BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11591
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
+ CP+CG L EH HTGE+P+ C C KSF ++ L H +R H + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKC 80
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCE 120
CG++FS ++NL H RTHT EK Y C CG F+Q A L H+ TH K +KC C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 121 KVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNT 169
K ++ NL H +THT Y C CGK F L H+ TH T
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 2/174 (1%)
Query: 21 IMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRT 80
+ GE+P+ C C KSF L H +R H + ++C CG++FSDK +LT H RT
Sbjct: 13 AALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 81 HTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDN 139
HT EK Y C CG F+Q A L H+ TH K + C C K ++ ++L+ H +THT
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 140 SLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
Y C CGK F L H+ TH + C C F + L H ++H+
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%)
Query: 94 AEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGT 153
+EF +++ + + C C K ++ +L H +THT Y C CGK F
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 154 ARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197
+ L RH+ TH + C C F + +L H ++H+ P
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FK 115
+ ++C CG++FS SNL H RTHT EK Y C CG F+Q + L H+ TH K +K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 116 CNYCEKVYNNPSNLQRHIKTHTD 138
C C K ++ +L RH +TH +
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQN 85
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNSLY 142
EK Y C CG F+Q + L H+ TH K +KC C K ++ S+LQ+H +THT Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 143 ICEICGKDFGTARYLKRHKDTHN 165
C CGK F + +L RH+ TH
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQ 84
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKK 86
E+P+ C C KSF L H +R H + ++C CG++FS S+L H RTHT EK
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 87 YMCELCGAEFAQWATLYNHKFTHNDIK 113
Y C CG F++ L H+ TH + K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
+KCP+CG +L++H HTGE+P+ C C KSF L H +R H + ++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKC 63
Query: 62 NHCGRAFSDKSNLTVHIRTHTDEK 85
CG++FS +L+ H RTH ++K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCE 173
+KC C K ++ SNLQ+H +THT Y C CGK F + L++H+ TH + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 174 VCNTGFKVKKHLTQHYKSH 192
C F HL++H ++H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197
Y C CGK F + L++H+ TH + C C F L +H ++H+ P
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 4 CPQ--CGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
CP C + ++ ++R+H+ H G R HVC C K+F KL H + VH + QC
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQC 65
Query: 62 --NHCGRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNHKFTHNDIK 113
CG+ FS NL H+R HT ++ Y+C C +FAQ L +H TH K
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 35 CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMC--ELC 92
C+K FR+ + H R+ H C CG+AF + S L H HT EK + C E C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 93 GAEFAQWATLYNHKFTH-NDIKFKCNY--CEKVYNNPSNLQRHIKTHT 137
G F+ L H H D + C + C K + +NL+ HI TH
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 92 CGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYIC--EICGK 149
C F + + H TH C C K + S L+RH HT + C E CGK
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 150 DFGTARYLKRHKDTHNSVNTFVC--EVCNTGFKVKKHLTQHYKSHS 193
F L+ H H +VC + CN F +L H +H+
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F + L+ H R+H + QC C R FS +++L HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA T H H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 27/101 (26%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVY 123
C R FS K+NL HIR HT +K + C +C F+Q A+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQAS---------------------- 49
Query: 124 NNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
L HI+THT + C+ICG+ F T RH H
Sbjct: 50 -----LNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ +NL HI+ HT + C IC ++F L H TH F C++C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F T+H K H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F L H H F C +C F + L H ++H+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
F C CG K +L H++IH+ RP+ C C K F + + H +H + H+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 62 NHCGRAFSDKSNLTVHIRTHT 82
CG+AFS SNL H R HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 32 CHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCEL 91
C +C KSF+ L+ H +H R + C +CG+ F KS++ H HT EK + C++
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 92 CGAEFAQWATLYNHKFTHN 110
CG F+Q + L H H
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYC 119
C CG++F S L+ H+ H+D + Y C+ CG F Q + + H F H K KC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 120 EKVYNNPSNLQRHIKTHT 137
K ++ SNL H + HT
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCE 173
F C C K + S L H+ H+D Y C+ CGK F +K+H H C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 174 VCNTGFKVKKHLTQHYKSHS 193
VC F +L H + H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F G L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 84 EKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
E+ Y C E C F+Q +L H H K F+C C + ++ +L HI+THT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 141 LYICEICGKDFGTARYLKRHKDTH 164
+ C+ICG+ F + KRH H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKV 122
C R FS +LT HIR HT +K + C +C F++ L H TH K F C+ C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 123 YNNPSNLQRHIKTH 136
+ +RH K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ +L RHI+ HT + C IC ++F + +L H TH F C++C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F + L+ H R+H + QC C R FS + L HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA T H H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 27/101 (26%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVY 123
C R FS K+NL HIR HT +K + C +C F+Q
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQH------------------------ 47
Query: 124 NNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+ L +HI+THT + C+ICG+ F T RH H
Sbjct: 48 ---TGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ +NL HI+ HT + C IC ++F L +H TH F C++C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F L H H F C +C F L QH ++H+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCN 117
H+C CG+ FS K L H+R HT K Y C+ C A ++L H H+D + FKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 118 YCEKVYNNPSNLQRHIKTHTDNS 140
C N S L H+++HT +S
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDS 91
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 29 PHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYM 88
PH C VC K F + KL H R H ++ ++C C A +D S+L H+R H+DE+ +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 89 CELCGAEFAQWATLYNHKFTH 109
C++C + L H +H
Sbjct: 67 CQICPYASRNSSQLTVHLRSH 87
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCN 62
KC CG L+ H+ HTG +P+ C C + + LN H R+H R +C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKCQ 68
Query: 63 HCGRAFSDKSNLTVHIRTHTDE 84
C A + S LTVH+R+HT +
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 87 YMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICE 145
+ CE+CG F++ L H H +K +KC C+ + S+L +H++ H+D + C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 146 IC 147
IC
Sbjct: 69 IC 70
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 115 KCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEV 174
KC C K ++ L+ H++ HT Y C+ C + L +H H+ F C++
