH ++ + C +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE-RPHKCQVWVSGP 51
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T E ++C CG F HK++L+ H H+ +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E PF+C CG + + NL+ HQK
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
Score = 30.9 bits (71), Expect = 0.064
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T E +IC CG F ++L H+ H
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 30.5 bits (70), Expect = 0.11
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GE F C +NL H ++ HT E+
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERPSGP 43
Score = 27.1 bits (61), Expect = 1.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+VF N+ H +H+ ERP
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 25.5 bits (57), Expect = 7.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
+ C +C + NL H IH+GE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 39.8 bits (94), Expect = 5e-05
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+ + EK Y C CG FI KS L+ H TH+ V
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 32.9 bits (76), Expect = 0.015
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+P+ C CG A+ W+ L+ H++
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK Y C CG +F+ S L H+ +H
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGEK + C+ S L H R H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSGPSS 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 EHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T E+ Y C CG F KS+L+ H H+ K
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.019
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + ER + C CG A+ + L+ HQ+
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQR 33
Score = 30.5 bits (70), Expect = 0.087
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 192 EHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T E+ Y C CG +F S+L H+ H K S
Sbjct: 2 SSGSSG-TGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.34
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GE+ + C S L H R+ HT EK
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
+ T EK + C++CG F +S L H+ H+ K
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.011
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK + C++CG SF S LN H H
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 32.8 bits (76), Expect = 0.017
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+PF C +CG ++ R L RH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
Score = 30.5 bits (70), Expect = 0.095
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICE 207
+GEK F C I S L+ H + HT EK
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.49
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
CDICG+ F + +H+ VH+ E+P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 39.4 bits (93), Expect = 7e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
EK Y CE+CG F H +L +H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
EK Y CE+CGT F +L SH H
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 29.8 bits (68), Expect = 0.18
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKY 204
GEK + C I L H+R+ HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSGPS 40
Score = 29.4 bits (67), Expect = 0.27
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPF 497
C+ICG F + +K H +H+ P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 28.6 bits (65), Expect = 0.44
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ E+P+ C++CG ++ + L H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 27.5 bits (62), Expect = 1.3
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 429 AHTTTHSNVK-FKCDFCEKVYSHRNRLRYHI 458
+ + K + C+ C + H L+ H+
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 27.1 bits (61), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFS 183
Y C C + + LK HL IH+G S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 26.3 bits (59), Expect = 3.2
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKY 412
Y C C + + TLK H IHT
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 8e-05
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F +SSL H THS K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.071
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + E+P+ C CG A++ R +L HQ
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ 32
Score = 30.6 bits (70), Expect = 0.086
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C CG +F SSL H+ +H
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 28.7 bits (65), Expect = 0.45
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C+ S+L+ H H+ EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGP 43
Score = 25.6 bits (57), Expect = 5.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F ++ H A HS E+P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 25.2 bits (56), Expect = 9.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC +C + +L H HSGEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 8e-05
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C++C F + SSL H H+ K
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.019
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C+VC SF SSL H+ H
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 30.9 bits (71), Expect = 0.076
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C +C ++++ +L HQ+
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
Score = 29.4 bits (67), Expect = 0.23
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C S+L+ H R+ HT EK
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
CD+C + F ++ H +H+ E+P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 6.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC C + +L H IH+GEK
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 39.5 bits (92), Expect = 8e-05
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLC 502
K AC+ICG++F D ++ +H HS E+P+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 0.002
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHC 236
K+ CE+CG F LN HK SH ++ +S
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.3 bits (68), Expect = 0.14
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCDFC 444
+ K+ CE+CG F L H +HS K +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.1 bits (65), Expect = 0.34
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 383 RYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELC 417
+ C C + + + L H H+ EK Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.0 bits (62), Expect = 0.97
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 153 QYKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
Q C C I + +L H HSGEK +S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 26.4 bits (58), Expect = 3.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 491 HSTERPFVCKLCGIAYKWRKNLVRHQ 516
T + C++CG ++ +L RH+
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHK 32
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 9e-05
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 401 EHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T E+ Y C CG FI KS+L H H K
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.049
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + ER + C CG A+ + L HQ+
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQR 33
Score = 30.6 bits (70), Expect = 0.088
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 192 EHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T E+ Y C CG +F+ S+L+ H+ H K S
Sbjct: 2 SSGSSG-TGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.48
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GE+ + C S LS H R+ H EK
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 39.1 bits (92), Expect = 9e-05
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
EK Y C+ CG F K SL+ H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 31.4 bits (72), Expect = 0.050
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
EK Y C+ CG +F SL H H
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 30.2 bits (69), Expect = 0.12
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ E+P+ C CG A+ + +L+ H +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 28.3 bits (64), Expect = 0.61
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKY 204
GEK + C +L HIR+ HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSGPS 40
Score = 25.2 bits (56), Expect = 8.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPF 497
CD CG+ F ++ H VH+ P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 9e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y+C CG F +S+L+ H H+ K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P++C CG A+ R NL++HQK
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
Score = 31.3 bits (72), Expect = 0.051
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK YIC CG +F S+L H+ H +K S
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.13
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C I SNL +H ++ HT++K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQKPSGPS 44
Score = 26.3 bits (59), Expect = 3.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F N+ KH +H+ ++P
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 9e-05
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y CE CG FI + L H H+ K
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.032
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y CE CG F+ L +H H
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 31.7 bits (73), Expect = 0.041
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + E+P+ C+ CG + R++L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH 32
Score = 29.8 bits (68), Expect = 0.21
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C +L H + HT EK
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F+ +++ H VH+ E+P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 8.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC +C ++L H +H+GEK
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T E+ Y+C +CG F +S+L+ H H+ K
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + ERP++C +CG A+ R NL++HQK
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
Score = 32.1 bits (74), Expect = 0.029
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T E+ YIC VCG +F S+L H+ H K S
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GE+ + C SNL +H ++ HT EK
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C +CG+ F D N+ KH +H+ E+P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK + C C F KS+L+ H TH+ K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.030
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+PF C C A+ + NL+ HQ+
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33
Score = 30.1 bits (69), Expect = 0.15
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCS 234
T EK + C C +F T S+L H+ +H K S
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 30.1 bits (69), Expect = 0.16
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK F C SNL H R HT EK
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPSGPS 44
Score = 25.1 bits (56), Expect = 9.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C C + F N+ H H+ E+P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 39.3 bits (91), Expect = 1e-04
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 383 RYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+Y C C K LK+H HT + Y C C F K +L H + ++ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 37.4 bits (86), Expect = 5e-04
