Query psy11591
Match_columns 220
No_of_seqs 158 out of 1459
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 22:36:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 100.0 4.3E-32 9.3E-37 195.3 5.1 134 58-192 130-266 (279)
2 KOG1074|consensus 100.0 1.7E-31 3.7E-36 216.2 3.0 141 59-199 606-937 (958)
3 KOG2462|consensus 99.9 8.2E-29 1.8E-33 178.4 4.7 133 28-163 129-265 (279)
4 KOG3608|consensus 99.9 2.3E-25 5E-30 165.1 9.6 190 3-195 181-378 (467)
5 KOG3623|consensus 99.9 2.3E-24 4.9E-29 172.9 6.5 106 2-107 211-330 (1007)
6 KOG3608|consensus 99.9 1.2E-22 2.6E-27 150.8 10.9 187 4-193 139-345 (467)
7 KOG3623|consensus 99.9 8.2E-22 1.8E-26 158.4 6.7 77 2-79 241-330 (1007)
8 KOG1074|consensus 99.8 1E-20 2.3E-25 154.2 3.6 170 1-171 605-937 (958)
9 KOG3576|consensus 99.7 1.1E-17 2.3E-22 115.7 4.2 125 27-168 115-239 (267)
10 KOG3576|consensus 99.7 5.9E-18 1.3E-22 117.0 2.6 115 83-197 114-240 (267)
11 PLN03086 PRLI-interacting fact 99.5 1.6E-13 3.5E-18 111.1 8.1 145 30-193 408-564 (567)
12 PLN03086 PRLI-interacting fact 99.4 1.4E-12 3E-17 105.8 8.4 144 3-166 409-565 (567)
13 PHA00733 hypothetical protein 99.2 4.5E-11 9.8E-16 79.7 5.9 55 138-194 70-124 (128)
14 PHA00733 hypothetical protein 99.2 2.5E-11 5.4E-16 80.9 4.5 93 72-166 26-124 (128)
15 PHA02768 hypothetical protein; 99.0 1.2E-10 2.6E-15 64.2 2.1 43 142-186 6-48 (55)
16 KOG3993|consensus 99.0 2.1E-11 4.6E-16 93.5 -2.5 193 2-195 268-484 (500)
17 KOG3993|consensus 99.0 7.2E-11 1.6E-15 90.7 -1.1 171 30-201 268-462 (500)
18 PHA02768 hypothetical protein; 98.9 5.3E-10 1.2E-14 61.7 1.6 42 114-157 6-47 (55)
19 PF13465 zf-H2C2_2: Zinc-finge 98.8 4E-09 8.7E-14 49.8 1.9 24 157-180 2-25 (26)
20 PF13465 zf-H2C2_2: Zinc-finge 98.7 9.6E-09 2.1E-13 48.5 2.3 26 128-153 1-26 (26)
21 PHA00616 hypothetical protein 98.7 4.2E-09 9E-14 55.3 1.1 32 142-173 2-33 (44)
22 PHA00616 hypothetical protein 98.6 4.8E-08 1E-12 51.3 2.6 35 1-35 1-35 (44)
23 PHA00732 hypothetical protein 98.5 1.3E-07 2.7E-12 57.4 2.8 44 114-163 2-46 (79)
24 PF05605 zf-Di19: Drought indu 98.4 7E-07 1.5E-11 50.3 3.9 51 141-194 2-54 (54)
25 PHA00732 hypothetical protein 98.3 5.4E-07 1.2E-11 54.6 2.6 45 141-191 1-46 (79)
26 PF05605 zf-Di19: Drought indu 98.2 3.2E-06 7E-11 47.6 4.2 49 30-81 3-52 (54)
27 PF00096 zf-C2H2: Zinc finger, 98.0 2.4E-06 5.1E-11 39.0 1.1 22 142-163 1-22 (23)
28 PF00096 zf-C2H2: Zinc finger, 98.0 5.9E-06 1.3E-10 37.7 2.1 22 170-191 1-22 (23)
29 PF13894 zf-C2H2_4: C2H2-type 97.9 4.6E-06 9.9E-11 38.4 1.5 23 170-192 1-23 (24)
30 PF13912 zf-C2H2_6: C2H2-type 97.9 5.1E-06 1.1E-10 39.5 1.3 25 169-193 1-25 (27)
31 PF12756 zf-C2H2_2: C2H2 type 97.8 1.4E-05 2.9E-10 51.2 2.2 73 115-192 1-73 (100)
32 PF13894 zf-C2H2_4: C2H2-type 97.8 2.7E-05 5.9E-10 35.6 2.4 23 142-164 1-23 (24)
33 COG5189 SFP1 Putative transcri 97.7 1.3E-05 2.9E-10 60.1 0.9 51 139-189 347-418 (423)
34 PF13912 zf-C2H2_6: C2H2-type 97.6 4.1E-05 8.8E-10 36.3 1.7 25 141-165 1-25 (27)
35 PF12756 zf-C2H2_2: C2H2 type 97.6 5.4E-05 1.2E-09 48.4 2.6 22 32-53 2-23 (100)
36 PF09237 GAGA: GAGA factor; I 97.4 0.00011 2.4E-09 39.5 2.0 31 167-197 22-52 (54)
37 PF09237 GAGA: GAGA factor; I 97.3 0.00026 5.7E-09 38.1 2.8 33 137-169 20-52 (54)
38 PF13909 zf-H2C2_5: C2H2-type 97.3 0.00011 2.5E-09 33.7 1.2 23 170-193 1-23 (24)
39 smart00355 ZnF_C2H2 zinc finge 97.3 0.00019 4.2E-09 33.3 1.9 23 170-192 1-23 (26)
40 COG5189 SFP1 Putative transcri 97.2 0.0001 2.2E-09 55.5 0.6 53 110-162 346-419 (423)
41 PRK04860 hypothetical protein; 97.1 0.00031 6.8E-09 48.7 1.8 40 140-183 118-157 (160)
42 PF12874 zf-met: Zinc-finger o 97.0 0.00034 7.4E-09 32.4 1.0 23 170-192 1-23 (25)
43 smart00355 ZnF_C2H2 zinc finge 96.9 0.0012 2.6E-08 30.5 2.7 23 2-24 1-23 (26)
44 PF13909 zf-H2C2_5: C2H2-type 96.7 0.0012 2.7E-08 30.1 1.8 23 142-165 1-23 (24)
45 KOG2785|consensus 96.7 0.0072 1.6E-07 47.1 6.9 163 29-191 3-242 (390)
46 KOG1146|consensus 96.6 0.00051 1.1E-08 61.1 0.2 51 32-82 439-489 (1406)
47 PRK04860 hypothetical protein; 96.5 0.0022 4.8E-08 44.5 2.8 38 113-154 119-156 (160)
48 PF12874 zf-met: Zinc-finger o 96.5 0.0017 3.6E-08 30.0 1.5 22 142-163 1-22 (25)
49 PF12171 zf-C2H2_jaz: Zinc-fin 96.4 0.0014 3.1E-08 30.9 1.0 22 170-191 2-23 (27)
50 KOG2231|consensus 95.9 0.04 8.7E-07 46.7 7.4 94 41-137 126-236 (669)
51 PF12171 zf-C2H2_jaz: Zinc-fin 95.5 0.0029 6.4E-08 29.8 -0.4 21 142-162 2-22 (27)
52 KOG2482|consensus 95.4 0.078 1.7E-06 40.9 6.6 106 86-191 195-356 (423)
53 KOG2785|consensus 95.3 0.041 9E-07 43.0 5.1 53 112-164 165-243 (390)
54 KOG2893|consensus 95.1 0.0054 1.2E-07 44.6 -0.2 41 32-77 13-53 (341)
55 KOG1146|consensus 95.0 0.0091 2E-07 53.7 0.8 53 139-191 463-540 (1406)
56 KOG4173|consensus 94.6 0.016 3.5E-07 41.2 1.1 73 114-189 80-166 (253)
57 PF13913 zf-C2HC_2: zinc-finge 94.4 0.045 9.7E-07 25.2 2.1 18 3-21 4-21 (25)
58 KOG2231|consensus 94.4 0.098 2.1E-06 44.5 5.4 119 61-190 118-260 (669)
59 smart00451 ZnF_U1 U1-like zinc 94.2 0.037 7.9E-07 27.6 1.7 23 169-191 3-25 (35)
60 KOG2482|consensus 94.1 0.19 4.1E-06 38.9 5.8 148 16-163 130-356 (423)
61 PF12013 DUF3505: Protein of u 94.0 0.16 3.4E-06 33.1 4.8 25 170-194 81-109 (109)
62 KOG2893|consensus 93.9 0.014 3E-07 42.6 -0.3 48 3-54 12-59 (341)
63 COG5236 Uncharacterized conser 93.9 0.14 3.1E-06 39.6 5.0 24 30-53 152-177 (493)
64 TIGR00622 ssl1 transcription f 93.6 0.068 1.5E-06 34.5 2.4 48 144-193 58-105 (112)
65 COG5236 Uncharacterized conser 93.4 0.2 4.3E-06 38.9 5.0 125 59-193 152-305 (493)
66 smart00451 ZnF_U1 U1-like zinc 93.4 0.083 1.8E-06 26.3 2.1 22 141-162 3-24 (35)
67 cd00350 rubredoxin_like Rubred 93.3 0.057 1.2E-06 26.7 1.4 9 114-122 2-10 (33)
68 COG5048 FOG: Zn-finger [Genera 92.9 0.029 6.3E-07 45.6 -0.0 67 140-206 288-360 (467)
69 COG5048 FOG: Zn-finger [Genera 92.9 0.017 3.7E-07 46.9 -1.4 150 28-177 288-454 (467)
70 PF12013 DUF3505: Protein of u 92.6 0.3 6.6E-06 31.7 4.4 54 112-166 10-109 (109)
71 TIGR00622 ssl1 transcription f 91.8 0.27 5.8E-06 31.9 3.3 21 28-48 14-34 (112)
72 PF10571 UPF0547: Uncharacteri 90.7 0.14 3E-06 23.8 0.9 9 171-179 16-24 (26)
73 PF09538 FYDLN_acid: Protein o 90.3 0.2 4.4E-06 32.4 1.8 30 114-154 10-39 (108)
74 COG4049 Uncharacterized protei 90.2 0.18 3.9E-06 27.8 1.2 30 25-54 13-42 (65)
75 PHA00626 hypothetical protein 89.0 0.13 2.9E-06 28.4 0.2 13 168-180 22-34 (59)
76 COG4049 Uncharacterized protei 88.2 0.26 5.6E-06 27.2 1.0 28 138-165 14-41 (65)
77 cd00729 rubredoxin_SM Rubredox 87.7 0.32 7E-06 24.2 1.1 9 114-122 3-11 (34)
78 KOG4173|consensus 87.7 0.34 7.3E-06 34.7 1.5 77 87-165 80-170 (253)
79 PF13719 zinc_ribbon_5: zinc-r 87.6 0.6 1.3E-05 23.7 2.1 9 170-178 26-34 (37)
80 COG1592 Rubrerythrin [Energy p 86.4 0.98 2.1E-05 31.6 3.2 12 165-176 145-156 (166)
81 COG1592 Rubrerythrin [Energy p 86.4 0.46 1E-05 33.2 1.6 25 112-149 133-157 (166)
82 PRK00464 nrdR transcriptional 85.9 0.085 1.8E-06 36.5 -2.2 17 170-186 29-45 (154)
83 PF05290 Baculo_IE-1: Baculovi 85.6 0.35 7.5E-06 32.2 0.7 58 82-155 76-135 (140)
84 PF09986 DUF2225: Uncharacteri 85.5 0.15 3.2E-06 37.5 -1.2 13 170-182 49-61 (214)
85 TIGR02098 MJ0042_CXXC MJ0042 f 85.2 0.8 1.7E-05 23.3 1.8 10 143-152 4-13 (38)
86 PF13717 zinc_ribbon_4: zinc-r 84.5 1.2 2.6E-05 22.4 2.2 12 143-154 4-15 (36)
87 smart00659 RPOLCX RNA polymera 83.3 1.1 2.3E-05 23.8 1.8 10 114-123 3-12 (44)
88 TIGR02300 FYDLN_acid conserved 82.8 0.93 2E-05 30.0 1.7 30 114-154 10-39 (129)
89 KOG2186|consensus 82.1 1 2.2E-05 33.5 1.9 46 114-162 4-49 (276)
90 KOG2186|consensus 81.7 1.4 2.9E-05 32.9 2.4 45 59-106 4-48 (276)
91 TIGR00373 conserved hypothetic 81.1 2.2 4.8E-05 29.8 3.3 34 136-178 104-137 (158)
92 COG2888 Predicted Zn-ribbon RN 80.8 0.81 1.7E-05 25.8 0.8 11 111-121 48-58 (61)
93 PF09986 DUF2225: Uncharacteri 78.7 0.36 7.8E-06 35.5 -1.3 44 28-71 4-61 (214)
94 smart00531 TFIIE Transcription 78.2 2.2 4.8E-05 29.3 2.5 37 27-68 97-133 (147)
95 PRK00398 rpoP DNA-directed RNA 78.0 1.8 4E-05 23.1 1.7 7 142-148 22-28 (46)
96 TIGR00373 conserved hypothetic 77.9 2.3 5.1E-05 29.7 2.6 30 28-67 108-137 (158)
97 TIGR02605 CxxC_CxxC_SSSS putat 77.7 0.29 6.3E-06 26.9 -1.6 29 30-66 6-34 (52)
98 PF06524 NOA36: NOA36 protein; 77.5 0.83 1.8E-05 34.1 0.3 29 166-194 206-234 (314)
99 smart00531 TFIIE Transcription 76.9 4.1 8.8E-05 28.1 3.5 16 139-154 97-112 (147)
100 PRK06266 transcription initiat 76.8 2.8 6.1E-05 29.9 2.8 32 138-178 114-145 (178)
101 PRK06266 transcription initiat 76.5 1 2.2E-05 32.1 0.5 40 21-70 109-148 (178)
102 COG5151 SSL1 RNA polymerase II 76.3 0.82 1.8E-05 35.0 -0.0 49 143-193 364-412 (421)
103 PF02892 zf-BED: BED zinc fing 76.3 3.4 7.4E-05 21.7 2.4 22 140-161 15-40 (45)
104 smart00834 CxxC_CXXC_SSSS Puta 76.2 0.32 7E-06 25.1 -1.6 29 30-66 6-34 (41)
105 smart00734 ZnF_Rad18 Rad18-lik 74.7 3.5 7.7E-05 19.0 1.9 19 143-162 3-21 (26)
106 PF09723 Zn-ribbon_8: Zinc rib 74.5 0.9 2E-05 23.8 -0.2 29 30-66 6-34 (42)
107 PF12760 Zn_Tnp_IS1595: Transp 73.2 2 4.4E-05 22.9 1.0 11 167-177 35-45 (46)
108 PRK09678 DNA-binding transcrip 72.6 0.62 1.3E-05 27.7 -1.2 42 142-185 2-45 (72)
109 smart00614 ZnF_BED BED zinc fi 72.5 3.5 7.5E-05 22.4 1.9 21 142-162 19-44 (50)
110 PF05443 ROS_MUCR: ROS/MUCR tr 71.7 1.7 3.8E-05 29.2 0.6 22 142-166 73-94 (132)
111 PF08274 PhnA_Zn_Ribbon: PhnA 70.8 1.3 2.9E-05 21.3 -0.0 9 169-177 19-27 (30)
112 PF02176 zf-TRAF: TRAF-type zi 70.2 2.8 6E-05 23.6 1.2 21 126-146 23-43 (60)
113 PRK14890 putative Zn-ribbon RN 68.5 2.4 5.1E-05 24.0 0.6 10 112-121 47-56 (59)
114 COG1996 RPC10 DNA-directed RNA 68.1 3.1 6.7E-05 22.6 1.0 10 142-151 7-16 (49)
115 KOG4124|consensus 67.9 0.59 1.3E-05 36.4 -2.4 68 139-206 347-435 (442)
116 KOG2807|consensus 66.9 4.7 0.0001 31.4 2.2 26 168-193 344-369 (378)
117 PF05443 ROS_MUCR: ROS/MUCR tr 64.7 5.5 0.00012 26.9 1.9 25 114-141 73-97 (132)
118 PF04959 ARS2: Arsenite-resist 63.4 3.3 7.2E-05 30.4 0.8 28 113-140 77-104 (214)
119 PF04959 ARS2: Arsenite-resist 62.5 3.2 7E-05 30.5 0.6 31 137-167 73-103 (214)
120 COG4530 Uncharacterized protei 61.7 5.3 0.00011 25.7 1.3 30 114-154 10-39 (129)
121 PF03811 Zn_Tnp_IS1: InsA N-te 61.5 1.6 3.5E-05 22.0 -0.8 30 142-175 6-35 (36)
122 PF09845 DUF2072: Zn-ribbon co 61.3 3.8 8.2E-05 27.4 0.7 13 87-99 2-14 (131)
123 COG1997 RPL43A Ribosomal prote 60.5 6.1 0.00013 24.3 1.4 11 141-151 53-63 (89)
124 PF03604 DNA_RNApol_7kD: DNA d 60.3 3.5 7.6E-05 20.2 0.3 8 142-149 18-25 (32)
125 PRK04023 DNA polymerase II lar 59.0 8.8 0.00019 34.9 2.6 8 170-177 664-671 (1121)
126 KOG2593|consensus 58.4 11 0.00023 30.8 2.8 40 25-68 124-163 (436)
127 PF07754 DUF1610: Domain of un 58.3 3.5 7.5E-05 18.7 0.1 7 2-8 17-23 (24)
128 PRK00432 30S ribosomal protein 58.1 4.4 9.5E-05 22.2 0.5 12 168-179 36-47 (50)
129 COG1998 RPS31 Ribosomal protei 57.2 4.1 8.9E-05 22.0 0.3 10 169-178 37-46 (51)
130 PF13453 zf-TFIIB: Transcripti 55.0 5.1 0.00011 20.7 0.4 18 58-75 19-36 (41)
131 KOG3408|consensus 54.2 9 0.0002 25.2 1.5 25 26-50 54-78 (129)
132 PF12907 zf-met2: Zinc-binding 53.3 12 0.00027 19.4 1.6 11 44-54 19-29 (40)
133 PF14353 CpXC: CpXC protein 52.8 13 0.00027 24.9 2.1 10 60-69 3-12 (128)
134 KOG2593|consensus 52.8 14 0.0003 30.1 2.6 35 113-150 128-162 (436)
135 COG4888 Uncharacterized Zn rib 52.5 2.3 5E-05 26.8 -1.3 13 139-151 20-32 (104)
136 PF15269 zf-C2H2_7: Zinc-finge 52.3 10 0.00022 20.0 1.2 21 170-190 21-41 (54)
137 COG3091 SprT Zn-dependent meta 52.0 7.4 0.00016 26.8 0.9 36 138-178 114-149 (156)
138 PF13878 zf-C2H2_3: zinc-finge 51.8 14 0.00031 19.1 1.8 23 3-25 15-39 (41)
139 KOG3408|consensus 51.6 8.5 0.00019 25.3 1.1 25 167-191 55-79 (129)
140 KOG2907|consensus 51.2 7.4 0.00016 25.2 0.8 11 142-152 103-113 (116)
141 KOG4167|consensus 51.0 5.8 0.00013 34.4 0.3 25 2-26 793-817 (907)
142 PRK14714 DNA polymerase II lar 50.9 14 0.00031 34.5 2.7 11 141-151 692-702 (1337)
143 PF13451 zf-trcl: Probable zin 49.8 14 0.0003 20.2 1.5 18 140-157 3-20 (49)
144 PF14311 DUF4379: Domain of un 48.0 12 0.00027 20.7 1.3 13 114-126 29-41 (55)
145 PF07800 DUF1644: Protein of u 48.0 62 0.0013 22.6 4.8 61 140-202 79-142 (162)
146 COG4957 Predicted transcriptio 47.1 14 0.00031 24.8 1.6 24 142-168 77-100 (148)
147 TIGR01206 lysW lysine biosynth 45.7 14 0.0003 20.6 1.2 8 142-149 23-30 (54)
148 PTZ00255 60S ribosomal protein 45.3 14 0.00029 23.1 1.2 11 141-151 54-64 (90)
149 COG1198 PriA Primosomal protei 44.9 10 0.00023 33.4 0.9 49 114-178 436-484 (730)
150 PF14446 Prok-RING_1: Prokaryo 44.5 9 0.00019 21.3 0.3 9 89-97 8-16 (54)
151 PF07800 DUF1644: Protein of u 44.2 29 0.00063 24.2 2.8 11 71-81 121-131 (162)
152 smart00661 RPOL9 RNA polymeras 43.0 22 0.00047 19.2 1.8 11 169-179 20-30 (52)
153 TIGR00244 transcriptional regu 42.2 3.9 8.5E-05 28.0 -1.6 13 171-183 30-42 (147)
154 KOG2071|consensus 41.8 17 0.00037 30.9 1.7 30 166-195 415-444 (579)
155 PF07975 C1_4: TFIIH C1-like d 41.7 9.6 0.00021 21.0 0.2 27 167-193 19-45 (51)
156 PF15135 UPF0515: Uncharacteri 41.5 28 0.0006 26.2 2.5 59 28-100 111-169 (278)
157 KOG1280|consensus 41.3 22 0.00048 28.1 2.1 25 2-26 80-104 (381)
158 COG1327 Predicted transcriptio 41.2 5.6 0.00012 27.3 -1.0 12 171-182 30-41 (156)
159 KOG1842|consensus 40.3 20 0.00042 29.4 1.7 26 30-55 16-41 (505)
160 PF04780 DUF629: Protein of un 39.8 20 0.00043 29.8 1.8 27 30-56 58-84 (466)
161 smart00440 ZnF_C2C2 C2C2 Zinc 39.6 4.3 9.2E-05 21.0 -1.4 8 170-177 29-36 (40)
162 PF11672 DUF3268: Protein of u 39.4 9.4 0.0002 24.5 -0.1 7 170-176 32-38 (102)
163 PRK03824 hypA hydrogenase nick 39.3 8.3 0.00018 26.1 -0.4 11 59-69 71-81 (135)
164 KOG1280|consensus 39.0 30 0.00065 27.4 2.5 36 113-148 79-116 (381)
165 PF06524 NOA36: NOA36 protein; 38.5 9.9 0.00021 28.7 -0.1 82 81-164 137-232 (314)
166 PF14369 zf-RING_3: zinc-finge 38.0 12 0.00027 18.6 0.2 9 60-68 23-31 (35)
167 PF01286 XPA_N: XPA protein N- 37.9 7.2 0.00016 19.4 -0.6 12 143-154 5-16 (34)
168 TIGR00280 L37a ribosomal prote 37.8 17 0.00036 22.8 0.8 11 141-151 53-63 (91)
169 COG3357 Predicted transcriptio 37.8 16 0.00034 22.7 0.7 14 168-181 57-70 (97)
170 COG1773 Rubredoxin [Energy pro 37.4 14 0.0003 20.7 0.4 15 168-182 2-16 (55)
171 COG3364 Zn-ribbon containing p 36.8 21 0.00046 22.7 1.2 15 141-155 2-16 (112)
172 KOG1842|consensus 36.2 18 0.00039 29.6 1.0 24 142-165 16-39 (505)
173 PF05191 ADK_lid: Adenylate ki 36.2 11 0.00023 19.0 -0.2 9 115-123 3-11 (36)
174 KOG2807|consensus 35.5 47 0.001 26.2 3.0 24 113-136 345-368 (378)
175 PF10537 WAC_Acf1_DNA_bd: ATP- 35.5 45 0.00098 21.4 2.5 36 87-122 4-39 (102)
176 PF07282 OrfB_Zn_ribbon: Putat 35.3 27 0.00059 20.2 1.5 9 141-149 46-54 (69)
177 PF03833 PolC_DP2: DNA polymer 35.2 13 0.00027 33.2 0.0 10 141-150 680-689 (900)
178 smart00154 ZnF_AN1 AN1-like Zi 34.9 14 0.0003 19.0 0.1 10 30-39 13-22 (39)
179 COG1594 RPB9 DNA-directed RNA 34.6 11 0.00024 24.7 -0.3 11 141-151 100-110 (113)
180 COG5151 SSL1 RNA polymerase II 34.2 48 0.001 25.9 2.9 80 28-109 321-411 (421)
181 PF01780 Ribosomal_L37ae: Ribo 33.9 11 0.00025 23.4 -0.3 10 142-151 54-63 (90)
182 KOG4167|consensus 33.8 8.5 0.00018 33.5 -1.2 27 169-195 792-818 (907)
183 PF06220 zf-U1: U1 zinc finger 33.8 36 0.00077 17.3 1.5 11 169-179 3-13 (38)
184 PRK04023 DNA polymerase II lar 33.0 54 0.0012 30.2 3.4 20 198-217 664-683 (1121)
185 PF01363 FYVE: FYVE zinc finge 32.8 20 0.00043 20.8 0.6 9 115-123 11-19 (69)
186 PRK03976 rpl37ae 50S ribosomal 32.7 22 0.00047 22.2 0.7 10 142-151 55-64 (90)
187 PRK03564 formate dehydrogenase 32.3 12 0.00026 29.3 -0.5 13 82-94 208-220 (309)
188 COG1571 Predicted DNA-binding 32.1 30 0.00064 28.4 1.6 30 143-183 352-381 (421)
189 COG1655 Uncharacterized protei 32.1 8.5 0.00018 28.5 -1.3 15 140-154 18-32 (267)
190 PRK14559 putative protein seri 31.3 33 0.00072 30.0 1.9 12 171-182 43-54 (645)
191 TIGR00100 hypA hydrogenase nic 31.2 24 0.00052 23.2 0.8 11 114-124 71-81 (115)
192 PF10276 zf-CHCC: Zinc-finger 31.1 23 0.00051 18.3 0.6 12 140-151 28-39 (40)
193 TIGR00686 phnA alkylphosphonat 30.9 17 0.00036 23.5 0.0 12 169-180 19-30 (109)
194 PF01428 zf-AN1: AN1-like Zinc 30.9 22 0.00047 18.5 0.5 13 140-152 12-24 (43)
195 PF00301 Rubredoxin: Rubredoxi 30.6 17 0.00036 19.6 0.0 14 169-182 1-14 (47)
196 PRK12380 hydrogenase nickel in 30.2 25 0.00054 23.0 0.8 10 114-123 71-80 (113)
197 cd00730 rubredoxin Rubredoxin; 29.5 24 0.00052 19.3 0.5 13 169-181 1-13 (50)
198 KOG3002|consensus 29.5 57 0.0012 25.6 2.7 76 112-192 79-162 (299)
199 PF04780 DUF629: Protein of un 29.4 45 0.00098 27.8 2.2 24 114-137 58-81 (466)
200 COG3677 Transposase and inacti 29.1 26 0.00056 23.6 0.7 35 142-181 31-65 (129)
201 PRK10220 hypothetical protein; 29.1 24 0.00053 22.8 0.5 12 169-180 20-31 (111)
202 PF13824 zf-Mss51: Zinc-finger 28.9 40 0.00086 18.9 1.3 12 56-67 12-23 (55)
203 PF08790 zf-LYAR: LYAR-type C2 28.5 13 0.00028 17.6 -0.6 18 170-188 1-18 (28)
204 KOG0717|consensus 28.5 39 0.00084 28.0 1.7 22 142-163 293-314 (508)
205 KOG4377|consensus 28.2 17 0.00036 29.5 -0.4 26 170-195 402-429 (480)
206 PRK14873 primosome assembly pr 28.1 47 0.001 29.3 2.2 27 136-178 405-431 (665)
207 cd00065 FYVE FYVE domain; Zinc 27.2 48 0.001 18.1 1.5 9 144-152 5-13 (57)
208 PF04423 Rad50_zn_hook: Rad50 27.0 25 0.00054 19.3 0.3 12 143-154 22-33 (54)
209 COG5112 UFD2 U1-like Zn-finger 25.9 27 0.00059 22.3 0.4 23 168-190 54-76 (126)
210 KOG0717|consensus 25.9 36 0.00078 28.2 1.1 22 170-191 293-314 (508)
211 KOG3507|consensus 25.6 45 0.00098 18.9 1.1 10 141-150 37-46 (62)
212 TIGR00595 priA primosomal prot 25.1 57 0.0012 27.7 2.2 47 115-177 215-261 (505)
213 TIGR03826 YvyF flagellar opero 25.0 53 0.0012 22.4 1.6 40 3-55 5-44 (137)
214 PTZ00448 hypothetical protein; 24.5 52 0.0011 26.5 1.7 24 169-192 314-337 (373)
215 COG1326 Uncharacterized archae 24.2 49 0.0011 23.9 1.4 12 86-97 30-41 (201)
216 PRK00564 hypA hydrogenase nick 24.2 34 0.00074 22.5 0.6 10 114-123 72-81 (117)
217 PF07649 C1_3: C1-like domain; 24.2 38 0.00082 15.9 0.6 10 113-122 15-24 (30)