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 175 CNTGFKVKKHLTQHYKSHSMFIPPEQ 200
C + LT H +SH+ P
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYK 50
+KC C + SL +H+ IH+ ERP C +C + RN +L VH +
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F + L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKV 122
C R FSD SNLT HIR HT +K + C +C F++ L H TH K F C+ C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 123 YNNPSNLQRHIKTH 136
+ +RH K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ +++ SNL RHI+ HT + C IC ++F + +L H TH F C++C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F +L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 84 EKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
E+ Y C E C F++ A L H H K F+C C + ++ +L HI+THT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 141 LYICEICGKDFGTARYLKRHKDTH 164
+ C+ICG+ F + KRH H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKV 122
C R FS + LT HIR HT +K + C +C F++ L H TH K F C+ C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 123 YNNPSNLQRHIKTH 136
+ +RH K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ + L RHI+ HT + C IC ++F + +L H TH F C++C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 84 EKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
E+ Y C E C F++ A L H H K F+C C + ++ +L HI+THT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 141 LYICEICGKDFGTARYLKRHKDTH 164
+ C+ICG+ F + KRH H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKV 122
C R FS ++LT HIR HT +K + C +C F++ L H TH K F C+ C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 123 YNNPSNLQRHIKTH 136
+ +RH K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ ++L RHI+ HT + C IC ++F + +L H TH F C++C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F +L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 84 EKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
E+ Y C E C F++ L H H K F+C C + ++ +L HI+THT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 141 LYICEICGKDFGTARYLKRHKDTH 164
+ C+ICG+ F + KRH H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKV 122
C R FS LT HIR HT +K + C +C F++ L H TH K F C+ C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 123 YNNPSNLQRHIKTH 136
+ +RH K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ L RHI+ HT + C IC ++F + +L H TH F C++C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F +L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 84 EKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
E+ Y C E C F++ L H H K F+C C + ++ +L HI+THT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 141 LYICEICGKDFGTARYLKRHKDTH 164
+ C+ICG+ F + KRH H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKV 122
C R FS LT HIR HT +K + C +C F++ L H TH K F C+ C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 123 YNNPSNLQRHIKTH 136
+ +RH K H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ L RHI+ HT + C IC ++F + +L H TH F C++C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------ 57
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 58 ---GEKPFACDI 66
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYC 119
C CGR F+ NL +H RTHTDE+ Y C++C F + L +H++ H+ K FKC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 120 EKVYNNPSNLQRHIKTHTDNS 140
K + L H H S
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTS 100
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVC 172
+F C +C + + NL H +THTD Y C+IC K F +L+ H+ H+ F C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 173 EVCNTGFKVKKHLTQHYKSHSMFIPP 198
+ C GF + L H H P
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQTSSP 102
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC 61
F C CG ++L H HT ERP+ C +C K+FR + L H + +H + + +C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 62 NHCGRAFSDKSNLTVHIRTH 81
CG+ F L VH H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNSLY 142
+K+++C+ CG F + L H+ TH D + + C+ C K + +L+ H H+ +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 143 ICEICGKDFGTARYLKRHKDTHNSVNT 169
C+ CGK F +R L HK H ++
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 31 VCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCE 90
+C C + F L +H +R H R + C+ C +AF + +L H H+ EK + C+
Sbjct: 19 ICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 91 LCGAEFAQWATLYNHKFTH 109
CG F Q TL HK H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 27 ERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP+ C V C + F +L H R+H + QC C R FS +LT HIRTHT E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K + C++CG +FA+ H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 53 HERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDI 112
HER C R FS LT HIR HT +K + C +C F++ L H TH
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 113 K-FKCNYCEKVYNNPSNLQRHIKTH 136
K F C+ C + + +RH K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 84 EKKYMC--ELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
E+ Y C E C F++ L H H K F+C C + ++ +L HI+THT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 141 LYICEICGKDFGTARYLKRHKDTH 164
+ C+ICG+ F + KRH H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178
C++ ++ L RHI+ HT + C IC ++F + +L H TH F C++C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 179 FKVKKHLTQHYKSH 192
F +H K H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT------ 58
Query: 200 QFPGLDPTSCNM 211
G P +C++
Sbjct: 59 ---GEKPFACDI 67
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 5 PQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCN 62
P C + L+ H HTGE+P+ C C + F +L H +R H ++ QC
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCK 70
Query: 63 HCGRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNH 105
C R FS +L H RTHT EK + C C +FA+ L H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 114 FKCNY--CEKVYNNPSNLQRHIKTHTDNSLYICEI--CGKDFGTARYLKRHKDTHNSVNT 169
F C Y C K Y S+LQ H + HT Y C+ C + F + LKRH+ H V
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHSMFIP 197
F C+ C F HL H ++H+ P
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP 94
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 27/131 (20%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVY 123
C + + S+L +H R HT EK Y C+ CE+ +
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDF-------------------------KDCERRF 48
Query: 124 NNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCE--VCNTGFKV 181
+ L+RH + HT + C+ C + F + +LK H TH F C C F
Sbjct: 49 SRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Query: 182 KKHLTQHYKSH 192
L +H+ H
Sbjct: 109 SDELVRHHNMH 119
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 25 TGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCN--HCGRAFSDKSNLTVHIRT 80
+ +RP +C C+K + L +H R H + +QC+ C R FS L H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 81 HTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNY--CEKVYNNPSNLQRHIKTH 136
HT K + C+ C +F++ L H TH K F C + C+K + L RH H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 54 ERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNHKFTH 109
+R TH C++ CG+ ++ S+L H+RTHT EK Y C+ CG +FA+ L H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 110 NDIK-FKCNYCEKVYNNPSNLQRHIKTH 136
+ F+C C++ ++ +L H+K H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 116 CNY--CEKVYNNPSNLQRHIKTHTDNSLYICEI--CGKDFGTARYLKRHKDTHNSVNTFV 171
C+Y C K Y S+L+ H++THT Y C+ CG F + L RH H F
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 172 CEVCNTGFKVKKHLTQHYKSH 192
C+ C+ F HL H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 7 CGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHC 64
CG L+ H+ HTGE+P+ C C F +L HY R H R QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHRPFQCQKC 71
Query: 65 GRAFSDKSNLTVHIRTH 81