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
C+ CG +KKH H+ RP+ C C ++K + NL +H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.4 bits (73), Expect = 0.030
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 203 KYICEVCGTSFLTWSSLNSHKYSH-DDRKFSCSHCGNSYKNPIFLKRHFR 251
KYICE CG S L H +H D R + C++C S+K L +H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.8 bits (69), Expect = 0.12
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 187 NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK 230
S L +HIR H T+ + Y C C SF T +L H S K
Sbjct: 14 PSMLKKHIRTH-TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 29.7 bits (66), Expect = 0.29
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 438 KFKCDFCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSKNMKKHAAVHSTER 495
K+ C+ C + L+ HI T + C C F N+ KH + +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT--HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 29.7 bits (66), Expect = 0.32
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 153 QYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKK 203
+Y C +C + LK H+ H+ + + C NL++H++ KK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS-KAHSKK 57
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C++C F H +SL H HS K
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.038
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C+VC +F +SL H+ H K S
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.11
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + E+P+ C +C A+ +L +HQ
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ 32
Score = 29.8 bits (68), Expect = 0.19
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C +++L++H R+ H+ EK
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
CD+C + F ++ +H VHS E+P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK YVC+ CG F + LV H H+ K
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+P+VC CG A+ LVRHQ+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
Score = 31.7 bits (73), Expect = 0.044
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
+ EK Y+C+ CG +F + L H+ H K S
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.10
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGEK + C +++ L H R+ HT EK
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
CD CG+ F S + +H +H+ E+P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T +K + C CG F K +LV H H+ K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.5 bits (75), Expect = 0.018
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + ++PF C CG +++ + NLV HQ+
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33
Score = 29.8 bits (68), Expect = 0.16
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+G+K F C NL H R+ HT EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPS 43
Score = 29.4 bits (67), Expect = 0.22
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T +K + C CG SF +L +H+ H
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 25.6 bits (57), Expect = 5.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F N+ H +H+ E+
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 25.2 bits (56), Expect = 7.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
++C C + NL H IH+GEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 25.2 bits (56), Expect = 7.1
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVC 414
++C HC K+F L H IHT EK
Sbjct: 13 FECTHCG---KSFRAKGNLVTHQRIHTGEKSGPS 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y CE CG FIH S L H H+ K
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C+ CG A+ L HQ+
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
Score = 31.3 bits (72), Expect = 0.052
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 193 HIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y CE CG +F+ S L H+ H
Sbjct: 3 SGSSG-TGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.0 bits (71), Expect = 0.068
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK ++C +S L EH R+ HT EK
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 3.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F+ +++H +H+ E+P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F KS L H H+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 31.7 bits (73), Expect = 0.044
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG ++ W+ L HQK
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
Score = 31.4 bits (72), Expect = 0.059
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C CG SF S L H+ H
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 28.3 bits (64), Expect = 0.64
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C S L H + HT E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERHSGP 43
Score = 26.7 bits (60), Expect = 2.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC DC L+ H H+GE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 25.6 bits (57), Expect = 5.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F ++ H H+ ER
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T K Y C C F KS L+ H +H+ VK
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 31.7 bits (73), Expect = 0.041
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + +P+ C C + + L+ HQ+
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
Score = 29.8 bits (68), Expect = 0.19
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T K Y C C +F S L H+ SH
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 28.7 bits (65), Expect = 0.46
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+G K + C + S L H R HT K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C +CG F H+ SL H HS K
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 31.7 bits (73), Expect = 0.045
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C VCG +F SL+ H+ H +K S
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C +CG A+ R++L HQ+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
Score = 28.2 bits (64), Expect = 0.60
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C +LS H R+ H+ +K
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKPSGPS 44
Score = 26.3 bits (59), Expect = 3.7
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C +CG+ F +++ H +HS ++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ T ++ Y C CG F KSSL+ H +H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 32.1 bits (74), Expect = 0.028
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + +RP+ C CG A+K + +L+ H++
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
Score = 31.4 bits (72), Expect = 0.050
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T ++ Y C CG +F T SSL H+ SH
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 28.7 bits (65), Expect = 0.51
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+G++ + C S+L H R HT EK
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGP 43
Score = 25.6 bits (57), Expect = 6.4
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCK 500
C CG+ F ++ H H+ E+P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 9.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
Y+C +C +T +L CH H+GEK
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK Y C CG F KS L AH TH+ K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK Y C CG +F S L++H+ +H
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 29.8 bits (68), Expect = 0.19
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICE 207
SGEK + C+ S LS H R HT EK
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.21
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+P+ C CG + + L HQ+
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
Score = 25.2 bits (56), Expect = 8.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F + H H+ E+P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ T K YVC CG F KS L+ HT TH
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 32.1 bits (74), Expect = 0.029
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + +P+VC CG A++ + L+ H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT 32
Score = 30.9 bits (71), Expect = 0.068
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T K Y+C CG +F + S L H +H
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 28.2 bits (64), Expect = 0.56
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+G K + C+ S L H R HT E
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSS 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F +S+L H H+ K
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.019
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A+ R NL HQK
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
Score = 32.5 bits (75), Expect = 0.020
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG +F S+L +H+ H K S
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.093
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C SNL H ++ HT EK
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F D N+ H +H+ E+P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 8.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
Y+C +C NL H IH+GEK
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F +SSL H H+ K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 31.7 bits (73), Expect = 0.043
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A+ R +L HQ
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
Score = 31.3 bits (72), Expect = 0.055
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG +F SSL +H+ H +K S
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.28
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ + S+L+ H + HT +K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKPSGPS 44
Score = 26.0 bits (58), Expect = 4.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCK 500
C+ CG+ F ++ H A+H+ ++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
+ + EK + CE CG F S +H +HS K
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.025
Identities = 14/46 (30%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICEVCG 210
SGEK F C NS H R H+ EK G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEKPSGPS-SG 46
Score = 32.1 bits (74), Expect = 0.026
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+PF C+ CG + HQ+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33
Score = 32.1 bits (74), Expect = 0.031
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
+ EK + CE CG F T S SH+ SH K S G
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCKLCG 503
C+ CG+ F + H HS E+P G
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 25.6 bits (57), Expect = 6.5
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
+KC +C T H HSGEK
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 25.2 bits (56), Expect = 8.7
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCG 418
++C C T H H+ EK G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+ + EK + C+ CG F + S+L H H K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 32.2 bits (74), Expect = 0.030
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
+ EK + C+ CG +F S+L H+ H K S G
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG 46
Score = 31.8 bits (73), Expect = 0.043
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ S E+ C CG + + L HQ
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ 32
Score = 27.2 bits (61), Expect = 1.7
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