218 PF08209 Sgf11: Sgf11 (transcr 24.0 65 0.0014 15.9 1.4 22 142-164 5-26 (33)
219 smart00731 SprT SprT homologue 23.5 22 0.00048 24.3 -0.4 32 141-179 112-143 (146)
220 PF01155 HypA: Hydrogenase exp 23.5 33 0.00071 22.4 0.4 11 114-124 71-81 (113)
221 PF10263 SprT-like: SprT-like 23.4 24 0.00051 24.3 -0.3 11 141-151 123-133 (157)
222 COG4391 Uncharacterized protei 22.5 47 0.001 19.0 0.8 15 138-152 45-59 (62)
223 PF09963 DUF2197: Uncharacteri 22.4 30 0.00064 19.5 0.0 10 84-93 29-38 (56)
224 COG1675 TFA1 Transcription ini 22.3 1.2E+02 0.0026 21.7 3.1 16 137-152 109-124 (176)
225 smart00064 FYVE Protein presen 22.2 50 0.0011 18.9 1.0 10 115-124 12-21 (68)
226 PLN03238 probable histone acet 22.0 83 0.0018 24.4 2.3 24 168-191 47-70 (290)
227 PLN02294 cytochrome c oxidase 21.8 43 0.00094 23.6 0.7 16 138-153 138-153 (174)
228 COG4640 Predicted membrane pro 21.7 69 0.0015 26.0 1.9 17 171-187 17-33 (465)
229 PRK03681 hypA hydrogenase nick 21.2 41 0.00088 22.0 0.5 10 114-123 71-80 (114)
230 PHA02998 RNA polymerase subuni 21.0 22 0.00048 25.2 -0.8 9 170-178 172-180 (195)
231 PF10013 DUF2256: Uncharacteri 21.0 65 0.0014 16.9 1.1 15 171-185 10-24 (42)
232 PF07295 DUF1451: Protein of u 20.9 28 0.00061 24.0 -0.3 28 141-178 112-139 (146)
233 PRK14892 putative transcriptio 20.6 34 0.00073 21.8 0.0 11 170-180 43-53 (99)
234 KOG4118|consensus 20.2 53 0.0011 19.0 0.8 24 142-165 39-62 (74)
235 PF04810 zf-Sec23_Sec24: Sec23 20.1 18 0.00039 18.6 -1.1 8 141-148 24-31 (40)
No 1
>KOG2462|consensus
Probab=99.97 E-value=4.3e-32 Score=195.29 Aligned_cols=134 Identities=34% Similarity=0.706 Sum_probs=126.1
Q ss_pred cccccccccccCChhHHHHHHhhcCC---CCcccCchhhhhcCCHHHHHhHHHHhCCcceecCcCccccCChhhHHHHHh
Q psy11591 58 THQCNHCGRAFSDKSNLTVHIRTHTD---EKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIK 134 (220)
Q Consensus 58 ~~~C~~C~~~~~~~~~l~~h~~~~~~---~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~ 134 (220)
.|.|++|++.+.+.++|..|.+.|-. .+.+.|..||+++.+...|+.|+++|. .+..|.+||+.|...+.|+.|+|
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIR 208 (279)
T ss_pred ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhcccc
Confidence 48999999999999999999988754 577999999999999999999999996 67899999999999999999999
Q ss_pred hhcCCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHHHHhhhc
Q psy11591 135 THTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192 (220)
Q Consensus 135 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 192 (220)
+|+|||||.|+.|+++|...++|+.|+++|.+.++|+|..|+|+|...+.|.+|.+.-
T Consensus 209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999999999998763
No 2
>KOG1074|consensus
Probab=99.97 E-value=1.7e-31 Score=216.21 Aligned_cols=141 Identities=34% Similarity=0.731 Sum_probs=130.2
Q ss_pred ccccccccccCChhHHHHHHhhcCCCCcccCchhhhhcCCHHHHHhHHHHhCC-----cceecC---cCccccCChhhHH
Q psy11591 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKFTHND-----IKFKCN---YCEKVYNNPSNLQ 130 (220)
Q Consensus 59 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~-----~~~~C~---~C~~~f~~~~~l~ 130 (220)
.+|-.|.+++.-.+.|+.|.++|+|++||+|.+||++|..+.+|+.|+..|.. .++.|+ +|-+.|.+...|.
T Consensus 606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lp 685 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLP 685 (958)
T ss_pred cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccccc
Confidence 47999999999999999999999999999999999999999999999999943 348899 9999999999999
Q ss_pred HHHhhhcC------------------------------------------------------------------------
Q psy11591 131 RHIKTHTD------------------------------------------------------------------------ 138 (220)
Q Consensus 131 ~H~~~h~~------------------------------------------------------------------------ 138 (220)
+|+++|.+
T Consensus 686 QhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~~~ 765 (958)
T KOG1074|consen 686 QHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSCGR 765 (958)
T ss_pred ceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccccc
Confidence 99999873
Q ss_pred --------------------------------------------------------------------------------
Q psy11591 139 -------------------------------------------------------------------------------- 138 (220)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (220)
T Consensus 766 ~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~~ 845 (958)
T KOG1074|consen 766 ELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLATKT 845 (958)
T ss_pred ccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccccc
Confidence
Q ss_pred -------------------------------CCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHHH
Q psy11591 139 -------------------------------NSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQ 187 (220)
Q Consensus 139 -------------------------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 187 (220)
.....|.+||+.|..++.|..|+++|++++||.|.+|++.|.....|..
T Consensus 846 n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKv 925 (958)
T KOG1074|consen 846 NEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKV 925 (958)
T ss_pred ccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhh
Confidence 1116799999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCC
Q psy11591 188 HYKSHSMFIPPE 199 (220)
Q Consensus 188 H~~~h~~~~~~~ 199 (220)
||.+|....|+.
T Consensus 926 HMgtH~w~q~~s 937 (958)
T KOG1074|consen 926 HMGTHMWVQPPS 937 (958)
T ss_pred hhccccccCCCc
Confidence 999999888775
No 3
>KOG2462|consensus
Probab=99.95 E-value=8.2e-29 Score=178.42 Aligned_cols=133 Identities=33% Similarity=0.678 Sum_probs=122.8
Q ss_pred CCcccccchhhcCChhHHHHHHhhhcC---CCCcccccccccccCChhHHHHHHhhcCCCCcccCchhhhhcCCHHHHHh
Q psy11591 28 RPHVCHVCSKSFRNRGKLNVHYKRVHE---RIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYN 104 (220)
Q Consensus 28 ~~~~C~~C~~~~~~~~~l~~H~~~~h~---~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~ 104 (220)
..|+|+.|++.+.+.+.|.+|. +.|- ..+.+.|++|++.+.+...|..|+++|. .+..|.+||+.|...+.|+.
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHk-Q~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQG 205 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHK-QTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQG 205 (279)
T ss_pred Cceeccccccccccccccchhh-cccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhc
Confidence 4489999999999999999996 5553 3567999999999999999999999986 68999999999999999999
Q ss_pred HHHHh-CCcceecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHHHH
Q psy11591 105 HKFTH-NDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDT 163 (220)
Q Consensus 105 h~~~~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 163 (220)
|+++| +++||.|+.|+++|.++++|+.|+++|.+.+.|.|+.|+|.|+..+.|.+|...
T Consensus 206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 99999 899999999999999999999999999999999999999999999999999864
No 4
>KOG3608|consensus
Probab=99.92 E-value=2.3e-25 Score=165.15 Aligned_cols=190 Identities=28% Similarity=0.554 Sum_probs=169.8
Q ss_pred CCccchhhhcCHHHHHHHHHHhhCCCCcccccchhhcCChhHHHHHHhhh-cCCCCcccccccccccCChhHHHHHHhhc
Q psy11591 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRV-HERIRTHQCNHCGRAFSDKSNLTVHIRTH 81 (220)
Q Consensus 3 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~~-h~~~~~~~C~~C~~~~~~~~~l~~h~~~~ 81 (220)
.+..|...+.++..|+.|++.|++++...|+.||..|.+...|..|.++- -....+|+|..|.+.|.+...|..|+..|
T Consensus 181 ~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH 260 (467)
T KOG3608|consen 181 NWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRH 260 (467)
T ss_pred cchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999998543 33556899999999999999999999887
Q ss_pred CCCCcccCchhhhhcCCHHHHHhHHHHh--CCcceecCcCccccCChhhHHHHHhhhcCCCceeCCc--cccccCCHHHH
Q psy11591 82 TDEKKYMCELCGAEFAQWATLYNHKFTH--NDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEI--CGKDFGTARYL 157 (220)
Q Consensus 82 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l 157 (220)
. .-|+|+.|+.+....+.|..|++.. ..+||+|..|++.+.+.+.|.+|...|. +..|.|.. |..+|.+...+
T Consensus 261 v--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~ 337 (467)
T KOG3608|consen 261 V--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQM 337 (467)
T ss_pred h--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHH
Confidence 4 4599999999999999999999876 6899999999999999999999999887 78899988 99999999999
Q ss_pred HHHHHHcC-CCC--cccccccccccCchhHHHHHhhhcccc
Q psy11591 158 KRHKDTHN-SVN--TFVCEVCNTGFKVKKHLTQHYKSHSMF 195 (220)
Q Consensus 158 ~~H~~~h~-~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~ 195 (220)
++|.+.++ |.+ +|.|-.|++.|.+..+|.+|+..-++.
T Consensus 338 ~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f 378 (467)
T KOG3608|consen 338 RRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGF 378 (467)
T ss_pred HHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcc
Confidence 99987655 654 599999999999999999998554443
No 5
>KOG3623|consensus
Probab=99.90 E-value=2.3e-24 Score=172.91 Aligned_cols=106 Identities=33% Similarity=0.652 Sum_probs=90.4
Q ss_pred CCCccchhhhcCHHHHHHHHHH-h-hCCCCcccccchhhcCChhHHHHHHhhhcCC------------CCcccccccccc
Q psy11591 2 FKCPQCGALLKNIWSLREHIMI-H-TGERPHVCHVCSKSFRNRGKLNVHYKRVHER------------IRTHQCNHCGRA 67 (220)
Q Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~-~-~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~~------------~~~~~C~~C~~~ 67 (220)
..|++|++.+.+...|..|+.. | ..+..|.|..|..+|..+..|..||..+-.+ .+.|+|.+|++.
T Consensus 211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA 290 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA 290 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence 5799999999999999999874 3 3345589999999999999999998543222 245999999999
Q ss_pred cCChhHHHHHHhhcCCCCcccCchhhhhcCCHHHHHhHHH
Q psy11591 68 FSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKF 107 (220)
Q Consensus 68 ~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~ 107 (220)
|..+-.|..|+++|.|++||.|+.|++.|.....+..|+.
T Consensus 291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred hhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence 9999999999999999999999999999998888888853
No 6
>KOG3608|consensus
Probab=99.89 E-value=1.2e-22 Score=150.80 Aligned_cols=187 Identities=26% Similarity=0.565 Sum_probs=165.7
Q ss_pred CccchhhhcCHHHHHHHHHHhhCC------------CC-ccc--ccchhhcCChhHHHHHHhhhcCCCCccccccccccc
Q psy11591 4 CPQCGALLKNIWSLREHIMIHTGE------------RP-HVC--HVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAF 68 (220)
Q Consensus 4 C~~C~~~f~~~~~l~~H~~~~~~~------------~~-~~C--~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~ 68 (220)
+..|++.|.+...+..|+..|.-- +| +.| ..|-+.+.++..|+.|. +.|++++-.-|+.|+.-|
T Consensus 139 WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~-r~Hs~eKvvACp~Cg~~F 217 (467)
T KOG3608|consen 139 WEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHI-RTHSNEKVVACPHCGELF 217 (467)
T ss_pred hhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHH-HhcCCCeEEecchHHHHh
Confidence 367999999999999998776432 12 334 45899999999999997 899999999999999999
Q ss_pred CChhHHHHHHhhcC--CCCcccCchhhhhcCCHHHHHhHHHHhCCcceecCcCccccCChhhHHHHHhh-hcCCCceeCC
Q psy11591 69 SDKSNLTVHIRTHT--DEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKT-HTDNSLYICE 145 (220)
Q Consensus 69 ~~~~~l~~h~~~~~--~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~ 145 (220)
.+...|..|++..+ ...+|.|..|.+.|..+..|..|+..|- .-|.|+.|+-.....++|..|++. |...+||+|+
T Consensus 218 ~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv-n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd 296 (467)
T KOG3608|consen 218 RTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV-NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCD 296 (467)
T ss_pred ccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh-hcccccccccCCCChHHHHHHHHhhhccCCCcccc
Confidence 99999999987654 4678999999999999999999998883 358999999999999999999995 6789999999
Q ss_pred ccccccCCHHHHHHHHHHcCCCCcccccc--cccccCchhHHHHHhhhcc
Q psy11591 146 ICGKDFGTARYLKRHKDTHNSVNTFVCEV--CNTGFKVKKHLTQHYKSHS 193 (220)
Q Consensus 146 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~ 193 (220)
.|++.+...+.|.+|...|. +-.|+|.. |.++|.++.+|++|++.++
T Consensus 297 ~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh 345 (467)
T KOG3608|consen 297 ECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH 345 (467)
T ss_pred chhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888 67899987 9999999999999987766
No 7
>KOG3623|consensus
Probab=99.85 E-value=8.2e-22 Score=158.39 Aligned_cols=77 Identities=26% Similarity=0.608 Sum_probs=70.5
Q ss_pred CCCccchhhhcCHHHHHHHHHHhhCC-------------CCcccccchhhcCChhHHHHHHhhhcCCCCccccccccccc
Q psy11591 2 FKCPQCGALLKNIWSLREHIMIHTGE-------------RPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAF 68 (220)
Q Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~~~~~-------------~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~ 68 (220)
|.|..|...|..+..|.+|+..|... +.|+|..|++.|..+-.|..|+ +.|.|++||.|+.|++.|
T Consensus 241 fsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHl-RIHSGEKPfeCpnCkKRF 319 (1007)
T KOG3623|consen 241 FSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHL-RIHSGEKPFECPNCKKRF 319 (1007)
T ss_pred CcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhh-eeecCCCCcCCccccccc
Confidence 67999999999999999999988643 4599999999999999999997 899999999999999999
Q ss_pred CChhHHHHHHh
Q psy11591 69 SDKSNLTVHIR 79 (220)
Q Consensus 69 ~~~~~l~~h~~ 79 (220)
...+++..|+.
T Consensus 320 SHSGSySSHmS 330 (1007)
T KOG3623|consen 320 SHSGSYSSHMS 330 (1007)
T ss_pred ccCCccccccc
Confidence 99988888864
No 8
>KOG1074|consensus
Probab=99.81 E-value=1e-20 Score=154.23 Aligned_cols=170 Identities=29% Similarity=0.545 Sum_probs=142.5
Q ss_pred CCCCccchhhhcCHHHHHHHHHHhhCCCCcccccchhhcCChhHHHHHHhhhcCCC----Cccccc---ccccccCChhH
Q psy11591 1 MFKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERI----RTHQCN---HCGRAFSDKSN 73 (220)
Q Consensus 1 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~~~----~~~~C~---~C~~~~~~~~~ 73 (220)
|-+|-.|-+.......|+.|.+.|++++||+|.+||+.|.++++|+.|| ..|... ..+.|+ +|.+.|.+.-.
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~-~vHka~p~~R~q~ScP~~~ic~~kftn~V~ 683 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHM-SVHKAKPPARVQFSCPSTFICQKKFTNAVT 683 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcc-cccccCccccccccCCchhhhccccccccc
Confidence 3468899999999999999999999999999999999999999999998 666543 458899 99999999999
Q ss_pred HHHHHhhcCCC-C------------cccCchhhhhcCCHHHHHhHHHHhC-Cc---------------------------
Q psy11591 74 LTVHIRTHTDE-K------------KYMCELCGAEFAQWATLYNHKFTHN-DI--------------------------- 112 (220)
Q Consensus 74 l~~h~~~~~~~-~------------~~~C~~C~~~f~~~~~l~~h~~~~~-~~--------------------------- 112 (220)
+..|++.|.+. . .-+|..|.+.|.+...+..++..+. ..
T Consensus 684 lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~ 763 (958)
T KOG1074|consen 684 LPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSC 763 (958)
T ss_pred ccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccc
Confidence 99999998732 1 1356667777755555555443330 00
Q ss_pred --------------------------------------------------------------------------------
Q psy11591 113 -------------------------------------------------------------------------------- 112 (220)
Q Consensus 113 -------------------------------------------------------------------------------- 112 (220)
T Consensus 764 ~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t 843 (958)
T KOG1074|consen 764 GRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLAT 843 (958)
T ss_pred ccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccc
Confidence
Q ss_pred -----------------------------------ceecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHH
Q psy11591 113 -----------------------------------KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYL 157 (220)
Q Consensus 113 -----------------------------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 157 (220)
...|..||+.|.+.+.|..|+++|++++||.|.+|+++|....+|
T Consensus 844 ~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnL 923 (958)
T KOG1074|consen 844 KTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNL 923 (958)
T ss_pred ccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhh
Confidence 145999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccc
Q psy11591 158 KRHKDTHNSVNTFV 171 (220)
Q Consensus 158 ~~H~~~h~~~~~~~ 171 (220)
+.|+.+|.+..++.
T Consensus 924 KvHMgtH~w~q~~s 937 (958)
T KOG1074|consen 924 KVHMGTHMWVQPPS 937 (958)
T ss_pred hhhhccccccCCCc
Confidence 99999999887653
No 9
>KOG3576|consensus
Probab=99.70 E-value=1.1e-17 Score=115.66 Aligned_cols=125 Identities=30% Similarity=0.608 Sum_probs=90.3
Q ss_pred CCCcccccchhhcCChhHHHHHHhhhcCCCCcccccccccccCChhHHHHHHhhcCCCCcccCchhhhhcCCHHHHHhHH
Q psy11591 27 ERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHK 106 (220)
Q Consensus 27 ~~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~h~ 106 (220)
...+.|..|++.|.....|..|+ ..|...+.+.|..||++|.+...|..|.++|+|.+||+|+.|+++|..+-.|..|+
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~-kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHL-KCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHh-hhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 34588999999999999999997 78888888999999999999999999999999999999999999999998888887
Q ss_pred HHhCCcceecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHHHHcCCCC
Q psy11591 107 FTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVN 168 (220)
Q Consensus 107 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 168 (220)
+.-...+. ...++ ....+.|.|..||..-.....+..|++.|+...