RAFS +L +H++ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 54 ERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNHKFTH 109
R TH C++ CG+ ++ S+L H+RTHT EK Y C+ CG +FA+ L H H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 110 NDIK-FKCNYCEKVYNNPSNLQRHIKTH 136
+ F+C C++ ++ +L H+K H
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 116 CNY--CEKVYNNPSNLQRHIKTHTDNSLYICEI--CGKDFGTARYLKRHKDTHNSVNTFV 171
C+Y C K Y S+L+ H++THT Y C+ CG F + L RH H F
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 172 CEVCNTGFKVKKHLTQHYKSH 192
C+ C+ F HL H K H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 7 CGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHC 64
CG L+ H+ HTGE+P+ C C F +L HY R H R QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHRPFQCQKC 72
Query: 65 GRAFSDKSNLTVHIRTH 81
RAFS +L +H++ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 6 QCGALLKNIWSLREHIMIHTGERPHVC--HVCSKSFRNRGKLNVH-YKRVHERIRTHQCN 62
CGA W L+ H+ HTGE+P C C K F + L H E+ T +
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 63 HCGRAFSDKSNLTVHIRTHTDEK--KYMC--ELCGAEFAQWATLYNHKFTH-NDIKFKCN 117
C F+ K+N+ H + K Y+C E CG F + L H+F+H + ++C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 118 Y--CEKVYNNPSNLQRHIKTHT 137
+ C+K ++ PS L+RH K H
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHA 160
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 85 KKYMCEL--CGAEFAQWATLYNHKFTHNDIK-FKCNY--CEKVYNNPSNLQRHIKTHTDN 139
K+Y+C CGA + + L H H K F C CEK + + +L RH THT
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 140 SLYICEICGKD--FGTARYLKRHKDTHNSVN--TFVC--EVCNTGFKVKKHLTQHYKSHS 193
+ C+ G D F T +K+H + +++ +VC E C FK L H SH+
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 194 MFIPPE 199
+P E
Sbjct: 131 QQLPYE 136
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 23 IHTGERPHVCHV--CSKS---FRNRGKLNVHYKRVHERIRTHQC--NHCGRAFSDKSNLT 75
IH + VCH CS+ F+ + L VH +R H + H+C C +++S NL
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 76 VHIRTHTDEKKYMC--ELCGAEFAQWATLYNHK-FTH-NDIKFKCNY--CEKVYNNPSNL 129
H+R+HT EK YMC E C F+ + H+ TH N+ + C C K Y +PS+L
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 130 QRHIKT 135
++H+KT
Sbjct: 147 RKHVKT 152
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 37/169 (21%)
Query: 35 CSKSFRNRGKL--NVHYKRVHERIRTHQCNHCG-----RAFSDKSNLTVHIRTHTDEKKY 87
CS+ F ++ +L +++ + +H + C+ G R F + L VH+R HT EK +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 88 MCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYIC--E 145
C G C K Y+ NL+ H+++HT Y+C E
Sbjct: 69 KCTFEG-------------------------CRKSYSRLENLKTHLRSHTGEKPYMCEHE 103
Query: 146 ICGKDFGTARYLKRHKD-THNSVNTFVCEV--CNTGFKVKKHLTQHYKS 191
C K F A +H++ TH++ +VC++ C + L +H K+
Sbjct: 104 GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 7 CGALLKNIWSLREHIMIHTGERPHVC--HVCSKSFRNRGKLNVHYKRVHERIRTHQCN-- 62
C + +L+ H+ HTGE+P++C CSK+F N H R H + + C
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 63 HCGRAFSDKSNLTVHIRT 80
C + ++D S+L H++T
Sbjct: 135 GCTKRYTDPSSLRKHVKT 152
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 116 CNY--CEKVYNNPSNLQRHIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTHNSVNTFV 171
C+Y C KVY S+L+ H++THT Y C E C F + L RH H F
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 172 CEVCNTGFKVKKHLTQHYKSH 192
C VCN F HL H K H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 54 ERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMC--ELCGAEFAQWATLYNHKFTH 109
E+ R H C++ C + ++ S+L H+RTHT EK Y C E C FA+ L H H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 110 NDIK-FKCNYCEKVYNNPSNLQRHIKTHTD 138
K F+C C + ++ +L H+K H +
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 5 PQCGALLKNIWSLREHIMIHTGERPHVC--HVCSKSFRNRGKLNVHYKRVHERIRTHQCN 62
P C + L+ H+ HTGE+P+ C C F +L HY R H + QC
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKPFQCG 79
Query: 63 HCGRAFSDKSNLTVHIRTHTD 83
C R+FS +L +H++ H +
Sbjct: 80 VCNRSFSRSDHLALHMKRHQN 100
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNHKFTHNDIK-FKC 116
+C G++F K L HIR HT EK + C CG FA+ L HK TH K FKC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 117 NY--CEKVYNNPSNLQRHIKTHTDN 139
+ C++ + N S+ ++H+ HT +
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 29/113 (25%)
Query: 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCN 62
+CP+ G K + L HI +HTGE+P C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG-------------------------- 97
Query: 63 HCGRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNHKFTHNDIK 113
CG+ F+ NL +H RTHT EK + CE C FA + H H K
Sbjct: 98 -CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
R ++C+ CG++FS S+L+ H RTHT EK Y C+ CG F Q + L H H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197
Y C+ CGK F + L +H+ TH + C+ C F + HL H++ H+ P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVN 168
++KC+ C K +++ S+L +H +THT Y C+ CGK F +L H H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+KC +CG + L +H HTGE+P+ C C K+F R L H+ RVH
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-RVH 69
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 15 WSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNL 74
W RE R + C C KSF + L+ H +R H + ++C+ CG+AF +S+L
Sbjct: 11 WQQRE-------RRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 75 TVHIRTHT 82
H R HT
Sbjct: 63 IGHHRVHT 70
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 83 DEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
+ ++Y C+ CG F+ + L H+ TH K +KC+ C K + S+L H + HT +
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHK----FTHNDIKFK 115
+C C + F K L VH R HT EK + C CG + + L H+ ++ F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 116 CNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRH 160
C+ C++ + L+ H+ +HT Y C C + F + L+ H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKR--VHERIRTHQ 60
+CP C + + L+ H HTGE+P C C K + + L H R ++ +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH 105
C+ C F + L +H+ +HT E Y C C +F Q L +H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 MFKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+F C C + LR H++ HTGE P+ C CS+ F + L H ++H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 2 FKCPQCGALLKNIWSLREHIM---IHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRT 58
F+CP+CG +L EH ++ E+ C VC ++FR R +L +H H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMP 94
Query: 59 HQCNHCGRAFSDKSNLTVHI 78
++C+ C + F K +L H+
Sbjct: 95 YKCSSCSQQFMQKKDLQSHM 114
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 115 KCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKD---THNSVNTFV 171
+C C K + + L+ H + HT + C CGK + L H+ + S F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 172 CEVCNTGFKVKKHLTQHYKSHSMFIP 197
C VC F+ + L H SH+ +P
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMP 94
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 137 TDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQH 188
+ +S C C K F + YLK H H F C C + K++L +H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 4 CPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERI-RTHQCN 62
C CG + ++++ L H + H+GE+P+ C VC F+ + +++ H + + + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 63 HCGRAFSDKSNLTVHIR 79
CG+ FS +L HI+
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFK---CN 117
C CG+ F D +L H +H+ EK Y C +CG F + + H +H+ K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 118 YCEKVYNNPSNLQRHIK 134
C K ++ P +L HIK
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+G C +C K FR+ LN H K H + + C CG F K ++ H+R+H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 85 --KKYMCELCGAEFAQWATLYNH 105
K Y+C+ CG F++ L H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGH 84
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 137 TDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFI 196