SGEK +C S L H R+ H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKCSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.2 bits (90), Expect = 2e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C C F KS+L+ H TH+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 31.7 bits (73), Expect = 0.039
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C C A+ + NL+ HQ+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
Score = 30.5 bits (70), Expect = 0.11
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C C +F T S+L H+ +H
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 28.6 bits (65), Expect = 0.49
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C+ SNL H R HT E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSS 43
Score = 25.9 bits (58), Expect = 5.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
Y+C +C T NL H H+GE S
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 25.5 bits (57), Expect = 5.3
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ C + F N+ H H+ E
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
EK Y CE CGA F+ + L AH H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.5 bits (75), Expect = 0.019
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
EK Y CE CG F+ + L +H H
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 29.0 bits (66), Expect = 0.33
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ E+P+ C+ CG + +L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 28.3 bits (64), Expect = 0.56
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKY 204
GEK + C ++L H+ + HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSGPS 40
Score = 26.3 bits (59), Expect = 2.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPF 497
C+ CG F+ +++ H +H+ P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 26.3 bits (59), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEK 180
YKC C A +L+ H+ IH+G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSG 38
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK + C CG F +S+L H H+ K
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK + C CG F S+LN H H K S
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 31.0 bits (71), Expect = 0.064
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+PF C CG + R L H K
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33
Score = 29.0 bits (66), Expect = 0.36
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK F C S L+ H ++ HT EK
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEKPSGP 43
Score = 25.6 bits (57), Expect = 6.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F + H +H+ E+P
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T K + C CG F KS+L H H+ K
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.054
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + + F C CG A+ + L HQK
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
Score = 30.2 bits (69), Expect = 0.15
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+G K F C S LS H ++ HT EK
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 191 SEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T K + C CG +F S+L+ H+ H K S
Sbjct: 1 GSSGSSG-TGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + E+ Y C CG F S L+ H H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S ERP+ C CG + +L+ H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 31.7 bits (73), Expect = 0.043
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCS 234
+ E+ Y C CG +F S L H H K S
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGE+ + C+ +S+L EH++ H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGP 43
Score = 26.7 bits (60), Expect = 2.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F ++ +H H E+
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.6 bits (57), Expect = 5.9
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
Y C +C +L HL H EK
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+ T E Y C CG F K LV+H THS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 34.0 bits (79), Expect = 0.006
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E P+ C CG + + LV HQK
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQK 33
Score = 29.0 bits (66), Expect = 0.39
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T E Y C CG F L SH+ +H
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 25.2 bits (56), Expect = 7.3
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GE + C L H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSGPSS 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C+ CG F S L+ H HS K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ CK CG +++W L++HQ+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
Score = 31.0 bits (71), Expect = 0.080
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C+ CG SF S L H+ H
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 30.6 bits (70), Expect = 0.094
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK ++C S L +H R+ H+ EK
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.76
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCK 500
C CG+ F + + KH VHS E+P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.5
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCE 415
Y C C K+F L +H +H+ EK
Sbjct: 13 YNCKECG---KSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 7.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
Y C +C + L H +HSGEK
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F KS L H +H+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 31.3 bits (72), Expect = 0.056
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C CG +F S L+ H+ SH
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A+ + L HQ+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
Score = 28.6 bits (65), Expect = 0.50
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
+GEK + C S L H + HT E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGP 43
Score = 25.2 bits (56), Expect = 7.3
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC DC L H H+GE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 25.2 bits (56), Expect = 8.6
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F + H H+ ER
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ EK Y C CG F KS L+ H THS K
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.092
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A+ + L+ H +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C S L H+R H+ EK
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.17
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
EK Y C CG +F + S L H +H
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+ T EK + C+ CG F SL H +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 36.8 bits (86), Expect = 6e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+PF CK CG+ + W +L +H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 32.6 bits (75), Expect = 0.021
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK + C+ CG +F SL H SH
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 27.9 bits (63), Expect = 0.75
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK F C + +L +H+R H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGP 43
Score = 27.9 bits (63), Expect = 0.99
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG F S ++ KH H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T K Y+C CG F SSL H H+ K
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.022
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T K Y+C CG +F +SSL +H+ H K S
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.11
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + +P++C CG A+ +L HQ
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
Score = 29.8 bits (68), Expect = 0.20
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+G K + C+ + S+L+ H + HT EK
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F ++ H +H+ E+P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 7.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
Y C +C + +L H IH+GEK
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C+ CG F L+ H HS K
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.014
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+ + CK CG ++ L++H++
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
Score = 30.6 bits (70), Expect = 0.11
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK ++C L +H R+ H+ EK
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.19
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 193 HIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C+ CG SF L H+ H
Sbjct: 3 SGSSG-TGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 26.0 bits (58), Expect = 4.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F + + KH +HS E+P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK C CG F KS L+ H TH + K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 34.5 bits (80), Expect = 0.005
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P C CG A+ W+ L+ HQ+
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
Score = 32.1 bits (74), Expect = 0.029
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCS 234
T EK C CG +F S L H+ +H D K S
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK C S L H R H ++K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGP 43
Score = 25.6 bits (57), Expect = 5.8
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F + H H ++
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ T EK Y C +CG F KS L H H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 32.1 bits (74), Expect = 0.030
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C +CG SF S L+ H+ H K S
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.15
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C +CG ++ + L HQ+
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33
Score = 29.0 bits (66), Expect = 0.39
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
+GEK + C I S L H ++ HT EK
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKPSGP 43
Score = 26.0 bits (58), Expect = 4.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCK 500
C ICG+ F + H +H+ E+P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ T EK Y C CG FI KS L H H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 32.1 bits (74), Expect = 0.025
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG SF+ S L+ H+ H S
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG ++ + L HQ+
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33
Score = 27.9 bits (63), Expect = 0.84
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C S L H R+ HT E
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENPSGP 43
Score = 25.2 bits (56), Expect = 7.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F+ + H +H+ E P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F H S L H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.038
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG ++ L RHQ+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
Score = 30.6 bits (70), Expect = 0.086
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C CG F S L+ H+ H
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 30.6 bits (70), Expect = 0.094
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ NS LS H R+ HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH 185
YKC +C + + L H IH+GEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 4.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+VF + + +H +H+ E+P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