T Consensus 194 ~kvhgv~~-----------~yayk-----err~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 194 KKVHGVQH-----------QYAYK-----ERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHHcCchH-----------HHHHH-----HhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 53311110 00000 123344555555555555555555555555443
No 10
>KOG3576|consensus
Probab=99.70 E-value=5.9e-18 Score=116.95 Aligned_cols=115 Identities=30% Similarity=0.591 Sum_probs=102.8
Q ss_pred CCCcccCchhhhhcCCHHHHHhHHHHh-CCcceecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHH
Q psy11591 83 DEKKYMCELCGAEFAQWATLYNHKFTH-NDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHK 161 (220)
Q Consensus 83 ~~~~~~C~~C~~~f~~~~~l~~h~~~~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 161 (220)
+...|.|.+|++.|....-|..|+.-| .-+.+-|..||+.|.+.-.|.+|+++|+|-+||+|..|+++|...-.|..|.
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 345589999999999999999999998 4567899999999999999999999999999999999999999999999998
Q ss_pred HHcCC-----------CCcccccccccccCchhHHHHHhhhcccccC
Q psy11591 162 DTHNS-----------VNTFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197 (220)
Q Consensus 162 ~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 197 (220)
+..+| ++.|.|..||++-........|++.|+...|
T Consensus 194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence 76665 3569999999999999999999999886543
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.47 E-value=1.6e-13 Score=111.08 Aligned_cols=145 Identities=20% Similarity=0.411 Sum_probs=113.4
Q ss_pred cccccchhhcCChhHHHHHHhhhcCCCCcccccc--cccccCChhHHHHHHhhcCCCCcccCchhhhhcCCHHHHHhHHH
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHKF 107 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~ 107 (220)
..|+.|.... ....|..|. .+-......|+. |+..|.. ..+..| +.|+.|++.|. ...+..|+.
T Consensus 408 V~C~NC~~~i-~l~~l~lHe--~~C~r~~V~Cp~~~Cg~v~~r-~el~~H---------~~C~~Cgk~f~-~s~LekH~~ 473 (567)
T PLN03086 408 VECRNCKHYI-PSRSIALHE--AYCSRHNVVCPHDGCGIVLRV-EEAKNH---------VHCEKCGQAFQ-QGEMEKHMK 473 (567)
T ss_pred EECCCCCCcc-chhHHHHHH--hhCCCcceeCCcccccceeec-cccccC---------ccCCCCCCccc-hHHHHHHHH
Confidence 5698888854 456677885 334445677885 9888743 333333 58999999996 677899999
Q ss_pred HhCCcceecCcCccccCChhhHHHHHhhhcCCCceeCCccccccC----------CHHHHHHHHHHcCCCCccccccccc
Q psy11591 108 THNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFG----------TARYLKRHKDTHNSVNTFVCEVCNT 177 (220)
Q Consensus 108 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~~C~~C~~ 177 (220)
.+ ..++.|+ |+..+ ....|..|+..|.+++++.|++|++.+. ..+.|..|..++ |.+++.|..||+
T Consensus 474 ~~-Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk 549 (567)
T PLN03086 474 VF-HEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGR 549 (567)
T ss_pred hc-CCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCC
Confidence 87 4889999 99765 5689999999999999999999999985 246899999885 889999999999
Q ss_pred ccCchhHHHHHhhhcc
Q psy11591 178 GFKVKKHLTQHYKSHS 193 (220)
Q Consensus 178 ~f~~~~~l~~H~~~h~ 193 (220)
.+ ...+|..|+...|
T Consensus 550 ~V-rlrdm~~H~~~~h 564 (567)
T PLN03086 550 SV-MLKEMDIHQIAVH 564 (567)
T ss_pred ee-eehhHHHHHHHhh
Confidence 87 5667888876544
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.39 E-value=1.4e-12 Score=105.80 Aligned_cols=144 Identities=17% Similarity=0.438 Sum_probs=111.8
Q ss_pred CCccchhhhcCHHHHHHHHHHhhCCCCccccc--chhhcCChhHHHHHHhhhcCCCCcccccccccccCChhHHHHHHhh
Q psy11591 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHV--CSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRT 80 (220)
Q Consensus 3 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~--C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~ 80 (220)
.|+.|.+..+. ..|..|...... ....|+. |+..|. ...+.. .+.|+.|++.|. ...+..|+..
T Consensus 409 ~C~NC~~~i~l-~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~-r~el~~----------H~~C~~Cgk~f~-~s~LekH~~~ 474 (567)
T PLN03086 409 ECRNCKHYIPS-RSIALHEAYCSR-HNVVCPHDGCGIVLR-VEEAKN----------HVHCEKCGQAFQ-QGEMEKHMKV 474 (567)
T ss_pred ECCCCCCccch-hHHHHHHhhCCC-cceeCCcccccceee-cccccc----------CccCCCCCCccc-hHHHHHHHHh
Confidence 48888887544 567788865433 4467985 999873 232333 368999999996 5789999999
Q ss_pred cCCCCcccCchhhhhcCCHHHHHhHHHHh-CCcceecCcCccccC----------ChhhHHHHHhhhcCCCceeCCcccc
Q psy11591 81 HTDEKKYMCELCGAEFAQWATLYNHKFTH-NDIKFKCNYCEKVYN----------NPSNLQRHIKTHTDNSLYICEICGK 149 (220)
Q Consensus 81 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~-~~~~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~~C~~C~~ 149 (220)
++ .++.|+ ||..+ .+..|..|+..+ ..+++.|+.|++.+. ..+.|..|... .|.+++.|..||+
T Consensus 475 ~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt~~C~~Cgk 549 (567)
T PLN03086 475 FH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRTAPCDSCGR 549 (567)
T ss_pred cC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh-cCCcceEccccCC
Confidence 75 889999 99755 678999999888 789999999999985 24589999888 4999999999999
Q ss_pred ccCCHHHHHHHHHHcCC
Q psy11591 150 DFGTARYLKRHKDTHNS 166 (220)
Q Consensus 150 ~f~~~~~l~~H~~~h~~ 166 (220)
.+... .+..|+...|.
T Consensus 550 ~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 550 SVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred eeeeh-hHHHHHHHhhc
Confidence 98776 56788765543
No 13
>PHA00733 hypothetical protein
Probab=99.19 E-value=4.5e-11 Score=79.70 Aligned_cols=55 Identities=25% Similarity=0.464 Sum_probs=36.9
Q ss_pred CCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHHHHhhhccc
Q psy11591 138 DNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSM 194 (220)
Q Consensus 138 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 194 (220)
+.+||.|+.|++.|.+.+.|..|++.+ ..+|.|..|++.|.....|..|+...|+
T Consensus 70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 70 AVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 356677777777777777777776654 2356777777777777777777665554
No 14
>PHA00733 hypothetical protein
Probab=99.19 E-value=2.5e-11 Score=80.92 Aligned_cols=93 Identities=15% Similarity=0.289 Sum_probs=74.3
Q ss_pred hHHHHHHhhcCCCCcccCchhhhhcCCHHHHHhH--H----HHhCCcceecCcCccccCChhhHHHHHhhhcCCCceeCC
Q psy11591 72 SNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNH--K----FTHNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICE 145 (220)
Q Consensus 72 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~h--~----~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 145 (220)
.+|..+-..-...+++.|.+|+..|.....+..+ + ..++..||.|+.|++.|.+...|..|++.+ +.+|.|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~ 103 (128)
T PHA00733 26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCP 103 (128)
T ss_pred HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCC
Confidence 3444433333346779999999998887777666 2 233678999999999999999999999976 3579999
Q ss_pred ccccccCCHHHHHHHHHHcCC
Q psy11591 146 ICGKDFGTARYLKRHKDTHNS 166 (220)
Q Consensus 146 ~C~~~f~~~~~l~~H~~~h~~ 166 (220)
.|++.|.....|..|+...|+
T Consensus 104 ~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 104 VCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCCCccCCHHHHHHHHHHhcC
Confidence 999999999999999988775
No 15
>PHA02768 hypothetical protein; Provisional
Probab=99.04 E-value=1.2e-10 Score=64.23 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=32.2
Q ss_pred eeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHH
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLT 186 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 186 (220)
|.|+.||+.|+..+.|..|+++|+ ++|.|..|++.|...+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 677778888888888888887777 5777777877777665554
No 16
>KOG3993|consensus
Probab=99.00 E-value=2.1e-11 Score=93.51 Aligned_cols=193 Identities=17% Similarity=0.229 Sum_probs=115.6
Q ss_pred CCCccchhhhcCHHHHHHHHHHhhCCCCcccccchhhcCChhHHHHHHhhhcCCCCcccc---cccccccCChhHHHHHH
Q psy11591 2 FKCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQC---NHCGRAFSDKSNLTVHI 78 (220)
Q Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C---~~C~~~~~~~~~l~~h~ 78 (220)
|.|..|...|.+...|.+|.-.-..--.|+|++|+|+|....+|..|. +.|......-= +-=.+...+....+.--
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHR-RWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHR-RWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhh-cccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 678888888888888888865444444588999999998888888884 67743321000 00000000111111000
Q ss_pred h--hcCCCCcccCchhhhhcCCHHHHHhHHHHhCCcc------------------eecCcCccccCChhhHHHHHhhhcC
Q psy11591 79 R--THTDEKKYMCELCGAEFAQWATLYNHKFTHNDIK------------------FKCNYCEKVYNNPSNLQRHIKTHTD 138 (220)
Q Consensus 79 ~--~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~------------------~~C~~C~~~f~~~~~l~~H~~~h~~ 138 (220)
+ .-..+..|.|..|++.|....-|+.|+..|...+ +.+..++-.+...+.-..+...+.+
T Consensus 347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~ 426 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG 426 (500)
T ss_pred ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence 0 0022346999999999999999999987773211 2334444333333221112111111
Q ss_pred -CCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHHHHhhhcccc
Q psy11591 139 -NSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHSMF 195 (220)
Q Consensus 139 -~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 195 (220)
.....+++++..+.++..--.+.+.-..+..|.|.+|.-+|.+...|.+|+...|..
T Consensus 427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps 484 (500)
T KOG3993|consen 427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS 484 (500)
T ss_pred cccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence 122357788877776665545555555567799999999999999999998776543
No 17
>KOG3993|consensus
Probab=98.95 E-value=7.2e-11 Score=90.68 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=90.1
Q ss_pred cccccchhhcCChhHHHHHHhhhcCCCCcccccccccccCChhHHHHHHhhcCCCCccc---CchhhhhcCCHHHHHhHH
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYM---CELCGAEFAQWATLYNHK 106 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~---C~~C~~~f~~~~~l~~h~ 106 (220)
|.|.+|...|.+...|..|. =.-.....|.|++|++.|.-..+|..|.+.|-....-. -+.-..........+.-.
T Consensus 268 yiCqLCK~kYeD~F~LAQHr-C~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHR-CPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHhhhhHHHHhhcc-CCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 77888888888888888883 22333345888888888888888888887774432111 000000000000000000
Q ss_pred HH---hCCcceecCcCccccCChhhHHHHHhhhcCCCc-----------------eeCCccccccCCHHHHHHHHHHcCC
Q psy11591 107 FT---HNDIKFKCNYCEKVYNNPSNLQRHIKTHTDNSL-----------------YICEICGKDFGTARYLKRHKDTHNS 166 (220)
Q Consensus 107 ~~---~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-----------------~~C~~C~~~f~~~~~l~~H~~~h~~ 166 (220)
+. ....-|.|.+|++.|.+...|++|+-+|..... +.+..+...+.....--.+.-.+.+
T Consensus 347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~ 426 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG 426 (500)
T ss_pred ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence 00 012258888899999888888888777653211 1222222222211111111111111
Q ss_pred -CCcccccccccccCchhHHHHHhhhcccccCCCCC
Q psy11591 167 -VNTFVCEVCNTGFKVKKHLTQHYKSHSMFIPPEQF 201 (220)
Q Consensus 167 -~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~ 201 (220)
.....|.+++-.+.+...-.-+.+.-+.+.-|.|.
T Consensus 427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~k 462 (500)
T KOG3993|consen 427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCK 462 (500)
T ss_pred cccccCCCCCCCCcccCCCCCccccccchhhccccc
Confidence 12345677777676666655565555555555554
No 18
>PHA02768 hypothetical protein; Provisional
Probab=98.91 E-value=5.3e-10 Score=61.69 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=34.5
Q ss_pred eecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHH
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYL 157 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 157 (220)
|.|+.||+.|...++|..|+++|+ ++|+|..|++.|...+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 678888888888888888888888 578888888888876655
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.77 E-value=4e-09 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.790 Sum_probs=13.4
Q ss_pred HHHHHHHcCCCCcccccccccccC
Q psy11591 157 LKRHKDTHNSVNTFVCEVCNTGFK 180 (220)
Q Consensus 157 l~~H~~~h~~~~~~~C~~C~~~f~ 180 (220)
|.+|+++|++++||.|+.|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 455555555555555555555553
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.72 E-value=9.6e-09 Score=48.49 Aligned_cols=26 Identities=50% Similarity=1.034 Sum_probs=23.2
Q ss_pred hHHHHHhhhcCCCceeCCccccccCC
Q psy11591 128 NLQRHIKTHTDNSLYICEICGKDFGT 153 (220)
Q Consensus 128 ~l~~H~~~h~~~~~~~C~~C~~~f~~ 153 (220)
+|..|+++|++++||.|+.|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 47899999999999999999999864
No 21
>PHA00616 hypothetical protein
Probab=98.72 E-value=4.2e-09 Score=55.31 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=16.1
Q ss_pred eeCCccccccCCHHHHHHHHHHcCCCCccccc
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCE 173 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 173 (220)
|.|+.||+.|...+.|..|++.|+|++++.|+
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 44555555555555555555555555544443
No 22
>PHA00616 hypothetical protein
Probab=98.58 E-value=4.8e-08 Score=51.34 Aligned_cols=35 Identities=17% Similarity=0.468 Sum_probs=30.1
Q ss_pred CCCCccchhhhcCHHHHHHHHHHhhCCCCcccccc
Q psy11591 1 MFKCPQCGALLKNIWSLREHIMIHTGERPHVCHVC 35 (220)
Q Consensus 1 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C 35 (220)
||+|+.||+.|...+.|..|++.|++++++.|+.-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~ 35 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF 35 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence 78899999999999999999999888888887654
No 23
>PHA00732 hypothetical protein
Probab=98.47 E-value=1.3e-07 Score=57.38 Aligned_cols=44 Identities=30% Similarity=0.557 Sum_probs=22.7
Q ss_pred eecCcCccccCChhhHHHHHhh-hcCCCceeCCccccccCCHHHHHHHHHH
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKT-HTDNSLYICEICGKDFGTARYLKRHKDT 163 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 163 (220)
|.|..|++.|.+.+.|..|++. |.+ +.|+.|++.|. .+..|..+
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence 4555555555555555555553 322 35555555555 24445433
No 24
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.36 E-value=7e-07 Score=50.29 Aligned_cols=51 Identities=24% Similarity=0.516 Sum_probs=33.1
Q ss_pred ceeCCccccccCCHHHHHHHHHHcCCC--CcccccccccccCchhHHHHHhhhccc
Q psy11591 141 LYICEICGKDFGTARYLKRHKDTHNSV--NTFVCEVCNTGFKVKKHLTQHYKSHSM 194 (220)
Q Consensus 141 ~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~~~h~~ 194 (220)
.|.||+|++ ..+...|..|....|.. +.+.|++|...+. ..|..|+..+|+
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 367777877 45566777776654332 4577888877544 377778776653
No 25
>PHA00732 hypothetical protein
Probab=98.29 E-value=5.4e-07 Score=54.61 Aligned_cols=45 Identities=38% Similarity=0.727 Sum_probs=32.2
Q ss_pred ceeCCccccccCCHHHHHHHHHH-cCCCCcccccccccccCchhHHHHHhhh
Q psy11591 141 LYICEICGKDFGTARYLKRHKDT-HNSVNTFVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 141 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
||.|+.|++.|.+.+.|..|++. |. ++.|+.|+++|. .|..|..+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence 46788888888888888888774 44 247888888776 46666644
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.19 E-value=3.2e-06 Score=47.56 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=23.6
Q ss_pred cccccchhhcCChhHHHHHHhhhcCCC-CcccccccccccCChhHHHHHHhhc
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHERI-RTHQCNHCGRAFSDKSNLTVHIRTH 81 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~~-~~~~C~~C~~~~~~~~~l~~h~~~~ 81 (220)
|.|+.|++ ..+...|..|....|..+ +.+.||.|...+. ..|..|+..+
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence 45555555 334455555555555443 2355555554332 2455554443
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=98.02 E-value=2.4e-06 Score=39.03 Aligned_cols=22 Identities=50% Similarity=0.990 Sum_probs=10.6
Q ss_pred eeCCccccccCCHHHHHHHHHH
Q psy11591 142 YICEICGKDFGTARYLKRHKDT 163 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~ 163 (220)
|.|+.|++.|.+.+.|.+|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3444555555555555554443
No 28
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.97 E-value=5.9e-06 Score=37.66 Aligned_cols=22 Identities=27% Similarity=0.824 Sum_probs=13.8
Q ss_pred ccccccccccCchhHHHHHhhh
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
|.|+.|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 4566666666666666666654
No 29
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.95 E-value=4.6e-06 Score=38.37 Aligned_cols=23 Identities=39% Similarity=0.969 Sum_probs=12.2
Q ss_pred ccccccccccCchhHHHHHhhhc
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYKSH 192 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~~h 192 (220)
|.|++|++.|.+...|..|+++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 45566666666666666665554
No 30
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.92 E-value=5.1e-06 Score=39.54 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=18.3
Q ss_pred cccccccccccCchhHHHHHhhhcc
Q psy11591 169 TFVCEVCNTGFKVKKHLTQHYKSHS 193 (220)
Q Consensus 169 ~~~C~~C~~~f~~~~~l~~H~~~h~ 193 (220)
+|.|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 4677777777777777777777665
No 31
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.79 E-value=1.4e-05 Score=51.24 Aligned_cols=73 Identities=21% Similarity=0.453 Sum_probs=19.1
Q ss_pred ecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHHHHhhhc
Q psy11591 115 KCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSH 192 (220)
Q Consensus 115 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 192 (220)
.|..|+..|.+...|..|+...++-..- ....+.....+..+....- ...+.|..|++.|.+...|..|++.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccc----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 3777888888888888888665543211 1112223334444433221 22578888888888888888888765
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.77 E-value=2.7e-05 Score=35.65 Aligned_cols=23 Identities=43% Similarity=0.944 Sum_probs=13.1
Q ss_pred eeCCccccccCCHHHHHHHHHHc
Q psy11591 142 YICEICGKDFGTARYLKRHKDTH 164 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h 164 (220)
|.|++|++.|.+...|..|+.++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 45666666666666666666554
No 33
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.69 E-value=1.3e-05 Score=60.12 Aligned_cols=51 Identities=27% Similarity=0.538 Sum_probs=43.3
Q ss_pred CCceeCCc--cccccCCHHHHHHHHHHcC-------------------CCCcccccccccccCchhHHHHHh
Q psy11591 139 NSLYICEI--CGKDFGTARYLKRHKDTHN-------------------SVNTFVCEVCNTGFKVKKHLTQHY 189 (220)
Q Consensus 139 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~ 189 (220)
++||+|++ |+|.|+...+|.=|+.--| ..+||+|++|+|+|.....|.-|.
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 58999988 9999999999988875322 348999999999999999999885
No 34
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.61 E-value=4.1e-05 Score=36.33 Aligned_cols=25 Identities=36% Similarity=0.798 Sum_probs=16.2
Q ss_pred ceeCCccccccCCHHHHHHHHHHcC
Q psy11591 141 LYICEICGKDFGTARYLKRHKDTHN 165 (220)
Q Consensus 141 ~~~C~~C~~~f~~~~~l~~H~~~h~ 165 (220)
||.|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 4666666666666666666666554
No 35
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.58 E-value=5.4e-05 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=0.0
Q ss_pred cccchhhcCChhHHHHHHhhhc
Q psy11591 32 CHVCSKSFRNRGKLNVHYKRVH 53 (220)
Q Consensus 32 C~~C~~~~~~~~~l~~H~~~~h 53 (220)
|..|+..|.+...|..||...|
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H 23 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKH 23 (100)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 4444444444444444443333
No 36
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.42 E-value=0.00011 Score=39.54 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=12.8
Q ss_pred CCcccccccccccCchhHHHHHhhhcccccC
Q psy11591 167 VNTFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197 (220)
Q Consensus 167 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 197 (220)
+.|..|++|+..+.+..+|++|+++.|+.+|
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 3445555555555555555555555554443
No 37
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.33 E-value=0.00026 Score=38.13 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=20.3
Q ss_pred cCCCceeCCccccccCCHHHHHHHHHHcCCCCc
Q psy11591 137 TDNSLYICEICGKDFGTARYLKRHKDTHNSVNT 169 (220)
Q Consensus 137 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 169 (220)
..+.|-.|++|+..+.+..+|++|+.+.|+.+|
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 345677888888888888888888877777664
No 38
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=97.31 E-value=0.00011 Score=33.68 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=13.7
Q ss_pred ccccccccccCchhHHHHHhhhcc
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYKSHS 193 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~~h~ 193 (220)
|+|+.|++... ...|..|++.++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 56667776665 666777766654
No 39
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.29 E-value=0.00019 Score=33.29 Aligned_cols=23 Identities=35% Similarity=0.788 Sum_probs=13.5
Q ss_pred ccccccccccCchhHHHHHhhhc
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYKSH 192 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~~h 192 (220)
|.|..|++.|.+...|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 35566666666666666665544
No 40
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.22 E-value=0.0001 Score=55.53 Aligned_cols=53 Identities=30% Similarity=0.665 Sum_probs=42.3
Q ss_pred CCcceecCc--CccccCChhhHHHHHhhhc-------------------CCCceeCCccccccCCHHHHHHHHH
Q psy11591 110 NDIKFKCNY--CEKVYNNPSNLQRHIKTHT-------------------DNSLYICEICGKDFGTARYLKRHKD 162 (220)
Q Consensus 110 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~ 162 (220)
.++||.|++ |.+.+.+...|+-|+.--+ ..+||.|++|+|.|+...+|.=|..