+ +S CEICGK F +L RHK +H+ + C VC FK K ++ H +SH +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 116 CNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSV--NTFVCE 173
C C K++ + +L RH +H+ Y C +CG F + H +H+ ++C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 174 VCNTGFKVKKHLTQHYK 190
C GF HL H K
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGE--RPHVCHVCSKSFRNRGKLNVHYKRVHE 54
+ CP CG K + H+ H G +P++C C K F LN H K+VH
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHND 111
+ + C CG+AFS S L H R HT EK Y C CG F+Q + L NH+ H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTD 83
E+P+ C C K+F +R + V ++RVH + ++C CG+AFS S L H R HT
Sbjct: 12 EKPYGCVECGKAF-SRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSF-RNRGKLNVHYKRVHERIRT 58
+ C +CG L +H +HTGE+P+ C C K+F +N G +N H+RI T
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN------HQRIHT 66
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDN 139
EK Y C CG F++ + L H+ H K +KC C K ++ S L H + HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNS 166
+ C C K ++ S L +H + HT Y C CGK F L H+ H S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
Y C CGK F + L +H+ H + C C F L H + H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHK 106
QC C R FS +LT HIRTHT EK + C++CG +FA+ H+
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKD 162
F+C C + ++ +L HI+THT + C+ICG+ F + KRH+D
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSF 39
F+C C L HI HTGE+P C +C + F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGF 179
+ C IC ++F + +L H TH F C++C F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++P+ C C SFR +G L H K VH + ++CN CG F+ +NL H R H+ EK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
+ ++C+ C +F K NL H HT EK Y C +CGA+F + A L H H+ K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHE 54
+KC +C A + +L H +HTGE+P+ C++C F L H R+H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHS 69
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 111 DIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNS 166
D +KC+ C+ + NL H HT Y C ICG F LK H H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197
Y C+ C F L HK H + C +C F +L H + HS P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C CGA +L+ H IH+GE+P
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 55 RIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAE--FAQWATLYNHKFTH 109
RIR+H C+H CG+ + S+L H RTHT EK + C G E FA+ L H+ TH
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTH 164
C K Y S+L+ H +THT + C + C + F + L RH+ TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 147 CGKDFGTARYLKRHKDTHNSVNTFVC--EVCNTGFKVKKHLTQHYKSH 192
CGK + + +LK H TH F C + C F L++H ++H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 5 PQCGALLKNIWSLREHIMIHTGERPHVCH--VCSKSFRNRGKLNVHYKRVH 53
P CG L+ H HTGE+P C C + F +L+ H +R H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH-RRTH 72
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNH---KFTHNDIKFKCNYCEKVYNNPSNLQRHIK 134
RTH+ EK Y C +C A F Q T+ H K T N KF C +C+ V S+L H++
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 24 HTGERPHVCHVCSKSFRNRGKLNVHYKRVH-ERIRTHQCNHCGRAFSDKSNLTVHIR 79
H+GE+P+ C++C F G + +H + H E + C HC + KS+L VH+R
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 58 THQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH 105
+ +C++CG+ F L +H+RTHT EK Y CE C AQ +L H
Sbjct: 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHE 54
+C CG ++ + L H+ HTGE+P+ C C + + L H +R H+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 115 KCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
+C+YC K + + L H++THT Y CE C L+ H + H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 26 GERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTH 81
G C C K FR+ LN+H R H + ++C C A + K++L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHL-RTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 144 CEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
C CGK F + YL H TH + CE C K L H + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 23 IHTGERPHVCHVCSKSFRNRGKLNVHYKRVHER---IRTHQCNHCGRAFSDKSNLTVHI 78
HTGE+P+ C C K+FR + L++H+KR H+ C+ CG+ F+ ++ + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 23/84 (27%)
Query: 79 RTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTD 138
RTHT EK Y C C F Q L D+ F K Y++P+ +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLL--------DMHF------KRYHDPNFVP-------- 45
Query: 139 NSLYICEICGKDFGTARYLKRHKD 162
+ ++C CGK F + RH D
Sbjct: 46 -AAFVCSKCGKTFTRRNTMARHAD 68
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 51 RVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTD----EKKYMCELCGAEFAQWATLYNH 105
R H + + C+HC + F K L +H + + D ++C CG F + T+ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 134 KTHTDNSLYICEICGKDFGTARYL----KRHKDTHNSVNTFVCEVCNTGFKVKKHLTQH 188
+THT Y C C K F + L KR+ D + FVC C F + + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKV 122
CG++F+ KS H+ H + Y C +CG +F L H H IK ++CN C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 123 YNNPSNLQRHIKTHTDN 139
+ + RH+ + T +
Sbjct: 75 FMWRDSFHRHVTSCTKS 91
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+G++ + C C KSF ++ + + H +H +R + C CG+ F K +L H++ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 85 KKYMCELCGAEFAQWATLYNH 105
K Y C +C F + + H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 6 QCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCG 65
QCG + H+ +H G RP+ C VC K F+ + L H K +H I+ ++CN C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICA 72
Query: 66 RAFSDKSNLTVHIRT 80
+ F + + H+ +
Sbjct: 73 KRFMWRDSFHRHVTS 87
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 137 TDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMFI 196
+ + LY C+ CGK F RH H + + C VC FK+K HL H K H+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT--- 61
Query: 197 PPEQFPGLDPTSCNM 211
G+ P CN+
Sbjct: 62 ------GIKPYECNI 70
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 110 NDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNT 169
D + C C K + + S RH+ H Y C +CGK F +L H H +
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 170 FVCEVCNTGFKVKKHLTQHYKS 191
+ C +C F + +H S
Sbjct: 66 YECNICAKRFMWRDSFHRHVTS 87
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 82 TDEKKYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
+ +K Y C+ CG F + H H ++ + C C K + +L H+K HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 141 LYICEICGKDF 151
Y C IC K F
Sbjct: 65 PYECNICAKRF 75
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVH 48
+ C CG K L H+ IHTG +P+ C++C+K F R + H
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
ERP C+ C K++R+ L+ H +R H R C CG+ F D+S + H++ H ++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHE 54
F C CG ++ L H H G RP C C K FR++ ++N H K VH+
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQ 56
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNS 166
F CN+C K Y + S L RH + H C CGK F + RH H +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHND 111
CN CG+ + D S L+ H R H + C CG F + + H H +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIKFK-CNYCEKVYNNPSNLQRHIKTHTD 138
E+ + C CG + + L H+ H + + C C K + + S + RH+K H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192
+ C CGK + A L RH+ H C C F+ + + +H K H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKS 191
YICE CG LK+H TH V + C CN FK K +LT+H KS
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 4 CPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYK 50
C +CG K L++HI HT RP+ C C+ SF+ +G L H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 86 KYMCELCGAEFAQWATLYNHKFTHNDIK-FKCNYCEKVYNNPSNLQRHIKT 135
KY+CE CG + + L H TH D++ + C YC + NL +H+K+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRH 160