+ + EK Y C CG + + L H H+ K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+P+ C CG YK R +L HQ+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33
Score = 30.2 bits (69), Expect = 0.14
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK Y C CG + L+ H+ H
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 29.0 bits (66), Expect = 0.36
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGEK + C +L H R+ HT EK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGEKLSGP 43
Score = 25.6 bits (57), Expect = 6.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ + ++ H VH+ E+
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ T E Y C CG F K L++H TH
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 32.1 bits (74), Expect = 0.027
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E P+ C CG A+ + L+ HQ+
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR 33
Score = 29.8 bits (68), Expect = 0.19
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T E Y C CG +F L SH+ +H K S
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.45
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GE + CH L H R H EK
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ +K + C C F SSL H H+ K
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+G+K F C+ +S+L+ H R+ HT EK
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.21
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + ++ F C C + +L HQ+
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
Score = 29.8 bits (68), Expect = 0.22
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+K + C C +F SSL H+ H
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 25.2 bits (56), Expect = 8.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ C + F S ++ H +H+ E+P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 401 EHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK + CE CG F S L +H H+ K
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.042
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+PF C+ CG + +L HQ+
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
Score = 30.6 bits (70), Expect = 0.091
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGEK F C NS+L H R+ HT EK
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.30
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK + CE CG F S L+SH+ H
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 25.6 bits (57), Expect = 5.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F + ++ H VH+ E+P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ EK Y C++CG F S L H H+ K
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.035
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
EK Y C+VCG F S L +H+ H
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 30.2 bits (69), Expect = 0.15
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
GEK + C + +S+L H R+ HT EK
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.20
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ E+ + C +CG + +L HQ
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
Score = 27.9 bits (63), Expect = 0.80
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
CD+CG+ F S +++ H VH+ E+P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y+C CG FI KS L H H+ K
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.025
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P++C CG ++ + +L RH++
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
Score = 30.9 bits (71), Expect = 0.066
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK YIC CG SF+ S LN H+ H
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 29.8 bits (68), Expect = 0.19
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ S+L+ H R+ HT EK
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.4
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F+ ++ +H +H+ E+P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK Y CE CG + + +L H H K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+P+ C+ CG Y R NL HQ+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
Score = 32.5 bits (75), Expect = 0.022
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 193 HIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK Y CE CG + +L+ H+ H
Sbjct: 3 SGSSG-SVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 30.9 bits (71), Expect = 0.070
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
S EK + C NL H R+ H EK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEKTSGP 43
Score = 26.7 bits (60), Expect = 2.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ + N+ H VH E+
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 25.5 bits (57), Expect = 5.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC DC NL H +H GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F S L H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.036
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A+ L RHQ+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
Score = 30.9 bits (71), Expect = 0.074
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ S L+ H R+ HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG +F S L H+ H K S
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 4.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F + + +H +H+ E+P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ EK Y C CG F L H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 32.9 bits (76), Expect = 0.015
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ E+P+ C CG ++ L +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
Score = 32.1 bits (74), Expect = 0.031
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
EK Y C CG SF L H +H
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 28.7 bits (65), Expect = 0.44
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
GEK + C + L++H HT EK
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKPSGP 43
Score = 26.0 bits (58), Expect = 4.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F S + +H H+ E+P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 EHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C++CG F S LV H + HS +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 34.0 bits (79), Expect = 0.006
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C++CG A++ +LV+H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
Score = 30.9 bits (71), Expect = 0.080
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 192 EHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C+VCG +F S L H H
Sbjct: 2 SSGSSG-TGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 30.6 bits (70), Expect = 0.092
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C ++S+L +H + H+ E+
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERPSGP 43
Score = 26.7 bits (60), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C +CG+ F S ++ +H +VHS ERP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 25.2 bits (56), Expect = 9.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC C + +L H +HSGE+
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F SS H H+ +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 31.0 bits (71), Expect = 0.065
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG +F SS H+ H ++ S
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 31.0 bits (71), Expect = 0.068
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A+ + +HQ+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C NS+ ++H R+ HT ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRPSGPS 44
Score = 27.2 bits (61), Expect = 1.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F D+ + +H +H+ +RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y CE CG + K +L H H+ +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 33.7 bits (78), Expect = 0.009
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C+ CG Y + NL HQK
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
Score = 31.3 bits (72), Expect = 0.049
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y CE CG + + +L+ H+ H
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.4 bits (67), Expect = 0.27
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C NL H ++ HT E+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGERPSGP 43
Score = 26.7 bits (60), Expect = 2.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ + N+ H VH+ ERP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 26.7 bits (60), Expect = 2.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH 185
YKC C + NL H +H+GE+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK + C CG F S L H H+ K
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.023
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + E+PF C CG ++ L HQ
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQ 32
Score = 30.9 bits (71), Expect = 0.080
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK + C CG SF S L +H+ H K S
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 30.5 bits (70), Expect = 0.087
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK F C I+S L+ H R+ HT EK
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 3.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F S + H +H+ E+P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F S+L H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.030
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A++ NL HQ
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
Score = 31.7 bits (73), Expect = 0.041
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C CG +F S+L +H+ H
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 30.9 bits (71), Expect = 0.075
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ +SNL+ H + HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 4.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC +C + NL H IH+GEK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 4.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F N+ H +H+ E+P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.1
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCE 415
Y+C C + L H IHT EK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 36.9 bits (86), Expect = 5e-04
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
E Y+C CG F + SL H + S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 33.4 bits (77), Expect = 0.010
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ E P++C CG ++ R +L HQ+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 31.5 bits (72), Expect = 0.040
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
E Y+C CG SF SL H+ S
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 25.7 bits (57), Expect = 5.0
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPF 497
C CG+ F ++ H S P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK + CE CG F S L +H H+ K
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.067
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+PF C+ CG + L HQ+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
Score = 30.6 bits (70), Expect = 0.088
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYIC 206
SGEK F C NS L H R+ HT EK
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.100
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK + CE CG F S L+SH+ H
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 26.3 bits (59), Expect = 3.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F + + H VH+ E+P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C++C F K+ L H TH+ K
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.022