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 347888976 8899998888888875322 3589999999999999999876653
No 41
>PRK04860 hypothetical protein; Provisional
Probab=97.06 E-value=0.00031 Score=48.73 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=31.9
Q ss_pred CceeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchh
Q psy11591 140 SLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKK 183 (220)
Q Consensus 140 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 183 (220)
-+|.|. |+. ....+++|.+++.++++|.|..|+..|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 368887 887 6667788999999989999999988776543
No 42
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.99 E-value=0.00034 Score=32.36 Aligned_cols=23 Identities=39% Similarity=0.940 Sum_probs=15.8
Q ss_pred ccccccccccCchhHHHHHhhhc
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYKSH 192 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~~h 192 (220)
|.|.+|+..|.+...|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 45777777777777777776553
No 43
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.94 E-value=0.0012 Score=30.48 Aligned_cols=23 Identities=39% Similarity=1.048 Sum_probs=14.7
Q ss_pred CCCccchhhhcCHHHHHHHHHHh
Q psy11591 2 FKCPQCGALLKNIWSLREHIMIH 24 (220)
Q Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~~ 24 (220)
|.|+.|++.|.....|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 45666666666666666666644
No 44
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.75 E-value=0.0012 Score=30.12 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=12.3
Q ss_pred eeCCccccccCCHHHHHHHHHHcC
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHN 165 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~ 165 (220)
|.|+.|+.... ...|.+|++.++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 45666666655 556666665543
No 45
>KOG2785|consensus
Probab=96.74 E-value=0.0072 Score=47.09 Aligned_cols=163 Identities=17% Similarity=0.286 Sum_probs=96.7
Q ss_pred CcccccchhhcCChhHHHHHHhhhcCCC----Cccccccc-ccccCChhHH-HHHH--hhcCCCCcccCchhhhhcCCHH
Q psy11591 29 PHVCHVCSKSFRNRGKLNVHYKRVHERI----RTHQCNHC-GRAFSDKSNL-TVHI--RTHTDEKKYMCELCGAEFAQWA 100 (220)
Q Consensus 29 ~~~C~~C~~~~~~~~~l~~H~~~~h~~~----~~~~C~~C-~~~~~~~~~l-~~h~--~~~~~~~~~~C~~C~~~f~~~~ 100 (220)
.|.|..|...|.+...-+.|+.+..... +...-|-- -..|...... ..-. ....++.++.|.+|.+.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 4789999999999988888886543221 11111111 1122211111 1111 1234567789999999999998
Q ss_pred HHHhHHHHhCCc------------------ceec-------------CcCccccCChhhHHHHHhh------------hc
Q psy11591 101 TLYNHKFTHNDI------------------KFKC-------------NYCEKVYNNPSNLQRHIKT------------HT 137 (220)
Q Consensus 101 ~l~~h~~~~~~~------------------~~~C-------------~~C~~~f~~~~~l~~H~~~------------h~ 137 (220)
....|+..-..+ .+.+ ..+............+... ..
T Consensus 83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~ 162 (390)
T KOG2785|consen 83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED 162 (390)
T ss_pred hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence 888886543110 0111 1111111111111111110 11
Q ss_pred CCCceeCCccccccCCHHHHHHHHHHcCCC-----------------------Ccccccccc---cccCchhHHHHHhhh
Q psy11591 138 DNSLYICEICGKDFGTARYLKRHKDTHNSV-----------------------NTFVCEVCN---TGFKVKKHLTQHYKS 191 (220)
Q Consensus 138 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~ 191 (220)
...|-.|-+|++.+++...-..|+..+||. .-+.|-.|+ +.|.+..+.+.||+.
T Consensus 163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 123568999999999999999999988863 237888898 999999999999954
No 46
>KOG1146|consensus
Probab=96.63 E-value=0.00051 Score=61.13 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=32.0
Q ss_pred cccchhhcCChhHHHHHHhhhcCCCCcccccccccccCChhHHHHHHhhcC
Q psy11591 32 CHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHT 82 (220)
Q Consensus 32 C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~~~ 82 (220)
+..++..+.....+..|+...+...+.+.|+.|+..+.....|..|++..+
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskh 489 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKH 489 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccc
Confidence 334445555555555555555555666777777777777777777776633
No 47
>PRK04860 hypothetical protein; Provisional
Probab=96.54 E-value=0.0022 Score=44.54 Aligned_cols=38 Identities=21% Similarity=0.695 Sum_probs=33.7
Q ss_pred ceecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCH
Q psy11591 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTA 154 (220)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 154 (220)
+|.|. |+. ....++.|.+++.++++|.|..|+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 69998 987 678899999999999999999999988654
No 48
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.53 E-value=0.0017 Score=29.96 Aligned_cols=22 Identities=32% Similarity=0.890 Sum_probs=13.8
Q ss_pred eeCCccccccCCHHHHHHHHHH
Q psy11591 142 YICEICGKDFGTARYLKRHKDT 163 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~ 163 (220)
|.|..|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666543
No 49
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.44 E-value=0.0014 Score=30.89 Aligned_cols=22 Identities=41% Similarity=0.868 Sum_probs=18.3
Q ss_pred ccccccccccCchhHHHHHhhh
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
|.|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6788888888888888888765
No 50
>KOG2231|consensus
Probab=95.90 E-value=0.04 Score=46.72 Aligned_cols=94 Identities=20% Similarity=0.443 Sum_probs=49.7
Q ss_pred ChhHHHHHHhhhcCCCCcccccc------cccccCChhHHHHHHhhcCC-CCc----ccCchhhhhcCCHHHHHhHHHHh
Q psy11591 41 NRGKLNVHYKRVHERIRTHQCNH------CGRAFSDKSNLTVHIRTHTD-EKK----YMCELCGAEFAQWATLYNHKFTH 109 (220)
Q Consensus 41 ~~~~l~~H~~~~h~~~~~~~C~~------C~~~~~~~~~l~~h~~~~~~-~~~----~~C~~C~~~f~~~~~l~~h~~~~ 109 (220)
+...|..|+...|..-..-.|-. +.....+...|..|++.--. +.. -.|..|...|.....+..|++.+
T Consensus 126 s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~ 205 (669)
T KOG2231|consen 126 SVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFD 205 (669)
T ss_pred HHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccc
Confidence 66777777766664433222211 12233445666666654222 111 34666777777777777776654
Q ss_pred CCcceecCcC------ccccCChhhHHHHHhhhc
Q psy11591 110 NDIKFKCNYC------EKVYNNPSNLQRHIKTHT 137 (220)
Q Consensus 110 ~~~~~~C~~C------~~~f~~~~~l~~H~~~h~ 137 (220)
. |.|..| +.-|.....|..|.+.+|
T Consensus 206 h---~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 206 H---EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred e---eheeecCcccccchhcccchHHHHHhhhcC
Confidence 3 233333 334555566776666555
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.47 E-value=0.0029 Score=29.80 Aligned_cols=21 Identities=33% Similarity=0.811 Sum_probs=13.9
Q ss_pred eeCCccccccCCHHHHHHHHH
Q psy11591 142 YICEICGKDFGTARYLKRHKD 162 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~ 162 (220)
|.|..|++.|.+...+..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 556677777777766666654
No 52
>KOG2482|consensus
Probab=95.36 E-value=0.078 Score=40.90 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=67.6
Q ss_pred cccCchhhhhcCCHHHHHhHHHHhCCcc-----------ee--cCcCccccCCh-hhHHHHHh-h------------hcC
Q psy11591 86 KYMCELCGAEFAQWATLYNHKFTHNDIK-----------FK--CNYCEKVYNNP-SNLQRHIK-T------------HTD 138 (220)
Q Consensus 86 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~-----------~~--C~~C~~~f~~~-~~l~~H~~-~------------h~~ 138 (220)
.++|--|.+.|+++..|..||+..+.+. |. -..-|++.... +.+..-.. . ..+
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~ 274 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD 274 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence 3789999999999999999998663221 10 11122222211 11100000 0 011
Q ss_pred CCc--eeCCccccccCCHHHHHHHHHHcCC---------------------------CCcccccccccccCchhHHHHHh
Q psy11591 139 NSL--YICEICGKDFGTARYLKRHKDTHNS---------------------------VNTFVCEVCNTGFKVKKHLTQHY 189 (220)
Q Consensus 139 ~~~--~~C~~C~~~f~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~ 189 (220)
..+ .+|-.|.....+...|..|+++.|. ...-.|-.|...|.....|..||
T Consensus 275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm 354 (423)
T KOG2482|consen 275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHM 354 (423)
T ss_pred CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhc
Confidence 222 5899999999999999999986542 12356889999999999999998
Q ss_pred hh
Q psy11591 190 KS 191 (220)
Q Consensus 190 ~~ 191 (220)
..
T Consensus 355 ~e 356 (423)
T KOG2482|consen 355 VE 356 (423)
T ss_pred cc
Confidence 54
No 53
>KOG2785|consensus
Probab=95.33 E-value=0.041 Score=43.03 Aligned_cols=53 Identities=19% Similarity=0.471 Sum_probs=44.7
Q ss_pred cceecCcCccccCChhhHHHHHhhhcC-----------------------CCceeCCccc---cccCCHHHHHHHHHHc
Q psy11591 112 IKFKCNYCEKVYNNPSNLQRHIKTHTD-----------------------NSLYICEICG---KDFGTARYLKRHKDTH 164 (220)
Q Consensus 112 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------------~~~~~C~~C~---~~f~~~~~l~~H~~~h 164 (220)
.|-.|..|+..+.+......||..+++ ..-+.|-.|+ +.|.+....+.|+...
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K 243 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK 243 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence 357899999999999999999998876 2337899998 9999999999999753
No 54
>KOG2893|consensus
Probab=95.10 E-value=0.0054 Score=44.59 Aligned_cols=41 Identities=24% Similarity=0.635 Sum_probs=19.4
Q ss_pred cccchhhcCChhHHHHHHhhhcCCCCcccccccccccCChhHHHHH
Q psy11591 32 CHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVH 77 (220)
Q Consensus 32 C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~~~~~~l~~h 77 (220)
|.+|++.|.+...|+.|++ .+-|+|.+|.+.+.+.-.|..|
T Consensus 13 cwycnrefddekiliqhqk-----akhfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQK-----AKHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhh-----hccceeeeehhhhccCCCceee
Confidence 4455555555555554432 2234555555554444444444
No 55
>KOG1146|consensus
Probab=94.96 E-value=0.0091 Score=53.66 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=37.8
Q ss_pred CCceeCCccccccCCHHHHHHHHHHcC-------------------------CCCcccccccccccCchhHHHHHhhh
Q psy11591 139 NSLYICEICGKDFGTARYLKRHKDTHN-------------------------SVNTFVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 139 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------------~~~~~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
.+.+.|+.|+-.|++...|-.|++..+ +.++|.|..|.+++.....|.+|+..
T Consensus 463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred cccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence 355566666666666666666655421 34689999999999999999999854
No 56
>KOG4173|consensus
Probab=94.56 E-value=0.016 Score=41.20 Aligned_cols=73 Identities=27% Similarity=0.632 Sum_probs=43.2
Q ss_pred eecCc--CccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHHHH-c---------CCCCcccc--ccccccc
Q psy11591 114 FKCNY--CEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDT-H---------NSVNTFVC--EVCNTGF 179 (220)
Q Consensus 114 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C--~~C~~~f 179 (220)
+.|++ |...|.+...+..|..+-++. .|.+|.++|.+.--|..|+.. | -|.-.|+| ..|+.+|
T Consensus 80 ~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF 156 (253)
T KOG4173|consen 80 FACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF 156 (253)
T ss_pred ccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence 45544 555666666666665544443 566666666666666666432 2 23445777 3477777
Q ss_pred CchhHHHHHh
Q psy11591 180 KVKKHLTQHY 189 (220)
Q Consensus 180 ~~~~~l~~H~ 189 (220)
.+..+-..|+
T Consensus 157 kT~r~RkdH~ 166 (253)
T KOG4173|consen 157 KTSRDRKDHM 166 (253)
T ss_pred hhhhhhhhHH
Confidence 7777777775
No 57
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.43 E-value=0.045 Score=25.20 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=8.7
Q ss_pred CCccchhhhcCHHHHHHHH
Q psy11591 3 KCPQCGALLKNIWSLREHI 21 (220)
Q Consensus 3 ~C~~C~~~f~~~~~l~~H~ 21 (220)
.|+.|++.| ....|..|+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred cCCCCCCEE-CHHHHHHHH
Confidence 455555555 334444444
No 58
>KOG2231|consensus
Probab=94.38 E-value=0.098 Score=44.47 Aligned_cols=119 Identities=28% Similarity=0.559 Sum_probs=72.4
Q ss_pred ccccccccCChhHHHHHHhhcCCCCcccCchhh---hhcC------CHHHHHhHHHHh-C-Cc----ceecCcCccccCC
Q psy11591 61 CNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCG---AEFA------QWATLYNHKFTH-N-DI----KFKCNYCEKVYNN 125 (220)
Q Consensus 61 C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~---~~f~------~~~~l~~h~~~~-~-~~----~~~C~~C~~~f~~ 125 (220)
|..| ..|.....|+.|+...|+ .+.|..|- +.|. ....|..|++.- . ++ --.|..|...|..
T Consensus 118 ~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld 194 (669)
T KOG2231|consen 118 CLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLD 194 (669)
T ss_pred Cccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhcc
Confidence 4444 344477889999865443 23444443 3333 244556665543 1 11 1468889999999
Q ss_pred hhhHHHHHhhhcCCCceeCCcc------ccccCCHHHHHHHHHHcCCCCccccc--ccc-cccCchhHHHHHhh
Q psy11591 126 PSNLQRHIKTHTDNSLYICEIC------GKDFGTARYLKRHKDTHNSVNTFVCE--VCN-TGFKVKKHLTQHYK 190 (220)
Q Consensus 126 ~~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~-~~f~~~~~l~~H~~ 190 (220)
...|..|++.++ |.|-+| +.-|..-..|..|.+.+| |.|. .|. +.|.....+..+++
T Consensus 195 ~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk 260 (669)
T KOG2231|consen 195 DDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELK 260 (669)
T ss_pred HHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehhHHHHHHH
Confidence 999999998766 455555 345677788888888776 4565 454 23444434555554
No 59
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=94.19 E-value=0.037 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=16.5
Q ss_pred cccccccccccCchhHHHHHhhh
Q psy11591 169 TFVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 169 ~~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
+|.|.+|+..|.+...+..|+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 46777777777777777777643
No 60
>KOG2482|consensus
Probab=94.05 E-value=0.19 Score=38.91 Aligned_cols=148 Identities=22% Similarity=0.339 Sum_probs=90.9
Q ss_pred HHHHHHHHh-hCCCCcccccchh-hcCChhHHHHHHhhhcCCC---------------------CcccccccccccCChh
Q psy11591 16 SLREHIMIH-TGERPHVCHVCSK-SFRNRGKLNVHYKRVHERI---------------------RTHQCNHCGRAFSDKS 72 (220)
Q Consensus 16 ~l~~H~~~~-~~~~~~~C~~C~~-~~~~~~~l~~H~~~~h~~~---------------------~~~~C~~C~~~~~~~~ 72 (220)
.|+++|+.- ......+|-.|.. ...+++.+..|+-..|.-. ..+.|-+|.+.|.++.
T Consensus 130 aLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkn 209 (423)
T KOG2482|consen 130 ALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKN 209 (423)
T ss_pred HHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcH
Confidence 345555432 2234467999965 5568888888887666321 2378999999999999
Q ss_pred HHHHHHhhcC--CCCc--------ccCc--hhhhhcCC------HHHHHhH---------HHHhCCcc--eecCcCcccc
Q psy11591 73 NLTVHIRTHT--DEKK--------YMCE--LCGAEFAQ------WATLYNH---------KFTHNDIK--FKCNYCEKVY 123 (220)
Q Consensus 73 ~l~~h~~~~~--~~~~--------~~C~--~C~~~f~~------~~~l~~h---------~~~~~~~~--~~C~~C~~~f 123 (220)
.|..||+... ...| |.-+ .-|++... ......+ ...++..+ ..|-.|....
T Consensus 210 tLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~ 289 (423)
T KOG2482|consen 210 TLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFY 289 (423)
T ss_pred HHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccch
Confidence 9999997532 1111 1110 01111100 0000000 11111222 5899999999
Q ss_pred CChhhHHHHHhhhcC---------------------------CCceeCCccccccCCHHHHHHHHHH
Q psy11591 124 NNPSNLQRHIKTHTD---------------------------NSLYICEICGKDFGTARYLKRHKDT 163 (220)
Q Consensus 124 ~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~~ 163 (220)
.+...|..|+...+. ...-.|-.|...|-....|..|+..
T Consensus 290 en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e 356 (423)
T KOG2482|consen 290 ENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE 356 (423)
T ss_pred hhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence 999999999986442 1124677888999999999999864
No 61
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=94.03 E-value=0.16 Score=33.06 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=21.0
Q ss_pred ccc----cccccccCchhHHHHHhhhccc
Q psy11591 170 FVC----EVCNTGFKVKKHLTQHYKSHSM 194 (220)
Q Consensus 170 ~~C----~~C~~~f~~~~~l~~H~~~h~~ 194 (220)
|.| ..|++.+.+...|+.|++.+||
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 788 8888888888888888887765
No 62
>KOG2893|consensus
Probab=93.94 E-value=0.014 Score=42.55 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=35.0
Q ss_pred CCccchhhhcCHHHHHHHHHHhhCCCCcccccchhhcCChhHHHHHHhhhcC
Q psy11591 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHE 54 (220)
Q Consensus 3 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~ 54 (220)
+|.+|++.|..+..|-+|+++ +.|+|.+|.+.+-+--.|..|-.+.|.
T Consensus 12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhh
Confidence 688888888888888877765 348888887776666667777655553
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.92 E-value=0.14 Score=39.59 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=13.7
Q ss_pred ccccc--chhhcCChhHHHHHHhhhc
Q psy11591 30 HVCHV--CSKSFRNRGKLNVHYKRVH 53 (220)
Q Consensus 30 ~~C~~--C~~~~~~~~~l~~H~~~~h 53 (220)
|.|+. |..++.....|..|....|
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H 177 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQH 177 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhc
Confidence 45653 5555555666666665444
No 64
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.60 E-value=0.068 Score=34.55 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=26.5
Q ss_pred CCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHHHHhhhcc
Q psy11591 144 CEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193 (220)
Q Consensus 144 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 193 (220)
|--|...|....... ...-.....|+|+.|...|-..-++-.|...|.
T Consensus 58 C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 58 CFGCQGPFPKPPVSP--FDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred ccCcCCCCCCccccc--ccccccccceeCCCCCCccccccchhhhhhccC
Confidence 666666665432110 000122345777777777777777777766654
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.44 E-value=0.2 Score=38.87 Aligned_cols=125 Identities=22% Similarity=0.489 Sum_probs=79.3
Q ss_pred ccccc--cccccCChhHHHHHHhhcCCCCcccCchhh---hhcCCH------HHHHhHHHHh-CCc----ceecCcCccc
Q psy11591 59 HQCNH--CGRAFSDKSNLTVHIRTHTDEKKYMCELCG---AEFAQW------ATLYNHKFTH-NDI----KFKCNYCEKV 122 (220)
Q Consensus 59 ~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~---~~f~~~------~~l~~h~~~~-~~~----~~~C~~C~~~ 122 (220)
|.||. |......-..|..|....++. +.|.+|- ++|+.. ..|..|...- .+. --.|..|...
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~ 229 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY 229 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence 67775 555555456788888876553 5566665 345433 3444443322 111 1368999999
Q ss_pred cCChhhHHHHHhhhcCCCceeCCccccc-------cCCHHHHHHHHHHcCCCCcccccc--cc----cccCchhHHHHHh
Q psy11591 123 YNNPSNLQRHIKTHTDNSLYICEICGKD-------FGTARYLKRHKDTHNSVNTFVCEV--CN----TGFKVKKHLTQHY 189 (220)
Q Consensus 123 f~~~~~l~~H~~~h~~~~~~~C~~C~~~-------f~~~~~l~~H~~~h~~~~~~~C~~--C~----~~f~~~~~l~~H~ 189 (220)
|.+-..|..|++..+. .|-.|++. |++...|..|.+.-| |.|.+ |- +.|.+...|+.|+
T Consensus 230 FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~ 301 (493)
T COG5236 230 FYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHL 301 (493)
T ss_pred ecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHH
Confidence 9999999999997653 45555443 667777777766433 55543 32 4688899999997
Q ss_pred hhcc
Q psy11591 190 KSHS 193 (220)
Q Consensus 190 ~~h~ 193 (220)
..-|
T Consensus 302 ~~~h 305 (493)
T COG5236 302 TRFH 305 (493)
T ss_pred HHHh
Confidence 5433
No 66
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=93.39 E-value=0.083 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=17.4
Q ss_pred ceeCCccccccCCHHHHHHHHH
Q psy11591 141 LYICEICGKDFGTARYLKRHKD 162 (220)
Q Consensus 141 ~~~C~~C~~~f~~~~~l~~H~~ 162 (220)
+|.|.+|+..|.....+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4778888888888888888865
No 67
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=93.32 E-value=0.057 Score=26.73 Aligned_cols=9 Identities=22% Similarity=0.910 Sum_probs=3.8
Q ss_pred eecCcCccc
Q psy11591 114 FKCNYCEKV 122 (220)
Q Consensus 114 ~~C~~C~~~ 122 (220)
|.|..||..
T Consensus 2 ~~C~~CGy~ 10 (33)
T cd00350 2 YVCPVCGYI 10 (33)
T ss_pred EECCCCCCE
Confidence 344444444
No 68
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.92 E-value=0.029 Score=45.56 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=58.8
Q ss_pred CceeCCccccccCCHHHHHHHHH--HcCCC--Cccccc--ccccccCchhHHHHHhhhcccccCCCCCCCCCC
Q psy11591 140 SLYICEICGKDFGTARYLKRHKD--THNSV--NTFVCE--VCNTGFKVKKHLTQHYKSHSMFIPPEQFPGLDP 206 (220)
Q Consensus 140 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~ 206 (220)
.++.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|..+|.+..+..+......
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSS 360 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCc
Confidence 36889999999999999999999 89999 999999 799999999999999999999887776555443
No 69
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.90 E-value=0.017 Score=46.91 Aligned_cols=150 Identities=25% Similarity=0.362 Sum_probs=100.5
Q ss_pred CCcccccchhhcCChhHHHHHHhh-hcCCC--Cccccc--ccccccCChhHHHHHHhhcCCCCcccCchh--hhhcCCHH
Q psy11591 28 RPHVCHVCSKSFRNRGKLNVHYKR-VHERI--RTHQCN--HCGRAFSDKSNLTVHIRTHTDEKKYMCELC--GAEFAQWA 100 (220)
Q Consensus 28 ~~~~C~~C~~~~~~~~~l~~H~~~-~h~~~--~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C--~~~f~~~~ 100 (220)
.++.|..|...|.....|..|... .|.++ +++.|+ .|++.|.....+..|...+.+..++.+..- ...+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 467888888888888888888743 78888 888898 799999888888888888888777666442 22222222
Q ss_pred HHHhHH------HHhCCcceecC--cCccccCChhhHHHHHhhhcCCC--ceeCCccccccCCHHHHHHHHHHcCCCCcc
Q psy11591 101 TLYNHK------FTHNDIKFKCN--YCEKVYNNPSNLQRHIKTHTDNS--LYICEICGKDFGTARYLKRHKDTHNSVNTF 170 (220)
Q Consensus 101 ~l~~h~------~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~ 170 (220)
....+. .......+.+. .|...+.....+..|...+...+ .+.+..|.+.+.....+..|.+.+....+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (467)
T COG5048 368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447 (467)
T ss_pred CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence 111111 11122233332 25566666667777766666555 456677899999998998988888877766
Q ss_pred ccccccc
Q psy11591 171 VCEVCNT 177 (220)
Q Consensus 171 ~C~~C~~ 177 (220)
.|..+..