K+ C C PS L++HI+THTD Y C C F T L +H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 19/45 (42%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH 105
C CG S L HIRTHTD + Y C C F L H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKK 86
++C C + L H R H +R + C +C +F K NLT H+++ KK
Sbjct: 2 YICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 35 CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELC 92
C + F NR LN H K H ++ C CG++F+ K +L H++ H+D + Y+CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 93 G 93
G
Sbjct: 75 G 75
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 92 CGAEFAQWATLYNHK-FTHNDIK-FKCN--YCEKVYNNPSNLQRHIKTHTDNSLYICEIC 147
CG F+ L +HK + H K F C C K +N +L+ H+K H+D YICE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 148 GKDFG 152
G G
Sbjct: 75 GPSSG 79
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 147 CGKDFGTARYLKRHKD-THNSVNTFVCE--VCNTGFKVKKHLTQHYKSHS 193
CG+ F +YL HK H +F C C F KKHL +H K HS
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 119 CEKVYNNPSNLQRHIK-THTDNSLYICE--ICGKDFGTARYLKRHKDTHNSVNTFVCEV 174
C ++++N L H K H + C CGK F ++LK H H+ ++CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 52 VHERIRTHQC--NHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTH 109
V ++R + C C R FS LT HIR HT +K + C +C F++ L H TH
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 28 RPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHT 82
RP+ C V C + F +L H R+H + QC C R FS +LT HIRTHT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 142 YIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193
Y C E C + F + L RH H F C +C F HLT H ++H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTH 164
C++ ++ L RHI+ HT + C IC ++F + +L H TH
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 2 FKCP--QCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTH 59
+ CP C L HI IHTG++P C +C ++F L H IRTH
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-------IRTH 72
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 22 MIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTH 81
+I G ++C VC +S+ L H+ +H + + C +C + F T H H
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 82 TDEKKYMCELCGAEFAQWATLYNH 105
T E++Y C CG F + + +H
Sbjct: 74 TGERRYQCLACGKSFINYQFMSSH 97
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 112 IKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFV 171
+ + C C++ Y ++L+RH H+ Y C C K F A Y +H+ H +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 172 CEVCNTGFKVKKHLTQHYKS 191
C C F + ++ H KS
Sbjct: 81 CLACGKSFINYQFMSSHIKS 100
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSF---RNRGKLNVHYKRVHERIRT 58
+ C C + SLR H IH+ E+ + C C K F R K +H H R
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH----HTGERR 78
Query: 59 HQCNHCGRAFSDKSNLTVHIRT------HTDEKKYMCELCGA-EFAQWATL 102
+QC CG++F + ++ HI++ D K Y C + + Q+A L
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAYL 129
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 40 RNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQW 99
R + K + HY+ + + + C C R++ ++L H H+ EKKY C C F
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA 63
Query: 100 ATLYNHKFTH-NDIKFKCNYCEKVYNNPSNLQRHIKT 135
H+ H + +++C C K + N + HIK+
Sbjct: 64 EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 119 CEKVYNNPSNLQRHIKTHTDNSLYIC--EICGKDFGTARYLKRHKDTHNSVNTFVCEV-- 174
C YN LQ H+ HT + C E C K F + +L RH TH F C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 175 CNTGFKVKKHLTQHY 189
C+ F K ++ +H+
Sbjct: 71 CDLRFTTKANMKKHF 85
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 29/103 (28%)
Query: 5 PQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHC 64
CGA W L+ H+ HTGE+P C + G C
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPC-------KEEG--------------------C 41
Query: 65 GRAFSDKSNLTVHIRTHTDEKKYMCEL--CGAEFAQWATLYNH 105
+ F+ +LT H THT EK + C+ C F A + H
Sbjct: 42 EKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 27/99 (27%)
Query: 64 CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVY 123
CG A++ L H+ HT EK + C+ G CEK +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEG-------------------------CEKGF 45
Query: 124 NNPSNLQRHIKTHTDNSLYICEICGKD--FGTARYLKRH 160
+ +L RH THT + C+ G D F T +K+H
Sbjct: 46 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 142 YICEI--CGKDFGTARYLKRHKDTHNSVNTFVC--EVCNTGFKVKKHLTQHYKSHS 193
YIC CG + L+ H H F C E C GF HLT+H +H+
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH 105
C C RAF+ + +L H R+HT+EK Y C LC F + L H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQH 188
++CE+C + F +LKRH +H + + C +CN F + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVN 168
F C C + + +L+RH ++HT+ Y C +C + F L RH +S N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 169 TFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197
+FVCEVC F ++HL +HY+SH+ P
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKP 30
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
F C C L+ H HT E+P+ C +C+++F R L H +++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 31 VCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVH 77
VC VC+++F + L HY R H + + C C RAF+ + L H
Sbjct: 4 VCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 87 YMCELCGAEFAQWATLYNHKFTH-NDIKFKCNYCEKVYNNPSNLQRHI-KTHTDN 139
++CE+C FA+ L H +H N+ + C C + + L RH K H+ N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + C+ CG+AFS KS L +H+RTH+ EK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++ + C+ CG+AF KS L +H+RTHT EK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ H+CN+CG+AFS KS L +H R HT E
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C CG+AF+ K+NLT H R HT EK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C +CG +L +H IHTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK Y C CG FAQ A L H+ H K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + CN CG+ FS KS L+ H RTHT EK
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK Y C CG F+Q + L H+ TH K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ +QCN CG+AFS S L H R HT EK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C +CG L H +HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
++CN C K ++ S L RH + HT
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ ++CN C +AF+ KSNL VH RTHT E
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDNS 140
++CN C+K +N SNL H +THT S
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGES 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
++ + CN CG+AF KS L +H RTHT E
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHT 82
+ ++C+ CG+AFS K +L VHIR HT
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C QCG SL HI +HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVH 53
E+P+ C C K+F +G L VH RVH
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHI-RVH 34
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C+ C +AF+ KSNL VH RTHT EK
Sbjct: 14 ECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHT 137
F+C+ C+K +N SNL H +THT
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHT 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.012, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + CN CG+ FS KS L VH R HT EK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+GE+P+ C+ C K F ++ L VH +R+H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVH-QRIH 33
Score = 26.9 bits (58), Expect = 9.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 142 YICEICGKDFGTARYLKRHKDTH 164
Y C CGKDF + YL H+ H
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIH 33
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++HQC+ CGR F+ KS+L H R HT EK
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C CG+AF+D+SNL H + HT EK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C +CG + +L H IHTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R ++C+ CG+AF+ KS L +H R HT EK