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ CK+C A+ + +L +HQK
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
Score = 29.8 bits (68), Expect = 0.21
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICE 207
+GEK + C + ++L++H + HT EK
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.46
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C+VC +F + L H+ +H
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 26.3 bits (59), Expect = 2.9
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCK 500
C +C + F ++ +H H+ E+P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 4.2
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCE 415
Y+C C K F L +H HT EK
Sbjct: 13 YECKVCS---KAFTQKAHLAQHQKTHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T K Y C CG F S L H H+ K
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + +P+ C CG A+ L RHQ
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+G K + C+ S L+ H R+ HT EK
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T K Y C CG +F S L H+ H K S
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 26.0 bits (58), Expect = 4.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F + + +H VH+ E+P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ E+ + C CG +F+ S+ + H H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 36.0 bits (84), Expect = 0.001
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ ER C CG + N ++H++
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
Score = 32.1 bits (74), Expect = 0.024
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 195 RMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
E+ + C CG FL S+ H+ H
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 29.0 bits (66), Expect = 0.38
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
GE+ C SN +H R+ HT EK
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ FL + N +H +H+ E+P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 3.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
++C DC N H IH+GEK
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-04
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK + C CG F S L+ H H+
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 32.1 bits (74), Expect = 0.027
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + E+P C+ CG ++ + L+ HQ
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQ 32
Score = 30.2 bits (69), Expect = 0.15
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK + C CG SF S L H+ H S
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 29.8 bits (68), Expect = 0.20
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK C NS L H R+ HT E
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENPSGP 43
Score = 25.2 bits (56), Expect = 8.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F + + H +H+ E P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 401 EHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
+ T EK Y C +CG F+ + L H H+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.9 bits (76), Expect = 0.015
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C +CG A+ +L +H +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
Score = 32.5 bits (75), Expect = 0.018
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 192 EHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C VCG +F+ + LN H H S
Sbjct: 2 SSGSSG-TGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 31.3 bits (72), Expect = 0.052
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKYICE 207
+GEK +SC++ +++L++H+R+ HT+E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQETLSGPS 44
Score = 26.3 bits (59), Expect = 3.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCK 500
C++CG+ F+ S ++ +H VH+ E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F K++L H H+ K
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.023
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG A+ + NL +HQ+
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
Score = 30.6 bits (70), Expect = 0.086
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG +F ++L H+ H K S
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.11
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C +NL++H R+ HT EK
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGEKPSGP 43
Score = 25.9 bits (58), Expect = 4.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F N+ +H +H+ E+P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.7 bits (86), Expect = 7e-04
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 404 NIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + E Y C CG F K L++H TH+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.3 bits (72), Expect = 0.048
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 491 HSTERPFVCKLCGIAYKWRKNLVRHQK 517
S E P+ C CG A+ + L+ HQ+
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQR 31
Score = 28.2 bits (64), Expect = 0.60
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ E Y C CG +F L SH+ +H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 27.5 bits (62), Expect = 1.1
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 8/39 (20%)
Query: 175 IHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGE + C L H R H E
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRT-HAGESGPSS 41
Score = 24.8 bits (55), Expect = 9.4
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F + H H+ E
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ Y C C F K L+ H H+ K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 31.0 bits (71), Expect = 0.071
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + P+ C C ++ + L+ HQ+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR 33
Score = 29.4 bits (67), Expect = 0.23
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+G + C L H RM HT EK
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREKPSGP 43
Score = 28.7 bits (65), Expect = 0.42
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
Y C C SF L H+ H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 28.3 bits (64), Expect = 0.65
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 429 AHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
+ ++ + V +KC CEK +S + RL H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 25.6 bits (57), Expect = 6.4
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C C + F + H +H+ E+P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 25.2 bits (56), Expect = 7.5
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
YKC C L H +H+ EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F S LV H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.034
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG + +LVRH+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
Score = 31.3 bits (72), Expect = 0.052
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ NS+L H + HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKPSGPS 44
Score = 30.1 bits (69), Expect = 0.14
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG F S L H+ H K S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 25.1 bits (56), Expect = 9.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+VF + ++ +H +H+ E+P
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK+Y C CG F S L H H+ K
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.053
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ NS LS+H ++ HT EK
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.067
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+ + C CG + L +HQK
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
Score = 30.6 bits (70), Expect = 0.10
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK+Y C CG F S L+ H+ H K S
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 5.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+VF + + +H +H+ E+P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSCH 185
YKC +C + L H IH+GEK
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK + C CG F L H H+ K
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.011
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK + C CG +F LN H+ H K S
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.035
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+PF C CG A+ L +H++
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
Score = 30.2 bits (69), Expect = 0.15
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK F C + L++H R+ HT EK
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F D + +H +H+ E+P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 36.4 bits (85), Expect = 8e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAH 430
+ T +K Y C CG FI +SL+ H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 32.5 bits (75), Expect = 0.021
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+G+K + C N++L H R +HT EK
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 31.4 bits (72), Expect = 0.047
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQKN 518
+ + ++P+ C CG A+ +L+RH +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRY 34
Score = 28.3 bits (64), Expect = 0.62
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSH 222
T +K Y C CG +F+ +SL H
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 8e-04
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + E+ + C CG F +S L H HS K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 33.3 bits (77), Expect = 0.012
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S ERPF C CG + R +L H +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 30.6 bits (70), Expect = 0.094
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ E+ + C CG F S L H H
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.2 bits (69), Expect = 0.15
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGE+ F C+ S+L+ H+R+ H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKSSGP 43
Score = 26.0 bits (58), Expect = 3.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F ++ H +HS E+
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.1 bits (84), Expect = 9e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+ EK Y C C F + LV H H+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 33.1 bits (76), Expect = 0.011
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 488 AAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
++ S E+P+ C C + LV+HQK
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQK 31
Score = 28.8 bits (65), Expect = 0.39
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK Y C C +F + L H+ H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK Y C CG F S L H H+ K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.051
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGEK + C+ NS+L+ H R+ HT EK
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.091
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+P+ C CG + +L H +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
Score = 29.8 bits (68), Expect = 0.18
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK Y C CG F S L +H H
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 25.1 bits (56), Expect = 8.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+VF + ++ H +H+ E+P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F S L H H+ VK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 32.5 bits (75), Expect = 0.022
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG + +L HQ+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33
Score = 31.3 bits (72), Expect = 0.056