T Consensus 448 ~~~~~~~ 454 (467)
T COG5048 448 LCSILKS 454 (467)
T ss_pred eeccccc
Confidence 6655443
No 70
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=92.57 E-value=0.3 Score=31.68 Aligned_cols=54 Identities=17% Similarity=0.413 Sum_probs=42.5
Q ss_pred cceecCcCccccCChhhHHHHHhhhcC------------------------------------------CCceeC----C
Q psy11591 112 IKFKCNYCEKVYNNPSNLQRHIKTHTD------------------------------------------NSLYIC----E 145 (220)
Q Consensus 112 ~~~~C~~C~~~f~~~~~l~~H~~~h~~------------------------------------------~~~~~C----~ 145 (220)
+.+.|..|+..+.. +.+..|++..+. -.-|.| .
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~ 88 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP 88 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence 45789999988765 788888884332 011899 9
Q ss_pred ccccccCCHHHHHHHHHHcCC
Q psy11591 146 ICGKDFGTARYLKRHKDTHNS 166 (220)
Q Consensus 146 ~C~~~f~~~~~l~~H~~~h~~ 166 (220)
.|+..+.+...+.+|++.+||
T Consensus 89 ~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 89 HCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCCcEeccHHHHHHHHHHhcC
Confidence 999999999999999998775
No 71
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.76 E-value=0.27 Score=31.88 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=15.2
Q ss_pred CCcccccchhhcCChhHHHHH
Q psy11591 28 RPHVCHVCSKSFRNRGKLNVH 48 (220)
Q Consensus 28 ~~~~C~~C~~~~~~~~~l~~H 48 (220)
-|..|+.|+-++.+...|.+-
T Consensus 14 LP~~CpiCgLtLVss~HLARS 34 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARS 34 (112)
T ss_pred CCCcCCcCCCEEeccchHHHh
Confidence 467788888877777777764
No 72
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.74 E-value=0.14 Score=23.83 Aligned_cols=9 Identities=33% Similarity=0.969 Sum_probs=5.3
Q ss_pred ccccccccc
Q psy11591 171 VCEVCNTGF 179 (220)
Q Consensus 171 ~C~~C~~~f 179 (220)
.|+.||+.|
T Consensus 16 ~Cp~CG~~F 24 (26)
T PF10571_consen 16 FCPHCGYDF 24 (26)
T ss_pred cCCCCCCCC
Confidence 556666655
No 73
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=90.29 E-value=0.2 Score=32.39 Aligned_cols=30 Identities=20% Similarity=0.630 Sum_probs=18.2
Q ss_pred eecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCH
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTA 154 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 154 (220)
..|+.||..|... ++.|..||+||..|.-.
T Consensus 10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence 4566677666544 23566677777666544
No 74
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=90.21 E-value=0.18 Score=27.82 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=22.0
Q ss_pred hCCCCcccccchhhcCChhHHHHHHhhhcC
Q psy11591 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVHE 54 (220)
Q Consensus 25 ~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~ 54 (220)
.++.-+.|+-|+..|........|.+..|.
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 345557788888888888888888776663
No 75
>PHA00626 hypothetical protein
Probab=89.02 E-value=0.13 Score=28.41 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=7.6
Q ss_pred CcccccccccccC
Q psy11591 168 NTFVCEVCNTGFK 180 (220)
Q Consensus 168 ~~~~C~~C~~~f~ 180 (220)
..|.|+.||+.|+
T Consensus 22 nrYkCkdCGY~ft 34 (59)
T PHA00626 22 DDYVCCDCGYNDS 34 (59)
T ss_pred cceEcCCCCCeec
Confidence 4566666666553
No 76
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=88.23 E-value=0.26 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=17.8
Q ss_pred CCCceeCCccccccCCHHHHHHHHHHcC
Q psy11591 138 DNSLYICEICGKDFGTARYLKRHKDTHN 165 (220)
Q Consensus 138 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 165 (220)
|+.-+.||.||..|.......+|....|
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 4555667777777766666666665444
No 77
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=87.71 E-value=0.32 Score=24.21 Aligned_cols=9 Identities=22% Similarity=0.855 Sum_probs=4.4
Q ss_pred eecCcCccc
Q psy11591 114 FKCNYCEKV 122 (220)
Q Consensus 114 ~~C~~C~~~ 122 (220)
|.|..||..
T Consensus 3 ~~C~~CG~i 11 (34)
T cd00729 3 WVCPVCGYI 11 (34)
T ss_pred EECCCCCCE
Confidence 445555544
No 78
>KOG4173|consensus
Probab=87.67 E-value=0.34 Score=34.75 Aligned_cols=77 Identities=23% Similarity=0.537 Sum_probs=42.7
Q ss_pred ccCch--hhhhcCCHHHHHhHHHHhCCcceecCcCccccCChhhHHHHHhhh----------cCCCceeCCc--cccccC
Q psy11591 87 YMCEL--CGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNNPSNLQRHIKTH----------TDNSLYICEI--CGKDFG 152 (220)
Q Consensus 87 ~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~~~C~~--C~~~f~ 152 (220)
+.|++ |-..|........|...... -.|..|.+.|++...|..|+... .|..-|.|-+ |+..|.
T Consensus 80 ~~cqvagc~~~~d~lD~~E~hY~~~h~--~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFk 157 (253)
T KOG4173|consen 80 FACQVAGCCQVFDALDDYEHHYHTLHG--NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFK 157 (253)
T ss_pred ccccccchHHHHhhhhhHHHhhhhccc--chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhh
Confidence 44543 44555555555554322211 14666666666666666665432 2445567744 777777
Q ss_pred CHHHHHHHHHHcC
Q psy11591 153 TARYLKRHKDTHN 165 (220)
Q Consensus 153 ~~~~l~~H~~~h~ 165 (220)
+...-..|+..-|
T Consensus 158 T~r~RkdH~I~~H 170 (253)
T KOG4173|consen 158 TSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhHHHHhc
Confidence 7777777765433
No 79
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=87.59 E-value=0.6 Score=23.70 Aligned_cols=9 Identities=22% Similarity=0.582 Sum_probs=3.7
Q ss_pred ccccccccc
Q psy11591 170 FVCEVCNTG 178 (220)
Q Consensus 170 ~~C~~C~~~ 178 (220)
.+|+.|+..
T Consensus 26 vrC~~C~~~ 34 (37)
T PF13719_consen 26 VRCPKCGHV 34 (37)
T ss_pred EECCCCCcE
Confidence 344444433
No 80
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=86.43 E-value=0.98 Score=31.65 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=6.7
Q ss_pred CCCCcccccccc
Q psy11591 165 NSVNTFVCEVCN 176 (220)
Q Consensus 165 ~~~~~~~C~~C~ 176 (220)
.|+.|-+|++||
T Consensus 145 ~ge~P~~CPiCg 156 (166)
T COG1592 145 EGEAPEVCPICG 156 (166)
T ss_pred cCCCCCcCCCCC
Confidence 345556666665
No 81
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=86.42 E-value=0.46 Score=33.24 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=19.9
Q ss_pred cceecCcCccccCChhhHHHHHhhhcCCCceeCCcccc
Q psy11591 112 IKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGK 149 (220)
Q Consensus 112 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 149 (220)
..|.|++||.. +.++.|..||.||.
T Consensus 133 ~~~vC~vCGy~-------------~~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPVCGYT-------------HEGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCCCCCc-------------ccCCCCCcCCCCCC
Confidence 36999999876 45678889999984
No 82
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=85.85 E-value=0.085 Score=36.48 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=10.7
Q ss_pred ccccccccccCchhHHH
Q psy11591 170 FVCEVCNTGFKVKKHLT 186 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~ 186 (220)
++|+.||++|.....+.
T Consensus 29 ~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 29 RECLACGKRFTTFERVE 45 (154)
T ss_pred eeccccCCcceEeEecc
Confidence 66777777766655443
No 83
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.61 E-value=0.35 Score=32.17 Aligned_cols=58 Identities=26% Similarity=0.505 Sum_probs=29.8
Q ss_pred CCCCcccCchhhhhcCCHHHHHhHHHHhCCcceecCcCccccCC--hhhHHHHHhhhcCCCceeCCccccccCCHH
Q psy11591 82 TDEKKYMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKVYNN--PSNLQRHIKTHTDNSLYICEICGKDFGTAR 155 (220)
Q Consensus 82 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~~~f~~--~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 155 (220)
.+.+.|+|++|..+..++.-|+ |=.| ||+..-+ ...|.+|...+. .||+|..+|++++
T Consensus 76 ~d~~lYeCnIC~etS~ee~FLK---------PneC--CgY~iCn~Cya~LWK~~~~yp-----vCPvCkTSFKss~ 135 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERFLK---------PNEC--CGYSICNACYANLWKFCNLYP-----VCPVCKTSFKSSS 135 (140)
T ss_pred cCCCceeccCcccccchhhcCC---------cccc--cchHHHHHHHHHHHHHcccCC-----CCCcccccccccc
Confidence 3446677777776665553221 2233 4433222 234555544332 6777777777654
No 84
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.48 E-value=0.15 Score=37.55 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=9.4
Q ss_pred ccccccccccCch
Q psy11591 170 FVCEVCNTGFKVK 182 (220)
Q Consensus 170 ~~C~~C~~~f~~~ 182 (220)
..|+.||++|...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 5689999876643
No 85
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=85.18 E-value=0.8 Score=23.25 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=4.7
Q ss_pred eCCccccccC
Q psy11591 143 ICEICGKDFG 152 (220)
Q Consensus 143 ~C~~C~~~f~ 152 (220)
.|+.|+..|.
T Consensus 4 ~CP~C~~~~~ 13 (38)
T TIGR02098 4 QCPNCKTSFR 13 (38)
T ss_pred ECCCCCCEEE
Confidence 4444544443
No 86
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=84.52 E-value=1.2 Score=22.44 Aligned_cols=12 Identities=17% Similarity=0.600 Sum_probs=5.1
Q ss_pred eCCccccccCCH
Q psy11591 143 ICEICGKDFGTA 154 (220)
Q Consensus 143 ~C~~C~~~f~~~ 154 (220)
.|+.|+..|.-.
T Consensus 4 ~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 4 TCPNCQAKYEID 15 (36)
T ss_pred ECCCCCCEEeCC
Confidence 344444444433
No 87
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=83.26 E-value=1.1 Score=23.82 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=4.9
Q ss_pred eecCcCcccc
Q psy11591 114 FKCNYCEKVY 123 (220)
Q Consensus 114 ~~C~~C~~~f 123 (220)
|.|..||..|
T Consensus 3 Y~C~~Cg~~~ 12 (44)
T smart00659 3 YICGECGREN 12 (44)
T ss_pred EECCCCCCEe
Confidence 4455555444
No 88
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=82.76 E-value=0.93 Score=29.99 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=19.0
Q ss_pred eecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCH
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTA 154 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 154 (220)
..|+.||+.|... ++.|..|++||..|...
T Consensus 10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDL-----------NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCcccccc-----------CCCCccCCCcCCccCcc
Confidence 4677777776543 33566777777776554
No 89
>KOG2186|consensus
Probab=82.08 E-value=1 Score=33.48 Aligned_cols=46 Identities=28% Similarity=0.719 Sum_probs=30.0
Q ss_pred eecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHHH
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKD 162 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 162 (220)
|.|..||....-+ .+.+|+...++ .-|.|-.|++.|-. .....|..
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 5677777776544 45557766666 45777778877776 44556654
No 90
>KOG2186|consensus
Probab=81.71 E-value=1.4 Score=32.89 Aligned_cols=45 Identities=24% Similarity=0.622 Sum_probs=30.3
Q ss_pred ccccccccccCChhHHHHHHhhcCCCCcccCchhhhhcCCHHHHHhHH
Q psy11591 59 HQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWATLYNHK 106 (220)
Q Consensus 59 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~h~ 106 (220)
|.|..||...... .+..|+...++ .-|.|.-|+++|.. .....|.
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~ 48 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHT 48 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhh
Confidence 6777777776644 45557776666 56777778877777 4555654
No 91
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=81.15 E-value=2.2 Score=29.78 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=22.2
Q ss_pred hcCCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccc
Q psy11591 136 HTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178 (220)
Q Consensus 136 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 178 (220)
.....-|.|+.|+..|+....+. .-|.|+.||..
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM 137 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence 34455677777777777766663 24777777753
No 92
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=80.83 E-value=0.81 Score=25.77 Aligned_cols=11 Identities=18% Similarity=0.618 Sum_probs=6.2
Q ss_pred CcceecCcCcc
Q psy11591 111 DIKFKCNYCEK 121 (220)
Q Consensus 111 ~~~~~C~~C~~ 121 (220)
..+|.|+.||+
T Consensus 48 g~~Y~Cp~CGF 58 (61)
T COG2888 48 GNPYRCPKCGF 58 (61)
T ss_pred CCceECCCcCc
Confidence 44566666654
No 93
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.69 E-value=0.36 Score=35.54 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=24.2
Q ss_pred CCcccccchhhcCChhHHHHHHhhh---------cCCCCc-----ccccccccccCCh
Q psy11591 28 RPHVCHVCSKSFRNRGKLNVHYKRV---------HERIRT-----HQCNHCGRAFSDK 71 (220)
Q Consensus 28 ~~~~C~~C~~~~~~~~~l~~H~~~~---------h~~~~~-----~~C~~C~~~~~~~ 71 (220)
+.+.||.|+..|..........+.. ..+..| +.||.||.++...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4567888887777664433332111 122222 5788888776543
No 94
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=78.21 E-value=2.2 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=19.3
Q ss_pred CCCcccccchhhcCChhHHHHHHhhhcCCCCccccccccccc
Q psy11591 27 ERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAF 68 (220)
Q Consensus 27 ~~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~ 68 (220)
..-|.|+.|+..|.....+..- .. ...|.|+.||..+
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~~----d~-~~~f~Cp~Cg~~l 133 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQLL----DM-DGTFTCPRCGEEL 133 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHhc----CC-CCcEECCCCCCEE
Confidence 3446777777666644332220 11 2237777777654
No 95
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=78.05 E-value=1.8 Score=23.06 Aligned_cols=7 Identities=43% Similarity=1.184 Sum_probs=3.1
Q ss_pred eeCCccc
Q psy11591 142 YICEICG 148 (220)
Q Consensus 142 ~~C~~C~ 148 (220)
..|+.||
T Consensus 22 ~~Cp~CG 28 (46)
T PRK00398 22 VRCPYCG 28 (46)
T ss_pred eECCCCC
Confidence 3444444
No 96
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=77.94 E-value=2.3 Score=29.66 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=15.6
Q ss_pred CCcccccchhhcCChhHHHHHHhhhcCCCCcccccccccc
Q psy11591 28 RPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRA 67 (220)
Q Consensus 28 ~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~ 67 (220)
.-|.|+.|+..|+...++. ..|.|+.||..
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~----------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME----------LNFTCPRCGAM 137 (158)
T ss_pred CeEECCCCCcEeeHHHHHH----------cCCcCCCCCCE
Confidence 3455666665555444432 13566666654
No 97
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=77.73 E-value=0.29 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.602 Sum_probs=16.0
Q ss_pred cccccchhhcCChhHHHHHHhhhcCCCCccccccccc
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGR 66 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~ 66 (220)
|.|..|+..|.....+. . .....|+.|+.
T Consensus 6 y~C~~Cg~~fe~~~~~~-------~-~~~~~CP~Cg~ 34 (52)
T TIGR02605 6 YRCTACGHRFEVLQKMS-------D-DPLATCPECGG 34 (52)
T ss_pred EEeCCCCCEeEEEEecC-------C-CCCCCCCCCCC
Confidence 66777777666443211 1 23456777775
No 98
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=77.52 E-value=0.83 Score=34.10 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=22.4
Q ss_pred CCCcccccccccccCchhHHHHHhhhccc
Q psy11591 166 SVNTFVCEVCNTGFKVKKHLTQHYKSHSM 194 (220)
Q Consensus 166 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 194 (220)
..+++.|+.|++....-..|.+-.++|.=
T Consensus 206 k~k~~PCPKCg~et~eTkdLSmStR~hky 234 (314)
T PF06524_consen 206 KGKPIPCPKCGYETQETKDLSMSTRSHKY 234 (314)
T ss_pred cCCCCCCCCCCCcccccccceeeeecchh
Confidence 44788999999988888888777777643
No 99
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=76.88 E-value=4.1 Score=28.05 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=8.8
Q ss_pred CCceeCCccccccCCH
Q psy11591 139 NSLYICEICGKDFGTA 154 (220)
Q Consensus 139 ~~~~~C~~C~~~f~~~ 154 (220)
..-|.|+.|+..|...
T Consensus 97 ~~~Y~Cp~C~~~y~~~ 112 (147)
T smart00531 97 NAYYKCPNCQSKYTFL 112 (147)
T ss_pred CcEEECcCCCCEeeHH
Confidence 3445666666555543
No 100
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=76.84 E-value=2.8 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.568 Sum_probs=20.7
Q ss_pred CCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccc
Q psy11591 138 DNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178 (220)
Q Consensus 138 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 178 (220)
...-|.|+.|+..|+....+. .-|.|+.||..
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~ 145 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEM 145 (178)
T ss_pred CCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCC
Confidence 445577777777777666542 24777777753
No 101
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=76.51 E-value=1 Score=32.11 Aligned_cols=40 Identities=15% Similarity=0.420 Sum_probs=28.0
Q ss_pred HHHhhCCCCcccccchhhcCChhHHHHHHhhhcCCCCcccccccccccCC
Q psy11591 21 IMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSD 70 (220)
Q Consensus 21 ~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~~~ 70 (220)
+..-....-|.|+.|+..|+...++. ..|.|+.||..+..
T Consensus 109 l~~e~~~~~Y~Cp~C~~rytf~eA~~----------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 109 LEEEENNMFFFCPNCHIRFTFDEAME----------YGFRCPQCGEMLEE 148 (178)
T ss_pred hhhccCCCEEECCCCCcEEeHHHHhh----------cCCcCCCCCCCCee
Confidence 33333445689999998887776542 26999999987553
No 102
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=76.32 E-value=0.82 Score=35.04 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=32.1
Q ss_pred eCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchhHHHHHhhhcc
Q psy11591 143 ICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKKHLTQHYKSHS 193 (220)
Q Consensus 143 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 193 (220)
.|-.|...|.....-.. ..-+....|+|+.|...|-...+.-.|...|.
T Consensus 364 ~Cf~CQ~~fp~~~~~~~--~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 364 HCFVCQGPFPKPPVSPF--DESTSSGRYQCELCKSTFCSDCDVFIHETLHF 412 (421)
T ss_pred cceeccCCCCCCCCCcc--cccccccceechhhhhhhhhhhHHHHHHHHhh
Confidence 36667666654432111 11223457999999999999999999987764
No 103
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=76.31 E-value=3.4 Score=21.70 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=8.8
Q ss_pred CceeCCccccccCCH----HHHHHHH
Q psy11591 140 SLYICEICGKDFGTA----RYLKRHK 161 (220)
Q Consensus 140 ~~~~C~~C~~~f~~~----~~l~~H~ 161 (220)
....|.+|++.+... +.|.+|+
T Consensus 15 ~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 15 KKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp S-EEETTTTEE-----SSTHHHHHHH
T ss_pred CeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 334555555554442 4555555
No 104
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=76.22 E-value=0.32 Score=25.14 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=16.2
Q ss_pred cccccchhhcCChhHHHHHHhhhcCCCCccccccccc
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGR 66 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~ 66 (220)
|.|..||..|....... ......|+.|+.
T Consensus 6 y~C~~Cg~~fe~~~~~~--------~~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKIS--------DDPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecC--------CCCCCCCCCCCC
Confidence 66777777665443211 123456777765
No 105
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=74.68 E-value=3.5 Score=19.01 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=10.2
Q ss_pred eCCccccccCCHHHHHHHHH
Q psy11591 143 ICEICGKDFGTARYLKRHKD 162 (220)
Q Consensus 143 ~C~~C~~~f~~~~~l~~H~~ 162 (220)
.||.|++.+ ....+..|..
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 456666655 3445555544
No 106
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=74.45 E-value=0.9 Score=23.79 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=15.0
Q ss_pred cccccchhhcCChhHHHHHHhhhcCCCCccccccccc
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGR 66 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~ 66 (220)
|.|..||..|.....+. . .....|+.|+.
T Consensus 6 y~C~~Cg~~fe~~~~~~-------~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSIS-------E-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEcC-------C-CCCCcCCCCCC
Confidence 56666666665443211 1 23456666665
No 107
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=73.21 E-value=2 Score=22.91 Aligned_cols=11 Identities=18% Similarity=0.788 Sum_probs=6.3
Q ss_pred CCccccccccc
Q psy11591 167 VNTFVCEVCNT 177 (220)
Q Consensus 167 ~~~~~C~~C~~ 177 (220)
...|+|..|++
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 45566666654
No 108
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=72.59 E-value=0.62 Score=27.67 Aligned_cols=42 Identities=12% Similarity=0.306 Sum_probs=24.8
Q ss_pred eeCCccccccCCHHHHHHHHHHcCCCCccccc--ccccccCchhHH
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCE--VCNTGFKVKKHL 185 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l 185 (220)
+.|+.||.......+-... ....+.-++|. .||.+|.....+
T Consensus 2 m~CP~Cg~~a~irtSr~~s--~~~~~~Y~qC~N~eCg~tF~t~es~ 45 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYIT--DTTKERYHQCQNVNCSATFITYESV 45 (72)
T ss_pred ccCCCCCCccEEEEChhcC--hhhheeeeecCCCCCCCEEEEEEEE
Confidence 4688888765322221111 12445668897 899998776544
No 109
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=72.54 E-value=3.5 Score=22.42 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=12.3
Q ss_pred eeCCccccccCCH-----HHHHHHHH
Q psy11591 142 YICEICGKDFGTA-----RYLKRHKD 162 (220)
Q Consensus 142 ~~C~~C~~~f~~~-----~~l~~H~~ 162 (220)
-.|..|++.++.. +.|.+|+.
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence 4566666665443 46666665
No 110
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=71.71 E-value=1.7 Score=29.21 Aligned_cols=22 Identities=55% Similarity=0.907 Sum_probs=9.1
Q ss_pred eeCCccccccCCHHHHHHHHHHcCC
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHNS 166 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~~ 166 (220)
..|-+||+.|... .+|+..|+|
T Consensus 73 i~clecGk~~k~L---krHL~~~~g 94 (132)
T PF05443_consen 73 IICLECGKKFKTL---KRHLRTHHG 94 (132)
T ss_dssp EE-TBT--EESBH---HHHHHHTT-
T ss_pred eEEccCCcccchH---HHHHHHccC
Confidence 4455555555533 455555544
No 111
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=70.77 E-value=1.3 Score=21.28 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=4.4
Q ss_pred ccccccccc
Q psy11591 169 TFVCEVCNT 177 (220)
Q Consensus 169 ~~~C~~C~~ 177 (220)
.|.|+.|+.