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C +CG +L H IHTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+AFS S L H R HT EK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG L H IHTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
+KCN C K ++ S L RH + HT
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK Y C CG F+Q + L H+ H K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++ + CN CG+AFS S+LT H HT EK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+ C +CG SL H +IHTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 85 KKYMCELCGAEFAQWATLYNHKFTHNDIK 113
K YMC CG F+ +++L H+ H K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
QC CG+AF+ S+L H+R HT EK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.023, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ ++C CG+AF KS L +H RTHT E
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R + C CG+AF+D+SNL H + HT EK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYK 50
ERP++C VC K+F +R L H K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQK 33
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C HCG++F K NL H R HT EK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+AFS +S+LT H HT +K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C QCG SL H IHTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R ++C CG+AF KS+L H R+HT EK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 26 GERPHVCHVCSKSFRNRGKLNVHYKRVHER-IRTHQCNHCGRAFSDKSNLTVHIR 79
GE + C VCS+ + + HY H+R ++ + C C + F+ K N+T H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 114 FKCNYCEKVYNNPSNLQRH-IKTHTDN-SLYICEICGKDF 151
++C C +VY + SN RH + +H N +Y C C K+F
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF 50
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.044, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ + CN CG+AF KS L +H R HT E
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+G++P+VC+ C K+F + +L +H +R+H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIH-ERIH 33
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 169 TFVCEVCNTGFKVKKHLTQHYKSHS 193
+FVCEVC F ++HL +HY+SH+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C C RAF+ + +L H R+HT+EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 142 YICEICGKDFGTARYLKRHKDTH 164
++CE+C + F +LKRH +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+AF SNLT H HT EK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + +L H +IHTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ F+ S+LT H R HT EK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRT-HTDEK 85
+T+QC +C + F+D SNL HI+T H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKT 135
++C YCEK + + SNL+ HIKT
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKT 24
>pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 880
Score = 33.9 bits (76), Expect = 0.067, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 3 KCPQCGALLKNIWSLREHI-----MIHTGERPHVCHVCSKSFRNRGKLNV------HYKR 51
KCP CG L N HI +IH G H+ + R G++ + Y R
Sbjct: 57 KCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSR 116
Query: 52 VHERIRTHQCNHCGR--AFSDKSNLTVHIRTHTDEKKYMCEL 91
++ I+ + R + K+ + + H +EK+Y +L
Sbjct: 117 IYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKIKL 158
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.070, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+AF +S+L +H TH+ EK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVH 48
E+P+ C+ C K+FR R L +H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH 31
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R H+CN CG++F ++L H R HT EK
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++ +QC++CGR+FSD ++ H+ TH +K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTH 136
++C+YC + +++P++ RH++TH
Sbjct: 4 YQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.079, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 55 RIRTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
R + ++C+ CG+AF S L VH RTH+ E
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.083, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+GE+P+ C C KSF RG L VH +R+H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH-ERLH 33
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHT 82
+ +QC CG++FS + +L VH R HT
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHT 34
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 28 RPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCN 62
+P++C C K F LN H K+VH R H+C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 61 CNHCGRAFSDKSNLTVHIR-THTDEKKYMCEL 91
C CG+ FS +L HI+ HT E+ + C++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 142 YICEICGKDFGTARYLKRH-KDTHNSVNTFVCEVCNTG 178
YIC+ CGK F +L H K H S C+V +G
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG+AF+ KS L++H + HT EK
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
F+C +CG +L H IHTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R ++C+ CG+AF KS L++H R H EK
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ H+C CG++FS S L VH R HT E
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+CN C + F+ S+LTVH R HT EK
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1 MFKCPQCGALLKNIWSLREHIMIHTGERP 29
+FKC +C SL H IHTGE+P
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
FKCN C+K + S+L H + HT
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.099, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHT 82
R ++C CG++F K +LT+H R HT
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHT 34
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+G+R + C C KSFR +G L +H +R+H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLH-ERIH 33
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHI-RTHTDEKK 86
H+C VC +SF ++G H + +H + C +C F LT HI + H E +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHA-AQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 87 YMCELCGAEFAQWATLYNH-KFTHNDIKFKCNYCEKVYNNPSNLQRHI 133
++C +CG FA H + H F C YC + + L RHI
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQH 188
++C +CG+ F + +RH ++ F C+ C F LT+H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH 105
H C CG +F+ K H+R + + C+ C A F L H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG+AF KS L +H RTH D+K
Sbjct: 14 KCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEKK 86
+ ++C CG+AF +SNLT H HT EK+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVH 48
T E+P+ C+ C K+FR R L H
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTH 31
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGER 28
+KC +CG + +L H +IHTGE+
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 169 TFVCEVCNTGFKVKKHLTQHYKSHS 193
+FVCEVC F +++L +HY+SH+
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHT 26
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 142 YICEICGKDFGTARYLKRHKDTHN 165
++CE+C + F YLKRH +H
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHT 26
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C C RAF+ + L H R+HT+EK
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++C+ CG+AFS K L H RTH EK
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ +QC+ CG++FS LT H THT EK
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C CG+AFS ++L H R HT EK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
++C +CG L +H +HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.19, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + CN CG+AF+ KS L VH HT K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVHERIR 57
+GE+P+ C+ C K+F + +L VH K VH ++
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH-KGVHTGVK 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 82 TDEKKYMCELCGAEFAQWATLYNHKFTHND----IKFKCNYCEKVYNNPSNLQRH-IKTH 136