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ NS+L+ H R+ HT K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKPSGPS 44
Score = 29.0 bits (66), Expect = 0.36
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C CG F S L +H+ H
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 25.6 bits (57), Expect = 5.3
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+VF + ++ H +H+ +P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T E+ + C CG FI + L+ H H+ K
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.060
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + ERP C CG ++ +L++HQ
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQ 32
Score = 29.4 bits (67), Expect = 0.27
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T E+ + C CG SF+ + L H+ H K S
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.34
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GE+ C+ +++L +H R+ HT EK
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 9.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+ F+ S ++ +H +H+ E+P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 405 IHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ EK + C C F KS L+ H TH+ K
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 29.0 bits (66), Expect = 0.30
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCS 234
+ EK + C C +F + S L H+ +H + K S
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 29.0 bits (66), Expect = 0.38
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 489 AVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+PF C C A+ + L+ HQ+
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 28.7 bits (65), Expect = 0.44
Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 175 IHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
SGEK F C S L H + H EEK
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGP 41
Score = 25.2 bits (56), Expect = 7.3
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C C + F + H H+ E+P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.2 bits (56), Expect = 9.1
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
+ C C + L H H+ EK
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 36.9 bits (85), Expect = 0.001
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 398 TLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYH 457
+ + IH ++ C CG FI +S+L T C+ C K L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT------PMCEKCRKDSCQEAALNKD 58
Score = 36.2 bits (83), Expect = 0.002
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 168 NLKCHLDIHSGEKDFSCHINSNLSEHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSHD 227
+ IH G++ C + R + K +CE C ++LN + +
Sbjct: 5 SSGKRQKIHLGDRSQKCS-KCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNES 63
Query: 228 DRK 230
+K
Sbjct: 64 GKK 66
Score = 31.9 bits (72), Expect = 0.068
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 481 SKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
S + K +H +R C CGI + R L R +
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT 39
Score = 27.7 bits (61), Expect = 2.4
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+ K +CE C +++L S K
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKK 66
Score = 27.7 bits (61), Expect = 2.5
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+S C CG +F + S + +C+ C L + +
Sbjct: 17 RSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEG 60
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C+ CG F + L+ H H+ K
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.014
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ CK CG A+ +L++HQ+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
Score = 29.8 bits (68), Expect = 0.19
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK + C ++L +H R+ HT EK
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.23
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C+ CG +F + L H+ H K S
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 7.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ F + ++ +H VH+ E+P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK Y C CG F + L H H+ +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 32.5 bits (75), Expect = 0.023
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+P+ C CG A+ +L H++
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
Score = 31.7 bits (73), Expect = 0.045
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
SGEK + C +++L+EH R+ HT +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRPSGPS 44
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK Y C CG +F + LN H+ H
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ EK + C C F SSL H H K
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.027
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
EK + C C F SSL H+ H
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ E+ + C+ C + + +L HQ
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
Score = 27.9 bits (63), Expect = 1.0
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
GEK + C S+L H + H EK
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKPSGP 43
Score = 26.4 bits (59), Expect = 3.4
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C C F + +++ H VH E+P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 26.4 bits (59), Expect = 3.4
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 429 AHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
+ ++ K +KC C+ +S + LR H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 25.6 bits (57), Expect = 6.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
+KC +C +L+ H ++H GEK
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+ +S K + C CG F KS L H H+ K
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.004
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S+ + C CG + + +L +HQ+
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 31.4 bits (72), Expect = 0.049
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ K + C CG F S LN H+ H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 28.7 bits (65), Expect = 0.50
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
S K CH + S+L++H R+ HT EK
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEKPSGP 43
Score = 25.6 bits (57), Expect = 6.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CGR F ++ +H +H+ E+P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 8.2
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 430 HTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
++ S+ K +C C + ++ ++ L H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F S L H H+ K
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.037
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG ++ +L RHQ
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
Score = 31.3 bits (72), Expect = 0.061
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + CH NS+L+ H + HT EK
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T EK Y C CG F S L H+ H
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + EK + C+ CG F L +H H+ K
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.011
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S E+PF CK CG A++ +L H +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
Score = 32.5 bits (75), Expect = 0.023
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
SGEK F C N +L+ H+R+ HT EK
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.48
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ EK + C+ CG +F L SH H
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T +K Y C CG F S L H H+ K
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.056
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + ++P+ C CG + +L RH+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
Score = 30.6 bits (70), Expect = 0.094
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+G+K + C+ NS+L+ H + HT EK
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.16
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T +K Y C CG F S L H+ H K S
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 399 LKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
L H IHT +K + C +C F L H TH+
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.4 bits (82), Expect = 0.004
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 168 NLKCHLDIHSGEKDFSCHI---------NSNLSEHIRMHHTEEKKYICEVCGTSFLTWSS 218
NL + + + ++C + + L+ HIR+H T +K + C +C +F
Sbjct: 8 NLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDH 64
Query: 219 LNSHKYSH 226
L +H +H
Sbjct: 65 LTTHIRTH 72
Score = 32.7 bits (75), Expect = 0.036
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 449 SHRNRLRYHISTVHENKWKSAACDI--CGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAY 506
N L ++ + AC + C R F S + +H +H+ ++PF C++C +
Sbjct: 4 HPMNNLLNYVVP-KM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 507 KWRKNLVRHQK 517
+L H +
Sbjct: 60 SRSDHLTTHIR 70
Score = 29.6 bits (67), Expect = 0.47
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 425 SSLVAHTTTHSNVKFKCD--FCEKVYSHRNRLRYHISTVHENKWKSAACDICGRVFLDSK 482
++L+ + + C C++ +S + L HI H + K C IC R F S
Sbjct: 7 NNLLNYVVPKMR-PYACPVESCDRRFSRSDELTRHIRI-HTGQ-KPFQCRICMRNFSRSD 63
Query: 483 NMKKHAAVHS 492
++ H H+
Sbjct: 64 HLTTHIRTHT 73
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.9 bits (81), Expect = 0.003
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + + + C CG A+ +L RHQK
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 34.9 bits (81), Expect = 0.003
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 401 EHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+ T K Y C CG F L H H+
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 27.9 bits (63), Expect = 0.78
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 192 EHIRMHHTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T+ K Y C CG +F L H+ H
Sbjct: 2 SSGSSG-TDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F S L H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 31.7 bits (73), Expect = 0.040
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG + +L RH++
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ NS+L+ H R+ HT K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKPSGPS 44
Score = 29.8 bits (68), Expect = 0.18
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG F S L H+ H K S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 25.2 bits (56), Expect = 7.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C+ CG+VF + ++ +H VH+ +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK Y C CG F S L H H+ K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.017
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+P+ C CG + +L RH+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
Score = 30.9 bits (71), Expect = 0.064
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
+GEK + C+ NS+L+ H + HT EK
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.20
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK Y C CG F S L H+ H K S
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ T EK + C CG + + L H H+ K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.011
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E+PF C CG +Y R +L +HQ+
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
Score = 30.6 bits (70), Expect = 0.088
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYIC 206
+GEK F C +L++H R+ HT EK
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.30
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK-FSCSH 235