T Consensus 19 ~~vCp~C~~ 27 (30)
T PF08274_consen 19 LLVCPECGH 27 (30)
T ss_dssp SEEETTTTE
T ss_pred EEeCCcccc
Confidence 355555543
No 112
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=70.23 E-value=2.8 Score=23.63 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=10.6
Q ss_pred hhhHHHHHhhhcCCCceeCCc
Q psy11591 126 PSNLQRHIKTHTDNSLYICEI 146 (220)
Q Consensus 126 ~~~l~~H~~~h~~~~~~~C~~ 146 (220)
...|..|+...-..++..|++
T Consensus 23 r~~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 23 RKELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp CCCHHHHHHTTSTTSEEE-SS
T ss_pred HHHHHHHHHccCCCCcEECCC
Confidence 335555555444555555555
No 113
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=68.48 E-value=2.4 Score=23.99 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=5.6
Q ss_pred cceecCcCcc
Q psy11591 112 IKFKCNYCEK 121 (220)
Q Consensus 112 ~~~~C~~C~~ 121 (220)
.+|.|+.||+
T Consensus 47 ~~Y~CP~CGF 56 (59)
T PRK14890 47 NPYTCPKCGF 56 (59)
T ss_pred CceECCCCCC
Confidence 4556666654
No 114
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=68.14 E-value=3.1 Score=22.60 Aligned_cols=10 Identities=40% Similarity=1.278 Sum_probs=4.7
Q ss_pred eeCCcccccc
Q psy11591 142 YICEICGKDF 151 (220)
Q Consensus 142 ~~C~~C~~~f 151 (220)
|.|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 4444444444
No 115
>KOG4124|consensus
Probab=67.92 E-value=0.59 Score=36.39 Aligned_cols=68 Identities=24% Similarity=0.399 Sum_probs=46.3
Q ss_pred CCceeCCc--cccccCCHHHHHHHHHHcC-------------------CCCcccccccccccCchhHHHHHhhhcccccC
Q psy11591 139 NSLYICEI--CGKDFGTARYLKRHKDTHN-------------------SVNTFVCEVCNTGFKVKKHLTQHYKSHSMFIP 197 (220)
Q Consensus 139 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 197 (220)
.++|+|++ |++.++...+|..|...-| ..|+|+|++|.+++.....|.-|...-+.+..
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~~~~~~~s 426 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRTHSHLQVS 426 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceeehhhhhhh
Confidence 56788865 9999888888877754322 24789999999998887777766555444444
Q ss_pred CCCCCCCCC
Q psy11591 198 PEQFPGLDP 206 (220)
Q Consensus 198 ~~~~~~~~~ 206 (220)
|-.+..++|
T Consensus 427 ~~~~~~~~~ 435 (442)
T KOG4124|consen 427 MAQAQREVQ 435 (442)
T ss_pred hhhhhhhcc
Confidence 444444443
No 116
>KOG2807|consensus
Probab=66.93 E-value=4.7 Score=31.35 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=21.6
Q ss_pred CcccccccccccCchhHHHHHhhhcc
Q psy11591 168 NTFVCEVCNTGFKVKKHLTQHYKSHS 193 (220)
Q Consensus 168 ~~~~C~~C~~~f~~~~~l~~H~~~h~ 193 (220)
..|+|..|...|-...+.-.|-..|.
T Consensus 344 ~~y~C~~Ck~~FCldCDv~iHesLh~ 369 (378)
T KOG2807|consen 344 GRYRCESCKNVFCLDCDVFIHESLHN 369 (378)
T ss_pred CcEEchhccceeeccchHHHHhhhhc
Confidence 45999999999988888888877764
No 117
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=64.68 E-value=5.5 Score=26.86 Aligned_cols=25 Identities=28% Similarity=0.576 Sum_probs=11.3
Q ss_pred eecCcCccccCChhhHHHHHhhhcCCCc
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSL 141 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 141 (220)
..|-+||+.|... .+|++.|+|-.|
T Consensus 73 i~clecGk~~k~L---krHL~~~~gltp 97 (132)
T PF05443_consen 73 IICLECGKKFKTL---KRHLRTHHGLTP 97 (132)
T ss_dssp EE-TBT--EESBH---HHHHHHTT-S-H
T ss_pred eEEccCCcccchH---HHHHHHccCCCH
Confidence 5566666665432 666666655443
No 118
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=63.45 E-value=3.3 Score=30.41 Aligned_cols=28 Identities=25% Similarity=0.721 Sum_probs=14.9
Q ss_pred ceecCcCccccCChhhHHHHHhhhcCCC
Q psy11591 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNS 140 (220)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 140 (220)
.|.|+.|++.|....-+++|+...|.++
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred EECCCCCCcccCChHHHHHHHhhcCHHH
Confidence 4666666666666666666666555543
No 119
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=62.48 E-value=3.2 Score=30.49 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=20.4
Q ss_pred cCCCceeCCccccccCCHHHHHHHHHHcCCC
Q psy11591 137 TDNSLYICEICGKDFGTARYLKRHKDTHNSV 167 (220)
Q Consensus 137 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 167 (220)
..+..|.|+.|+|.|.-...+++|+...|.+
T Consensus 73 ~~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred HcCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 3455688888888888888888887765543
No 120
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.75 E-value=5.3 Score=25.66 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=20.6
Q ss_pred eecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCH
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTA 154 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 154 (220)
..|+.|++.|... +..|..|++||++|..+
T Consensus 10 ridPetg~KFYDL-----------NrdPiVsPytG~s~P~s 39 (129)
T COG4530 10 RIDPETGKKFYDL-----------NRDPIVSPYTGKSYPRS 39 (129)
T ss_pred ccCccccchhhcc-----------CCCccccCcccccchHH
Confidence 3577777777543 34678888888888433
No 121
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=61.51 E-value=1.6 Score=22.02 Aligned_cols=30 Identities=17% Similarity=0.503 Sum_probs=15.0
Q ss_pred eeCCccccccCCHHHHHHHHHHcCCCCccccccc
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVC 175 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C 175 (220)
..||.|+.. ..+.+|-....|...|.|..|
T Consensus 6 v~CP~C~s~----~~v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 6 VHCPRCQST----EGVKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred eeCCCCCCC----CcceeCCCCCCCCEeEecCcC
Confidence 356666543 113344444455556666655
No 122
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=61.27 E-value=3.8 Score=27.40 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=6.4
Q ss_pred ccCchhhhhcCCH
Q psy11591 87 YMCELCGAEFAQW 99 (220)
Q Consensus 87 ~~C~~C~~~f~~~ 99 (220)
.+|..||+.|.+.
T Consensus 2 H~Ct~Cg~~f~dg 14 (131)
T PF09845_consen 2 HQCTKCGRVFEDG 14 (131)
T ss_pred cccCcCCCCcCCC
Confidence 3455555555543
No 123
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=60.47 E-value=6.1 Score=24.30 Aligned_cols=11 Identities=36% Similarity=1.204 Sum_probs=5.5
Q ss_pred ceeCCcccccc
Q psy11591 141 LYICEICGKDF 151 (220)
Q Consensus 141 ~~~C~~C~~~f 151 (220)
.+.|..||..|
T Consensus 53 IW~C~kCg~~f 63 (89)
T COG1997 53 IWKCRKCGAKF 63 (89)
T ss_pred eEEcCCCCCee
Confidence 34555555444
No 124
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=60.30 E-value=3.5 Score=20.18 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=3.4
Q ss_pred eeCCcccc
Q psy11591 142 YICEICGK 149 (220)
Q Consensus 142 ~~C~~C~~ 149 (220)
..|+.||.
T Consensus 18 irC~~CG~ 25 (32)
T PF03604_consen 18 IRCPECGH 25 (32)
T ss_dssp SSBSSSS-
T ss_pred EECCcCCC
Confidence 44555543
No 125
>PRK04023 DNA polymerase II large subunit; Validated
Probab=59.02 E-value=8.8 Score=34.86 Aligned_cols=8 Identities=38% Similarity=0.779 Sum_probs=4.8
Q ss_pred cccccccc
Q psy11591 170 FVCEVCNT 177 (220)
Q Consensus 170 ~~C~~C~~ 177 (220)
+.|+.|+.
T Consensus 664 y~CPKCG~ 671 (1121)
T PRK04023 664 DECEKCGR 671 (1121)
T ss_pred CcCCCCCC
Confidence 55666664
No 126
>KOG2593|consensus
Probab=58.43 E-value=11 Score=30.76 Aligned_cols=40 Identities=23% Similarity=0.528 Sum_probs=27.1
Q ss_pred hCCCCcccccchhhcCChhHHHHHHhhhcCCCCccccccccccc
Q psy11591 25 TGERPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAF 68 (220)
Q Consensus 25 ~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~ 68 (220)
+....|.|+.|+++|.....+..- . ...-.|.|..|+..+
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L~--~--~~~~~F~C~~C~gel 163 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQLL--D--NETGEFHCENCGGEL 163 (436)
T ss_pred cccccccCCccccchhhhHHHHhh--c--ccCceEEEecCCCch
Confidence 445669999999998887776643 1 222358888888643
No 127
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=58.33 E-value=3.5 Score=18.71 Aligned_cols=7 Identities=71% Similarity=2.105 Sum_probs=4.1
Q ss_pred CCCccch
Q psy11591 2 FKCPQCG 8 (220)
Q Consensus 2 ~~C~~C~ 8 (220)
|.||.||
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 5566665
No 128
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=58.10 E-value=4.4 Score=22.16 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=7.6
Q ss_pred Cccccccccccc
Q psy11591 168 NTFVCEVCNTGF 179 (220)
Q Consensus 168 ~~~~C~~C~~~f 179 (220)
..+.|..|++++
T Consensus 36 ~r~~C~~Cgyt~ 47 (50)
T PRK00432 36 DRWHCGKCGYTE 47 (50)
T ss_pred CcEECCCcCCEE
Confidence 456777777654
No 129
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=57.18 E-value=4.1 Score=22.04 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=6.9
Q ss_pred cccccccccc
Q psy11591 169 TFVCEVCNTG 178 (220)
Q Consensus 169 ~~~C~~C~~~ 178 (220)
++.|..||++
T Consensus 37 R~~CGkCgyT 46 (51)
T COG1998 37 RWACGKCGYT 46 (51)
T ss_pred eeEeccccce
Confidence 5677777765
No 130
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=55.01 E-value=5.1 Score=20.72 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=10.1
Q ss_pred cccccccccccCChhHHH
Q psy11591 58 THQCNHCGRAFSDKSNLT 75 (220)
Q Consensus 58 ~~~C~~C~~~~~~~~~l~ 75 (220)
...|+.|+..+.+...+.
T Consensus 19 id~C~~C~G~W~d~~el~ 36 (41)
T PF13453_consen 19 IDVCPSCGGIWFDAGELE 36 (41)
T ss_pred EEECCCCCeEEccHHHHH
Confidence 345666666665555544
No 131
>KOG3408|consensus
Probab=54.16 E-value=9 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=19.8
Q ss_pred CCCCcccccchhhcCChhHHHHHHh
Q psy11591 26 GERPHVCHVCSKSFRNRGKLNVHYK 50 (220)
Q Consensus 26 ~~~~~~C~~C~~~~~~~~~l~~H~~ 50 (220)
|...|.|-.|.+-|.+...|..|.+
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~k 78 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFK 78 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHh
Confidence 3455788889888888888888874
No 132
>PF12907 zf-met2: Zinc-binding
Probab=53.26 E-value=12 Score=19.35 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=4.4
Q ss_pred HHHHHHhhhcC
Q psy11591 44 KLNVHYKRVHE 54 (220)
Q Consensus 44 ~l~~H~~~~h~ 54 (220)
.|..|...-|+
T Consensus 19 ~L~eH~enKHp 29 (40)
T PF12907_consen 19 QLKEHAENKHP 29 (40)
T ss_pred HHHHHHHccCC
Confidence 34444433333
No 133
>PF14353 CpXC: CpXC protein
Probab=52.82 E-value=13 Score=24.85 Aligned_cols=10 Identities=50% Similarity=1.414 Sum_probs=5.3
Q ss_pred cccccccccC
Q psy11591 60 QCNHCGRAFS 69 (220)
Q Consensus 60 ~C~~C~~~~~ 69 (220)
+||.|+..|.
T Consensus 3 tCP~C~~~~~ 12 (128)
T PF14353_consen 3 TCPHCGHEFE 12 (128)
T ss_pred CCCCCCCeeE
Confidence 4555555443
No 134
>KOG2593|consensus
Probab=52.76 E-value=14 Score=30.14 Aligned_cols=35 Identities=29% Similarity=0.688 Sum_probs=17.8
Q ss_pred ceecCcCccccCChhhHHHHHhhhcCCCceeCCccccc
Q psy11591 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKD 150 (220)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 150 (220)
-|.|+.|.+.|.+...++.- -...-.|.|..|+-.
T Consensus 128 ~Y~Cp~C~kkyt~Lea~~L~---~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 128 GYVCPNCQKKYTSLEALQLL---DNETGEFHCENCGGE 162 (436)
T ss_pred cccCCccccchhhhHHHHhh---cccCceEEEecCCCc
Confidence 36666666666655444322 112234666666543
No 135
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=52.55 E-value=2.3 Score=26.82 Aligned_cols=13 Identities=23% Similarity=0.746 Sum_probs=7.2
Q ss_pred CCceeCCcccccc
Q psy11591 139 NSLYICEICGKDF 151 (220)
Q Consensus 139 ~~~~~C~~C~~~f 151 (220)
++.|.|+.||..-
T Consensus 20 ~k~FtCp~Cghe~ 32 (104)
T COG4888 20 PKTFTCPRCGHEK 32 (104)
T ss_pred CceEecCccCCee
Confidence 3446666666543
No 136
>PF15269 zf-C2H2_7: Zinc-finger
Probab=52.25 E-value=10 Score=20.00 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=16.8
Q ss_pred ccccccccccCchhHHHHHhh
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYK 190 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~ 190 (220)
|+|=.|..+...++.|-.||+
T Consensus 21 ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred ceeecCCcccchHHHHHHHHH
Confidence 778888888888888888875
No 137
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=51.97 E-value=7.4 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=22.5
Q ss_pred CCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccc
Q psy11591 138 DNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178 (220)
Q Consensus 138 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 178 (220)
..-+|.|. |+..|.+. ++|-..-.|+ .|.|..|+-.
T Consensus 114 ~~~~Y~C~-C~q~~l~~---RRhn~~~~g~-~YrC~~C~gk 149 (156)
T COG3091 114 TTYPYRCQ-CQQHYLRI---RRHNTVRRGE-VYRCGKCGGK 149 (156)
T ss_pred cceeEEee-cCCccchh---hhcccccccc-eEEeccCCce
Confidence 34467887 87775543 4555555555 6888888743
No 138
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=51.84 E-value=14 Score=19.11 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=14.5
Q ss_pred CCccchhhhcCH--HHHHHHHHHhh
Q psy11591 3 KCPQCGALLKNI--WSLREHIMIHT 25 (220)
Q Consensus 3 ~C~~C~~~f~~~--~~l~~H~~~~~ 25 (220)
.|+.|++.|... .+-..|.+.|.
T Consensus 15 ~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 15 TCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHh
Confidence 588888765543 45666766654
No 139
>KOG3408|consensus
Probab=51.63 E-value=8.5 Score=25.28 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.1
Q ss_pred CCcccccccccccCchhHHHHHhhh
Q psy11591 167 VNTFVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 167 ~~~~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
...|.|-.|.+-|.+...|..|.++
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhc
Confidence 3458888898888888888888754
No 140
>KOG2907|consensus
Probab=51.18 E-value=7.4 Score=25.18 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=5.5
Q ss_pred eeCCccccccC
Q psy11591 142 YICEICGKDFG 152 (220)
Q Consensus 142 ~~C~~C~~~f~ 152 (220)
|.|+.|++.|+
T Consensus 103 YTC~kC~~k~~ 113 (116)
T KOG2907|consen 103 YTCPKCKYKFT 113 (116)
T ss_pred EEcCccceeee
Confidence 45555554443
No 141
>KOG4167|consensus
Probab=51.02 E-value=5.8 Score=34.44 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=20.8
Q ss_pred CCCccchhhhcCHHHHHHHHHHhhC
Q psy11591 2 FKCPQCGALLKNIWSLREHIMIHTG 26 (220)
Q Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~~~~ 26 (220)
|.|.+|++.|.....+.+||+.|.-
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHHH
Confidence 7788888888888888888888753
No 142
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=50.91 E-value=14 Score=34.48 Aligned_cols=11 Identities=36% Similarity=1.223 Sum_probs=6.7
Q ss_pred ceeCCcccccc
Q psy11591 141 LYICEICGKDF 151 (220)
Q Consensus 141 ~~~C~~C~~~f 151 (220)
+|.|+.||...
T Consensus 692 vy~CPsCGaev 702 (1337)
T PRK14714 692 VYVCPDCGAEV 702 (1337)
T ss_pred ceeCccCCCcc
Confidence 46666666543
No 143
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=49.82 E-value=14 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=9.3
Q ss_pred CceeCCccccccCCHHHH
Q psy11591 140 SLYICEICGKDFGTARYL 157 (220)
Q Consensus 140 ~~~~C~~C~~~f~~~~~l 157 (220)
+++.|..||..|.-...=
T Consensus 3 k~l~C~dCg~~FvfTa~E 20 (49)
T PF13451_consen 3 KTLTCKDCGAEFVFTAGE 20 (49)
T ss_pred eeEEcccCCCeEEEehhH
Confidence 345566666555544433
No 144
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=48.01 E-value=12 Score=20.66 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=6.8
Q ss_pred eecCcCccccCCh
Q psy11591 114 FKCNYCEKVYNNP 126 (220)
Q Consensus 114 ~~C~~C~~~f~~~ 126 (220)
|.|+.||..|...
T Consensus 29 W~C~~Cgh~w~~~ 41 (55)
T PF14311_consen 29 WKCPKCGHEWKAS 41 (55)
T ss_pred EECCCCCCeeEcc
Confidence 5555555554443
No 145
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=47.98 E-value=62 Score=22.61 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=35.3
Q ss_pred CceeCCccccccCCHHHHHHHHHHcCCCCccccc--ccccccCchhHHHHHhhh-cccccCCCCCC
Q psy11591 140 SLYICEICGKDFGTARYLKRHKDTHNSVNTFVCE--VCNTGFKVKKHLTQHYKS-HSMFIPPEQFP 202 (220)
Q Consensus 140 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~-h~~~~~~~~~~ 202 (220)
....||.|.-...-.. +....+.+-..|+-.|. .|.+. +++..|+.|.+. |-..+|.+.++
T Consensus 79 ~~L~CPLCRG~V~GWt-vve~AR~~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~HP~~rP~~vDP 142 (162)
T PF07800_consen 79 PELACPLCRGEVKGWT-VVEPARRFLNAKKRSCSQESCSFS-GTYSELRKHARSEHPSARPSEVDP 142 (162)
T ss_pred ccccCccccCceeceE-EchHHHHHhccCCccCcccccccc-cCHHHHHHHHHhhCCCCCCccCCH
Confidence 3578999954332221 11223444445555664 47776 689999999866 44455555443
No 146
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=47.07 E-value=14 Score=24.76 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=15.4
Q ss_pred eeCCccccccCCHHHHHHHHHHcCCCC
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHNSVN 168 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~~~~ 168 (220)
..|-++|+.|+ +|.+|+.+|.+--
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmT 100 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLT 100 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCC
Confidence 45667777766 4567777766543
No 147
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=45.73 E-value=14 Score=20.59 Aligned_cols=8 Identities=50% Similarity=1.335 Sum_probs=3.4
Q ss_pred eeCCcccc
Q psy11591 142 YICEICGK 149 (220)
Q Consensus 142 ~~C~~C~~ 149 (220)
..|+.||.
T Consensus 23 V~Cp~CGa 30 (54)
T TIGR01206 23 VICDECGA 30 (54)
T ss_pred EeCCCCCC
Confidence 34444443
No 148
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=45.34 E-value=14 Score=23.09 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=5.5
Q ss_pred ceeCCcccccc
Q psy11591 141 LYICEICGKDF 151 (220)
Q Consensus 141 ~~~C~~C~~~f 151 (220)
.+.|..|++.|
T Consensus 54 IW~C~~C~~~~ 64 (90)
T PTZ00255 54 IWRCKGCKKTV 64 (90)
T ss_pred EEEcCCCCCEE
Confidence 35555555544
No 149
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=44.93 E-value=10 Score=33.43 Aligned_cols=49 Identities=18% Similarity=0.476 Sum_probs=27.9
Q ss_pred eecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccc
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 178 (220)
..|..||..+.=+.. ..-+..|...+...|.+||. ....|..|+.||..
T Consensus 436 l~C~~Cg~v~~Cp~C-d~~lt~H~~~~~L~CH~Cg~---------------~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYIAECPNC-DSPLTLHKATGQLRCHYCGY---------------QEPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCcccCCCC-CcceEEecCCCeeEeCCCCC---------------CCCCCCCCCCCCCC
Confidence 456666665432211 11123455556677888873 34567889888854
No 150
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=44.51 E-value=9 Score=21.32 Aligned_cols=9 Identities=44% Similarity=1.416 Sum_probs=4.0
Q ss_pred CchhhhhcC
Q psy11591 89 CELCGAEFA 97 (220)
Q Consensus 89 C~~C~~~f~ 97 (220)
|+.||+.|.
T Consensus 8 C~~Cg~~~~ 16 (54)
T PF14446_consen 8 CPVCGKKFK 16 (54)
T ss_pred ChhhCCccc
Confidence 444444443
No 151
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=44.19 E-value=29 Score=24.17 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=6.8
Q ss_pred hhHHHHHHhhc
Q psy11591 71 KSNLTVHIRTH 81 (220)
Q Consensus 71 ~~~l~~h~~~~ 81 (220)
...|..|.+..
T Consensus 121 Y~eLrKHar~~ 131 (162)
T PF07800_consen 121 YSELRKHARSE 131 (162)
T ss_pred HHHHHHHHHhh
Confidence 45677776653
No 152
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=43.01 E-value=22 Score=19.19 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=5.5
Q ss_pred ccccccccccc
Q psy11591 169 TFVCEVCNTGF 179 (220)
Q Consensus 169 ~~~C~~C~~~f 179 (220)
.+.|+.||+.+
T Consensus 20 ~~vC~~Cg~~~ 30 (52)
T smart00661 20 RFVCRKCGYEE 30 (52)
T ss_pred EEECCcCCCeE
Confidence 45555555443
No 153
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=42.17 E-value=3.9 Score=27.96 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=6.2
Q ss_pred cccccccccCchh
Q psy11591 171 VCEVCNTGFKVKK 183 (220)
Q Consensus 171 ~C~~C~~~f~~~~ 183 (220)
.|..|++.|+++.
T Consensus 30 eC~~C~~RFTTyE 42 (147)
T TIGR00244 30 ECLECHERFTTFE 42 (147)
T ss_pred cCCccCCccceee
Confidence 4444555544443
No 154
>KOG2071|consensus
Probab=41.82 E-value=17 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCCcccccccccccCchhHHHHHhhhcccc
Q psy11591 166 SVNTFVCEVCNTGFKVKKHLTQHYKSHSMF 195 (220)
Q Consensus 166 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 195 (220)
...+-+|..||.+|.+......||..|...
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H~dw 444 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIHDDW 444 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhhhhh
Confidence 356789999999999999999998877433
No 155
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=41.69 E-value=9.6 Score=20.96 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=12.5
Q ss_pred CCcccccccccccCchhHHHHHhhhcc
Q psy11591 167 VNTFVCEVCNTGFKVKKHLTQHYKSHS 193 (220)
Q Consensus 167 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 193 (220)
...|+|+.|+..|=-.-++-.|...|.
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~LH~ 45 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHETLHN 45 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTTS-S
T ss_pred CCeEECCCCCCccccCcChhhhccccC
Confidence 345677777766666666666655553
No 156
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=41.48 E-value=28 Score=26.19 Aligned_cols=59 Identities=20% Similarity=0.566 Sum_probs=31.1
Q ss_pred CCcccccchhhcCChhHHHHHHhhhcCCCCcccccccccccCChhHHHHHHhhcCCCCcccCchhhhhcCCHH
Q psy11591 28 RPHVCHVCSKSFRNRGKLNVHYKRVHERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEFAQWA 100 (220)
Q Consensus 28 ~~~~C~~C~~~~~~~~~l~~H~~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~ 100 (220)
..|.|..|+... . ++.-....--.|..|.+.+.=.- -...+|...|.|+.|+..|....