+ CE+CG Q A+L H+ H + ++F C +C K + P ++ H K+H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 137 TDNSLYICEICGKDFG 152
L E G G
Sbjct: 63 PALLLAPQESSGPSSG 78
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTD---EKKYMCELCGAEFAQWATLYNHK 106
QC CG K++L H R H + ++ CE CG F + ++ H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ FS S L+ H + HT EK
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + L +H IHTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 111 DIKFKCNYCEKVYNNPSNLQRHIKTHT 137
+ ++KCN C KV++ S L +H K HT
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHT 36
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C+ CG++F+ KS L VH + HT EK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVH 48
E+P+ C +C KSF + +L+VH
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH 31
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C+ CG+AF+ KS L +H ++HT E+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTH 81
+ ++CN CG+AF KS L VH RTH
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTH 35
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++ + C HC R F+D L H+R HT EK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDN 139
+ C +C++ + +P LQRH++ HT
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 0.24, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC CGA + LR H++IHTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTH 109
EK Y CE CGA F Q A L H H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.24, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R +CN CG+ F +S+L H+R H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
FKC +CG + L H+ IHTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG+AF +L H+R HT EK
Sbjct: 14 KCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 100 ATLYNHKFTH-NDIKFKCNYCEKVYNNPSNLQRHIK 134
A L H+ H D FKCNYC PSNL +H+K
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 16 SLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+LR H IH +RP C+ CS + L+ H K+ H
Sbjct: 24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 87 YMC--ELCGAEFAQWATLYNHKFTH-NDIKFKCNY--CEKVYNNPSNLQRHIKTHT 137
Y+C E CG F + L H+F+H + ++C + C+K ++ PS L+RH K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 30 HVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTHT 82
+VCH C K+F+ +L VH + H + ++C H C + FS S L H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
CN CG++F KS+L H R HT EK
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVH 53
E+P++C+ C KSF + LN H +R+H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH-RRIH 35
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 87 YMC--ELCGAEFAQWATLYNHKFTH-NDIKFKCNY--CEKVYNNPSNLQRHIKTHT 137
Y+C E CG F + L H+F+H + ++C + C+K ++ PS L+RH K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 30 HVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTHT 82
+VCH C K+F+ +L VH + H + ++C H C + FS S L H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 169 TFVCEVCNTGFKVKKHLTQHYKSHS 193
+FVCEVC F ++ L +HY+SH+
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHT 26
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C C RAF+ + L H R+HT+EK
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|A Chain A, Rnap At 3.2ang
pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 880
Score = 31.6 bits (70), Expect = 0.32, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 3 KCPQCGALLKNIWSLREHI-----MIHTGERPHVCHVCSKSFRNRGKLNV------HYKR 51
KCP CG L N HI +IH G HV + R G++ + Y R
Sbjct: 57 KCPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSR 116
Query: 52 VHERIRTHQCNHCGR--AFSDKSNLTVHIRTHTDEKKYMCEL 91
++ I+ + R + K+ + + H EK++ +L
Sbjct: 117 IYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKL 158
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVH 48
T E+P C C KSFR R LN H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH 31
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
F+C C + +L H MIHTGE+P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ ++C+ CG++F KS L VH R HT E
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R H+C+ CG+ F SN H R HT EK
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C+ CG+ F+ K+NL +H + HT E+
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGER 39
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
F C +CG + + +L H IHTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.47, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ + C CG+AF+ S L++H R HT E
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.8 bits (68), Expect = 0.67, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVH 53
+GE+P+VC C K+F L++H +RVH
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH-RRVH 33
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C C A + K+NL VH+R HT EK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.51, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDE 84
++C+ CG+AF+ K L H RTH E
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C CG+AF D S+ T H R HT ++
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + S +H +HTG+RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.55, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG++FS S L H R HT EK
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEK 39
Score = 27.3 bits (59), Expect = 7.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
F+C +CG L H IHTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C+ C ++FS K L VH R HT EK
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.58, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C+ CG+AFS + +L+VH R H+ +K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVH 53
E+P+ C VC K+F +R L+VH +R+H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVH-QRIH 35
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++C+ CG+ FS S+L H R HT EK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK Y C++CG EF+Q + L H+ H K
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 142 YICEICGKDFGTARYLKRHKDTHNS 166
Y C++CGK+F + +L+ H+ H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC CG L+ H +HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.61, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++ + C+ C + FS KS L VH R+HT K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C C +AF+ K++L H +THT EK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHSMFIP 197
+ C+VC+ F K HL QH K+H+ P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK Y C++C F Q A L H+ TH K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYK 50
E+P+ C VCSK+F + L H K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQK 33
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.62, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C+ C +AFS KS L VH +TH +EK
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ F S L+ H R HT EK
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + ++ L H IHTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
+KCN C KV+ + S L RH + HT
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTG 37
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG+ FS +S L VH + HT EK
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
FKC +CG +L H +HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYK 50
E+P C C K F R LNVH+K
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHK 33
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 30.4 bits (67), Expect = 0.80, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVH 53
++P+ C +C K ++NR L+ HY H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C CG+AF+ +SNL H + HT +K
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + + L H +IHTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ + CN CG+AF ++L H+R HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 23/97 (23%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEKKY-----MCELCGAEFAQWATL-YNHKFTHNDIKF 114