T EK + C CG S+ L H+ H K S
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 8.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVC 499
C CG+ + ++ +H VH+ E+P
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 9.9
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 154 YKCPDCPAILQTFKNLKCHLDIHSGEKDFSC 184
+KC +C +L H +H+GEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK-FKC 441
+ + +K Y C+ C FI L H H+ +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 32.1 bits (74), Expect = 0.027
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ S ++P+ CK C + +L +H++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
Score = 30.6 bits (70), Expect = 0.100
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ +K Y C+ C +F+ LN HK H
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 29.0 bits (66), Expect = 0.37
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 172 HLDIHSGEKDFSCH-------INSNLSEHIRMHHTEEKKYICE 207
SG+K + C +L++H R+ HT E+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERSSGPS 44
Score = 27.9 bits (63), Expect = 0.86
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 471 CDICGRVFLDSKNMKKHAAVHSTERPFVCK 500
C C + F+ ++ +H VH+ ER
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 25.2 bits (56), Expect = 8.9
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 384 YQCPHCPSLLKTFW---TLKEHFNIHTSEKKYVCE 415
Y+C C KTF L +H +HT E+
Sbjct: 13 YECKECR---KTFIQIGHLNQHKRVHTGERSSGPS 44
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.5 bits (91), Expect = 0.004
Identities = 10/68 (14%), Positives = 20/68 (29%)
Query: 368 KDVEEKCRIIVEDTMRYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSL 427
+V+ + + +++ +S Y C +C A L
Sbjct: 137 GNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDL 196
Query: 428 VAHTTTHS 435
AH +H
Sbjct: 197 DAHVASHG 204
Score = 34.1 bits (77), Expect = 0.14
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDD 228
+ Y C VC + L++H SH
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 31.0 bits (69), Expect = 1.2
Identities = 5/50 (10%), Positives = 12/50 (24%)
Query: 467 KSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQ 516
+ + + S+ + C +C +L H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Score = 31.0 bits (69), Expect = 1.2
Identities = 8/64 (12%), Positives = 15/64 (23%), Gaps = 1/64 (1%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDD-RKFSCSHCGNSYKNPIFLKRHFRESHLK 256
I E + + + C C +P+ L H L
Sbjct: 147 QKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Query: 257 HSKS 260
+ +
Sbjct: 207 GNMT 210
Score = 31.0 bits (69), Expect = 1.4
Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 12/77 (15%)
Query: 155 KCPDCPAILQTFKNLKCHLDIHSGEKDFSCHI-------NSNLSEHIRMHHTEEKKY--- 204
AI+ S + CH+ +L H+ H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
Query: 205 --ICEVCGTSFLTWSSL 219
I +W +
Sbjct: 214 SEIQRHITEFISSWQNH 230
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 35.7 bits (82), Expect = 0.004
Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 24/97 (24%)
Query: 405 IHTSEKKYVCELCGAYFIHKSSLVAH-TTTHSNVK-FKCDFCEKVYSHRNRLRYHISTVH 462
I ++ + C F LV H T H C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY----------------- 61
Query: 463 ENKWKSAACDICGRVFLDSKNMKKHAAVHSTERPFVC 499
W+ C G+ F + H VH+ E+
Sbjct: 62 ---WEE--CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 30.3 bits (68), Expect = 0.42
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 369 DVEEKCRIIVEDTMRYQCPHCPSLLKTFWTLKEHFNI----HTSEKKYVCE-----LCGA 419
E C+ I E + C T L H + + +VC G
Sbjct: 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK 70
Query: 420 YFIHKSSLVAHTTTHSNVK-FKC 441
F K LV H H+ K
Sbjct: 71 SFKAKYKLVNHIRVHTGEKSGPS 93
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 35.6 bits (81), Expect = 0.006
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 176 HSGEKDFSCHINSNLSEHIRMHHTEEKKYICEVCGT-SFLTWSSLNSHKYSHDDRKFSCS 234
K+ + +L E + ++ C C T L H + F+C
Sbjct: 7 GRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCH 66
Query: 235 HCGNSYKNPIFLKRHFRESH 254
HCG ++ +K H +H
Sbjct: 67 HCGKQLRSLAGMKYHVMANH 86
Score = 28.3 bits (62), Expect = 2.0
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 410 KKYVCELCGAYFIHK-SSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENK 465
C C A L H F C C K ++YH+ H +
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Score = 27.9 bits (61), Expect = 2.5
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 370 VEEKCRIIVEDTMRYQCPHCPSLL-KTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLV 428
+EE+ + + D CP C ++ KT LK+H E + C CG + +
Sbjct: 21 LEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMK 79
Query: 429 AHTTTHSNVK 438
H + N
Sbjct: 80 YHVMANHNSL 89
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.1 bits (82), Expect = 0.008
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 4/109 (3%)
Query: 410 KKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSA 469
K + L K + Y +
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAIS--QF 75
Query: 470 ACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKN 518
C +C F S ++K+H + TE VC +C + + + H
Sbjct: 76 VCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSALDHVCK 122
Score = 34.5 bits (78), Expect = 0.027
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 196 MHHTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCGNSYKNPIFLKRHFRESH 254
+ +++C +C F + SL H + K C C + + H + H
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHVCKKH 124
Score = 31.4 bits (70), Expect = 0.25
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 383 RYQCPHCPSLLKTFWTLKEHFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNV 437
++ CP C + +LK+H E VC +C F S + H N+
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 29.1 bits (64), Expect = 1.7
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 478 FLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNCKASAKCSL 527
LD + FVC LC + + +L +H + + + C +
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPV 105
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 33.4 bits (77), Expect = 0.010
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 402 HFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCD 442
+ T EK + C CG F L H +HS VK
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.0 bits (68), Expect = 0.17
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 172 HLDIHSGEKDFSCHI---------NSNLSEHIRMHHTEEKKYICE 207
+GEK F+C + LS H R H+ K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSGPS 46
Score = 29.2 bits (66), Expect = 0.28
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVC 499
CG F S + +H HS +P
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 27.7 bits (62), Expect = 1.1
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 193 HIRMHHTEEKKYIC--EVCGTSFLTWSSLNSHKYSH-DDRKFSCS 234
T EK + C CG F L+ H+ SH + S
Sbjct: 3 SGSSG-TGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTH 434
+ ++ Y C+ CG F K SL H H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 30.2 bits (69), Expect = 0.13
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 491 HSTERPFVCKLCGIAYKWRKNLVRHQK 517
S +R + C+ CG +++ + +L H++
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHER 31
Score = 28.7 bits (65), Expect = 0.44
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
+ ++ Y C+ CG SF SL H+ H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 32.9 bits (75), Expect = 0.014
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 486 KHAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ + E PF C C + R LV+H++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 31.0 bits (70), Expect = 0.066
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+ E + C C F ++ LV H TH+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 27.1 bits (60), Expect = 1.8
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 429 AHTTTHSNVK-FKCDFCEKVYSHRNRLRYH 457
+ ++ + FKC C++V++ RN L H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 25.6 bits (56), Expect = 5.5
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHDDRK 230
E + C C F + L H+ +H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 33.5 bits (77), Expect = 0.016
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 167 KNLKCHLDIHSGEKDFSCHIN---------SNLSEHIRMHHTEEKKYICEV--CGTSFLT 215
S + C S+L H R HT EK + C C F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFAR 61
Query: 216 WSSLNSHKYSH 226
L+ H+ +H
Sbjct: 62 SDELSRHRRTH 72
Score = 30.4 bits (69), Expect = 0.22
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 398 TLKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTHSNVK-FKCDF--CEKVYSHRN 452
+ + ++C CG + S L AHT TH+ K F C + CE+ ++ +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 453 RLRYHIST 460
L H T
Sbjct: 64 ELSRHRRT 71
Score = 29.7 bits (67), Expect = 0.37
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 474 CGRVFLDSKNMKKHAAVHSTERPFVCKL--CGIAYKWRKNLVRHQK 517
CG+ + S ++K H H+ E+PF C C + L RH++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 29.7 bits (67), Expect = 0.46
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 384 YQCPHCPSLLKTFWT---LKEHFNIHTSEKKYVC--ELCGAYFIHKSSLVAHTTTH 434
+ C H P KT++ LK H HT EK + C + C F L H TH
Sbjct: 18 HICSH-PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.3 bits (66), Expect = 0.58
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 153 QYKC--PDCPAILQTFKNLKCHLDIHSGEKDFSCHI---------NSNLSEHIRMH 197
+ C P C +LK H H+GEK FSC + LS H R H
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 26.6 bits (59), Expect = 5.2
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 424 KSSLVAHTTTHSNVK-FKCDF--CEKVYSHRNRLRYHISTVHENKWKSAACDI--CGRVF 478
S S ++ C C K Y + L+ H T H + K +C C R F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGE-KPFSCSWKGCERRF 59
Query: 479 LDSKNMKKHAAVH 491
S + +H H
Sbjct: 60 ARSDELSRHRRTH 72
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.5 bits (72), Expect = 0.043
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 402 HFNIHTSEKKYVCELCGAYFIHKSSLVAHTTTHSNV 437
T K + C C F L H H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 26.5 bits (59), Expect = 2.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSH 226
T K + C C SF L H+ H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 3.8
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 487 HAAVHSTERPFVCKLCGIAYKWRKNLVRHQK 517
+ +PF C C ++ +L H+K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 25.4 bits (56), Expect = 6.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 430 HTTTHSNVK-FKCDFCEKVYSHRNRLRYHIST 460
T + +K F+C C++ +S + L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 30.5 bits (68), Expect = 0.12
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 227 DDRKFSCSHCGNSYKNPIFLKRHFRESHLKHSKSNPEQ 264
D+ ++C CG YKN L H+ SHL + ++
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKE 41
Score = 27.8 bits (61), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 439 FKCDFCEKVYSHRNRLRYHISTVH 462
+ CD C K Y +R L YH + H
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSH 31
Score = 25.1 bits (54), Expect = 9.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 494 ERPFVCKLCGIAYKWRKNLVRH 515
++P+ C +CG YK R L H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 30.6 bits (68), Expect = 0.19
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 471 CDICGRVFLDSKNMKKHAAVHST 493
C +CG+VF D+ +++H A H
Sbjct: 16 CGLCGKVFTDANRLRQHEAQHGV 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.26