T Consensus 111 rqFaC~~Cd~~W-----w----Rrvp~rKeVSRCr~C~~rYDPVP-----~dkmwG~aef~C~~C~h~F~G~~ 169 (278)
T PF15135_consen 111 RQFACSSCDHMW-----W----RRVPQRKEVSRCRKCRKRYDPVP-----CDKMWGIAEFHCPKCRHNFRGFA 169 (278)
T ss_pred eeeeccccchHH-----H----hccCcccccccccccccccCCCc-----cccccceeeeecccccccchhhh
Confidence 557777775431 1 11222222345777766543211 12235666688888888777553
No 157
>KOG1280|consensus
Probab=41.30 E-value=22 Score=28.09 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=13.1
Q ss_pred CCCccchhhhcCHHHHHHHHHHhhC
Q psy11591 2 FKCPQCGALLKNIWSLREHIMIHTG 26 (220)
Q Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~~~~ 26 (220)
|.|++|+..=.+...+..|....+.
T Consensus 80 ftCPyC~~~Gfte~~f~~Hv~s~Hp 104 (381)
T KOG1280|consen 80 FTCPYCGIMGFTERQFGTHVLSQHP 104 (381)
T ss_pred ccCCcccccccchhHHHHHhhhcCc
Confidence 5555555544455555555554333
No 158
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=41.16 E-value=5.6 Score=27.31 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.7
Q ss_pred cccccccccCch
Q psy11591 171 VCEVCNTGFKVK 182 (220)
Q Consensus 171 ~C~~C~~~f~~~ 182 (220)
.|..|+..|+++
T Consensus 30 eC~~C~~RFTTf 41 (156)
T COG1327 30 ECLECGERFTTF 41 (156)
T ss_pred cccccccccchh
Confidence 444555444443
No 159
>KOG1842|consensus
Probab=40.30 E-value=20 Score=29.43 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=14.6
Q ss_pred cccccchhhcCChhHHHHHHhhhcCC
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHER 55 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~ 55 (220)
|.|++|.+.|.+...|..|+...|..
T Consensus 16 flCPiC~~dl~~~~~L~~H~d~eH~~ 41 (505)
T KOG1842|consen 16 FLCPICLLDLPNLSALNDHLDVEHFE 41 (505)
T ss_pred ccCchHhhhhhhHHHHHHHHhhhccc
Confidence 55555555555555555555555543
No 160
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=39.82 E-value=20 Score=29.81 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.0
Q ss_pred cccccchhhcCChhHHHHHHhhhcCCC
Q psy11591 30 HVCHVCSKSFRNRGKLNVHYKRVHERI 56 (220)
Q Consensus 30 ~~C~~C~~~~~~~~~l~~H~~~~h~~~ 56 (220)
+.|+.|++.|.+...+..|+...|.+.
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH~~~ 84 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEHPAG 84 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhhhhh
Confidence 579999999999999999998888664
No 161
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=39.58 E-value=4.3 Score=20.98 Aligned_cols=8 Identities=38% Similarity=1.240 Sum_probs=3.3
Q ss_pred cccccccc
Q psy11591 170 FVCEVCNT 177 (220)
Q Consensus 170 ~~C~~C~~ 177 (220)
|.|..|++
T Consensus 29 y~C~~C~~ 36 (40)
T smart00440 29 YVCTKCGH 36 (40)
T ss_pred EEeCCCCC
Confidence 44444443
No 162
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=39.37 E-value=9.4 Score=24.46 Aligned_cols=7 Identities=43% Similarity=1.512 Sum_probs=4.2
Q ss_pred ccccccc
Q psy11591 170 FVCEVCN 176 (220)
Q Consensus 170 ~~C~~C~ 176 (220)
|.|+.|+
T Consensus 32 y~C~~C~ 38 (102)
T PF11672_consen 32 YVCTPCD 38 (102)
T ss_pred EECCCCC
Confidence 5666655
No 163
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=39.28 E-value=8.3 Score=26.13 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=6.1
Q ss_pred ccccccccccC
Q psy11591 59 HQCNHCGRAFS 69 (220)
Q Consensus 59 ~~C~~C~~~~~ 69 (220)
+.|..||..|.
T Consensus 71 ~~C~~CG~~~~ 81 (135)
T PRK03824 71 LKCRNCGNEWS 81 (135)
T ss_pred EECCCCCCEEe
Confidence 55666665543
No 164
>KOG1280|consensus
Probab=39.01 E-value=30 Score=27.41 Aligned_cols=36 Identities=22% Similarity=0.623 Sum_probs=19.2
Q ss_pred ceecCcCccccCChhhHHHHHhhhcCCCc--eeCCccc
Q psy11591 113 KFKCNYCEKVYNNPSNLQRHIKTHTDNSL--YICEICG 148 (220)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--~~C~~C~ 148 (220)
.|.|++|+..-.+...|..|....+.+-+ ..|++|.
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence 46666666665555666666555443332 2445543
No 165
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=38.46 E-value=9.9 Score=28.66 Aligned_cols=82 Identities=18% Similarity=0.430 Sum_probs=42.6
Q ss_pred cCCCCcccCchhhhhcCCHHHHHhHHHHh---CCcceecCcCccccCChhhH-------HHHHhh----hcCCCceeCCc
Q psy11591 81 HTDEKKYMCELCGAEFAQWATLYNHKFTH---NDIKFKCNYCEKVYNNPSNL-------QRHIKT----HTDNSLYICEI 146 (220)
Q Consensus 81 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~---~~~~~~C~~C~~~f~~~~~l-------~~H~~~----h~~~~~~~C~~ 146 (220)
.+|.+.|+|..|....-....+ .|+..- ....|.|..|++.-. .+.| -.|.+. ....+++.||.
T Consensus 137 ~hGGrif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNrlGq-~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPK 214 (314)
T PF06524_consen 137 DHGGRIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNRLGQ-YSCLRCKICFCDDHVRRKGFKYEKGKPIPCPK 214 (314)
T ss_pred cCCCeEEEeecCCCeeeccchh-hhhhhhhhhhcccccccccccccc-hhhhheeeeehhhhhhhcccccccCCCCCCCC
Confidence 3567777777777544333332 233222 334466665554422 2222 234443 23457888999
Q ss_pred cccccCCHHHHHHHHHHc
Q psy11591 147 CGKDFGTARYLKRHKDTH 164 (220)
Q Consensus 147 C~~~f~~~~~l~~H~~~h 164 (220)
||........|..-.++|
T Consensus 215 Cg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 215 CGYETQETKDLSMSTRSH 232 (314)
T ss_pred CCCcccccccceeeeecc
Confidence 987766655554433333
No 166
>PF14369 zf-RING_3: zinc-finger
Probab=38.01 E-value=12 Score=18.62 Aligned_cols=9 Identities=33% Similarity=1.021 Sum_probs=4.5
Q ss_pred ccccccccc
Q psy11591 60 QCNHCGRAF 68 (220)
Q Consensus 60 ~C~~C~~~~ 68 (220)
.|+.|+..|
T Consensus 23 ~CP~C~~gF 31 (35)
T PF14369_consen 23 ACPRCHGGF 31 (35)
T ss_pred CCcCCCCcE
Confidence 355555444
No 167
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=37.88 E-value=7.2 Score=19.40 Aligned_cols=12 Identities=42% Similarity=0.960 Sum_probs=4.4
Q ss_pred eCCccccccCCH
Q psy11591 143 ICEICGKDFGTA 154 (220)
Q Consensus 143 ~C~~C~~~f~~~ 154 (220)
.|..|++.|..+
T Consensus 5 ~C~eC~~~f~dS 16 (34)
T PF01286_consen 5 KCDECGKPFMDS 16 (34)
T ss_dssp E-TTT--EES-S
T ss_pred hHhHhCCHHHHH
Confidence 455566655544
No 168
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=37.82 E-value=17 Score=22.75 Aligned_cols=11 Identities=36% Similarity=1.250 Sum_probs=5.5
Q ss_pred ceeCCcccccc
Q psy11591 141 LYICEICGKDF 151 (220)
Q Consensus 141 ~~~C~~C~~~f 151 (220)
.+.|..|++.|
T Consensus 53 IW~C~~C~~~~ 63 (91)
T TIGR00280 53 IWTCRKCGAKF 63 (91)
T ss_pred EEEcCCCCCEE
Confidence 35555555544
No 169
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=37.78 E-value=16 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=12.3
Q ss_pred CcccccccccccCc
Q psy11591 168 NTFVCEVCNTGFKV 181 (220)
Q Consensus 168 ~~~~C~~C~~~f~~ 181 (220)
.|-+|..||+.|.+
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 68899999999875
No 170
>COG1773 Rubredoxin [Energy production and conversion]
Probab=37.40 E-value=14 Score=20.68 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=11.1
Q ss_pred CcccccccccccCch
Q psy11591 168 NTFVCEVCNTGFKVK 182 (220)
Q Consensus 168 ~~~~C~~C~~~f~~~ 182 (220)
+.|+|+.||+-|.-.
T Consensus 2 ~~~~C~~CG~vYd~e 16 (55)
T COG1773 2 KRWRCSVCGYVYDPE 16 (55)
T ss_pred CceEecCCceEeccc
Confidence 358899999887643
No 171
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=36.83 E-value=21 Score=22.68 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=9.5
Q ss_pred ceeCCccccccCCHH
Q psy11591 141 LYICEICGKDFGTAR 155 (220)
Q Consensus 141 ~~~C~~C~~~f~~~~ 155 (220)
|..|..||..|...+
T Consensus 2 pH~CtrCG~vf~~g~ 16 (112)
T COG3364 2 PHQCTRCGEVFDDGS 16 (112)
T ss_pred Cceeccccccccccc
Confidence 456777777776543
No 172
>KOG1842|consensus
Probab=36.23 E-value=18 Score=29.62 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=11.5
Q ss_pred eeCCccccccCCHHHHHHHHHHcC
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHN 165 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~ 165 (220)
|.||.|...|.+.+.|..|...-|
T Consensus 16 flCPiC~~dl~~~~~L~~H~d~eH 39 (505)
T KOG1842|consen 16 FLCPICLLDLPNLSALNDHLDVEH 39 (505)
T ss_pred ccCchHhhhhhhHHHHHHHHhhhc
Confidence 445555555555555544444333
No 173
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=36.19 E-value=11 Score=19.02 Aligned_cols=9 Identities=33% Similarity=1.135 Sum_probs=4.1
Q ss_pred ecCcCcccc
Q psy11591 115 KCNYCEKVY 123 (220)
Q Consensus 115 ~C~~C~~~f 123 (220)
.|+.||..|
T Consensus 3 ~C~~Cg~~Y 11 (36)
T PF05191_consen 3 ICPKCGRIY 11 (36)
T ss_dssp EETTTTEEE
T ss_pred CcCCCCCcc
Confidence 344444444
No 174
>KOG2807|consensus
Probab=35.48 E-value=47 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.621 Sum_probs=15.8
Q ss_pred ceecCcCccccCChhhHHHHHhhh
Q psy11591 113 KFKCNYCEKVYNNPSNLQRHIKTH 136 (220)
Q Consensus 113 ~~~C~~C~~~f~~~~~l~~H~~~h 136 (220)
.|.|+.|...|-..-....|-..|
T Consensus 345 ~y~C~~Ck~~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 345 RYRCESCKNVFCLDCDVFIHESLH 368 (378)
T ss_pred cEEchhccceeeccchHHHHhhhh
Confidence 478888887777665555555443
No 175
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=35.48 E-value=45 Score=21.39 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=22.0
Q ss_pred ccCchhhhhcCCHHHHHhHHHHhCCcceecCcCccc
Q psy11591 87 YMCELCGAEFAQWATLYNHKFTHNDIKFKCNYCEKV 122 (220)
Q Consensus 87 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~C~~C~~~ 122 (220)
|.|+.=|..|.+-......+.....+.|.|...|+.
T Consensus 4 f~i~~T~EiF~dYe~Y~~R~~~y~~~vwtC~~TGk~ 39 (102)
T PF10537_consen 4 FYIPFTGEIFRDYEEYLKRMILYNQRVWTCEITGKS 39 (102)
T ss_pred EEeCCCCcccCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 455555666666666666555556666666666654
No 176
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.28 E-value=27 Score=20.21 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=3.9
Q ss_pred ceeCCcccc
Q psy11591 141 LYICEICGK 149 (220)
Q Consensus 141 ~~~C~~C~~ 149 (220)
.|.|+.||.
T Consensus 46 ~~~C~~Cg~ 54 (69)
T PF07282_consen 46 VFTCPNCGF 54 (69)
T ss_pred eEEcCCCCC
Confidence 344444443
No 177
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=35.17 E-value=13 Score=33.21 Aligned_cols=10 Identities=40% Similarity=1.285 Sum_probs=0.0
Q ss_pred ceeCCccccc
Q psy11591 141 LYICEICGKD 150 (220)
Q Consensus 141 ~~~C~~C~~~ 150 (220)
.|.|+.|+..
T Consensus 680 ~~~Cp~C~~~ 689 (900)
T PF03833_consen 680 VYVCPDCGIE 689 (900)
T ss_dssp ----------
T ss_pred ceeccccccc
Confidence 3566666544
No 178
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=34.94 E-value=14 Score=18.95 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=4.9
Q ss_pred cccccchhhc
Q psy11591 30 HVCHVCSKSF 39 (220)
Q Consensus 30 ~~C~~C~~~~ 39 (220)
+.|..|++.|
T Consensus 13 f~C~~C~~~F 22 (39)
T smart00154 13 FKCRHCGNLF 22 (39)
T ss_pred eECCccCCcc
Confidence 4455555544
No 179
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=34.59 E-value=11 Score=24.66 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=6.1
Q ss_pred ceeCCcccccc
Q psy11591 141 LYICEICGKDF 151 (220)
Q Consensus 141 ~~~C~~C~~~f 151 (220)
-|.|..||..+
T Consensus 100 Fy~C~~Cg~~w 110 (113)
T COG1594 100 FYKCTRCGYRW 110 (113)
T ss_pred EEEecccCCEe
Confidence 35666666554
No 180
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=34.21 E-value=48 Score=25.90 Aligned_cols=80 Identities=23% Similarity=0.480 Sum_probs=46.5
Q ss_pred CCcccccchhhcCChhHHHHHHhhhc-----------CCCCcccccccccccCChhHHHHHHhhcCCCCcccCchhhhhc
Q psy11591 28 RPHVCHVCSKSFRNRGKLNVHYKRVH-----------ERIRTHQCNHCGRAFSDKSNLTVHIRTHTDEKKYMCELCGAEF 96 (220)
Q Consensus 28 ~~~~C~~C~~~~~~~~~l~~H~~~~h-----------~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f 96 (220)
-|..|+.|+-.+.....|..-..-.. ...+.-.|-.|...|.....-..- ..+....|+|+.|...|
T Consensus 321 LPi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~--~~~ss~rY~Ce~CK~~F 398 (421)
T COG5151 321 LPISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFD--ESTSSGRYQCELCKSTF 398 (421)
T ss_pred CCccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCccc--ccccccceechhhhhhh
Confidence 36788888876665555554321100 111223477777766654321111 11234568999999999
Q ss_pred CCHHHHHhHHHHh
Q psy11591 97 AQWATLYNHKFTH 109 (220)
Q Consensus 97 ~~~~~l~~h~~~~ 109 (220)
-..-+.-.|...|
T Consensus 399 C~dCdvfiHe~Lh 411 (421)
T COG5151 399 CSDCDVFIHETLH 411 (421)
T ss_pred hhhhHHHHHHHHh
Confidence 8887777777766
No 181
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=33.88 E-value=11 Score=23.40 Aligned_cols=10 Identities=50% Similarity=1.378 Sum_probs=5.8
Q ss_pred eeCCcccccc
Q psy11591 142 YICEICGKDF 151 (220)
Q Consensus 142 ~~C~~C~~~f 151 (220)
+.|..|++.|
T Consensus 54 W~C~~C~~~~ 63 (90)
T PF01780_consen 54 WKCKKCGKKF 63 (90)
T ss_dssp EEETTTTEEE
T ss_pred eecCCCCCEE
Confidence 5666665554
No 182
>KOG4167|consensus
Probab=33.84 E-value=8.5 Score=33.52 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.5
Q ss_pred cccccccccccCchhHHHHHhhhcccc
Q psy11591 169 TFVCEVCNTGFKVKKHLTQHYKSHSMF 195 (220)
Q Consensus 169 ~~~C~~C~~~f~~~~~l~~H~~~h~~~ 195 (220)
-|-|.+|++.|.-...+..||++|...
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr~q 818 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHRQQ 818 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHHHH
Confidence 489999999999999999999988543
No 183
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=33.81 E-value=36 Score=17.32 Aligned_cols=11 Identities=18% Similarity=0.827 Sum_probs=4.4
Q ss_pred ccccccccccc
Q psy11591 169 TFVCEVCNTGF 179 (220)
Q Consensus 169 ~~~C~~C~~~f 179 (220)
.|.|..|+..+
T Consensus 3 ryyCdyC~~~~ 13 (38)
T PF06220_consen 3 RYYCDYCKKYL 13 (38)
T ss_dssp S-B-TTT--B-
T ss_pred Ceeccccccee
Confidence 47777787777
No 184
>PRK04023 DNA polymerase II large subunit; Validated
Probab=32.95 E-value=54 Score=30.22 Aligned_cols=20 Identities=15% Similarity=-0.072 Sum_probs=10.0
Q ss_pred CCCCCCCCCccccccccccC
Q psy11591 198 PEQFPGLDPTSCNMSRTLPL 217 (220)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~ 217 (220)
..|+.+-....+.....+++
T Consensus 664 y~CPKCG~El~~~s~~~i~l 683 (1121)
T PRK04023 664 DECEKCGREPTPYSKRKIDL 683 (1121)
T ss_pred CcCCCCCCCCCccceEEecH
Confidence 33555555555555444443
No 185
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=32.76 E-value=20 Score=20.79 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=2.4
Q ss_pred ecCcCcccc
Q psy11591 115 KCNYCEKVY 123 (220)
Q Consensus 115 ~C~~C~~~f 123 (220)
.|..|++.|
T Consensus 11 ~C~~C~~~F 19 (69)
T PF01363_consen 11 NCMICGKKF 19 (69)
T ss_dssp B-TTT--B-
T ss_pred cCcCcCCcC
Confidence 344455554
No 186
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=32.65 E-value=22 Score=22.21 Aligned_cols=10 Identities=40% Similarity=1.212 Sum_probs=5.2
Q ss_pred eeCCcccccc
Q psy11591 142 YICEICGKDF 151 (220)
Q Consensus 142 ~~C~~C~~~f 151 (220)
+.|..|++.|
T Consensus 55 W~C~~C~~~~ 64 (90)
T PRK03976 55 WECRKCGAKF 64 (90)
T ss_pred EEcCCCCCEE
Confidence 5555555544
No 187
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.33 E-value=12 Score=29.30 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=6.7
Q ss_pred CCCCcccCchhhh
Q psy11591 82 TDEKKYMCELCGA 94 (220)
Q Consensus 82 ~~~~~~~C~~C~~ 94 (220)
.|.+-..|..|+.
T Consensus 208 ~G~RyL~CslC~t 220 (309)
T PRK03564 208 QGLRYLHCNLCES 220 (309)
T ss_pred CCceEEEcCCCCC
Confidence 3444455666553
No 188
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=32.06 E-value=30 Score=28.38 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=20.4
Q ss_pred eCCccccccCCHHHHHHHHHHcCCCCcccccccccccCchh
Q psy11591 143 ICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKVKK 183 (220)
Q Consensus 143 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 183 (220)
.|+.||..-.+ .|.+-|+|+.|++.+....
T Consensus 352 ~Cp~Cg~~m~S-----------~G~~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 352 VCPRCGGRMKS-----------AGRNGFRCKKCGTRARETL 381 (421)
T ss_pred CCCccCCchhh-----------cCCCCcccccccccCCccc
Confidence 68888866432 2333789999998876543
No 189
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.05 E-value=8.5 Score=28.47 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=7.9
Q ss_pred CceeCCccccccCCH
Q psy11591 140 SLYICEICGKDFGTA 154 (220)
Q Consensus 140 ~~~~C~~C~~~f~~~ 154 (220)
+.+.||+|+..|...
T Consensus 18 k~ieCPvC~tkFkke 32 (267)
T COG1655 18 KTIECPVCNTKFKKE 32 (267)
T ss_pred ceeccCcccchhhhh
Confidence 345555555555444
No 190
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.34 E-value=33 Score=30.00 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=7.2
Q ss_pred cccccccccCch
Q psy11591 171 VCEVCNTGFKVK 182 (220)
Q Consensus 171 ~C~~C~~~f~~~ 182 (220)
.|+.||......
T Consensus 43 fC~~CG~~~~~~ 54 (645)
T PRK14559 43 HCPNCGAETGTI 54 (645)
T ss_pred cccccCCcccch
Confidence 577777655443
No 191
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.24 E-value=24 Score=23.15 Aligned_cols=11 Identities=18% Similarity=0.631 Sum_probs=5.7
Q ss_pred eecCcCccccC
Q psy11591 114 FKCNYCEKVYN 124 (220)
Q Consensus 114 ~~C~~C~~~f~ 124 (220)
..|..|+..|.
T Consensus 71 ~~C~~Cg~~~~ 81 (115)
T TIGR00100 71 CECEDCSEEVS 81 (115)
T ss_pred EEcccCCCEEe
Confidence 45555554443
No 192
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=31.07 E-value=23 Score=18.31 Aligned_cols=12 Identities=25% Similarity=0.927 Sum_probs=7.6
Q ss_pred CceeCCcccccc
Q psy11591 140 SLYICEICGKDF 151 (220)
Q Consensus 140 ~~~~C~~C~~~f 151 (220)
++-.|++|+..|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 356777777655
No 193
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=30.93 E-value=17 Score=23.48 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=6.3
Q ss_pred cccccccccccC
Q psy11591 169 TFVCEVCNTGFK 180 (220)
Q Consensus 169 ~~~C~~C~~~f~ 180 (220)
.|.|+.|+....
T Consensus 19 ~~iCpeC~~EW~ 30 (109)
T TIGR00686 19 QLICPSCLYEWN 30 (109)
T ss_pred eeECcccccccc
Confidence 355555555443
No 194
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=30.88 E-value=22 Score=18.55 Aligned_cols=13 Identities=38% Similarity=0.920 Sum_probs=7.4
Q ss_pred CceeCCccccccC
Q psy11591 140 SLYICEICGKDFG 152 (220)
Q Consensus 140 ~~~~C~~C~~~f~ 152 (220)
-|+.|+.|+..|=
T Consensus 12 ~~~~C~~C~~~FC 24 (43)
T PF01428_consen 12 LPFKCKHCGKSFC 24 (43)
T ss_dssp SHEE-TTTS-EE-
T ss_pred CCeECCCCCcccC
Confidence 4678888887764
No 195
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=30.56 E-value=17 Score=19.60 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=10.5
Q ss_pred cccccccccccCch
Q psy11591 169 TFVCEVCNTGFKVK 182 (220)
Q Consensus 169 ~~~C~~C~~~f~~~ 182 (220)
.|+|..|++.+...