C+ C R D +N K+Y +C CG F L Y+ + T
Sbjct: 109 CDDCLRELFDPTN-----------KRYXYPFIVCTNCGPRFTIIEDLPYDRENTTXKEFP 157
Query: 115 KCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDF 151
C++C Y +P N + H + C +CG +
Sbjct: 158 XCDFCRSEYEDPLNRRYHAEPTA------CPVCGPSY 188
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
QC C R FS +L H RTHT EK
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG+ F+ NL H+R H+ EK
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGER 28
KC +CG +L+ H+ IH+GE+
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + C++CG+AF + L H R HT EK
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 142 YICEICGKDFGTARYLKRHKDTH 164
Y+C+ CGK FG + L RH+ H
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIH 35
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ F+ S+L H R HT K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDN 139
+KCN C KV+ S+L RH + HT
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGG 38
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
QC CG+ F+ S+L H R HT EK
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK + CE CG F Q + L++H+ H K
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
F+C +CG L H +HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + ++L H +HTGERP
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C CG+ ++ K NL +H + HT E+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
C CG+AFSD L H R HT EK
Sbjct: 14 DCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
F C CG + L +H IHTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C+ CG++F+ KS L +H + HT E+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ F+ S+L H HT EK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
+KCN C KV+ S+L RH HT
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 25 TGERPHVCHVCSKSFRNRGKLNVH 48
+GE+P+VC C K+F + +L VH
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVH 29
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHT 82
+ + C+ CG+AF+ KS L VH HT
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
FKC +CG + L +H +IH GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ F+ S+L H HT EK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
+KCN C KV+ S+L RH HT
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ + C CG+AF S L H R HT EK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+ C +CG + L+EH IHTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRT-HTDEK 85
+T+QC +C +D SNL HI+T H+ EK
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKT 135
++C YCE + SNL+ HIKT
Sbjct: 3 YQCQYCEXRSADSSNLKTHIKT 24
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG++++ + +LT H R HT EK
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
FKC +CG L +H +HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
FKC +CG L H +HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK + CE CG F Q + L++H+ H K
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 60 QCNHCGRAFSDKSNLTVHIRTHTDEK 85
+C CG+ F+ S L H R HT EK
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ F+ S+L H HT EK
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG + L H IHTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++CN CG+ F+ S+L H R HT K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHNDIK 113
EK Y C CG F Q + L NH+ H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRT-HTDEK 85
+T+QC +C +D SNL HI+T H+ EK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C+ C ++F S+LTVH R HT EK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYKRVH 53
E+P+ C VC KSFR L VH +R+H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVH-QRIH 35
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQ 98
H+C C R F D +NL H R+ D KK + +L ++Q
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSK-DHKKRLKQLSVEPYSQ 89
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRT-HTDEK 85
+T+QC +C +D SNL HI+T H+ EK
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 4 CPQCGALLKNIWSLREHIMIHTGERPH 30
C CG + ++++ L H + H+GE+P+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHS 193
+ C+VC F+V HL QH+ HS
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHS 36
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVHYK 50
E P++C C KSF RG L VH +
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQR 32
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ + C CG+AF KS+ H R HT E
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTD 138
F C YC KV+ +LQ H++ HT+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
C +C + F K +L H+R HT+EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 61 CNHCGRAFSDKSNLTVHIRTHTDEK 85
CN CG+ F S L+ H R H+ EK
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG L EH IHTG RP
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRT-HTDEK 85
+T+QC +C +D SNL HI+T H+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C CG+ ++ + NL +H R H EK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
++H C+ CG+ F S L +H R H EK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 170 FVCEVCNTGFKVKKHLTQHYKSHSMFIPPE 199
+ C C F ++KHL QH K+H+ P
Sbjct: 13 YECSKCQATFNLRKHLIQHQKTHAAKSGPS 42
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C+ C +AFS ++LT H R H+ EK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ H+C+ C + FS S L +H R HT E
Sbjct: 9 KLHECSECRKTFSFHSQLVIHQRIHTGE 36
>pdb|3MJ9|L Chain L, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
pdb|3MJ8|L Chain L, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
pdb|3MJ8|A Chain A, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
Length = 213
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 155 RYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLT 186
YL D S NTF+C+V + G V+K L+
Sbjct: 177 SYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 84 EKKYMCELCGAEFAQWATLYNHKFTHND 111
EK Y CE+CG F TL +H H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+ C CG +++ +L+ H+ IHTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 85 KKYMCELCGAEFAQWATLYNHKFTHN 110
K Y+CE CG F Q + L NH H+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 114 FKCNYCEKVYNNPSNLQRHIKTHTDN 139
F C C + +N RH+K HTD
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDT 33
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 168 NTFVCEVCNTGFKVKKHLTQHYKS 191
+++VC VCN F L++H +S
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRS 138
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 168 NTFVCEVCNTGFKVKKHLTQHYKS 191
+++VC VCN F L++H +S
Sbjct: 97 SSYVCNVCNARFSTMSALSEHLRS 120
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
R + CN CG+ F S+L H++ H EK
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDEK 85
+ ++C CG+ + + +L H R HT EK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 57 RTHQCNHCGRAFSDKSNLTVHIRTHTDE 84
+ H+C HC + F+ NL H++ H +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 2 FKCPQCGALLKNIWSLREHIMIHTGERP 29
+KC +CG L H M+HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 27 ERPHVCHVCSKSFRNRGKLNVH 48
E+P C +C KSF R +LN H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH 31
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 56 IRTHQCNHCGRAFSDKSNLTVHIRTHTD 83
+R + C+ CG+ FS K + H R HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.9 bits (58), Expect = 9.1, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 85 KKYMCELCGAEFAQWATLYNHKFTH 109
K ++C++CG +F TL +HK H
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLH 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,287,363
Number of Sequences: 62578
Number of extensions: 297712
Number of successful extensions: 2191
Number of sequences better than 100.0: 210
Number of HSP's better than 100.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 1082
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)