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 363 EKQYWKDVEEKCRIIVEDTMRYQCPHCPSL-LKTFWTLK 400
EKQ K ++ ++ +D+ P+L +K T++
Sbjct: 18 EKQALKKLQASLKLYADDS-------APALAIKA--TME 47
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.0 bits (64), Expect = 0.36
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 491 HSTERPFVCKLCGIAYKWRKNLVRHQK 517
S +RPFVC++C A+ + N RH K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.8 bits (74), Expect = 0.42
Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 24/150 (16%)
Query: 228 DRKFSCSHCGNSYKN-P-----IFLKRH-FRESHLKHSKSNPEQYAVKSLQDIMYWCNVC 280
DR C C P I L + F + K K + + C C
Sbjct: 62 DRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIK--------KVCECV---CMHC 110
Query: 281 SQRCYLSATCSIHRPSNCKDQYKMSVSISNECDQHMECHTCNECD------SKHNDCQSL 334
+ + + KD K +I C M C T + C +
Sbjct: 111 GKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNT 170
Query: 335 WDHVFSEHKNMLAFSKPDDSENKISKVAEK 364
+ + ++ K D + + +
Sbjct: 171 QPTIRKDGLKLVGSWKKDRATGDADEPELR 200
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 32.4 bits (74), Expect = 0.45
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 38/116 (32%)
Query: 386 CPHCPSLLKTFWTLKEHFNIHTSEKKY---VCELCGAYFIHKSSLV-------AHTTTHS 435
C C L+E + +Y C CG + S++ A T+
Sbjct: 114 CEDC---------LRELKDPKDRRYRYPFINCTNCGP----RFSIIEDIPYDRAKTSMK- 159
Query: 436 NVKFK-CDFCEKVYSH-RNRLRYHISTVHENKWKSAACDICG-RVFLDSKNMKKHA 488
F C+ C + Y +R R+H V AC CG + +
Sbjct: 160 --VFPMCEKCSREYHDPHDR-RFHAQPV--------ACFDCGPSLSFVGEGCFDDE 204
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.57
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 222 HKYSHDDRKFSCSHCGNSYKNPIFLKRHFRESHLKHSK 259
+ +++ NP L+ S L+ K
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.64
Identities = 12/56 (21%), Positives = 15/56 (26%), Gaps = 8/56 (14%)
Query: 50 MSTPAPSSESVCTEHSNLFPKCHSCQKCEESFDNCNNLWSHMFIKHENSDFVCNLC 105
M T + NL C E C + + D VC LC
Sbjct: 1 MMTRESIDKRAGRRGPNLNIV----LTCPE----CKVYPPKIVERFSEGDVVCALC 48
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.68
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 199 TEEKKYICEVCGTSFLTWSSLNSHKYSHDDRKFSCSHCG 237
+ EK + C CG F + SL H+ H +K S G
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG 46
Score = 26.7 bits (58), Expect = 3.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+ EK + C CG F SL+ H H K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.7 bits (71), Expect = 0.73
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHT-TTHS 435
+ YVC +C A F S+L H + H
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDHR 141
Score = 31.3 bits (70), Expect = 1.0
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 419 AYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVH 462
A + + T + + C+ C +S + L H+ + H
Sbjct: 97 AAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.5 bits (65), Expect = 0.89
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 371 EEKCRIIVEDTMRYQCPHCPSLL-KTFWTLKEHF-NIHTSEKKYVCELCGAYFIHKSSLV 428
EE+ + + + CP C + KT LK+H + C+ C F K+ L
Sbjct: 12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71
Query: 429 AHT-TTHSN 436
HT HS
Sbjct: 72 YHTMAEHSA 80
Score = 28.4 bits (62), Expect = 1.8
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 200 EEKKYICEVCGTSFL-TWSSLNSH--KYSHDDRKFSCSHCGNSYKNPIFLKRHFRESH 254
E + +C C T L H C HC +K+ L H H
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 27.6 bits (60), Expect = 4.0
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 410 KKYVCELCGAYFIHK-SSLVAHTTTHSNVK--FKCDFCEKVYSHRNRLRYHISTVHENK 465
+ VC C L H ++ KC C K + + L YH H K
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN
protein structure initiative, midwest center for
structural genomics; 2.50A {Pseudomonas syringae PV}
Length = 182
Score = 30.4 bits (68), Expect = 1.1
Identities = 13/91 (14%), Positives = 18/91 (19%), Gaps = 5/91 (5%)
Query: 384 YQCPHCPSLLKTFWTLKEHFNIHTSEKKYV----CELCGAYFIHKSSLVAHTTTHSNVKF 439
CP L + + I + L A T
Sbjct: 24 PTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIVRCILAAATLEGGKESA 83
Query: 440 KCDFCEKVYSHRNRLRYHISTVHENKWKSAA 470
K V SHR + N +
Sbjct: 84 K-AVMTAVASHREEFEFEHHAGGPNLDATPN 113
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 412 YVCELCGAYFIHKSSLVAHTTTHSNVKFKCDF----CEKVYSHRNRLRYHISTVHENKWK 467
Y+CE C Y ++ L H KC + ++Y N + + +
Sbjct: 42 YLCEFCLKYMKSRTILQQHMK-------KCGWFHPPANEIYRKNNISVFEVDGNVSTIYC 94
Query: 468 SAACDICGRVFLDSKNM 484
C + ++FLD K +
Sbjct: 95 QNLC-LLAKLFLDHKTL 110
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 1.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 199 TEEKKYICEVCGTSFLTWSSLNSHKYSHDD 228
+ K ++C++CG F + +L SHK H
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTA 34
Score = 25.9 bits (56), Expect = 3.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHS 435
+S K ++C++CG F K +L +H H+
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHT 33
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 28.7 bits (63), Expect = 1.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 379 EDTMRYQCPHCPSLLKTFWTLKEHFNIHTSE 409
YQC HC S L++ L H NIH E
Sbjct: 21 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 28.2 bits (62), Expect = 2.3
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAH-TTTHSNVK----FKCDFCEKVYSHRNRLRYHIST 460
E Y C+ C + H + H NV + C C + + L H
Sbjct: 13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK 72
Query: 461 VH 462
H
Sbjct: 73 YH 74
Score = 27.8 bits (61), Expect = 3.7
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 423 HKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSAA--CDICGRVFLD 480
H ++C +C N +H+ + H N +++ C C +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 481 SKNMKKH-AAVHSTERPFVCKL 501
+ +H H E F +
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 2.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 491 HSTERPFVCKLCGIAYKWRKNLVRHQK 517
S E+P+ C +CG+ +K + + H +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR 31
Score = 25.6 bits (55), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 198 HTEEKKYICEVCGTSFLTWSSLNSHKYSHD 227
+ EK Y C VCG F ++ H SHD
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.0 bits (67), Expect = 2.9
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 25/155 (16%)
Query: 228 DRKFSCSHCGNSYKN-PIFLKRHFRESHLKHSKS--NPEQYAVKSLQDIMYWCNVCSQRC 284
DR+F C CG + + P HF H++ +K + + K + + C C +
Sbjct: 64 DRQFKCQTCGETMADCP----GHF--GHIELAKPVFHI-GFLSKIKKILECVCWNCGKLK 116
Query: 285 YLSATCSIHRPSNCKDQYKMSVSISNECDQHMECHTCNECD------------SKHNDCQ 332
S+ + +D ++ N C M C T H C
Sbjct: 117 IDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCG 176
Query: 333 SLWDHVFSEHKNMLAFSKPDDSENKISKVAEKQYW 367
+ + + + K E+ + EK+
Sbjct: 177 AAQPTIRKDGLRLWGSWKRGKDES---DLPEKRLL 208
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 29.6 bits (65), Expect = 3.2
Identities = 31/308 (10%), Positives = 74/308 (24%), Gaps = 6/308 (1%)
Query: 28 EECKELCVLSKYCIKHKDCSKAMSTPAPSSESVCTEHSNLFPKCHSCQKCEESFDNCNNL 87
C + V +K + + + C + + + + N
Sbjct: 238 PRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNG 297
Query: 88 WSHMFIKHENSDFVCNLCPPDSKIMIKYAHLLVRHMKQCHTMQVHIPAVYKNFRSVTSFT 147
C S+ + + I + +
Sbjct: 298 LKMCEPCGGLCPKACEGTGSGSRFQTVDSSNI-----DGFVNCTKILGNLDFLITGLNGD 352
Query: 148 MNNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHINSNLSEHIRMHHTEEKKYICE 207
+ P+ + +T + + +L+I S + I + +
Sbjct: 353 PWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLL 412
Query: 208 VCGTSFLTWSSLNSHKYSHDDRKFSCSHCGNSYKNPIFLKRHFRESHLKHSKSNPEQYAV 267
+ +T S K R + ++ Y + + + R + +
Sbjct: 413 IMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRR 472
Query: 268 KSLQDIMYWCNVCSQR-CYLSATCSIHRPSNCKDQYKMSVSISNECDQHMECHTCNECDS 326
+ + +CS C+ N + + E EC S
Sbjct: 473 DCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFS 532
Query: 327 KHNDCQSL 334
H +CQ +
Sbjct: 533 CHPECQPM 540
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 29.3 bits (66), Expect = 3.5
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 441 CDFCEKVYSH-RNRLRYHISTVHENKWKSAACDICG-RVFL 479
C C+K Y +R R+H V AC CG +
Sbjct: 70 CPACDKEYRDPLDR-RFHAQPV--------ACPECGPYLEW 101
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 28.8 bits (64), Expect = 4.5
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 412 YVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENKWKSAAC 471
Y+ + YF K + + ++Y + I + W C
Sbjct: 37 YIDDFTLQYFGSKKQYERYRKKC---TLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNLC 93
Query: 472 DICGRVFLDSKNM 484
+ ++FLD K +
Sbjct: 94 -LLSKLFLDHKTL 105
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 407 TSEKKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
+S K + CE C F K SL AH H+N K
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 28.8 bits (63), Expect = 6.2
Identities = 37/311 (11%), Positives = 73/311 (23%), Gaps = 3/311 (0%)
Query: 27 CEECKELCVLSKYCIKHKDCSKAMSTPAPSSESVCTEHSNLFPKCHSCQKCEESFDNCNN 86
+ C L + + + + + + C + + + C
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEE 296
Query: 87 LWSHMFIKHENSDFVCNLCPPDSKIMIKYAHLLVRHMKQCHTMQVHIPAVYKNFRSVTSF 146
K E + + + +
Sbjct: 297 DGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILP--VAFRG 354
Query: 147 TMNNITQYKCPDCPAILQTFKNLKCHLDIHSGEKDFSCHINSNLSEHIRMHHTEEKKYIC 206
T P IL+T K + L I + ++ + E IR + ++
Sbjct: 355 DSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSL 414
Query: 207 EVCGTSFLTWSSLNSHKYSHDDRKFSCSHCGNSYKNPIFLKRHFRESHLKHSKSNPEQYA 266
V + +T L S K D + Y N I K+ F S K +
Sbjct: 415 AVVSLN-ITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGEN 473
Query: 267 VKSLQDIMYWCNVCSQRCYLSATCSIHRPSNCKDQYKMSVSISNECDQHMECHTCNECDS 326
+ + C+ N + + E +EC
Sbjct: 474 KCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQ 533
Query: 327 KHNDCQSLWDH 337
H +C +
Sbjct: 534 CHPECLPQAMN 544
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.2 bits (55), Expect = 6.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 495 RPFVCKLCGIAYKWRKNLVRHQKNCKAS 522
+ + C LC A+ R L+RH + +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.7 bits (61), Expect = 7.6
Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 2/114 (1%)
Query: 406 HTSEKKYVCELCGAYFIHKSSLVAHTTTHSNVKFKCDFCEKVYSHRNRLRYHISTVHENK 465
+ + C + + + + + H+ LR+ +
Sbjct: 48 SIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCE 107
Query: 466 WKSAACDICGRVFLDSKNMKKHAAVHSTERPFVCKLCGIAYKWRKNLVRHQKNC 519
+ C C R F ++ H R C C + ++ H +NC
Sbjct: 108 FALMDCPQCQRPFQK-FHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNC 159
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 24.7 bits (53), Expect = 8.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 410 KKYVCELCGAYFIHKSSLVAHTTTHSNVK 438
K C +CG F SSL+AH H+ K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 27.9 bits (61), Expect = 8.5
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 383 RYQCPHCPSL-LKTFWTL--KEHFNIHTSEKKYVCELCGAYF 421
R +C HC + +L + C C Y
Sbjct: 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.131 0.438
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,140,385
Number of extensions: 456422
Number of successful extensions: 4335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3569
Number of HSP's successfully gapped: 1245
Length of query: 555
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 457
Effective length of database: 3,965,535
Effective search space: 1812249495
Effective search space used: 1812249495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.3 bits)