T Consensus 1 ky~C~~CgyvYd~~ 14 (47)
T PF00301_consen 1 KYQCPVCGYVYDPE 14 (47)
T ss_dssp EEEETTTSBEEETT
T ss_pred CcCCCCCCEEEcCC
Confidence 37899999877544
No 196
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=30.18 E-value=25 Score=22.98 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=4.7
Q ss_pred eecCcCcccc
Q psy11591 114 FKCNYCEKVY 123 (220)
Q Consensus 114 ~~C~~C~~~f 123 (220)
+.|..|+..|
T Consensus 71 ~~C~~Cg~~~ 80 (113)
T PRK12380 71 AWCWDCSQVV 80 (113)
T ss_pred EEcccCCCEE
Confidence 4455555443
No 197
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=29.50 E-value=24 Score=19.28 Aligned_cols=13 Identities=15% Similarity=0.708 Sum_probs=10.5
Q ss_pred cccccccccccCc
Q psy11591 169 TFVCEVCNTGFKV 181 (220)
Q Consensus 169 ~~~C~~C~~~f~~ 181 (220)
.|+|..||+.+..
T Consensus 1 ~y~C~~CgyiYd~ 13 (50)
T cd00730 1 KYECRICGYIYDP 13 (50)
T ss_pred CcCCCCCCeEECC
Confidence 3789999988774
No 198
>KOG3002|consensus
Probab=29.48 E-value=57 Score=25.56 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=45.0
Q ss_pred cceecCcCccccCChhhHHHHHhhhcCCCceeCCc----cccccCCHHHHHHHHHHcCCCCcccccc----cccccCchh
Q psy11591 112 IKFKCNYCEKVYNNPSNLQRHIKTHTDNSLYICEI----CGKDFGTARYLKRHKDTHNSVNTFVCEV----CNTGFKVKK 183 (220)
Q Consensus 112 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~ 183 (220)
..-.|+.|...+.+...+. +..-.....+.|+. |.+.|.+... ..|.+.... .||.|+. |.+. +...
T Consensus 79 ~~~~CP~Cr~~~g~~R~~a--mEkV~e~~~vpC~~~~~GC~~~~~Y~~~-~~HE~~C~f-~~~~CP~p~~~C~~~-G~~~ 153 (299)
T KOG3002|consen 79 VSNKCPTCRLPIGNIRCRA--MEKVAEAVLVPCKNAKLGCTKSFPYGEK-SKHEKVCEF-RPCSCPVPGAECKYT-GSYK 153 (299)
T ss_pred hcccCCccccccccHHHHH--HHHHHHhceecccccccCCceeeccccc-ccccccccc-CCcCCCCCcccCCcc-CcHH
Confidence 3456777777777554332 22223334455653 7777777766 466665555 6777754 5554 5677
Q ss_pred HHHHHhhhc
Q psy11591 184 HLTQHYKSH 192 (220)
Q Consensus 184 ~l~~H~~~h 192 (220)
.|..|...-
T Consensus 154 ~l~~H~~~~ 162 (299)
T KOG3002|consen 154 DLYAHLNDT 162 (299)
T ss_pred HHHHHHHhh
Confidence 788886543
No 199
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=29.38 E-value=45 Score=27.83 Aligned_cols=24 Identities=17% Similarity=0.551 Sum_probs=20.3
Q ss_pred eecCcCccccCChhhHHHHHhhhc
Q psy11591 114 FKCNYCEKVYNNPSNLQRHIKTHT 137 (220)
Q Consensus 114 ~~C~~C~~~f~~~~~l~~H~~~h~ 137 (220)
|.|+.|.+.|.+...+..|+...|
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhh
Confidence 788999999999999999987544
No 200
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.11 E-value=26 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=19.8
Q ss_pred eeCCccccccCCHHHHHHHHHHcCCCCcccccccccccCc
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGFKV 181 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 181 (220)
..||.|+..... ++-..-.+...|.|..|++.|..
T Consensus 31 ~~cP~C~s~~~~-----k~g~~~~~~qRyrC~~C~~tf~~ 65 (129)
T COG3677 31 VNCPRCKSSNVV-----KIGGIRRGHQRYKCKSCGSTFTV 65 (129)
T ss_pred CcCCCCCcccee-----eECCccccccccccCCcCcceee
Confidence 467777654311 11112233567888888888764
No 201
>PRK10220 hypothetical protein; Provisional
Probab=29.06 E-value=24 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.866 Sum_probs=6.4
Q ss_pred cccccccccccC
Q psy11591 169 TFVCEVCNTGFK 180 (220)
Q Consensus 169 ~~~C~~C~~~f~ 180 (220)
.|.|+.|+..+.
T Consensus 20 ~~vCpeC~hEW~ 31 (111)
T PRK10220 20 MYICPECAHEWN 31 (111)
T ss_pred eEECCcccCcCC
Confidence 355555555543
No 202
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=28.87 E-value=40 Score=18.89 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=6.6
Q ss_pred CCcccccccccc
Q psy11591 56 IRTHQCNHCGRA 67 (220)
Q Consensus 56 ~~~~~C~~C~~~ 67 (220)
...|.|+.||..
T Consensus 12 ~v~~~Cp~cGip 23 (55)
T PF13824_consen 12 HVNFECPDCGIP 23 (55)
T ss_pred ccCCcCCCCCCc
Confidence 344666666554
No 203
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=28.50 E-value=13 Score=17.57 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=10.1
Q ss_pred ccccccccccCchhHHHHH
Q psy11591 170 FVCEVCNTGFKVKKHLTQH 188 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H 188 (220)
|.|-.|++.| +......|
T Consensus 1 ~sCiDC~~~F-~~~~y~~H 18 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSH 18 (28)
T ss_dssp EEETTTTEEE-EGGGTTT-
T ss_pred CeeecCCCCc-CcCCcCCC
Confidence 4577777777 44444444
No 204
>KOG0717|consensus
Probab=28.49 E-value=39 Score=28.02 Aligned_cols=22 Identities=32% Similarity=0.824 Sum_probs=19.7
Q ss_pred eeCCccccccCCHHHHHHHHHH
Q psy11591 142 YICEICGKDFGTARYLKRHKDT 163 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~ 163 (220)
+.|.+|++.|.+...|.+|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 8899999999999999999653
No 205
>KOG4377|consensus
Probab=28.16 E-value=17 Score=29.46 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=18.7
Q ss_pred cccc--ccccccCchhHHHHHhhhcccc
Q psy11591 170 FVCE--VCNTGFKVKKHLTQHYKSHSMF 195 (220)
Q Consensus 170 ~~C~--~C~~~f~~~~~l~~H~~~h~~~ 195 (220)
+.|. -|+.++.+-+++..|.+.|-..
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkrkheRq 429 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKRKHERQ 429 (480)
T ss_pred eeecccCCceEEEehhhhhhhhhhhhhh
Confidence 4453 3888888888888888777544
No 206
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.13 E-value=47 Score=29.29 Aligned_cols=27 Identities=19% Similarity=0.593 Sum_probs=17.1
Q ss_pred hcCCCceeCCccccccCCHHHHHHHHHHcCCCCcccccccccc
Q psy11591 136 HTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178 (220)
Q Consensus 136 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 178 (220)
|...+...|.+||.. ..+..|+.|+..
T Consensus 405 h~~~~~l~Ch~CG~~----------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 405 PSAGGTPRCRWCGRA----------------APDWRCPRCGSD 431 (665)
T ss_pred ecCCCeeECCCCcCC----------------CcCccCCCCcCC
Confidence 444556778888742 135688888754
No 207
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.22 E-value=48 Score=18.15 Aligned_cols=9 Identities=56% Similarity=1.165 Sum_probs=3.6
Q ss_pred CCccccccC
Q psy11591 144 CEICGKDFG 152 (220)
Q Consensus 144 C~~C~~~f~ 152 (220)
|..|++.|.
T Consensus 5 C~~C~~~F~ 13 (57)
T cd00065 5 CMGCGKPFT 13 (57)
T ss_pred CcccCcccc
Confidence 334444433
No 208
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.04 E-value=25 Score=19.34 Aligned_cols=12 Identities=25% Similarity=0.966 Sum_probs=6.1
Q ss_pred eCCccccccCCH
Q psy11591 143 ICEICGKDFGTA 154 (220)
Q Consensus 143 ~C~~C~~~f~~~ 154 (220)
.||+|++.|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899998888644
No 209
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=25.92 E-value=27 Score=22.34 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=18.9
Q ss_pred CcccccccccccCchhHHHHHhh
Q psy11591 168 NTFVCEVCNTGFKVKKHLTQHYK 190 (220)
Q Consensus 168 ~~~~C~~C~~~f~~~~~l~~H~~ 190 (220)
..+.|..|.+-|.+...|..|++
T Consensus 54 GqhYCieCaryf~t~~aL~~Hkk 76 (126)
T COG5112 54 GQHYCIECARYFITEKALMEHKK 76 (126)
T ss_pred ceeeeehhHHHHHHHHHHHHHhc
Confidence 44788889988988888988874
No 210
>KOG0717|consensus
Probab=25.88 E-value=36 Score=28.19 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=19.9
Q ss_pred ccccccccccCchhHHHHHhhh
Q psy11591 170 FVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 170 ~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
+.|.+|+++|.+..+|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 8899999999999999999643
No 211
>KOG3507|consensus
Probab=25.60 E-value=45 Score=18.85 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=4.6
Q ss_pred ceeCCccccc
Q psy11591 141 LYICEICGKD 150 (220)
Q Consensus 141 ~~~C~~C~~~ 150 (220)
.+.|..||..
T Consensus 37 ~irCReCG~R 46 (62)
T KOG3507|consen 37 VIRCRECGYR 46 (62)
T ss_pred cEehhhcchH
Confidence 3444444443
No 212
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.13 E-value=57 Score=27.69 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=24.5
Q ss_pred ecCcCccccCChhhHHHHHhhhcCCCceeCCccccccCCHHHHHHHHHHcCCCCccccccccc
Q psy11591 115 KCNYCEKVYNNPSNLQRHIKTHTDNSLYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNT 177 (220)
Q Consensus 115 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 177 (220)
.|..||....=.. ....+..|..++...|.+||... ..|..|+.|+.
T Consensus 215 ~C~~Cg~~~~C~~-C~~~l~~h~~~~~l~Ch~Cg~~~---------------~~~~~Cp~C~s 261 (505)
T TIGR00595 215 LCRSCGYILCCPN-CDVSLTYHKKEGKLRCHYCGYQE---------------PIPKTCPQCGS 261 (505)
T ss_pred EhhhCcCccCCCC-CCCceEEecCCCeEEcCCCcCcC---------------CCCCCCCCCCC
Confidence 5666665533221 11123344555667777777442 24567777765
No 213
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=25.01 E-value=53 Score=22.36 Aligned_cols=40 Identities=28% Similarity=0.584 Sum_probs=21.8
Q ss_pred CCccchhhhcCHHHHHHHHHHhhCCCCcccccchhhcCChhHHHHHHhhhcCC
Q psy11591 3 KCPQCGALLKNIWSLREHIMIHTGERPHVCHVCSKSFRNRGKLNVHYKRVHER 55 (220)
Q Consensus 3 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~C~~C~~~~~~~~~l~~H~~~~h~~ 55 (220)
.|+.||+.|... ....|+.|.+.-.........+.+.|++
T Consensus 5 nC~~CgklF~~~-------------~~~iCp~C~~~~e~~f~kV~~yLr~~p~ 44 (137)
T TIGR03826 5 NCPKCGRLFVKT-------------GRDVCPSCYEEEEREFEKVYKFLRKHEN 44 (137)
T ss_pred cccccchhhhhc-------------CCccCHHHhHHHHHHHHHHHHHHHHCCC
Confidence 477888777541 1235888876544444444443344444
No 214
>PTZ00448 hypothetical protein; Provisional
Probab=24.50 E-value=52 Score=26.46 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=21.3
Q ss_pred cccccccccccCchhHHHHHhhhc
Q psy11591 169 TFVCEVCNTGFKVKKHLTQHYKSH 192 (220)
Q Consensus 169 ~~~C~~C~~~f~~~~~l~~H~~~h 192 (220)
.|.|..|+..|.+....+.|+++.
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSD 337 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSE 337 (373)
T ss_pred CccccccccccCCHHHHHHHhhhh
Confidence 588999999999999999998763
No 215
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=24.24 E-value=49 Score=23.92 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=6.0
Q ss_pred cccCchhhhhcC
Q psy11591 86 KYMCELCGAEFA 97 (220)
Q Consensus 86 ~~~C~~C~~~f~ 97 (220)
.+.|..||..++
T Consensus 30 lvrC~eCG~V~~ 41 (201)
T COG1326 30 LVRCEECGTVHP 41 (201)
T ss_pred EEEccCCCcEee
Confidence 345555555443
No 216
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.22 E-value=34 Score=22.51 Aligned_cols=10 Identities=30% Similarity=1.115 Sum_probs=4.9
Q ss_pred eecCcCcccc
Q psy11591 114 FKCNYCEKVY 123 (220)
Q Consensus 114 ~~C~~C~~~f 123 (220)
+.|..|+..|
T Consensus 72 ~~C~~Cg~~~ 81 (117)
T PRK00564 72 LECKDCSHVF 81 (117)
T ss_pred EEhhhCCCcc
Confidence 4555555443
No 217
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=24.19 E-value=38 Score=15.91 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=3.2
Q ss_pred ceecCcCccc
Q psy11591 113 KFKCNYCEKV 122 (220)
Q Consensus 113 ~~~C~~C~~~ 122 (220)
.|.|..|+..
T Consensus 15 ~Y~C~~Cdf~ 24 (30)
T PF07649_consen 15 FYRCSECDFD 24 (30)
T ss_dssp EEE-TTT---
T ss_pred eEECccCCCc
Confidence 4555555443
No 218
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=23.99 E-value=65 Score=15.87 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=10.8
Q ss_pred eeCCccccccCCHHHHHHHHHHc
Q psy11591 142 YICEICGKDFGTARYLKRHKDTH 164 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h 164 (220)
+.|+.|++.+.. +.+..|+...
T Consensus 5 ~~C~nC~R~v~a-~RfA~HLekC 26 (33)
T PF08209_consen 5 VECPNCGRPVAA-SRFAPHLEKC 26 (33)
T ss_dssp EE-TTTSSEEEG-GGHHHHHHHH
T ss_pred EECCCCcCCcch-hhhHHHHHHH
Confidence 566666655432 3445555543
No 219
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=23.54 E-value=22 Score=24.33 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=18.0
Q ss_pred ceeCCccccccCCHHHHHHHHHHcCCCCccccccccccc
Q psy11591 141 LYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTGF 179 (220)
Q Consensus 141 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 179 (220)
.|.|..|+..+.. +. .+.....|.|..|+-.+
T Consensus 112 ~y~C~~C~~~~~~------~r-r~~~~~~y~C~~C~g~l 143 (146)
T smart00731 112 PYRCTGCGQRYLR------VR-RSNNVSRYRCGKCGGKL 143 (146)
T ss_pred EEECCCCCCCCce------Ec-cccCcceEEcCCCCCEE
Confidence 5778777766531 11 12222567888887654
No 220
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=23.54 E-value=33 Score=22.39 Aligned_cols=11 Identities=18% Similarity=0.751 Sum_probs=5.1
Q ss_pred eecCcCccccC
Q psy11591 114 FKCNYCEKVYN 124 (220)
Q Consensus 114 ~~C~~C~~~f~ 124 (220)
+.|..|+..|.
T Consensus 71 ~~C~~Cg~~~~ 81 (113)
T PF01155_consen 71 ARCRDCGHEFE 81 (113)
T ss_dssp EEETTTS-EEE
T ss_pred EECCCCCCEEe
Confidence 45555555543
No 221
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=23.38 E-value=24 Score=24.31 Aligned_cols=11 Identities=36% Similarity=1.361 Sum_probs=6.5
Q ss_pred ceeCCcccccc
Q psy11591 141 LYICEICGKDF 151 (220)
Q Consensus 141 ~~~C~~C~~~f 151 (220)
.|.|+.|+..+
T Consensus 123 ~~~C~~C~~~~ 133 (157)
T PF10263_consen 123 VYRCPSCGREY 133 (157)
T ss_pred EEEcCCCCCEe
Confidence 45666666554
No 222
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.46 E-value=47 Score=19.00 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=10.0
Q ss_pred CCCceeCCccccccC
Q psy11591 138 DNSLYICEICGKDFG 152 (220)
Q Consensus 138 ~~~~~~C~~C~~~f~ 152 (220)
.+....|++|+..|.
T Consensus 45 ~~gev~CPYC~t~y~ 59 (62)
T COG4391 45 DEGEVVCPYCSTRYR 59 (62)
T ss_pred CCCcEecCccccEEE
Confidence 344467888887765
No 223
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=22.39 E-value=30 Score=19.45 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=4.2
Q ss_pred CCcccCchhh
Q psy11591 84 EKKYMCELCG 93 (220)
Q Consensus 84 ~~~~~C~~C~ 93 (220)
...|.|..|.
T Consensus 29 i~tYmC~eC~ 38 (56)
T PF09963_consen 29 IHTYMCDECK 38 (56)
T ss_pred CcceeChhHH
Confidence 3334444443
No 224
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.33 E-value=1.2e+02 Score=21.67 Aligned_cols=16 Identities=31% Similarity=0.904 Sum_probs=7.1
Q ss_pred cCCCceeCCccccccC
Q psy11591 137 TDNSLYICEICGKDFG 152 (220)
Q Consensus 137 ~~~~~~~C~~C~~~f~ 152 (220)
....-|.|+.|...|+
T Consensus 109 ~~~~~y~C~~~~~r~s 124 (176)
T COG1675 109 TENNYYVCPNCHVKYS 124 (176)
T ss_pred ccCCceeCCCCCCccc
Confidence 3344455544444433
No 225
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=22.02 E-value=83 Score=24.44 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=13.1
Q ss_pred CcccccccccccCchhHHHHHhhh
Q psy11591 168 NTFVCEVCNTGFKVKKHLTQHYKS 191 (220)
Q Consensus 168 ~~~~C~~C~~~f~~~~~l~~H~~~ 191 (220)
..|.|..|-+-|.+...|.+|+..
T Consensus 47 ~lyiCe~Clky~~~~~~l~~H~~~ 70 (290)
T PLN03238 47 KLYICEYCLKYMRKKKSLLRHLAK 70 (290)
T ss_pred eEEEcCCCcchhCCHHHHHHHHHh
Confidence 345555555555555555555543
No 227
>PLN02294 cytochrome c oxidase subunit Vb
Probab=21.83 E-value=43 Score=23.64 Aligned_cols=16 Identities=19% Similarity=0.613 Sum_probs=12.4
Q ss_pred CCCceeCCccccccCC
Q psy11591 138 DNSLYICEICGKDFGT 153 (220)
Q Consensus 138 ~~~~~~C~~C~~~f~~ 153 (220)
.++|..|++||..|.-
T Consensus 138 kGkp~RCpeCG~~fkL 153 (174)
T PLN02294 138 KGKSFECPVCTQYFEL 153 (174)
T ss_pred CCCceeCCCCCCEEEE
Confidence 3478899999988763
No 228
>COG4640 Predicted membrane protein [Function unknown]
Probab=21.73 E-value=69 Score=26.04 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=9.3
Q ss_pred cccccccccCchhHHHH
Q psy11591 171 VCEVCNTGFKVKKHLTQ 187 (220)
Q Consensus 171 ~C~~C~~~f~~~~~l~~ 187 (220)
+|+.||..|.....+..
T Consensus 17 qC~qCG~~~t~~~sqan 33 (465)
T COG4640 17 QCTQCGHKFTSRQSQAN 33 (465)
T ss_pred cccccCCcCCchhhhhh
Confidence 46666666555554443
No 229
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.16 E-value=41 Score=22.03 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.0
Q ss_pred eecCcCcccc
Q psy11591 114 FKCNYCEKVY 123 (220)
Q Consensus 114 ~~C~~C~~~f 123 (220)
+.|..|+..|
T Consensus 71 ~~C~~Cg~~~ 80 (114)
T PRK03681 71 CWCETCQQYV 80 (114)
T ss_pred EEcccCCCee
Confidence 4555555443
No 230
>PHA02998 RNA polymerase subunit; Provisional
Probab=21.03 E-value=22 Score=25.19 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=4.2
Q ss_pred ccccccccc
Q psy11591 170 FVCEVCNTG 178 (220)
Q Consensus 170 ~~C~~C~~~ 178 (220)
|.|..|++.
T Consensus 172 YkC~~CG~~ 180 (195)
T PHA02998 172 HACRDCKKH 180 (195)
T ss_pred EEcCCCCCc
Confidence 444444444
No 231
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.98 E-value=65 Score=16.87 Aligned_cols=15 Identities=33% Similarity=0.842 Sum_probs=8.6
Q ss_pred cccccccccCchhHH
Q psy11591 171 VCEVCNTGFKVKKHL 185 (220)
Q Consensus 171 ~C~~C~~~f~~~~~l 185 (220)
.|..|+..|+.....
T Consensus 10 ~C~~C~rpf~WRKKW 24 (42)
T PF10013_consen 10 ICPVCGRPFTWRKKW 24 (42)
T ss_pred cCcccCCcchHHHHH
Confidence 566666666654433
No 232
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.90 E-value=28 Score=23.97 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=15.3
Q ss_pred ceeCCccccccCCHHHHHHHHHHcCCCCcccccccccc
Q psy11591 141 LYICEICGKDFGTARYLKRHKDTHNSVNTFVCEVCNTG 178 (220)
Q Consensus 141 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 178 (220)
.|.|..||...... + ....-.|+.|+..
T Consensus 112 ~l~C~~Cg~~~~~~---------~-~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 112 TLVCENCGHEVELT---------H-PERLPPCPKCGHT 139 (146)
T ss_pred eEecccCCCEEEec---------C-CCcCCCCCCCCCC
Confidence 47777777553211 2 2334567777754
No 233
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.64 E-value=34 Score=21.83 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=5.8
Q ss_pred ccccccccccC
Q psy11591 170 FVCEVCNTGFK 180 (220)
Q Consensus 170 ~~C~~C~~~f~ 180 (220)
..|+.||..+.
T Consensus 43 ~~C~~CG~y~~ 53 (99)
T PRK14892 43 ITCGNCGLYTE 53 (99)
T ss_pred EECCCCCCccC
Confidence 45666665443
No 234
>KOG4118|consensus
Probab=20.23 E-value=53 Score=19.00 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=10.8
Q ss_pred eeCCccccccCCHHHHHHHHHHcC
Q psy11591 142 YICEICGKDFGTARYLKRHKDTHN 165 (220)
Q Consensus 142 ~~C~~C~~~f~~~~~l~~H~~~h~ 165 (220)
|.|.+|-..-.....+..|....|
T Consensus 39 ~kCtVC~~~mpdpktfkqhfe~kH 62 (74)
T KOG4118|consen 39 HKCTVCMVQMPDPKTFKQHFENKH 62 (74)
T ss_pred hhhHhhHhhCCCCchHHHHHhhcC
Confidence 344444444444444444444433
No 235
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=20.08 E-value=18 Score=18.58 Aligned_cols=8 Identities=50% Similarity=1.593 Sum_probs=3.0
Q ss_pred ceeCCccc
Q psy11591 141 LYICEICG 148 (220)
Q Consensus 141 ~~~C~~C~ 148 (220)
.+.|..|+
T Consensus 24 ~w~C~~C~ 31 (40)
T PF04810_consen 24 TWICNFCG 31 (40)
T ss_dssp EEEETTT-
T ss_pred EEECcCCC
Confidence 34444443
Done!